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For: Burki F, Shalchian-Tabrizi K, Minge M, Skjaeveland A, Nikolaev SI, Jakobsen KS, Pawlowski J. Phylogenomics reshuffles the eukaryotic supergroups. PLoS One 2007;2:e790. [PMID: 17726520 PMCID: PMC1949142 DOI: 10.1371/journal.pone.0000790] [Citation(s) in RCA: 307] [Impact Index Per Article: 18.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2007] [Accepted: 07/26/2007] [Indexed: 11/19/2022]  Open
Number Cited by Other Article(s)
1
Lauzon J, Caron D, Lazar CS. The Saint-Leonard Urban Glaciotectonic Cave Harbors Rich and Diverse Planktonic and Sedimentary Microbial Communities. Microorganisms 2024;12:1791. [PMID: 39338466 PMCID: PMC11434022 DOI: 10.3390/microorganisms12091791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2024] [Revised: 08/19/2024] [Accepted: 08/23/2024] [Indexed: 09/30/2024]  Open
2
Jirsová D, Wideman JG. Integrated overview of stramenopile ecology, taxonomy, and heterotrophic origin. THE ISME JOURNAL 2024;18:wrae150. [PMID: 39077993 PMCID: PMC11412368 DOI: 10.1093/ismejo/wrae150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 06/12/2024] [Accepted: 07/29/2024] [Indexed: 07/31/2024]
3
Van Etten J, Stephens TG, Bhattacharya D. A k-mer-Based Approach for Phylogenetic Classification of Taxa in Environmental Genomic Data. Syst Biol 2023;72:1101-1118. [PMID: 37314057 DOI: 10.1093/sysbio/syad037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 03/20/2023] [Accepted: 06/12/2023] [Indexed: 06/15/2023]  Open
4
Sinha SD, Wideman JG. The persistent homology of mitochondrial ATP synthases. iScience 2023;26:106700. [PMID: 37250340 PMCID: PMC10214729 DOI: 10.1016/j.isci.2023.106700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 01/24/2023] [Accepted: 04/14/2023] [Indexed: 05/31/2023]  Open
5
Agostini A, Bína D, Carbonera D, Litvín R. Conservation of triplet-triplet energy transfer photoprotective pathways in fucoxanthin chlorophyll-binding proteins across algal lineages. BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2023;1864:148935. [PMID: 36379269 DOI: 10.1016/j.bbabio.2022.148935] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Revised: 10/18/2022] [Accepted: 11/07/2022] [Indexed: 11/14/2022]
6
van der Gulik PTS, Hoff WD, Speijer D. Renewing Linnaean taxonomy: a proposal to restructure the highest levels of the Natural System. Biol Rev Camb Philos Soc 2023;98:584-602. [PMID: 36366773 DOI: 10.1111/brv.12920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Revised: 10/31/2022] [Accepted: 11/02/2022] [Indexed: 11/13/2022]
7
Gololobova MA, Belyakova GA. Position of Algae on the Tree of Life. DOKLADY BIOLOGICAL SCIENCES : PROCEEDINGS OF THE ACADEMY OF SCIENCES OF THE USSR, BIOLOGICAL SCIENCES SECTIONS 2022;507:312-326. [PMID: 36781528 DOI: 10.1134/s0012496622060035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 07/27/2022] [Accepted: 07/27/2022] [Indexed: 02/15/2023]
8
Cerón-Romero MA, Fonseca MM, de Oliveira Martins L, Posada D, Katz LA. Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages. Genome Biol Evol 2022;14:evac119. [PMID: 35880421 PMCID: PMC9366629 DOI: 10.1093/gbe/evac119] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/11/2022] [Indexed: 12/02/2022]  Open
9
Tekle YI, Wang F, Wood FC, Anderson OR, Smirnov A. New insights on the evolutionary relationships between the major lineages of Amoebozoa. Sci Rep 2022;12:11173. [PMID: 35778543 PMCID: PMC9249873 DOI: 10.1038/s41598-022-15372-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 06/22/2022] [Indexed: 11/08/2022]  Open
10
Yazaki E, Yabuki A, Imaizumi A, Kume K, Hashimoto T, Inagaki Y. The closest lineage of Archaeplastida is revealed by phylogenomics analyses that include Microheliella maris. Open Biol 2022;12:210376. [PMID: 35414259 PMCID: PMC9006020 DOI: 10.1098/rsob.210376] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
11
López-García A, Saborío-Montero A, Gutiérrez-Rivas M, Atxaerandio R, Goiri I, García-Rodríguez A, Jiménez-Montero JA, González C, Tamames J, Puente-Sánchez F, Serrano M, Carrasco R, Óvilo C, González-Recio O. Fungal and ciliate protozoa are the main rumen microbes associated with methane emissions in dairy cattle. Gigascience 2022;11:6514927. [PMID: 35077540 PMCID: PMC8848325 DOI: 10.1093/gigascience/giab088] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Revised: 10/18/2021] [Accepted: 11/30/2021] [Indexed: 12/13/2022]  Open
12
Di Franco A, Baurain D, Glöckner G, Melkonian M, Philippe H. Lower statistical support with larger datasets: insights from the Ochrophyta radiation. Mol Biol Evol 2021;39:6409865. [PMID: 34694402 PMCID: PMC8763130 DOI: 10.1093/molbev/msab300] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
13
Bussi Y, Kapon R, Reich Z. Large-scale k-mer-based analysis of the informational properties of genomes, comparative genomics and taxonomy. PLoS One 2021;16:e0258693. [PMID: 34648558 PMCID: PMC8516232 DOI: 10.1371/journal.pone.0258693] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 10/02/2021] [Indexed: 12/24/2022]  Open
14
Lahr DJ. An emerging paradigm for the origin and evolution of shelled amoebae, integrating advances from molecular phylogenetics, morphology and paleontology. Mem Inst Oswaldo Cruz 2021;116:e200620. [PMID: 34406221 PMCID: PMC8370470 DOI: 10.1590/0074-02760200620] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 07/05/2021] [Indexed: 11/22/2022]  Open
15
Wiser MF. Unique Endomembrane Systems and Virulence in Pathogenic Protozoa. Life (Basel) 2021;11:life11080822. [PMID: 34440567 PMCID: PMC8401336 DOI: 10.3390/life11080822] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Revised: 08/10/2021] [Accepted: 08/10/2021] [Indexed: 02/06/2023]  Open
16
Zhang W, Wang X, Miao Y, Li Y, Zhang H, Niu L, Wang L. Determining the effect of sertraline on nitrogen transformation through the microbial food web in sediments based on 15N-DNA-stable isotope probing. ENVIRONMENTAL RESEARCH 2021;199:111347. [PMID: 34019893 DOI: 10.1016/j.envres.2021.111347] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 05/11/2021] [Accepted: 05/13/2021] [Indexed: 06/12/2023]
17
Irisarri I, Strassert JFH, Burki F. Phylogenomic Insights into the Origin of Primary Plastids. Syst Biol 2021;71:105-120. [PMID: 33988690 DOI: 10.1093/sysbio/syab036] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 05/07/2021] [Accepted: 05/10/2021] [Indexed: 11/13/2022]  Open
18
Where are the basal fungi? Current status on diversity, ecology, evolution, and taxonomy. Biologia (Bratisl) 2020. [DOI: 10.2478/s11756-020-00642-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
19
Keeling PJ, Burki F. Progress towards the Tree of Eukaryotes. Curr Biol 2020;29:R808-R817. [PMID: 31430481 DOI: 10.1016/j.cub.2019.07.031] [Citation(s) in RCA: 73] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
20
Jamy M, Foster R, Barbera P, Czech L, Kozlov A, Stamatakis A, Bending G, Hilton S, Bass D, Burki F. Long‐read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity. Mol Ecol Resour 2019;20:429-443. [DOI: 10.1111/1755-0998.13117] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Revised: 09/11/2019] [Accepted: 10/31/2019] [Indexed: 11/28/2022]
21
Yubuki N, Galindo LJ, Reboul G, López-García P, Brown MW, Pollet N, Moreira D. Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina–Blastocystis Stramenopile Lineage. Mol Biol Evol 2019;37:651-659. [DOI: 10.1093/molbev/msz250] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
22
Nagai S, Chen H, Kawakami Y, Yamamoto K, Sildever S, Kanno N, Oikawa H, Yasuike M, Nakamura Y, Hongo Y, Fujiwara A, Kobayashi T, Gojobori T. Monitoring of the toxic dinoflagellate Alexandrium catenella in Osaka Bay, Japan using a massively parallel sequencing (MPS)-based technique. HARMFUL ALGAE 2019;89:101660. [PMID: 31672234 DOI: 10.1016/j.hal.2019.101660] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Revised: 08/10/2019] [Accepted: 08/28/2019] [Indexed: 06/10/2023]
23
Burki F, Roger AJ, Brown MW, Simpson AGB. The New Tree of Eukaryotes. Trends Ecol Evol 2019;35:43-55. [PMID: 31606140 DOI: 10.1016/j.tree.2019.08.008] [Citation(s) in RCA: 412] [Impact Index Per Article: 82.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Revised: 08/15/2019] [Accepted: 08/15/2019] [Indexed: 01/01/2023]
24
Strassert JFH, Jamy M, Mylnikov AP, Tikhonenkov DV, Burki F. New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life. Mol Biol Evol 2019;36:757-765. [PMID: 30668767 PMCID: PMC6844682 DOI: 10.1093/molbev/msz012] [Citation(s) in RCA: 61] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
25
Baldisserotto C, Sabia A, Ferroni L, Pancaldi S. Biological aspects and biotechnological potential of marine diatoms in relation to different light regimens. World J Microbiol Biotechnol 2019;35:35. [PMID: 30712106 DOI: 10.1007/s11274-019-2607-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Accepted: 01/27/2019] [Indexed: 11/25/2022]
26
Kuźnicki D, Meller B, Arasimowicz-Jelonek M, Braszewska-Zalewska A, Drozda A, Floryszak-Wieczorek J. BABA-Induced DNA Methylome Adjustment to Intergenerational Defense Priming in Potato to Phytophthora infestans. FRONTIERS IN PLANT SCIENCE 2019;10:650. [PMID: 31214209 PMCID: PMC6554679 DOI: 10.3389/fpls.2019.00650] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2018] [Accepted: 04/30/2019] [Indexed: 05/21/2023]
27
Cavalier-Smith T, Chao EE, Lewis R. Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organisation of sister phyla Cercozoa and Retaria. PROTOPLASMA 2018;255:1517-1574. [PMID: 29666938 PMCID: PMC6133090 DOI: 10.1007/s00709-018-1241-1] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Accepted: 03/12/2018] [Indexed: 05/18/2023]
28
Coelho SM, Gueno J, Lipinska AP, Cock JM, Umen JG. UV Chromosomes and Haploid Sexual Systems. TRENDS IN PLANT SCIENCE 2018;23:794-807. [PMID: 30007571 PMCID: PMC6128410 DOI: 10.1016/j.tplants.2018.06.005] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Revised: 06/04/2018] [Accepted: 06/07/2018] [Indexed: 05/20/2023]
29
Zhang S, Liu S, Zhang J, Reiter RJ, Wang Y, Qiu D, Luo X, Khalid AR, Wang H, Feng L, Lin Z, Ren M. Synergistic anti-oomycete effect of melatonin with a biofungicide against oomycetic black shank disease. J Pineal Res 2018;65:e12492. [PMID: 29575191 DOI: 10.1111/jpi.12492] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/10/2018] [Accepted: 03/09/2018] [Indexed: 01/19/2023]
30
Annenkova NV, Ahrén D, Logares R, Kremp A, Rengefors K. Delineating closely related dinoflagellate lineages using phylotranscriptomics. JOURNAL OF PHYCOLOGY 2018;54:571-576. [PMID: 29676790 DOI: 10.1111/jpy.12748] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2017] [Accepted: 04/05/2018] [Indexed: 06/08/2023]
31
Chen F, Zhang L, Lin Z, Cheng ZMM. Identification of a novel fused gene family implicates convergent evolution in eukaryotic calcium signaling. BMC Genomics 2018;19:306. [PMID: 29703146 PMCID: PMC5924475 DOI: 10.1186/s12864-018-4685-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Accepted: 04/16/2018] [Indexed: 12/31/2022]  Open
32
Záhonová K, Petrželková R, Valach M, Yazaki E, Tikhonenkov DV, Butenko A, Janouškovec J, Hrdá Š, Klimeš V, Burger G, Inagaki Y, Keeling PJ, Hampl V, Flegontov P, Yurchenko V, Eliáš M. Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase. Sci Rep 2018;8:5239. [PMID: 29588502 PMCID: PMC5869587 DOI: 10.1038/s41598-018-23575-0] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2017] [Accepted: 03/15/2018] [Indexed: 02/07/2023]  Open
33
Grattepanche J, Walker LM, Ott BM, Paim Pinto DL, Delwiche CF, Lane CE, Katz LA. Microbial Diversity in the Eukaryotic SAR Clade: Illuminating the Darkness Between Morphology and Molecular Data. Bioessays 2018;40:e1700198. [DOI: 10.1002/bies.201700198] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2017] [Revised: 01/16/2018] [Indexed: 01/09/2023]
34
Pelz T, Drose DR, Fleck D, Henkel B, Ackels T, Spehr M, Neuhaus EM. An ancestral TMEM16 homolog from Dictyostelium discoideum forms a scramblase. PLoS One 2018;13:e0191219. [PMID: 29444117 PMCID: PMC5812556 DOI: 10.1371/journal.pone.0191219] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Accepted: 12/29/2017] [Indexed: 01/11/2023]  Open
35
Cavalier-Smith T. Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences. PROTOPLASMA 2018;255:297-357. [PMID: 28875267 PMCID: PMC5756292 DOI: 10.1007/s00709-017-1147-3] [Citation(s) in RCA: 74] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Accepted: 07/18/2017] [Indexed: 05/18/2023]
36
Chaib De Mares M, Sipkema D, Huang S, Bunk B, Overmann J, van Elsas JD. Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera. Front Microbiol 2017;8:2560. [PMID: 29326681 PMCID: PMC5742488 DOI: 10.3389/fmicb.2017.02560] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Accepted: 12/11/2017] [Indexed: 02/01/2023]  Open
37
Abrahamian M, Kagda M, Ah-Fong AMV, Judelson HS. Rethinking the evolution of eukaryotic metabolism: novel cellular partitioning of enzymes in stramenopiles links serine biosynthesis to glycolysis in mitochondria. BMC Evol Biol 2017;17:241. [PMID: 29202688 PMCID: PMC5715807 DOI: 10.1186/s12862-017-1087-8] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2017] [Accepted: 11/21/2017] [Indexed: 12/17/2022]  Open
38
Are Thraustochytrids algae? Fungal Biol 2017;121:835-840. [DOI: 10.1016/j.funbio.2017.07.006] [Citation(s) in RCA: 72] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2017] [Revised: 07/25/2017] [Accepted: 07/26/2017] [Indexed: 12/30/2022]
39
A D Neilson J, Rangsrikitphoti P, Durnford DG. Evolution and regulation of Bigelowiella natans light-harvesting antenna system. JOURNAL OF PLANT PHYSIOLOGY 2017;217:68-76. [PMID: 28619535 DOI: 10.1016/j.jplph.2017.05.019] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2017] [Revised: 05/16/2017] [Accepted: 05/22/2017] [Indexed: 05/27/2023]
40
Jayaswal PK, Dogra V, Shanker A, Sharma TR, Singh NK. A tree of life based on ninety-eight expressed genes conserved across diverse eukaryotic species. PLoS One 2017;12:e0184276. [PMID: 28922368 PMCID: PMC5603157 DOI: 10.1371/journal.pone.0184276] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2017] [Accepted: 08/21/2017] [Indexed: 01/07/2023]  Open
41
Dzhembekova N, Urusizaki S, Moncheva S, Ivanova P, Nagai S. Applicability of massively parallel sequencing on monitoring harmful algae at Varna Bay in the Black Sea. HARMFUL ALGAE 2017;68:40-51. [PMID: 28962989 DOI: 10.1016/j.hal.2017.07.004] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Revised: 07/04/2017] [Accepted: 07/17/2017] [Indexed: 06/07/2023]
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Phylogenomic Reconstruction of the Oomycete Phylogeny Derived from 37 Genomes. mSphere 2017;2:mSphere00095-17. [PMID: 28435885 PMCID: PMC5390094 DOI: 10.1128/msphere.00095-17] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Accepted: 03/24/2017] [Indexed: 12/17/2022]  Open
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Chen F, Liu X, Yu C, Chen Y, Tang H, Zhang L. Water lilies as emerging models for Darwin's abominable mystery. HORTICULTURE RESEARCH 2017;4:17051. [PMID: 28979789 PMCID: PMC5626932 DOI: 10.1038/hortres.2017.51] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2017] [Revised: 06/30/2017] [Accepted: 07/26/2017] [Indexed: 05/02/2023]
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Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ. Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nat Rev Microbiol 2016;15:6-20. [DOI: 10.1038/nrmicro.2016.160] [Citation(s) in RCA: 128] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Kim E, Sprung B, Duhamel S, Filardi C, Kyoon Shin M. Oligotrophic lagoons of the South Pacific Ocean are home to a surprising number of novel eukaryotic microorganisms. Environ Microbiol 2016;18:4549-4563. [PMID: 27581800 DOI: 10.1111/1462-2920.13523] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2016] [Accepted: 08/30/2016] [Indexed: 12/20/2022]
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Richardson E, Zerr K, Tsaousis A, Dorrell RG, Dacks JB. Evolutionary cell biology: functional insight from "endless forms most beautiful". Mol Biol Cell 2016;26:4532-8. [PMID: 26668171 PMCID: PMC4678011 DOI: 10.1091/mbc.e14-10-1433] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]  Open
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Systematic Search for Evidence of Interdomain Horizontal Gene Transfer from Prokaryotes to Oomycete Lineages. mSphere 2016;1:mSphere00195-16. [PMID: 27642638 PMCID: PMC5023847 DOI: 10.1128/msphere.00195-16] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Accepted: 08/26/2016] [Indexed: 12/19/2022]  Open
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Evolution of the microtubular cytoskeleton (flagellar apparatus) in parasitic protists. Mol Biochem Parasitol 2016;209:26-34. [DOI: 10.1016/j.molbiopara.2016.02.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2015] [Revised: 02/02/2016] [Accepted: 02/05/2016] [Indexed: 01/16/2023]
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Derelle R, López-García P, Timpano H, Moreira D. A Phylogenomic Framework to Study the Diversity and Evolution of Stramenopiles (=Heterokonts). Mol Biol Evol 2016;33:2890-2898. [PMID: 27512113 DOI: 10.1093/molbev/msw168] [Citation(s) in RCA: 82] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
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He D, Sierra R, Pawlowski J, Baldauf SL. Reducing long-branch effects in multi-protein data uncovers a close relationship between Alveolata and Rhizaria. Mol Phylogenet Evol 2016;101:1-7. [DOI: 10.1016/j.ympev.2016.04.033] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2014] [Revised: 03/23/2016] [Accepted: 04/26/2016] [Indexed: 12/22/2022]
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