1
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Farahani MV, Shariatpanahi SP, Goliaei B. A computational model elucidating mechanisms and variability in theta burst stimulation responses. J Comput Neurosci 2024; 52:183-196. [PMID: 39120822 DOI: 10.1007/s10827-024-00875-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Revised: 04/22/2024] [Accepted: 07/17/2024] [Indexed: 08/10/2024]
Abstract
Theta burst stimulation (TBS) is a form of repetitive transcranial magnetic stimulation (rTMS) with unknown underlying mechanisms and highly variable responses across subjects. To investigate these issues, we developed a simple computational model. Our model consisted of two neurons linked by an excitatory synapse that incorporates two mechanisms: short-term plasticity (STP) and spike-timing-dependent plasticity (STDP). We applied a variable-amplitude current through I-clamp with a TBS time pattern to the pre- and post-synaptic neurons, simulating synaptic plasticity. We analyzed the results and provided an explanation for the effects of TBS, as well as the variability of responses to it. Our findings suggest that the interplay of STP and STDP mechanisms determines the direction of plasticity, which selectively affects synapses in extended neurons and underlies functional effects. Our model describes how the timing, number, and intensity of pulses delivered to neurons during rTMS contribute to induced plasticity. This not only successfully explains the different effects of intermittent TBS (iTBS) and continuous TBS (cTBS), but also predicts the results of other protocols such as 10 Hz rTMS. We propose that the variability in responses to TBS can be attributed to the variable span of neuronal thresholds across individuals and sessions. Our model suggests a biologically plausible mechanism for the diverse responses to TBS protocols and aligns with experimental data on iTBS and cTBS outcomes. This model could potentially aid in improving TBS and rTMS protocols and customizing treatments for patients, brain areas, and brain disorders.
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Affiliation(s)
| | | | - Bahram Goliaei
- Institute of Biochemistry and Biophysics, University of Tehran, P.O.Box, 13145-1384, Tehran, Iran
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2
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Haşegan D, Deible M, Earl C, D’Onofrio D, Hazan H, Anwar H, Neymotin SA. Training spiking neuronal networks to perform motor control using reinforcement and evolutionary learning. Front Comput Neurosci 2022; 16:1017284. [PMID: 36249482 PMCID: PMC9563231 DOI: 10.3389/fncom.2022.1017284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 08/31/2022] [Indexed: 11/13/2022] Open
Abstract
Artificial neural networks (ANNs) have been successfully trained to perform a wide range of sensory-motor behaviors. In contrast, the performance of spiking neuronal network (SNN) models trained to perform similar behaviors remains relatively suboptimal. In this work, we aimed to push the field of SNNs forward by exploring the potential of different learning mechanisms to achieve optimal performance. We trained SNNs to solve the CartPole reinforcement learning (RL) control problem using two learning mechanisms operating at different timescales: (1) spike-timing-dependent reinforcement learning (STDP-RL) and (2) evolutionary strategy (EVOL). Though the role of STDP-RL in biological systems is well established, several other mechanisms, though not fully understood, work in concert during learning in vivo. Recreating accurate models that capture the interaction of STDP-RL with these diverse learning mechanisms is extremely difficult. EVOL is an alternative method and has been successfully used in many studies to fit model neural responsiveness to electrophysiological recordings and, in some cases, for classification problems. One advantage of EVOL is that it may not need to capture all interacting components of synaptic plasticity and thus provides a better alternative to STDP-RL. Here, we compared the performance of each algorithm after training, which revealed EVOL as a powerful method for training SNNs to perform sensory-motor behaviors. Our modeling opens up new capabilities for SNNs in RL and could serve as a testbed for neurobiologists aiming to understand multi-timescale learning mechanisms and dynamics in neuronal circuits.
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Affiliation(s)
- Daniel Haşegan
- Vilcek Institute of Graduate Biomedical Sciences, NYU Grossman School of Medicine, New York, NY, United States
| | - Matt Deible
- Department of Computer Science, University of Pittsburgh, Pittsburgh, PA, United States
| | - Christopher Earl
- Department of Computer Science, University of Massachusetts Amherst, Amherst, MA, United States
| | - David D’Onofrio
- Center for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, United States
| | - Hananel Hazan
- Allen Discovery Center, Tufts University, Boston, MA, United States
| | - Haroon Anwar
- Center for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, United States
| | - Samuel A. Neymotin
- Center for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, United States
- Department of Psychiatry, NYU Grossman School of Medicine, New York, NY, United States
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3
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Bio-Inspired Control System for Fingers Actuated by Multiple SMA Actuators. Biomimetics (Basel) 2022; 7:biomimetics7020062. [PMID: 35645189 PMCID: PMC9149821 DOI: 10.3390/biomimetics7020062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2022] [Revised: 05/07/2022] [Accepted: 05/10/2022] [Indexed: 11/30/2022] Open
Abstract
Spiking neural networks are able to control with high precision the rotation and force of single-joint robotic arms when shape memory alloy wires are used for actuation. Bio-inspired robotic arms such as anthropomorphic fingers include more junctions that are actuated simultaneously. Starting from the hypothesis that the motor cortex groups the control of multiple muscles into neural synergies, this work presents for the first time an SNN structure that is able to control a series of finger motions by activation of groups of neurons that drive the corresponding actuators in sequence. The initial motion starts when a command signal is received, while the subsequent ones are initiated based on the sensors’ output. In order to increase the biological plausibility of the control system, the finger is flexed and extended by four SMA wires connected to the phalanges as the main tendons. The results show that the artificial finger that is controlled by the SNN is able to smoothly perform several motions of the human index finger while the command signal is active. To evaluate the advantages of using SNN, we compared the finger behaviours when the SMA actuators are driven by SNN, and by a microcontroller, respectively. In addition, we designed an electronic circuit that models the sensor’s output in concordance with the SNN output.
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4
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Anwar H, Caby S, Dura-Bernal S, D’Onofrio D, Hasegan D, Deible M, Grunblatt S, Chadderdon GL, Kerr CC, Lakatos P, Lytton WW, Hazan H, Neymotin SA. Training a spiking neuronal network model of visual-motor cortex to play a virtual racket-ball game using reinforcement learning. PLoS One 2022; 17:e0265808. [PMID: 35544518 PMCID: PMC9094569 DOI: 10.1371/journal.pone.0265808] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Accepted: 03/08/2022] [Indexed: 11/18/2022] Open
Abstract
Recent models of spiking neuronal networks have been trained to perform behaviors in static environments using a variety of learning rules, with varying degrees of biological realism. Most of these models have not been tested in dynamic visual environments where models must make predictions on future states and adjust their behavior accordingly. The models using these learning rules are often treated as black boxes, with little analysis on circuit architectures and learning mechanisms supporting optimal performance. Here we developed visual/motor spiking neuronal network models and trained them to play a virtual racket-ball game using several reinforcement learning algorithms inspired by the dopaminergic reward system. We systematically investigated how different architectures and circuit-motifs (feed-forward, recurrent, feedback) contributed to learning and performance. We also developed a new biologically-inspired learning rule that significantly enhanced performance, while reducing training time. Our models included visual areas encoding game inputs and relaying the information to motor areas, which used this information to learn to move the racket to hit the ball. Neurons in the early visual area relayed information encoding object location and motion direction across the network. Neuronal association areas encoded spatial relationships between objects in the visual scene. Motor populations received inputs from visual and association areas representing the dorsal pathway. Two populations of motor neurons generated commands to move the racket up or down. Model-generated actions updated the environment and triggered reward or punishment signals that adjusted synaptic weights so that the models could learn which actions led to reward. Here we demonstrate that our biologically-plausible learning rules were effective in training spiking neuronal network models to solve problems in dynamic environments. We used our models to dissect the circuit architectures and learning rules most effective for learning. Our model shows that learning mechanisms involving different neural circuits produce similar performance in sensory-motor tasks. In biological networks, all learning mechanisms may complement one another, accelerating the learning capabilities of animals. Furthermore, this also highlights the resilience and redundancy in biological systems.
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Affiliation(s)
- Haroon Anwar
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
| | - Simon Caby
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
| | - Salvador Dura-Bernal
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
- Dept. Physiology & Pharmacology, State University of New York Downstate, Brooklyn, New York, United States of America
| | - David D’Onofrio
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
| | - Daniel Hasegan
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
| | - Matt Deible
- University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
| | - Sara Grunblatt
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
| | - George L. Chadderdon
- Dept. Physiology & Pharmacology, State University of New York Downstate, Brooklyn, New York, United States of America
| | - Cliff C. Kerr
- Dept Physics, University of Sydney, Sydney, Australia
- Institute for Disease Modeling, Global Health Division, Bill & Melinda Gates Foundation, Seattle, Washington, United States of America
| | - Peter Lakatos
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
- Dept. Psychiatry, NYU Grossman School of Medicine, New York, New York, United States of America
| | - William W. Lytton
- Dept. Physiology & Pharmacology, State University of New York Downstate, Brooklyn, New York, United States of America
- Dept Neurology, Kings County Hospital Center, Brooklyn, New York, United States of America
| | - Hananel Hazan
- Dept of Biology, Tufts University, Medford, Massachusetts, United States of America
| | - Samuel A. Neymotin
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America
- Dept. Psychiatry, NYU Grossman School of Medicine, New York, New York, United States of America
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5
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Zhang Y, Pan X, Wang Y. Category learning in a recurrent neural network with reinforcement learning. Front Psychiatry 2022; 13:1008011. [PMID: 36387007 PMCID: PMC9640766 DOI: 10.3389/fpsyt.2022.1008011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Accepted: 10/10/2022] [Indexed: 11/13/2022] Open
Abstract
It is known that humans and animals can learn and utilize category information quickly and efficiently to adapt to changing environments, and several brain areas are involved in learning and encoding category information. However, it is unclear that how the brain system learns and forms categorical representations from the view of neural circuits. In order to investigate this issue from the network level, we combine a recurrent neural network with reinforcement learning to construct a deep reinforcement learning model to demonstrate how the category is learned and represented in the network. The model consists of a policy network and a value network. The policy network is responsible for updating the policy to choose actions, while the value network is responsible for evaluating the action to predict rewards. The agent learns dynamically through the information interaction between the policy network and the value network. This model was trained to learn six stimulus-stimulus associative chains in a sequential paired-association task that was learned by the monkey. The simulated results demonstrated that our model was able to learn the stimulus-stimulus associative chains, and successfully reproduced the similar behavior of the monkey performing the same task. Two types of neurons were found in this model: one type primarily encoded identity information about individual stimuli; the other type mainly encoded category information of associated stimuli in one chain. The two types of activity-patterns were also observed in the primate prefrontal cortex after the monkey learned the same task. Furthermore, the ability of these two types of neurons to encode stimulus or category information was enhanced during this model was learning the task. Our results suggest that the neurons in the recurrent neural network have the ability to form categorical representations through deep reinforcement learning during learning stimulus-stimulus associations. It might provide a new approach for understanding neuronal mechanisms underlying how the prefrontal cortex learns and encodes category information.
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Affiliation(s)
- Ying Zhang
- Institute for Cognitive Neurodynamics, East China University of Science and Technology, Shanghai, China
| | - Xiaochuan Pan
- Institute for Cognitive Neurodynamics, East China University of Science and Technology, Shanghai, China
| | - Yihong Wang
- Institute for Cognitive Neurodynamics, East China University of Science and Technology, Shanghai, China
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6
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Azimirad V, Ramezanlou MT, Sotubadi SV, Janabi-Sharifi F. A consecutive hybrid spiking-convolutional (CHSC) neural controller for sequential decision making in robots. Neurocomputing 2021. [DOI: 10.1016/j.neucom.2021.11.097] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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7
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Adaptive SNN for Anthropomorphic Finger Control. SENSORS 2021; 21:s21082730. [PMID: 33924453 PMCID: PMC8069700 DOI: 10.3390/s21082730] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 04/09/2021] [Accepted: 04/10/2021] [Indexed: 11/16/2022]
Abstract
Anthropomorphic hands that mimic the smoothness of human hand motions should be controlled by artificial units of high biological plausibility. Adaptability is among the characteristics of such control units, which provides the anthropomorphic hand with the ability to learn motions. This paper presents a simple structure of an adaptive spiking neural network implemented in analogue hardware that can be trained using Hebbian learning mechanisms to rotate the metacarpophalangeal joint of a robotic finger towards targeted angle intervals. Being bioinspired, the spiking neural network drives actuators made of shape memory alloy and receives feedback from neuromorphic sensors that convert the joint rotation angle and compression force into the spiking frequency. The adaptive SNN activates independent neural paths that correspond to angle intervals and learns in which of these intervals the rotation the finger rotation is stopped by an external force. Learning occurs when angle-specific neural paths are stimulated concurrently with the supraliminar stimulus that activates all the neurons that inhibit the SNN output stopping the finger. The results showed that after learning, the finger stopped in the angle interval in which the angle-specific neural path was active, without the activation of the supraliminar stimulus. The proposed concept can be used to implement control units for anthropomorphic robots that are able to learn motions unsupervised, based on principles of high biological plausibility.
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8
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Tieck JCV, Schnell T, Kaiser J, Mauch F, Roennau A, Dillmann R. Generating Pointing Motions for a Humanoid Robot by Combining Motor Primitives. Front Neurorobot 2019; 13:77. [PMID: 31619981 PMCID: PMC6759768 DOI: 10.3389/fnbot.2019.00077] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Accepted: 09/02/2019] [Indexed: 02/04/2023] Open
Abstract
The human motor system is robust, adaptive and very flexible. The underlying principles of human motion provide inspiration for robotics. Pointing at different targets is a common robotics task, where insights about human motion can be applied. Traditionally in robotics, when a motion is generated it has to be validated so that the robot configurations involved are appropriate. The human brain, in contrast, uses the motor cortex to generate new motions reusing and combining existing knowledge before executing the motion. We propose a method to generate and control pointing motions for a robot using a biological inspired architecture implemented with spiking neural networks. We outline a simplified model of the human motor cortex that generates motions using motor primitives. The network learns a base motor primitive for pointing at a target in the center, and four correction primitives to point at targets up, down, left and right from the base primitive, respectively. The primitives are combined to reach different targets. We evaluate the performance of the network with a humanoid robot pointing at different targets marked on a plane. The network was able to combine one, two or three motor primitives at the same time to control the robot in real-time to reach a specific target. We work on extending this work from pointing to a given target to performing a grasping or tool manipulation task. This has many applications for engineering and industry involving real robots.
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Affiliation(s)
| | - Tristan Schnell
- FZI Research Center for Information Technology, Karlsruhe, Germany
| | - Jacques Kaiser
- FZI Research Center for Information Technology, Karlsruhe, Germany
| | - Felix Mauch
- FZI Research Center for Information Technology, Karlsruhe, Germany
| | - Arne Roennau
- FZI Research Center for Information Technology, Karlsruhe, Germany
| | - Rüdiger Dillmann
- FZI Research Center for Information Technology, Karlsruhe, Germany.,Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
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9
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Bing Z, Meschede C, Röhrbein F, Huang K, Knoll AC. A Survey of Robotics Control Based on Learning-Inspired Spiking Neural Networks. Front Neurorobot 2018; 12:35. [PMID: 30034334 PMCID: PMC6043678 DOI: 10.3389/fnbot.2018.00035] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Accepted: 06/14/2018] [Indexed: 11/30/2022] Open
Abstract
Biological intelligence processes information using impulses or spikes, which makes those living creatures able to perceive and act in the real world exceptionally well and outperform state-of-the-art robots in almost every aspect of life. To make up the deficit, emerging hardware technologies and software knowledge in the fields of neuroscience, electronics, and computer science have made it possible to design biologically realistic robots controlled by spiking neural networks (SNNs), inspired by the mechanism of brains. However, a comprehensive review on controlling robots based on SNNs is still missing. In this paper, we survey the developments of the past decade in the field of spiking neural networks for control tasks, with particular focus on the fast emerging robotics-related applications. We first highlight the primary impetuses of SNN-based robotics tasks in terms of speed, energy efficiency, and computation capabilities. We then classify those SNN-based robotic applications according to different learning rules and explicate those learning rules with their corresponding robotic applications. We also briefly present some existing platforms that offer an interaction between SNNs and robotics simulations for exploration and exploitation. Finally, we conclude our survey with a forecast of future challenges and some associated potential research topics in terms of controlling robots based on SNNs.
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Affiliation(s)
- Zhenshan Bing
- Chair of Robotics, Artificial Intelligence and Real-time Systems, Department of Informatics, Technical University of Munich, Munich, Germany
| | - Claus Meschede
- Chair of Robotics, Artificial Intelligence and Real-time Systems, Department of Informatics, Technical University of Munich, Munich, Germany
| | - Florian Röhrbein
- Chair of Robotics, Artificial Intelligence and Real-time Systems, Department of Informatics, Technical University of Munich, Munich, Germany
| | - Kai Huang
- Department of Data and Computer Science, Sun Yat-Sen University, Guangzhou, China
| | - Alois C. Knoll
- Chair of Robotics, Artificial Intelligence and Real-time Systems, Department of Informatics, Technical University of Munich, Munich, Germany
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10
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Bio-inspired spiking neural network for nonlinear systems control. Neural Netw 2018; 104:15-25. [PMID: 29702424 DOI: 10.1016/j.neunet.2018.04.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2017] [Revised: 02/08/2018] [Accepted: 04/03/2018] [Indexed: 11/21/2022]
Abstract
Spiking neural networks (SNN) are the third generation of artificial neural networks. SNN are the closest approximation to biological neural networks. SNNs make use of temporal spike trains to command inputs and outputs, allowing a faster and more complex computation. As demonstrated by biological organisms, they are a potentially good approach to designing controllers for highly nonlinear dynamic systems in which the performance of controllers developed by conventional techniques is not satisfactory or difficult to implement. SNN-based controllers exploit their ability for online learning and self-adaptation to evolve when transferred from simulations to the real world. SNN's inherent binary and temporary way of information codification facilitates their hardware implementation compared to analog neurons. Biological neural networks often require a lower number of neurons compared to other controllers based on artificial neural networks. In this work, these neuronal systems are imitated to perform the control of non-linear dynamic systems. For this purpose, a control structure based on spiking neural networks has been designed. Particular attention has been paid to optimizing the structure and size of the neural network. The proposed structure is able to control dynamic systems with a reduced number of neurons and connections. A supervised learning process using evolutionary algorithms has been carried out to perform controller training. The efficiency of the proposed network has been verified in two examples of dynamic systems control. Simulations show that the proposed control based on SNN exhibits superior performance compared to other approaches based on Neural Networks and SNNs.
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11
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Sanda P, Skorheim S, Bazhenov M. Multi-layer network utilizing rewarded spike time dependent plasticity to learn a foraging task. PLoS Comput Biol 2017; 13:e1005705. [PMID: 28961245 PMCID: PMC5636167 DOI: 10.1371/journal.pcbi.1005705] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2017] [Revised: 10/11/2017] [Accepted: 07/26/2017] [Indexed: 12/01/2022] Open
Abstract
Neural networks with a single plastic layer employing reward modulated spike time dependent plasticity (STDP) are capable of learning simple foraging tasks. Here we demonstrate advanced pattern discrimination and continuous learning in a network of spiking neurons with multiple plastic layers. The network utilized both reward modulated and non-reward modulated STDP and implemented multiple mechanisms for homeostatic regulation of synaptic efficacy, including heterosynaptic plasticity, gain control, output balancing, activity normalization of rewarded STDP and hard limits on synaptic strength. We found that addition of a hidden layer of neurons employing non-rewarded STDP created neurons that responded to the specific combinations of inputs and thus performed basic classification of the input patterns. When combined with a following layer of neurons implementing rewarded STDP, the network was able to learn, despite the absence of labeled training data, discrimination between rewarding patterns and the patterns designated as punishing. Synaptic noise allowed for trial-and-error learning that helped to identify the goal-oriented strategies which were effective in task solving. The study predicts a critical set of properties of the spiking neuronal network with STDP that was sufficient to solve a complex foraging task involving pattern classification and decision making. This study explores how intelligent behavior emerges from the basic principles known at the cellular level of biological neuronal network dynamics. Compared to the approaches used in the artificial intelligence community, we applied biologically realistic modeling of neuronal dynamics and plasticity. The building blocks of the model are spiking neurons, spike-time dependent plasticity (STDP) and homeostatic rules, known experimentally, which are shown to play a fundamental role in both keeping the network stable and capable of continous learning. Our study predicts that a combination of these principles makes possible a foraging behavior in a previously unknown environment, including pattern classification to distinct between environment shapes which are rewarded and those which are punished and decision making to select the optimal strategy to acquire the maximal number of the rewarded elements. To solve this complex task we used multi-layer neuronal processing that implemented pattern generalization by unsupervised STDP at the earlier processing step, as commonly observed in the animal and human sensory processing, followed by reinforcement learning at the later steps. In the model, the intelligent behavior emerged spontaneously due to the network organization implementing both local unsupervised plasticity and reward feedback resulting from a successful behavior in the environment.
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Affiliation(s)
- Pavel Sanda
- Department of Medicine, University of California, San Diego, La Jolla, California, United States of America
| | - Steven Skorheim
- Information and Systems Sciences Lab, HRL Laboratories, LLC, Malibu, California, United States of America
| | - Maxim Bazhenov
- Department of Medicine, University of California, San Diego, La Jolla, California, United States of America
- * E-mail:
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12
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Dura-Bernal S, Neymotin SA, Kerr CC, Sivagnanam S, Majumdar A, Francis JT, Lytton WW. Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM JOURNAL OF RESEARCH AND DEVELOPMENT 2017; 61:6.1-6.14. [PMID: 29200477 PMCID: PMC5708558 DOI: 10.1147/jrd.2017.2656758] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Biomimetic simulation permits neuroscientists to better understand the complex neuronal dynamics of the brain. Embedding a biomimetic simulation in a closed-loop neuroprosthesis, which can read and write signals from the brain, will permit applications for amelioration of motor, psychiatric, and memory-related brain disorders. Biomimetic neuroprostheses require real-time adaptation to changes in the external environment, thus constituting an example of a dynamic data-driven application system. As model fidelity increases, so does the number of parameters and the complexity of finding appropriate parameter configurations. Instead of adapting synaptic weights via machine learning, we employed major biological learning methods: spike-timing dependent plasticity and reinforcement learning. We optimized the learning metaparameters using evolutionary algorithms, which were implemented in parallel and which used an island model approach to obtain sufficient speed. We employed these methods to train a cortical spiking model to utilize macaque brain activity, indicating a selected target, to drive a virtual musculoskeletal arm with realistic anatomical and biomechanical properties to reach to that target. The optimized system was able to reproduce macaque data from a comparable experimental motor task. These techniques can be used to efficiently tune the parameters of multiscale systems, linking realistic neuronal dynamics to behavior, and thus providing a useful tool for neuroscience and neuroprosthetics.
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13
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Sinapayen L, Masumori A, Ikegami T. Learning by stimulation avoidance: A principle to control spiking neural networks dynamics. PLoS One 2017; 12:e0170388. [PMID: 28158309 PMCID: PMC5291507 DOI: 10.1371/journal.pone.0170388] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2016] [Accepted: 12/31/2016] [Indexed: 11/29/2022] Open
Abstract
Learning based on networks of real neurons, and learning based on biologically inspired models of neural networks, have yet to find general learning rules leading to widespread applications. In this paper, we argue for the existence of a principle allowing to steer the dynamics of a biologically inspired neural network. Using carefully timed external stimulation, the network can be driven towards a desired dynamical state. We term this principle "Learning by Stimulation Avoidance" (LSA). We demonstrate through simulation that the minimal sufficient conditions leading to LSA in artificial networks are also sufficient to reproduce learning results similar to those obtained in biological neurons by Shahaf and Marom, and in addition explains synaptic pruning. We examined the underlying mechanism by simulating a small network of 3 neurons, then scaled it up to a hundred neurons. We show that LSA has a higher explanatory power than existing hypotheses about the response of biological neural networks to external simulation, and can be used as a learning rule for an embodied application: learning of wall avoidance by a simulated robot. In other works, reinforcement learning with spiking networks can be obtained through global reward signals akin simulating the dopamine system; we believe that this is the first project demonstrating sensory-motor learning with random spiking networks through Hebbian learning relying on environmental conditions without a separate reward system.
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Affiliation(s)
- Lana Sinapayen
- The University of Tokyo, Ikegami Laboratory, Tokyo, Japan
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14
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Lee G, Matsunaga A, Dura-Bernal S, Zhang W, Lytton WW, Francis JT, Fortes JA. Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models. ACTA ACUST UNITED AC 2015; 3:1-23. [PMID: 26702394 PMCID: PMC4685709 DOI: 10.1186/s40244-014-0012-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Development of more sophisticated implantable brain-machine interface (BMI) will require both interpretation of the neurophysiological data being measured and subsequent determination of signals to be delivered back to the brain. Computational models are the heart of the machine of BMI and therefore an essential tool in both of these processes. One approach is to utilize brain biomimetic models (BMMs) to develop and instantiate these algorithms. These then must be connected as hybrid systems in order to interface the BMM with in vivo data acquisition devices and prosthetic devices. The combined system then provides a test bed for neuroprosthetic rehabilitative solutions and medical devices for the repair and enhancement of damaged brain. We propose here a computer network-based design for this purpose, detailing its internal modules and data flows. We describe a prototype implementation of the design, enabling interaction between the Plexon Multichannel Acquisition Processor (MAP) server, a commercial tool to collect signals from microelectrodes implanted in a live subject and a BMM, a NEURON-based model of sensorimotor cortex capable of controlling a virtual arm. The prototype implementation supports an online mode for real-time simulations, as well as an offline mode for data analysis and simulations without real-time constraints, and provides binning operations to discretize continuous input to the BMM and filtering operations for dealing with noise. Evaluation demonstrated that the implementation successfully delivered monkey spiking activity to the BMM through LAN environments, respecting real-time constraints.
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Affiliation(s)
- Giljae Lee
- Department of Electrical and Computer Engineering, University of Florida, P.O. Box 116200, 216 Larsen Hall, Gainesville 32611, FL, USA
| | - Andréa Matsunaga
- Department of Electrical and Computer Engineering, University of Florida, P.O. Box 116200, 216 Larsen Hall, Gainesville 32611, FL, USA
| | - Salvador Dura-Bernal
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn 11203, NY, USA
| | - Wenjie Zhang
- Department of Electrical and Computer Engineering, University of Florida, P.O. Box 116200, 216 Larsen Hall, Gainesville 32611, FL, USA
| | - William W Lytton
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Department of Neurology, State University New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Department of Neurology, Kings County Hospital, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Joint Program in Biomedical Engineering at Polytechnic Institute of New York University and State University of New York Downstate, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Program in Neural and Behavioral Science at State University of New York Downstate, 450 Clarkson Avenue, Brooklyn, NY, 11203, USA ; The Robert F. Furchgott Center for Neural & Behavioral Science, State University of New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn, NY, 11203, USA
| | - Joseph T Francis
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Joint Program in Biomedical Engineering at Polytechnic Institute of New York University and State University of New York Downstate, 450 Clarkson Avenue, Brooklyn 11203, NY, USA ; Program in Neural and Behavioral Science at State University of New York Downstate, 450 Clarkson Avenue, Brooklyn, NY, 11203, USA ; The Robert F. Furchgott Center for Neural & Behavioral Science, State University of New York Downstate Medical Center, 450 Clarkson Avenue, Brooklyn, NY, 11203, USA
| | - José Ab Fortes
- Department of Electrical and Computer Engineering, University of Florida, P.O. Box 116200, 216 Larsen Hall, Gainesville 32611, FL, USA ; Department of Computer and Information Science and Engineering, University of Florida, P.O. Box 116120, E301 CSE Building, Gainesville 32611, FL, USA
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15
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Dura-Bernal S, Zhou X, Neymotin SA, Przekwas A, Francis JT, Lytton WW. Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm. Front Neurorobot 2015; 9:13. [PMID: 26635598 PMCID: PMC4658435 DOI: 10.3389/fnbot.2015.00013] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2015] [Accepted: 11/09/2015] [Indexed: 11/13/2022] Open
Abstract
Embedding computational models in the physical world is a critical step towards constraining their behavior and building practical applications. Here we aim to drive a realistic musculoskeletal arm model using a biomimetic cortical spiking model, and make a robot arm reproduce the same trajectories in real time. Our cortical model consisted of a 3-layered cortex, composed of several hundred spiking model-neurons, which display physiologically realistic dynamics. We interconnected the cortical model to a two-joint musculoskeletal model of a human arm, with realistic anatomical and biomechanical properties. The virtual arm received muscle excitations from the neuronal model, and fed back proprioceptive information, forming a closed-loop system. The cortical model was trained using spike timing-dependent reinforcement learning to drive the virtual arm in a 2D reaching task. Limb position was used to simultaneously control a robot arm using an improved network interface. Virtual arm muscle activations responded to motoneuron firing rates, with virtual arm muscles lengths encoded via population coding in the proprioceptive population. After training, the virtual arm performed reaching movements which were smoother and more realistic than those obtained using a simplistic arm model. This system provided access to both spiking network properties and to arm biophysical properties, including muscle forces. The use of a musculoskeletal virtual arm and the improved control system allowed the robot arm to perform movements which were smoother than those reported in our previous paper using a simplistic arm. This work provides a novel approach consisting of bidirectionally connecting a cortical model to a realistic virtual arm, and using the system output to drive a robotic arm in real time. Our techniques are applicable to the future development of brain neuroprosthetic control systems, and may enable enhanced brain-machine interfaces with the possibility for finer control of limb prosthetics.
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Affiliation(s)
- Salvador Dura-Bernal
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA
| | | | - Samuel A Neymotin
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA
| | | | - Joseph T Francis
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA ; The Robert Furchgott Center for Neural and Behavioral Science, State University of New York Downstate Medical Center Brooklyn, NY, USA ; Joint Graduate Program in Biomedical Engineering, State University of New York Downstate and Polytechnic Institute of New York University Brooklyn, NY, USA
| | - William W Lytton
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA ; The Robert Furchgott Center for Neural and Behavioral Science, State University of New York Downstate Medical Center Brooklyn, NY, USA ; Joint Graduate Program in Biomedical Engineering, State University of New York Downstate and Polytechnic Institute of New York University Brooklyn, NY, USA ; Department of Neurology, State University of New York Downstate Medical Center Brooklyn, NY, USA ; Department of Neurology, Kings County Hospital Center Brooklyn, NY, USA
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Kocaturk M, Gulcur HO, Canbeyli R. Toward Building Hybrid Biological/in silico Neural Networks for Motor Neuroprosthetic Control. Front Neurorobot 2015; 9:8. [PMID: 26321943 PMCID: PMC4531252 DOI: 10.3389/fnbot.2015.00008] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2015] [Accepted: 07/15/2015] [Indexed: 11/13/2022] Open
Abstract
In this article, we introduce the Bioinspired Neuroprosthetic Design Environment (BNDE) as a practical platform for the development of novel brain–machine interface (BMI) controllers, which are based on spiking model neurons. We built the BNDE around a hard real-time system so that it is capable of creating simulated synapses from extracellularly recorded neurons to model neurons. In order to evaluate the practicality of the BNDE for neuroprosthetic control experiments, a novel, adaptive BMI controller was developed and tested using real-time closed-loop simulations. The present controller consists of two in silico medium spiny neurons, which receive simulated synaptic inputs from recorded motor cortical neurons. In the closed-loop simulations, the recordings from the cortical neurons were imitated using an external, hardware-based neural signal synthesizer. By implementing a reward-modulated spike timing-dependent plasticity rule, the controller achieved perfect target reach accuracy for a two-target reaching task in one-dimensional space. The BNDE combines the flexibility of software-based spiking neural network (SNN) simulations with powerful online data visualization tools and is a low-cost, PC-based, and all-in-one solution for developing neurally inspired BMI controllers. We believe that the BNDE is the first implementation, which is capable of creating hybrid biological/in silico neural networks for motor neuroprosthetic control and utilizes multiple CPU cores for computationally intensive real-time SNN simulations.
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Affiliation(s)
- Mehmet Kocaturk
- Institute of Biomedical Engineering, Bogazici University , Istanbul , Turkey ; Department of Biomedical Engineering, Istanbul Medipol University , Istanbul , Turkey
| | - Halil Ozcan Gulcur
- Institute of Biomedical Engineering, Bogazici University , Istanbul , Turkey
| | - Resit Canbeyli
- Department of Psychology, Bogazici University , Istanbul , Turkey
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Chadderdon GL, Mohan A, Suter BA, Neymotin SA, Kerr CC, Francis JT, Shepherd GMG, Lytton WW. Motor cortex microcircuit simulation based on brain activity mapping. Neural Comput 2014; 26:1239-62. [PMID: 24708371 DOI: 10.1162/neco_a_00602] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
The deceptively simple laminar structure of neocortex belies the complexity of intra- and interlaminar connectivity. We developed a computational model based primarily on a unified set of brain activity mapping studies of mouse M1. The simulation consisted of 775 spiking neurons of 10 cell types with detailed population-to-population connectivity. Static analysis of connectivity with graph-theoretic tools revealed that the corticostriatal population showed strong centrality, suggesting that would provide a network hub. Subsequent dynamical analysis confirmed this observation, in addition to revealing network dynamics that cannot be readily predicted through analysis of the wiring diagram alone. Activation thresholds depended on the stimulated layer. Low stimulation produced transient activation, while stronger activation produced sustained oscillations where the threshold for sustained responses varied by layer: 13% in layer 2/3, 54% in layer 5A, 25% in layer 5B, and 17% in layer 6. The frequency and phase of the resulting oscillation also depended on stimulation layer. By demonstrating the effectiveness of combined static and dynamic analysis, our results show how static brain maps can be related to the results of brain activity mapping.
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Affiliation(s)
- George L Chadderdon
- Department of Physiology and Pharmacology, SUNY Downstate, Brooklyn, NY 11203
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18
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Skorheim S, Lonjers P, Bazhenov M. A spiking network model of decision making employing rewarded STDP. PLoS One 2014; 9:e90821. [PMID: 24632858 PMCID: PMC3954625 DOI: 10.1371/journal.pone.0090821] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2013] [Accepted: 02/05/2014] [Indexed: 01/08/2023] Open
Abstract
Reward-modulated spike timing dependent plasticity (STDP) combines unsupervised STDP with a reinforcement signal that modulates synaptic changes. It was proposed as a learning rule capable of solving the distal reward problem in reinforcement learning. Nonetheless, performance and limitations of this learning mechanism have yet to be tested for its ability to solve biological problems. In our work, rewarded STDP was implemented to model foraging behavior in a simulated environment. Over the course of training the network of spiking neurons developed the capability of producing highly successful decision-making. The network performance remained stable even after significant perturbations of synaptic structure. Rewarded STDP alone was insufficient to learn effective decision making due to the difficulty maintaining homeostatic equilibrium of synaptic weights and the development of local performance maxima. Our study predicts that successful learning requires stabilizing mechanisms that allow neurons to balance their input and output synapses as well as synaptic noise.
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Affiliation(s)
- Steven Skorheim
- Department of Cell Biology and Neuroscience, University of California Riverside, Riverside, California, United States of America
| | - Peter Lonjers
- Department of Cell Biology and Neuroscience, University of California Riverside, Riverside, California, United States of America
| | - Maxim Bazhenov
- Department of Cell Biology and Neuroscience, University of California Riverside, Riverside, California, United States of America
- * E-mail:
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Lytton WW, Neymotin SA, Kerr CC. Multiscale modeling for clinical translation in neuropsychiatric disease. ACTA ACUST UNITED AC 2014; 1. [PMID: 26925364 PMCID: PMC4766859 DOI: 10.1186/2194-3990-1-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Multiscale modeling of neuropsychiatric illness bridges scales of clinical importance: from the highest scales (presentation of behavioral signs and symptoms), through intermediate scales (clinical testing and surgical intervention), down to the molecular scale of pharmacotherapy. Modeling of brain disease is difficult compared to modeling of other organs, because dysfunction manifests at scales where measurements are rudimentary due both to inadequate access (memory and cognition) and to complexity (behavior). Nonetheless, we can begin to explore these aspects through the use of information-theoretic measures as stand-ins for meaning at the top scales. We here describe efforts across five disorders: Parkinson’s, Alzheimer’s, stroke, schizophrenia, and epilepsy. We look at the use of therapeutic brain stimulation to replace lost neural signals, a loss that produces diaschisis, defined as activity changes in other brain areas due to missing inputs. These changes may in some cases be compensatory, hence beneficial, but in many cases a primary pathology, whether itself static or dynamic, sets in motion a series of dynamic consequences that produce further pathology. The simulations presented here suggest how diaschisis can be reversed by using a neuroprosthetic signal. Despite having none of the information content of the lost physiological signal, the simplified neuroprosthetic signal can restore a diaschitic area to near-normal patterns of activity. Computer simulation thus begins to explain the remarkable success of stimulation technologies - deep brain stimulation, transcranial magnetic stimulation, ultrasound stimulation, transcranial direct current stimulation - across an extremely broad range of pathologies. Multiscale modeling can help us to optimize and integrate these neuroprosthetic therapies by taking into consideration effects of different stimulation protocols, combinations of stimulation with neuropharmacological therapy, and interplay of these therapeutic modalities with particular patterns of disease focality, dynamics, and prior therapies.
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Affiliation(s)
- William W Lytton
- Department of Physiology & Pharmacology and Neurology, SUNY Downstate Medical Center, Brooklyn, NY 11203, USA; Department of Neurology, Kings County Hospital, Brooklyn, NY 11203, USA
| | - Samuel A Neymotin
- Department of Physiology & Pharmacology and Neurology, SUNY Downstate Medical Center, Brooklyn, NY 11203, USA
| | - Cliff C Kerr
- Department of Physiology & Pharmacology and Neurology, SUNY Downstate Medical Center, Brooklyn, NY 11203, USA
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Dura-Bernal S, Chadderdon GL, Neymotin SA, Francis JT, Lytton WW. Towards a real-time interface between a biomimetic model of sensorimotor cortex and a robotic arm. Pattern Recognit Lett 2014; 36:204-212. [PMID: 26709323 DOI: 10.1016/j.patrec.2013.05.019] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Brain-machine interfaces can greatly improve the performance of prosthetics. Utilizing biomimetic neuronal modeling in brain machine interfaces (BMI) offers the possibility of providing naturalistic motor-control algorithms for control of a robotic limb. This will allow finer control of a robot, while also giving us new tools to better understand the brain's use of electrical signals. However, the biomimetic approach presents challenges in integrating technologies across multiple hardware and software platforms, so that the different components can communicate in real-time. We present the first steps in an ongoing effort to integrate a biomimetic spiking neuronal model of motor learning with a robotic arm. The biomimetic model (BMM) was used to drive a simple kinematic two-joint virtual arm in a motor task requiring trial-and-error convergence on a single target. We utilized the output of this model in real time to drive mirroring motion of a Barrett Technology WAM robotic arm through a user datagram protocol (UDP) interface. The robotic arm sent back information on its joint positions, which was then used by a visualization tool on the remote computer to display a realistic 3D virtual model of the moving robotic arm in real time. This work paves the way towards a full closed-loop biomimetic brain-effector system that can be incorporated in a neural decoder for prosthetic control, to be used as a platform for developing biomimetic learning algorithms for controlling real-time devices.
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Affiliation(s)
- Salvador Dura-Bernal
- Department of Physiology and Pharmacology, State University of New York Downstate, Brooklyn, New York, USA
| | - George L Chadderdon
- Department of Physiology and Pharmacology, State University of New York Downstate, Brooklyn, New York, USA
| | - Samuel A Neymotin
- Department of Neurobiology, Yale University School of Medicine, New Haven, Connecticut, USA
| | - Joseph T Francis
- Department of Physiology and Pharmacology, State University of New York Downstate, Brooklyn, New York, USA
| | - William W Lytton
- Department of Physiology and Pharmacology, State University of New York Downstate, Brooklyn, New York, USA ; Department of Neurology, State University New York Downstate, Brooklyn, New York, USA ; Department of Neurology, Kings County Hospital, Brooklyn, New York, USA
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Neymotin SA, Chadderdon GL, Kerr CC, Francis JT, Lytton WW. Reinforcement learning of two-joint virtual arm reaching in a computer model of sensorimotor cortex. Neural Comput 2013; 25:3263-93. [PMID: 24047323 DOI: 10.1162/neco_a_00521] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Neocortical mechanisms of learning sensorimotor control involve a complex series of interactions at multiple levels, from synaptic mechanisms to cellular dynamics to network connectomics. We developed a model of sensory and motor neocortex consisting of 704 spiking model neurons. Sensory and motor populations included excitatory cells and two types of interneurons. Neurons were interconnected with AMPA/NMDA and GABAA synapses. We trained our model using spike-timing-dependent reinforcement learning to control a two-joint virtual arm to reach to a fixed target. For each of 125 trained networks, we used 200 training sessions, each involving 15 s reaches to the target from 16 starting positions. Learning altered network dynamics, with enhancements to neuronal synchrony and behaviorally relevant information flow between neurons. After learning, networks demonstrated retention of behaviorally relevant memories by using proprioceptive information to perform reach-to-target from multiple starting positions. Networks dynamically controlled which joint rotations to use to reach a target, depending on current arm position. Learning-dependent network reorganization was evident in both sensory and motor populations: learned synaptic weights showed target-specific patterning optimized for particular reach movements. Our model embodies an integrative hypothesis of sensorimotor cortical learning that could be used to interpret future electrophysiological data recorded in vivo from sensorimotor learning experiments. We used our model to make the following predictions: learning enhances synchrony in neuronal populations and behaviorally relevant information flow across neuronal populations, enhanced sensory processing aids task-relevant motor performance and the relative ease of a particular movement in vivo depends on the amount of sensory information required to complete the movement.
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Affiliation(s)
- Samuel A Neymotin
- Department of Neurobiology, Yale University School of Medicine, New Haven, CT 06510, U.S.A., and Department of Physiology and Pharmacology, SUNY Downstate, Brooklyn, NY 11203, U.S.A.
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Kerr CC, Van Albada SJ, Neymotin SA, Chadderdon GL, Robinson PA, Lytton WW. Cortical information flow in Parkinson's disease: a composite network/field model. Front Comput Neurosci 2013; 7:39. [PMID: 23630492 PMCID: PMC3635017 DOI: 10.3389/fncom.2013.00039] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2013] [Accepted: 04/02/2013] [Indexed: 11/30/2022] Open
Abstract
The basal ganglia play a crucial role in the execution of movements, as demonstrated by the severe motor deficits that accompany Parkinson's disease (PD). Since motor commands originate in the cortex, an important question is how the basal ganglia influence cortical information flow, and how this influence becomes pathological in PD. To explore this, we developed a composite neuronal network/neural field model. The network model consisted of 4950 spiking neurons, divided into 15 excitatory and inhibitory cell populations in the thalamus and cortex. The field model consisted of the cortex, thalamus, striatum, subthalamic nucleus, and globus pallidus. Both models have been separately validated in previous work. Three field models were used: one with basal ganglia parameters based on data from healthy individuals, one based on data from individuals with PD, and one purely thalamocortical model. Spikes generated by these field models were then used to drive the network model. Compared to the network driven by the healthy model, the PD-driven network had lower firing rates, a shift in spectral power toward lower frequencies, and higher probability of bursting; each of these findings is consistent with empirical data on PD. In the healthy model, we found strong Granger causality between cortical layers in the beta and low gamma frequency bands, but this causality was largely absent in the PD model. In particular, the reduction in Granger causality from the main “input” layer of the cortex (layer 4) to the main “output” layer (layer 5) was pronounced. This may account for symptoms of PD that seem to reflect deficits in information flow, such as bradykinesia. In general, these results demonstrate that the brain's large-scale oscillatory environment, represented here by the field model, strongly influences the information processing that occurs within its subnetworks. Hence, it may be preferable to drive spiking network models with physiologically realistic inputs rather than pure white noise.
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Affiliation(s)
- Cliff C Kerr
- Department of Physiology and Pharmacology, State University of New York Downstate Medical Center Brooklyn, NY, USA ; School of Physics, University of Sydney NSW, Australia ; Brain Dynamics Centre, Westmead Millennium Institute Westmead, NSW, Australia
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