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Vosough S, Candrian G, Kasper J, Abdel Rehim H, Eich D, Müller A, Jäncke L. Facial Affect Recognition and Executive Function Abnormalities in ADHD Subjects: An ERP Study. Clin EEG Neurosci 2024:15500594241304492. [PMID: 39698976 DOI: 10.1177/15500594241304492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/20/2024]
Abstract
Attention-deficit/hyperactivity disorder (ADHD) affects approximately 12% of children worldwide. With a 50% chance of persistence into adulthood and associations with impairments in various domains, including social and emotional ones, early diagnosis is crucial. The exact neural substrates of ADHD are still unclear. This study aimed to reassess the behavioral and neural metrics of executive functions and neural substrates of facial affect recognition. A total of 117 ADHD patients and 183 healthy controls were evaluated by two Go/NoGo tasks: the classic visual continuous performance test and the emotional continuous performance test, which requires facial affect encoding. Group differences between ADHD subjects and healthy controls were assessed using analysis of covariance (ANCOVA), with age and sex included as covariates. Dependent variables comprised behavioral (number of omission and commission errors, reaction time, and reaction time variability) and neurophysiological measures (event-related potentials [ERPs]). As the main result, we identified significant differences between ADHD patients and healthy controls in all behavioral metrics, one neural marker of action inhibition (P3d) and the facial processing marker (N170). The differences were moderate-to-large when expressed as effect size measures in behavioral variables and small-to-moderate for neurophysiological variables. The small-to-moderate effect sizes obtained from the neurophysiological measures suggest that ERPs are insufficient as sole markers for effectively screening emotion and face processing abnormalities in ADHD.
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Affiliation(s)
- Saghar Vosough
- Division Neuropsychology, Department of Psychology, University of Zurich, Zurich, Switzerland
| | - Gian Candrian
- Brain and trauma foundation Grisons/Switzerland, Chur, Switzerland
| | - Johannes Kasper
- Praxisgemeinschaft für Psychiatrie und Psychotherapie, Lucerne, Switzerland
| | | | - Dominique Eich
- Department of Psychiatry, Psychotherapy, and Psychosomatics, University of Zurich, Zurich, Switzerland
| | - Andreas Müller
- Brain and trauma foundation Grisons/Switzerland, Chur, Switzerland
| | - Lutz Jäncke
- Division Neuropsychology, Department of Psychology, University of Zurich, Zurich, Switzerland
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Taspinar G, Ozkurt N. A review of ADHD detection studies with machine learning methods using rsfMRI data. NMR IN BIOMEDICINE 2024; 37:e5138. [PMID: 38472163 DOI: 10.1002/nbm.5138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 02/05/2024] [Accepted: 02/11/2024] [Indexed: 03/14/2024]
Abstract
Attention deficit hyperactivity disorder (ADHD) is a common mental health condition that significantly affects school-age children, causing difficulties with learning and daily functioning. Early identification is crucial, and reliable and objective diagnostic tools are necessary. However, current clinical evaluations of behavioral symptoms can be inconsistent and subjective. Functional magnetic resonance imaging (fMRI) is a non-invasive technique that has proven effective in detecting brain abnormalities in individuals with ADHD. Recent studies have shown promising outcomes in using resting state fMRI (rsfMRI)-based brain functional networks to diagnose various brain disorders, including ADHD. Several review papers have examined the detection of other diseases using fMRI data and machine learning or deep learning methods. However, no review paper has specifically addressed ADHD. Therefore, this study aims to contribute to the literature by reviewing the use of rsfMRI data and machine learning methods for detection of ADHD. The study provides general information about fMRI databases and detailed knowledge of the ADHD-200 database, which is commonly used for ADHD detection. It also emphasizes the importance of examining all stages of the process, including network and atlas selection, feature extraction, and feature selection, before the classification stage. The study compares the performance, advantages, and disadvantages of previous studies in detail. This comprehensive approach may be a useful starting point for new researchers in this area.
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Affiliation(s)
| | - Nalan Ozkurt
- Electric and Electronic Engineering, Yasar University Izmir, Izmir, Turkey
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Madububambachu U, Ukpebor A, Ihezue U. Machine Learning Techniques to Predict Mental Health Diagnoses: A Systematic Literature Review. Clin Pract Epidemiol Ment Health 2024; 20:e17450179315688. [PMID: 39355197 PMCID: PMC11443461 DOI: 10.2174/0117450179315688240607052117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 05/16/2024] [Accepted: 05/21/2024] [Indexed: 10/03/2024]
Abstract
Introduction This study aims to investigate the potential of machine learning in predicting mental health conditions among college students by analyzing existing literature on mental health diagnoses using various machine learning algorithms. Methods The research employed a systematic literature review methodology to investigate the application of deep learning techniques in predicting mental health diagnoses among students from 2011 to 2024. The search strategy involved key terms, such as "deep learning," "mental health," and related terms, conducted on reputable repositories like IEEE, Xplore, ScienceDirect, SpringerLink, PLOS, and Elsevier. Papers published between January, 2011, and May, 2024, specifically focusing on deep learning models for mental health diagnoses, were considered. The selection process adhered to PRISMA guidelines and resulted in 30 relevant studies. Results The study highlights Convolutional Neural Networks (CNN), Random Forest (RF), Support Vector Machine (SVM), Deep Neural Networks, and Extreme Learning Machine (ELM) as prominent models for predicting mental health conditions. Among these, CNN demonstrated exceptional accuracy compared to other models in diagnosing bipolar disorder. However, challenges persist, including the need for more extensive and diverse datasets, consideration of heterogeneity in mental health condition, and inclusion of longitudinal data to capture temporal dynamics. Conclusion This study offers valuable insights into the potential and challenges of machine learning in predicting mental health conditions among college students. While deep learning models like CNN show promise, addressing data limitations and incorporating temporal dynamics are crucial for further advancements.
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Affiliation(s)
- Ujunwa Madububambachu
- School of Computing Sciences and Computer Engineering, University of Southern Mississippi, Hattiesburg, Mississippi, United States of America
| | | | - Urenna Ihezue
- Department of Public Health, College of Nursing and Health Professions, University of Southern Mississippi, Hattiesburg Mississippi, United States of America
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Tian L, Zheng H, Zhang K, Qiu J, Song X, Li S, Zeng Z, Ran B, Deng X, Cai J. Structural or/and functional MRI-based machine learning techniques for attention-deficit/hyperactivity disorder diagnosis: A systematic review and meta-analysis. J Affect Disord 2024; 355:459-469. [PMID: 38580035 DOI: 10.1016/j.jad.2024.03.111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 03/21/2024] [Accepted: 03/23/2024] [Indexed: 04/07/2024]
Abstract
BACKGROUND The aim of this study was to investigate the diagnostic value of ML techniques based on sMRI or/and fMRI for ADHD. METHODS We conducted a comprehensive search (from database creation date to March 2024) for relevant English articles on sMRI or/and fMRI-based ML techniques for diagnosing ADHD. The pooled sensitivity, specificity, positive likelihood ratio (LR+), negative likelihood ratio (LR-), summary receiver operating characteristic (SROC) curve and area under the curve (AUC) were calculated to assess the diagnostic value of sMRI or/and fMRI-based ML techniques. The I2 test was used to assess heterogeneity and the source of heterogeneity was investigated by performing a meta-regression analysis. Publication bias was assessed using the Deeks funnel plot asymmetry test. RESULTS Forty-three studies were included in the systematic review, 27 of which were included in our meta-analysis. The pooled sensitivity and specificity of sMRI or/and fMRI-based ML techniques for the diagnosis of ADHD were 0.74 (95 % CI 0.65-0.81) and 0.75 (95 % CI 0.67-0.81), respectively. SROC curve showed that AUC was 0.81 (95 % CI 0.77-0.84). Based on these findings, the sMRI or/and fMRI-based ML techniques have relatively good diagnostic value for ADHD. LIMITATIONS Our meta-analysis specifically focused on ML techniques based on sMRI or/and fMRI studies. Since EEG-based ML techniques are also used for diagnosing ADHD, further systematic analyses are necessary to explore ML methods based on multimodal medical data. CONCLUSION sMRI or/and fMRI-based ML technique is a promising objective diagnostic method for ADHD.
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Affiliation(s)
- Lu Tian
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Chongqing 400014, China
| | - Helin Zheng
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Chongqing 400014, China
| | - Ke Zhang
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Chongqing 400014, China
| | - Jiawen Qiu
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Chongqing 400014, China
| | - Xuejuan Song
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Chongqing 400014, China
| | - Siwei Li
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Chongqing 400014, China
| | - Zhao Zeng
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Chongqing 400014, China
| | - Baosheng Ran
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Chongqing 400014, China
| | - Xin Deng
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Chongqing 400014, China
| | - Jinhua Cai
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Chongqing 400014, China.
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5
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Loo SK, Lenartowicz A, Norman LJ, Michelini G. Translating Decades of Neuroscience Research into Diagnostic and Treatment Biomarkers for ADHD. ADVANCES IN NEUROBIOLOGY 2024; 40:579-616. [PMID: 39562458 DOI: 10.1007/978-3-031-69491-2_20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2024]
Abstract
In this chapter, we review scientific findings that form the basis for neuroimaging and neurophysiological biomarkers for ADHD diagnosis and treatment. We then highlight the different challenges in translating mechanistic findings into biomarkers for ADHD diagnosis and treatment. Population heterogeneity is a primary barrier for identifying biomarkers of ADHD diagnosis, which requires shifts toward dimensional approaches that identify clinically useful subgroups or prospective biomarkers that can identify trajectories of illness, function, or treatment response. Methodological limitations, including emphasis on group level analyses of treatment effects in small sample sizes, are the primary barriers to biomarker discovery in ADHD treatment. Modifications to clinical trials, including shifting towards testing biomarkers of a priori prediction of functionally related brain targets, treatment response, and side effects, are suggested. Finally, future directions for biomarker work are discussed.
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Affiliation(s)
- Sandra K Loo
- Semel Institute for Neuroscience and Human Behavior, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
| | - Agatha Lenartowicz
- Semel Institute for Neuroscience and Human Behavior, David Geffen School of Medicine, University of California, Los Angeles, CA, USA
| | - Luke J Norman
- National Institute of Mental Health, Bethesda, MD, USA
| | - Giorgia Michelini
- Semel Institute for Neuroscience and Human Behavior, David Geffen School of Medicine, University of California, Los Angeles, CA, USA
- School of Biological & Behavioural Sciences, Queen Mary University of London, London, UK
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6
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Wang Q, Zhao C, Qiu J, Lu W. Two neurosubtypes of ADHD different from the clinical phenotypes. Psychiatry Res 2023; 328:115453. [PMID: 37660582 DOI: 10.1016/j.psychres.2023.115453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 08/24/2023] [Accepted: 08/27/2023] [Indexed: 09/05/2023]
Abstract
Clinical and etiological variability of attention deficit hyperactivity disorder (ADHD) presents an obstacle to understand the disorder. The aim of this study was to disentangle the heterogeneity of ADHD using neuroimaging and a semi-supervised machine learning algorithm. We collected brain structural and functional magnetic resonance imaging (MRI) data and clinical profiles of 183 children with ADHD and 396 neurotypical controls from 7 independent sites. We also used an external validation set with 750 subjects. We adopted a semi-supervised clustering method to subtype ADHD by regional volumetric measures of gray matter, white matter, and fractional amplitude of low frequency fluctuation (fALFF). In addition, split sample test, leave-one-site-out test and external validation were applied to evaluate the reproducibility and stability of ADHD subtypes. Two stable and reproducible neurosubtypes of ADHD were disclosed, which were proved by the split-sample test and leave-one-site-out validation. The structural and functional patterns of ADHD subtypes were also stable in the external validation set. The current two neurosubtypes differed in clinical manifestations and volumetric gray matter, white matter volume and fALFF patterns. The current neurosubtypes of ADHD which were different from clinical phenotypes could facilitate understanding the underlying neuropathological and neurobiological mechanism of the disorder.
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Affiliation(s)
- Qi Wang
- Department of Radiology, the Second Affiliated Hospital of Shandong First Medical University, Taian, 271000, China
| | - Chuanhua Zhao
- Department of Radiology, Shandong First Medical University & Shandong Academy of Medical Sciences, Taian, 271000, China
| | - Jianfeng Qiu
- Department of Radiology, Shandong First Medical University & Shandong Academy of Medical Sciences, Taian, 271000, China
| | - Weizhao Lu
- Department of Radiology, the Second Affiliated Hospital of Shandong First Medical University, Taian, 271000, China.
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7
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Chen Z, Hu B, Liu X, Becker B, Eickhoff SB, Miao K, Gu X, Tang Y, Dai X, Li C, Leonov A, Xiao Z, Feng Z, Chen J, Chuan-Peng H. Sampling inequalities affect generalization of neuroimaging-based diagnostic classifiers in psychiatry. BMC Med 2023; 21:241. [PMID: 37400814 DOI: 10.1186/s12916-023-02941-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Accepted: 06/13/2023] [Indexed: 07/05/2023] Open
Abstract
BACKGROUND The development of machine learning models for aiding in the diagnosis of mental disorder is recognized as a significant breakthrough in the field of psychiatry. However, clinical practice of such models remains a challenge, with poor generalizability being a major limitation. METHODS Here, we conducted a pre-registered meta-research assessment on neuroimaging-based models in the psychiatric literature, quantitatively examining global and regional sampling issues over recent decades, from a view that has been relatively underexplored. A total of 476 studies (n = 118,137) were included in the current assessment. Based on these findings, we built a comprehensive 5-star rating system to quantitatively evaluate the quality of existing machine learning models for psychiatric diagnoses. RESULTS A global sampling inequality in these models was revealed quantitatively (sampling Gini coefficient (G) = 0.81, p < .01), varying across different countries (regions) (e.g., China, G = 0.47; the USA, G = 0.58; Germany, G = 0.78; the UK, G = 0.87). Furthermore, the severity of this sampling inequality was significantly predicted by national economic levels (β = - 2.75, p < .001, R2adj = 0.40; r = - .84, 95% CI: - .41 to - .97), and was plausibly predictable for model performance, with higher sampling inequality for reporting higher classification accuracy. Further analyses showed that lack of independent testing (84.24% of models, 95% CI: 81.0-87.5%), improper cross-validation (51.68% of models, 95% CI: 47.2-56.2%), and poor technical transparency (87.8% of models, 95% CI: 84.9-90.8%)/availability (80.88% of models, 95% CI: 77.3-84.4%) are prevailing in current diagnostic classifiers despite improvements over time. Relating to these observations, model performances were found decreased in studies with independent cross-country sampling validations (all p < .001, BF10 > 15). In light of this, we proposed a purpose-built quantitative assessment checklist, which demonstrated that the overall ratings of these models increased by publication year but were negatively associated with model performance. CONCLUSIONS Together, improving sampling economic equality and hence the quality of machine learning models may be a crucial facet to plausibly translating neuroimaging-based diagnostic classifiers into clinical practice.
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Affiliation(s)
- Zhiyi Chen
- Experimental Research Center for Medical and Psychological Science (ERC-MPS), School of Psychology, Third Military Medical University, Chongqing, China.
- Faculty of Psychology, Southwest University, Chongqing, China.
| | - Bowen Hu
- Faculty of Psychology, Southwest University, Chongqing, China
| | - Xuerong Liu
- Experimental Research Center for Medical and Psychological Science (ERC-MPS), School of Psychology, Third Military Medical University, Chongqing, China
| | - Benjamin Becker
- The Center of Psychosomatic Medicine, Sichuan Provincial Center for Mental Health, Sichuan Provincial People's Hospital, Chengdu, China
- The Clinical Hospital of Chengdu Brain Science Institute, MOE Key Laboratory for Neuroinformation, University of Electronic Science and Technology of China, Chengdu, China
| | - Simon B Eickhoff
- Institute of Systems Neuroscience, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - Kuan Miao
- Experimental Research Center for Medical and Psychological Science (ERC-MPS), School of Psychology, Third Military Medical University, Chongqing, China
| | - Xingmei Gu
- Experimental Research Center for Medical and Psychological Science (ERC-MPS), School of Psychology, Third Military Medical University, Chongqing, China
| | - Yancheng Tang
- School of Business and Management, Shanghai International Studies University, Shanghai, China
| | - Xin Dai
- Faculty of Psychology, Southwest University, Chongqing, China
| | - Chao Li
- Department of Radiology, The Third Affiliated Hospital, Sun Yat-Sen University, Guangdong, China
| | - Artemiy Leonov
- School of Psychology, Clark University, Worcester, MA, USA
| | - Zhibing Xiao
- State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing, China
| | - Zhengzhi Feng
- Experimental Research Center for Medical and Psychological Science (ERC-MPS), School of Psychology, Third Military Medical University, Chongqing, China
| | - Ji Chen
- Department of Psychology and Behavioral Sciences, Zhejiang University, Hangzhou, China.
- Department of Psychiatry, The Fourth Affiliated Hospital, Zhejiang University School of Medicine, Yiwu, Zhejiang, China.
| | - Hu Chuan-Peng
- School of Psychology, Nanjing Normal University, Nanjing, China
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8
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Cao M, Martin E, Li X. Machine learning in attention-deficit/hyperactivity disorder: new approaches toward understanding the neural mechanisms. Transl Psychiatry 2023; 13:236. [PMID: 37391419 DOI: 10.1038/s41398-023-02536-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 06/19/2023] [Accepted: 06/21/2023] [Indexed: 07/02/2023] Open
Abstract
Attention-deficit/hyperactivity disorder (ADHD) is a highly prevalent and heterogeneous neurodevelopmental disorder in children and has a high chance of persisting in adulthood. The development of individualized, efficient, and reliable treatment strategies is limited by the lack of understanding of the underlying neural mechanisms. Diverging and inconsistent findings from existing studies suggest that ADHD may be simultaneously associated with multivariate factors across cognitive, genetic, and biological domains. Machine learning algorithms are more capable of detecting complex interactions between multiple variables than conventional statistical methods. Here we present a narrative review of the existing machine learning studies that have contributed to understanding mechanisms underlying ADHD with a focus on behavioral and neurocognitive problems, neurobiological measures including genetic data, structural magnetic resonance imaging (MRI), task-based and resting-state functional MRI (fMRI), electroencephalogram, and functional near-infrared spectroscopy, and prevention and treatment strategies. Implications of machine learning models in ADHD research are discussed. Although increasing evidence suggests that machine learning has potential in studying ADHD, extra precautions are still required when designing machine learning strategies considering the limitations of interpretability and generalization.
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Affiliation(s)
- Meng Cao
- Department of Biomedical Engineering, New Jersey Institute of Technology, Newark, NJ, USA
| | | | - Xiaobo Li
- Department of Biomedical Engineering, New Jersey Institute of Technology, Newark, NJ, USA.
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9
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Garcia-Argibay M, Zhang-James Y, Cortese S, Lichtenstein P, Larsson H, Faraone SV. Predicting childhood and adolescent attention-deficit/hyperactivity disorder onset: a nationwide deep learning approach. Mol Psychiatry 2023; 28:1232-1239. [PMID: 36536075 PMCID: PMC10005952 DOI: 10.1038/s41380-022-01918-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Revised: 12/05/2022] [Accepted: 12/09/2022] [Indexed: 12/23/2022]
Abstract
Attention-deficit/hyperactivity disorder (ADHD) is a heterogeneous disorder with a high degree of psychiatric and physical comorbidity, which complicates its diagnosis in childhood and adolescence. We analyzed registry data from 238,696 persons born and living in Sweden between 1995 and 1999. Several machine learning techniques were used to assess the ability of registry data to inform the diagnosis of ADHD in childhood and adolescence: logistic regression, random Forest, gradient boosting, XGBoost, penalized logistic regression, deep neural network (DNN), and ensemble models. The best fitting model was the DNN, achieving an area under the receiver operating characteristic curve of 0.75, 95% CI (0.74-0.76) and balanced accuracy of 0.69. At the 0.45 probability threshold, sensitivity was 71.66% and specificity was 65.0%. There was an overall agreement in the feature importance among all models (τ > .5). The top 5 features contributing to classification were having a parent with criminal convictions, male sex, having a relative with ADHD, number of academic subjects failed, and speech/learning disabilities. A DNN model predicting childhood and adolescent ADHD trained exclusively on Swedish register data achieved good discrimination. If replicated and validated in an external sample, and proven to be cost-effective, this model could be used to alert clinicians to individuals who ought to be screened for ADHD and to aid clinicians' decision-making with the goal of decreasing misdiagnoses. Further research is needed to validate results in different populations and to incorporate new predictors.
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Affiliation(s)
- Miguel Garcia-Argibay
- School of Medical Sciences, Faculty of Medicine and Health, Örebro University, Örebro, Sweden.
- Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden.
| | - Yanli Zhang-James
- Departments of Psychiatry and of Neuroscience and Physiology, SUNY Upstate Medical University, Syracuse, NY, USA
| | - Samuele Cortese
- School of Psychology, University of Southampton, Southampton, UK
- Clinical and Experimental Sciences (CNS and Psychiatry), Faculty of Medicine, University of Southampton, Southampton, UK
- Solent NHS Trust, Southampton, UK
- Hassenfeld Children's Hospital at NYU Langone, New York University Child Study Center, New York City, New York, NY, USA
- Division of Psychiatry and Applied Psychology, School of Medicine, University of Nottingham, Nottingham, UK
| | - Paul Lichtenstein
- Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
| | - Henrik Larsson
- School of Medical Sciences, Faculty of Medicine and Health, Örebro University, Örebro, Sweden
- Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
| | - Stephen V Faraone
- Departments of Psychiatry and of Neuroscience and Physiology, SUNY Upstate Medical University, Syracuse, NY, USA
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10
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Chen Z, Liu X, Yang Q, Wang YJ, Miao K, Gong Z, Yu Y, Leonov A, Liu C, Feng Z, Chuan-Peng H. Evaluation of Risk of Bias in Neuroimaging-Based Artificial Intelligence Models for Psychiatric Diagnosis: A Systematic Review. JAMA Netw Open 2023; 6:e231671. [PMID: 36877519 PMCID: PMC9989906 DOI: 10.1001/jamanetworkopen.2023.1671] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 03/07/2023] Open
Abstract
IMPORTANCE Neuroimaging-based artificial intelligence (AI) diagnostic models have proliferated in psychiatry. However, their clinical applicability and reporting quality (ie, feasibility) for clinical practice have not been systematically evaluated. OBJECTIVE To systematically assess the risk of bias (ROB) and reporting quality of neuroimaging-based AI models for psychiatric diagnosis. EVIDENCE REVIEW PubMed was searched for peer-reviewed, full-length articles published between January 1, 1990, and March 16, 2022. Studies aimed at developing or validating neuroimaging-based AI models for clinical diagnosis of psychiatric disorders were included. Reference lists were further searched for suitable original studies. Data extraction followed the CHARMS (Checklist for Critical Appraisal and Data Extraction for Systematic Reviews of Prediction Modeling Studies) and PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-analyses) guidelines. A closed-loop cross-sequential design was used for quality control. The PROBAST (Prediction Model Risk of Bias Assessment Tool) and modified CLEAR (Checklist for Evaluation of Image-Based Artificial Intelligence Reports) benchmarks were used to systematically evaluate ROB and reporting quality. FINDINGS A total of 517 studies presenting 555 AI models were included and evaluated. Of these models, 461 (83.1%; 95% CI, 80.0%-86.2%) were rated as having a high overall ROB based on the PROBAST. The ROB was particular high in the analysis domain, including inadequate sample size (398 of 555 models [71.7%; 95% CI, 68.0%-75.6%]), poor model performance examination (with 100% of models lacking calibration examination), and lack of handling data complexity (550 of 555 models [99.1%; 95% CI, 98.3%-99.9%]). None of the AI models was perceived to be applicable to clinical practices. Overall reporting completeness (ie, number of reported items/number of total items) for the AI models was 61.2% (95% CI, 60.6%-61.8%), and the completeness was poorest for the technical assessment domain with 39.9% (95% CI, 38.8%-41.1%). CONCLUSIONS AND RELEVANCE This systematic review found that the clinical applicability and feasibility of neuroimaging-based AI models for psychiatric diagnosis were challenged by a high ROB and poor reporting quality. Particularly in the analysis domain, ROB in AI diagnostic models should be addressed before clinical application.
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Affiliation(s)
- Zhiyi Chen
- School of Psychology, Third Military Medical University, Chongqing, China
- Experimental Research Center for Medical and Psychological Science, Third Military Medical University, Chongqing, China
| | - Xuerong Liu
- School of Psychology, Third Military Medical University, Chongqing, China
- Experimental Research Center for Medical and Psychological Science, Third Military Medical University, Chongqing, China
| | - Qingwu Yang
- Department of Neurology, Daping Hospital, Third Military Medical University, Chongqing, China
| | - Yan-Jiang Wang
- Department of Neurology, Daping Hospital, Third Military Medical University, Chongqing, China
| | - Kuan Miao
- School of Psychology, Third Military Medical University, Chongqing, China
- Experimental Research Center for Medical and Psychological Science, Third Military Medical University, Chongqing, China
| | - Zheng Gong
- School of Psychology, Third Military Medical University, Chongqing, China
- Experimental Research Center for Medical and Psychological Science, Third Military Medical University, Chongqing, China
| | - Yang Yu
- School of Psychology, Third Military Medical University, Chongqing, China
| | - Artemiy Leonov
- Department of Psychology, Clark University, Worcester, Massachusetts
| | - Chunlei Liu
- School of Psychology, Qufu Normal University, Qufu, China
| | - Zhengzhi Feng
- School of Psychology, Third Military Medical University, Chongqing, China
- Experimental Research Center for Medical and Psychological Science, Third Military Medical University, Chongqing, China
| | - Hu Chuan-Peng
- School of Psychology, Nanjing Normal University, Nanjing, China
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11
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Zhang-James Y, Razavi AS, Hoogman M, Franke B, Faraone SV. Machine Learning and MRI-based Diagnostic Models for ADHD: Are We There Yet? J Atten Disord 2023; 27:335-353. [PMID: 36651494 DOI: 10.1177/10870547221146256] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
OBJECTIVE Machine learning (ML) has been applied to develop magnetic resonance imaging (MRI)-based diagnostic classifiers for attention-deficit/hyperactivity disorder (ADHD). This systematic review examines this literature to clarify its clinical significance and to assess the implications of the various analytic methods applied. METHODS A comprehensive literature search on MRI-based diagnostic classifiers for ADHD was performed and data regarding the utilized models and samples were gathered. RESULTS We found that, although most studies reported the classification accuracies, they varied in choice of MRI modalities, ML models, cross-validation and testing methods, and sample sizes. We found that the accuracies of cross-validation methods inflated the performance estimation compared with those of a held-out test, compromising the model generalizability. Test accuracies have increased with publication year but were not associated with training sample sizes. Improved test accuracy over time was likely due to the use of better ML methods along with strategies to deal with data imbalances. CONCLUSION Ultimately, large multi-modal imaging datasets, and potentially the combination with other types of data, like cognitive data and/or genetics, will be essential to achieve the goal of developing clinically useful imaging classification tools for ADHD in the future.
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Affiliation(s)
| | | | - Martine Hoogman
- Radboud University Medical Center, Nijmegen, The Netherlands
- Donders Institute for Brain, Cognition and Behavior, Nijmegen, The Netherlands
| | - Barbara Franke
- Radboud University Medical Center, Nijmegen, The Netherlands
- Donders Institute for Brain, Cognition and Behavior, Nijmegen, The Netherlands
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12
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A Review of Machine Learning and Deep Learning Approaches on Mental Health Diagnosis. Healthcare (Basel) 2023; 11:healthcare11030285. [PMID: 36766860 PMCID: PMC9914523 DOI: 10.3390/healthcare11030285] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 01/09/2023] [Accepted: 01/11/2023] [Indexed: 01/19/2023] Open
Abstract
Combating mental illnesses such as depression and anxiety has become a global concern. As a result of the necessity for finding effective ways to battle these problems, machine learning approaches have been included in healthcare systems for the diagnosis and probable prediction of the treatment outcomes of mental health conditions. With the growing interest in machine and deep learning methods, analysis of existing work to guide future research directions is necessary. In this study, 33 articles on the diagnosis of schizophrenia, depression, anxiety, bipolar disorder, post-traumatic stress disorder (PTSD), anorexia nervosa, and attention deficit hyperactivity disorder (ADHD) were retrieved from various search databases using the preferred reporting items for systematic reviews and meta-analysis (PRISMA) review methodology. These publications were chosen based on their use of machine learning and deep learning technologies, individually assessed, and their recommended methodologies were then classified into the various disorders included in this study. In addition, the difficulties encountered by the researchers are discussed, and a list of some public datasets is provided.
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13
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Yu H, Zhang C, Cai Y, Wu N, Jia X, Wu J, Shi F, Hua R, Yang Q. Morphological brain alterations in dialysis- and non-dialysis-dependent patients with chronic kidney disease. Metab Brain Dis 2023; 38:1311-1321. [PMID: 36642760 DOI: 10.1007/s11011-022-01150-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 12/14/2022] [Indexed: 01/17/2023]
Abstract
To 1) investigate the morphological brain-tissue changes in patients with dialysis- and non-dialysis-dependent chronic kidney disease (CKD); 2) analyze the effects of CKD on whole-brain cortical thickness, cortical volume, surface area, and surface curvature; and 3) analyze the correlation of these changes with clinical and biochemical indices. This study included normal controls (NCs, n = 34) and patients with CKD who were divided into dialysis (dialysis-dependent chronic kidney disease [DD-CKD], n = 26) and non-dialysis (non-dialysis patients who underwent cranial magnetic resonance imaging scans [NDD-CKD], n = 26) groups. Cortical thickness, volume, surface area, and surface curvature in each group were calculated using FreeSurfer software. Brain morphological indicators with statistical differences were correlated with clinical and biochemical indicators. Patients with CKD exhibited a significant and widespread decrease in cortical thickness and volume compared with NCs. Among the brain regions associated with higher neural activity, patients with CKD exhibited more significant morphological changes in the paracentral gyrus, transverse temporal gyrus, and lateral occipital cortex than in other brain regions. Cortical thickness and volume in patients with CKD correlated with blood pressure, lipid, hemoglobin, creatinine, and urea nitrogen levels. The extent of brain atrophy was further increased in the DD-CKD group compared with that in the NDD-CKD group. Patients with CKD potentially exhibit a certain degree of structural brain-tissue imaging changes, with morphological changes more pronounced in patients with DD-CKD, suggesting that blood urea nitrogen and dialysis may be influential factors in brain morphological changes in patients with CKD.
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Affiliation(s)
- Huan Yu
- Department of Radiology, Xuanwu Hospital, Capital Medical Universit, Beijing, China
- Department of Radiology, Liangxiang Hospital, Fangshan District, Beijing, China
| | - Chaoyang Zhang
- Department of Nephrology, General Hospital of the Chinese People's Liberation Army, Beijing, China
| | - Yan Cai
- Department of Nephrology, The Affiliated Hospital of Yangzhou University, Yangzhou, Jiangsu, China
| | - Ning Wu
- Yanjing Medical College, Capital Medical University, Beijing, China
| | - Xiuqin Jia
- Department of Radiology, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Jiaojiao Wu
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Feng Shi
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Rui Hua
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Qi Yang
- Department of Radiology, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China.
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14
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Khadem-Reza ZK, Zare H. Automatic detection of autism spectrum disorder (ASD) in children using structural magnetic resonance imaging with machine vision system. MIDDLE EAST CURRENT PSYCHIATRY 2022. [DOI: 10.1186/s43045-022-00220-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Abstract
Background
Autism spectrum disorder (ASD) is a group of developmental disorders of the nervous system whose main manifestations are defects in social interactions, communication, repetitive behaviors, and limited interests. Over the years, the use of magnetic resonance imaging (MRI) to help identify patterns that are common in people with autism has increased for classification purposes. This study propose a method for classifying ASD patients versus controls using structural MRI information. In order to increase the accuracy of this method, the volume and surface features of the structural images are used simultaneously.
Results
The accuracy of diagnosis respectively was 86.29%, 71.15%, 86.53%, and 88.46% with SVM, RF, KNN, and ANN classifiers. The highest accuracy of diagnosis was obtained using ANN.
Conclusions
Since clinical evaluations for the diagnosis of autism are extremely time-consuming and depend on the expertise of a specialist, the importance of intelligent diagnosis of this disorder becomes clear. The aim of this study was to design an intelligent system to diagnose autism spectrum disorder.
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15
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Öztekin I, Garic D, Bayat M, Hernandez ML, Finlayson MA, Graziano PA, Dick AS. Structural and diffusion-weighted brain imaging predictors of attention-deficit/hyperactivity disorder and its symptomology in very young (4- to 7-year-old) children. Eur J Neurosci 2022; 56:6239-6257. [PMID: 36215144 PMCID: PMC10165616 DOI: 10.1111/ejn.15842] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 09/15/2022] [Accepted: 09/21/2022] [Indexed: 12/29/2022]
Abstract
The current study aimed to identify the key neurobiology of attention-deficit/hyperactivity disorder (ADHD), as it relates to ADHD diagnostic category and symptoms of hyperactive/impulsive behaviour and inattention. To do so, we adapted a predictive modelling approach to identify the key structural and diffusion-weighted brain imaging measures and their relative standing with respect to teacher ratings of executive function (EF) (measured by the Metacognition Index of the Behavior Rating Inventory of Executive Function [BRIEF]) and negativity and emotion regulation (ER) (measured by the Emotion Regulation Checklist [ERC]), in a critical young age range (ages 4 to 7, mean age 5.52 years, 82.2% Hispanic/Latino), where initial contact with educators and clinicians typically take place. Teacher ratings of EF and ER were predictive of both ADHD diagnostic category and symptoms of hyperactive/impulsive behaviour and inattention. Among the neural measures evaluated, the current study identified the critical importance of the largely understudied diffusion-weighted imaging measures for the underlying neurobiology of ADHD and its associated symptomology. Specifically, our analyses implicated the inferior frontal gyrus as a critical predictor of ADHD diagnostic category and its associated symptomology, above and beyond teacher ratings of EF and ER. Collectively, the current set of findings have implications for theories of ADHD, the relative utility of neurobiological measures with respect to teacher ratings of EF and ER, and the developmental trajectory of its underlying neurobiology.
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Affiliation(s)
- Ilke Öztekin
- Center for Children and Families and Department of Psychology, Florida International University, Miami, Florida, USA.,Exponent, Inc., Philadelphia, Pennsylvania, USA
| | - Dea Garic
- Carolina Institute for Developmental Disabilities, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
| | - Mohammadreza Bayat
- Center for Children and Families and Department of Psychology, Florida International University, Miami, Florida, USA
| | - Melissa L Hernandez
- Center for Children and Families and Department of Psychology, Florida International University, Miami, Florida, USA
| | - Mark A Finlayson
- School of Computing and Information Sciences, Florida International University, Miami, Florida, USA
| | - Paulo A Graziano
- Center for Children and Families and Department of Psychology, Florida International University, Miami, Florida, USA
| | - Anthony Steven Dick
- Center for Children and Families and Department of Psychology, Florida International University, Miami, Florida, USA
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16
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Wang J, Lu S, Wang SH, Zhang YD. A review on extreme learning machine. MULTIMEDIA TOOLS AND APPLICATIONS 2022; 81:41611-41660. [DOI: 10.1007/s11042-021-11007-7] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2020] [Revised: 02/26/2021] [Accepted: 05/05/2021] [Indexed: 08/30/2023]
Abstract
AbstractExtreme learning machine (ELM) is a training algorithm for single hidden layer feedforward neural network (SLFN), which converges much faster than traditional methods and yields promising performance. In this paper, we hope to present a comprehensive review on ELM. Firstly, we will focus on the theoretical analysis including universal approximation theory and generalization. Then, the various improvements are listed, which help ELM works better in terms of stability, efficiency, and accuracy. Because of its outstanding performance, ELM has been successfully applied in many real-time learning tasks for classification, clustering, and regression. Besides, we report the applications of ELM in medical imaging: MRI, CT, and mammogram. The controversies of ELM were also discussed in this paper. We aim to report these advances and find some future perspectives.
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17
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Yin W, Li T, Mucha PJ, Cohen JR, Zhu H, Zhu Z, Lin W. Altered neural flexibility in children with attention-deficit/hyperactivity disorder. Mol Psychiatry 2022; 27:4673-4679. [PMID: 35869272 PMCID: PMC9734048 DOI: 10.1038/s41380-022-01706-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 07/05/2022] [Accepted: 07/07/2022] [Indexed: 12/14/2022]
Abstract
Attention-deficit/hyperactivity disorder (ADHD) is one of the most common neurodevelopmental disorders of childhood, and is often characterized by altered executive functioning. Executive function has been found to be supported by flexibility in dynamic brain reconfiguration. Thus, we applied multilayer community detection to resting-state fMRI data in 180 children with ADHD and 180 typically developing children (TDC) to identify alterations in dynamic brain reconfiguration in children with ADHD. We specifically evaluated MR derived neural flexibility, which is thought to underlie cognitive flexibility, or the ability to selectively switch between mental processes. Significantly decreased neural flexibility was observed in the ADHD group at both the whole brain (raw p = 0.0005) and sub-network levels (p < 0.05, FDR corrected), particularly for the default mode network, attention-related networks, executive function-related networks, and primary networks. Furthermore, the subjects with ADHD who received medication exhibited significantly increased neural flexibility (p = 0.025, FDR corrected) when compared to subjects with ADHD who were medication naïve, and their neural flexibility was not statistically different from the TDC group (p = 0.74, FDR corrected). Finally, regional neural flexibility was capable of differentiating ADHD from TDC (Accuracy: 77% for tenfold cross-validation, 74.46% for independent test) and of predicting ADHD severity using clinical measures of symptom severity (R2: 0.2794 for tenfold cross-validation, 0.156 for independent test). In conclusion, the present study found that neural flexibility is altered in children with ADHD and demonstrated the potential clinical utility of neural flexibility to identify children with ADHD, as well as to monitor treatment responses and disease severity.
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Affiliation(s)
- Weiyan Yin
- Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Tengfei Li
- Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
- Department of Radiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Peter J Mucha
- Department of Mathematics, Dartmouth College, Hanover, NH, USA
- Department of Mathematics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Jessica R Cohen
- Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
- Department of Psychology and Neuroscience, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
- Carolina Institute for Developmental Disabilities, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Hongtu Zhu
- Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
- Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Ziliang Zhu
- Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Weili Lin
- Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
- Department of Radiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
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18
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Classification of Alzheimer’s Disease Based on Core-Large Scale Brain Network Using Multilayer Extreme Learning Machine. MATHEMATICS 2022. [DOI: 10.3390/math10121967] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Various studies suggest that the network deficit in default network mode (DMN) is prevalent in Alzheimer’s disease (AD) and mild cognitive impairment (MCI). Besides DMN, some studies reveal that network alteration occurs in salience network motor networks and large scale network. In this study we performed classification of AD and MCI from healthy control considering the network alterations in large scale network and DMN. Thus, we constructed the brain network from functional magnetic resonance (fMR) images. Pearson’s correlation-based functional connectivity was used to construct the brain network. Graph features of the brain network were converted to feature vectors using Node2vec graph-embedding technique. Two classifiers, single layered extreme learning and multilayered extreme learning machine, were used for the classification together with feature selection approaches. We performed the classification test on the brain network of different sizes including the large scale brain network, the whole brain network and the combined brain network. Experimental results showed that the least absolute shrinkage and selection operator (LASSO) feature selection method generates better classification accuracy on large network size, and that feature selection with adaptive structure learning (FSAL) feature selection technique generates better classification accuracy on small network size.
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19
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Backhausen LL, Herting MM, Tamnes CK, Vetter NC. Best Practices in Structural Neuroimaging of Neurodevelopmental Disorders. Neuropsychol Rev 2022; 32:400-418. [PMID: 33893904 PMCID: PMC9090677 DOI: 10.1007/s11065-021-09496-2] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Accepted: 03/02/2021] [Indexed: 11/25/2022]
Abstract
Structural magnetic resonance imaging (sMRI) offers immense potential for increasing our understanding of how anatomical brain development relates to clinical symptoms and functioning in neurodevelopmental disorders. Clinical developmental sMRI may help identify neurobiological risk factors or markers that may ultimately assist in diagnosis and treatment. However, researchers and clinicians aiming to conduct sMRI studies of neurodevelopmental disorders face several methodological challenges. This review offers hands-on guidelines for clinical developmental sMRI. First, we present brain morphometry metrics and review evidence on typical developmental trajectories throughout adolescence, together with atypical trajectories in selected neurodevelopmental disorders. Next, we discuss challenges and good scientific practices in study design, image acquisition and analysis, and recent options to implement quality control. Finally, we discuss choices related to statistical analysis and interpretation of results. We call for greater completeness and transparency in the reporting of methods to advance understanding of structural brain alterations in neurodevelopmental disorders.
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Affiliation(s)
- Lea L. Backhausen
- Department of Child and Adolescent Psychiatry, Faculty of Medicine of the Technische Universitaet Dresden, Dresden, Germany
| | - Megan M. Herting
- Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA USA
| | - Christian K. Tamnes
- PROMENTA Research Center, Department of Psychology, University of Oslo, Oslo, Norway
- NORMENT, Institute of Clinical Medicine, University of Oslo, Oslo, Norway
- Department of Psychiatric Research, Diakonhjemmet Hospital, Oslo, Norway
| | - Nora C. Vetter
- Department of Child and Adolescent Psychiatry, Faculty of Medicine of the Technische Universitaet Dresden, Dresden, Germany
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20
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Cibrian FL, Monteiro E, Schuck SEB, Nelson M, Hayes GR, Lakes KD. Interdisciplinary Tensions When Developing Digital Interventions Supporting Individuals With ADHD. Front Digit Health 2022; 4:876039. [PMID: 35633736 PMCID: PMC9133410 DOI: 10.3389/fdgth.2022.876039] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Accepted: 03/28/2022] [Indexed: 11/17/2022] Open
Affiliation(s)
- Franceli L. Cibrian
- Fowler School of Engineering, Chapman University, Orange, CA, United States
- *Correspondence: Franceli L. Cibrian
| | - Elissa Monteiro
- Graduate School of Education, University of California, Riverside, Riverside, CA, United States
| | - Sabrina E. B. Schuck
- Pediatrics Department, University of California, Irvine, Irvine, CA, United States
| | - Michele Nelson
- Department of Psychiatry and Neuroscience, University of California, Riverside, Riverside, CA, United States
| | - Gillian R. Hayes
- Pediatrics Department, University of California, Irvine, Irvine, CA, United States
- Informatics Department, University of California, Irvine, Irvine, CA, United States
| | - Kimberley D. Lakes
- Department of Psychiatry and Neuroscience, University of California, Riverside, Riverside, CA, United States
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21
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Zha R, Li P, Liu Y, Alarefi A, Zhang X, Li J. The orbitofrontal cortex represents advantageous choice in the Iowa gambling task. Hum Brain Mapp 2022; 43:3840-3856. [PMID: 35476367 PMCID: PMC9294296 DOI: 10.1002/hbm.25887] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 02/19/2022] [Accepted: 03/18/2022] [Indexed: 01/26/2023] Open
Abstract
A good‐based model, the central neurobiological model of economic decision‐making, proposes that the orbitofrontal cortex (OFC) represents binary choice outcome, that is, the chosen good. A good is defined by a group of determinants characterizing the conditions in which the commodity is offered, including commodity type, cost, risk, time delay, and ambiguity. Previous studies have found that the OFC represents the binary choice outcome in decision‐making tasks involving commodity type, cost, risk, and delay. Real‐life decisions are often complex and involve uncertainty, rewards, and penalties; however, whether the OFC represents binary choice outcomes in a complex decision‐making situation, for example, Iowa gambling task (IGT), remains unclear. Here, we propose that the OFC represents binary choice outcome, that is, advantageous choice versus disadvantageous choice, in the IGT. We propose two hypotheses: first, the activity pattern in the human OFC represents an advantageous choice; and second, choice induces an OFC‐related functional network. Using functional magnetic resonance imaging and advanced machine‐learning tools, we found that the OFC represented an advantageous choice in the IGT. The OFC representation of advantageous choice was related to decision‐making performance. Choice modulated the functional connectivity between the OFC and the superior medial gyrus. In conclusion, the OFC represents an advantageous choice during the IGT. In the framework of a good‐based model, the results extend the role of the OFC to complex decision‐making situation when making a binary choice.
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Affiliation(s)
- Rujing Zha
- Department of Radiology, the First Affiliated Hospital of USTC, Department of Psychology, School of Humanities & Social Science, Division of Life Science and Medicine, University of Science & Technology of China, Hefei, Anhui, China
| | - Peng Li
- Department of Automation, School of Information Science and Technology, University of Science and Technology of China, Hefei, Anhui, China
| | - Ying Liu
- Department of Radiology, the First Affiliated Hospital of USTC, Department of Psychology, School of Humanities & Social Science, Division of Life Science and Medicine, University of Science & Technology of China, Hefei, Anhui, China
| | - Abdulqawi Alarefi
- Department of Radiology, the First Affiliated Hospital of USTC, Department of Psychology, School of Humanities & Social Science, Division of Life Science and Medicine, University of Science & Technology of China, Hefei, Anhui, China
| | - Xiaochu Zhang
- Department of Radiology, the First Affiliated Hospital of USTC, Department of Psychology, School of Humanities & Social Science, Division of Life Science and Medicine, University of Science & Technology of China, Hefei, Anhui, China.,Application Technology Center of Physical Therapy to Brain Disorders, Institute of Advanced Technology, University of Science & Technology of China, Hefei, Anhui, China.,Hefei Medical Research Center on Alcohol Addiction, Affiliated Psychological Hospital of Anhui Medical University, Hefei Fourth People's Hospital, Anhui Mental Health Center, Hefei, Anhui, China.,Biomedical Sciences and Health Laboratory of Anhui Province, University of Science & Technology of China, Hefei, Anhui, China
| | - Jun Li
- Department of Automation, University of Science and Technology of China, Hefei, China
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22
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Loh HW, Ooi CP, Barua PD, Palmer EE, Molinari F, Acharya UR. Automated detection of ADHD: Current trends and future perspective. Comput Biol Med 2022; 146:105525. [DOI: 10.1016/j.compbiomed.2022.105525] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 03/31/2022] [Accepted: 04/04/2022] [Indexed: 12/25/2022]
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23
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Friedrich P, Patil KR, Mochalski LN, Li X, Camilleri JA, Kröll JP, Wiersch L, Eickhoff SB, Weis S. Is it left or is it right? A classification approach for investigating hemispheric differences in low and high dimensionality. Brain Struct Funct 2022; 227:425-440. [PMID: 34882263 PMCID: PMC8844166 DOI: 10.1007/s00429-021-02418-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2021] [Accepted: 10/18/2021] [Indexed: 11/09/2022]
Abstract
Hemispheric asymmetries, i.e., differences between the two halves of the brain, have extensively been studied with respect to both structure and function. Commonly employed pairwise comparisons between left and right are suitable for finding differences between the hemispheres, but they come with several caveats when assessing multiple asymmetries. What is more, they are not designed for identifying the characterizing features of each hemisphere. Here, we present a novel data-driven framework-based on machine learning-based classification-for identifying the characterizing features that underlie hemispheric differences. Using voxel-based morphometry data from two different samples (n = 226, n = 216), we separated the hemispheres along the midline and used two different pipelines: First, for investigating global differences, we embedded the hemispheres into a two-dimensional space and applied a classifier to assess if the hemispheres are distinguishable in their low-dimensional representation. Second, to investigate which voxels show systematic hemispheric differences, we employed two classification approaches promoting feature selection in high dimensions. The two hemispheres were accurately classifiable in both their low-dimensional (accuracies: dataset 1 = 0.838; dataset 2 = 0.850) and high-dimensional (accuracies: dataset 1 = 0.966; dataset 2 = 0.959) representations. In low dimensions, classification of the right hemisphere showed higher precision (dataset 1 = 0.862; dataset 2 = 0.894) compared to the left hemisphere (dataset 1 = 0.818; dataset 2 = 0.816). A feature selection algorithm in the high-dimensional analysis identified voxels that most contribute to accurate classification. In addition, the map of contributing voxels showed a better overlap with moderate to highly lateralized voxels, whereas conventional t test with threshold-free cluster enhancement best resembled the LQ map at lower thresholds. Both the low- and high-dimensional classifiers were capable of identifying the hemispheres in subsamples of the datasets, such as males, females, right-handed, or non-right-handed participants. Our study indicates that hemisphere classification is capable of identifying the hemisphere in their low- and high-dimensional representation as well as delineating brain asymmetries. The concept of hemisphere classifiability thus allows a change in perspective, from asking what differs between the hemispheres towards focusing on the features needed to identify the left and right hemispheres. Taking this perspective on hemispheric differences may contribute to our understanding of what makes each hemisphere special.
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Affiliation(s)
- Patrick Friedrich
- Institute of Neuroscience and Medicine, Brain and Behaviour (INM-7), Research Centre Jülich, 52428, Jülich, Germany.
| | - Kaustubh R Patil
- Institute of Neuroscience and Medicine, Brain and Behaviour (INM-7), Research Centre Jülich, 52428, Jülich, Germany
- Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany
| | - Lisa N Mochalski
- Institute of Neuroscience and Medicine, Brain and Behaviour (INM-7), Research Centre Jülich, 52428, Jülich, Germany
- Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany
| | - Xuan Li
- Institute of Neuroscience and Medicine, Brain and Behaviour (INM-7), Research Centre Jülich, 52428, Jülich, Germany
- Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany
| | - Julia A Camilleri
- Institute of Neuroscience and Medicine, Brain and Behaviour (INM-7), Research Centre Jülich, 52428, Jülich, Germany
- Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany
| | - Jean-Philippe Kröll
- Institute of Neuroscience and Medicine, Brain and Behaviour (INM-7), Research Centre Jülich, 52428, Jülich, Germany
- Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany
| | - Lisa Wiersch
- Institute of Neuroscience and Medicine, Brain and Behaviour (INM-7), Research Centre Jülich, 52428, Jülich, Germany
- Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany
| | - Simon B Eickhoff
- Institute of Neuroscience and Medicine, Brain and Behaviour (INM-7), Research Centre Jülich, 52428, Jülich, Germany
- Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany
| | - Susanne Weis
- Institute of Neuroscience and Medicine, Brain and Behaviour (INM-7), Research Centre Jülich, 52428, Jülich, Germany
- Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany
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Hazarika BB, Gupta D. Random vector functional link with ε-insensitive Huber loss function for biomedical data classification. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2022; 215:106622. [PMID: 35074626 DOI: 10.1016/j.cmpb.2022.106622] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 12/21/2021] [Accepted: 01/03/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND AND OBJECTIVE Biomedical data classification has been a trending topic among researchers during the last decade. Biomedical datasets may contain several features noises. Hence, the conventional machine learning model cannot efficiently handle the presence of noise in datasets. Among the several machine learning model, the random vector functional link (RVFL) is one of the most popular and efficient models for task related to both classification and regression. Despite its excellent classification performance, its performance degrades while dealing with the datasets with noise. Researchers are searching for powerful models to minimize the influence of noise in datasets. Therefore, to enhance the classification ability of RVFL on noisy datasets, this paper suggests a novel random vector functional link with ε-insensitive Huber loss function (ε-HRVFL) for biomedical data classification problems. METHODS The optimization problem of ε-HRVFL is reformulated as strongly convex minimization problems with a simple function iterative approach to find solutions. To have a better understanding of the scope of the biomedical data classification problem and potential solutions, we conducted experiments with three different types of label noise in biomedical datasets as well as a few non-biomedical datasets. The classification accuracy of the proposed ε-HRVFL model is compared statistically using Friedman test with the support vector machine, extreme learning machine with radial basis function (RBF) and sigmoid activation functions and RVFL with RBF and sigmoid activation functions. RESULTS For non-biomedical datasets, the proposed model showed the highest accuracy of 98.1332%. Moreover, for the biomedical datasets, the proposed model showed the best accuracy of 96.5229%. The proposed ε-HRVFL model with sigmoid activation function reveals the best mean ranks among the reported classifiers for both, biomedical and non-biomedical datasets. CONCLUSION Numerical results show the applicability of the proposed ε-HRVFL model. In future, the proposed ε-HRVFL can be developed to solve multiclass biomedical data classification problems. Moreover, ε-insensitive asymmetric Huber loss function based RVFL model can be developed for dealing more efficiently with these noisy biomedical datasets.
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Affiliation(s)
- Barenya Bikash Hazarika
- Department of Computer Science & Engineering, National Institute of Technology, Arunachal Pradesh 791112, India
| | - Deepak Gupta
- Department of Computer Science & Engineering, National Institute of Technology, Arunachal Pradesh 791112, India.
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25
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Sheriff M, Gayathri R. An enhanced ensemble machine learning classification method to detect attention deficit hyperactivity for various artificial intelligence and telecommunication applications. Comput Intell 2022. [DOI: 10.1111/coin.12509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Meeran Sheriff
- Department of Electronics and Communication Engineering Vel Tech High Tech Dr. Rangarajan Dr. Sakunthala Engineering College Chennai Tamilnadu India
| | - Rajagopal Gayathri
- Department of Electronics and Communication Engineering Sri Venkateshwara College of Engineering Chennai Tamilnadu India
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Jiang F, Zhu Q, Tian T. Breast Cancer Detection Based on Modified Harris Hawks Optimization and Extreme Learning Machine Embedded with Feature Weighting. Neural Process Lett 2022. [DOI: 10.1007/s11063-021-10700-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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ADHD classification using auto-encoding neural network and binary hypothesis testing. Artif Intell Med 2022; 123:102209. [PMID: 34998510 DOI: 10.1016/j.artmed.2021.102209] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 10/11/2021] [Accepted: 11/03/2021] [Indexed: 11/21/2022]
Abstract
Attention Deficit Hyperactivity Disorder (ADHD) is a highly prevalent neurodevelopmental disease of school-age children. Early diagnosis is crucial for ADHD treatment, wherein its neurobiological diagnosis (or classification) is helpful and provides the objective evidence to clinicians. The existing ADHD classification methods suffer two problems, i.e., insufficient data and feature noise disturbance from other associated disorders. As an attempt to overcome these difficulties, a novel deep-learning classification architecture based on a binary hypothesis testing framework and a modified auto-encoding (AE) network is proposed in this paper. The binary hypothesis testing framework is introduced to cope with insufficient data of ADHD database. Brain functional connectivities (FCs) of test data (without seeing their labels) are incorporated during feature selection along with those of training data and affect the sequential deep learning procedure under binary hypotheses. On the other hand, the modified AE network is developed to capture more effective features from training data, such that the difference of inter- and intra-class variability scores between binary hypotheses can be enlarged and effectively alleviate the disturbance of feature noise. On the test of ADHD-200 database, our method significantly outperforms the existing classification methods. The average accuracy reaches 99.6% with the leave-one-out cross validation. Our method is also more robust and practically convenient for ADHD classification due to its uniform parameter setting across various datasets.
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28
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Detection of Autism Spectrum Disorder using fMRI Functional Connectivity with Feature Selection and Deep Learning. Cognit Comput 2022. [DOI: 10.1007/s12559-021-09981-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Peng J, Debnath M, Biswas AK. Efficacy of novel Summation-based Synergetic Artificial Neural Network in ADHD diagnosis. MACHINE LEARNING WITH APPLICATIONS 2021. [DOI: 10.1016/j.mlwa.2021.100120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
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Identifying autism spectrum disorder symptoms using response and gaze behavior during the Go/NoGo game CatChicken. Sci Rep 2021; 11:22012. [PMID: 34759296 PMCID: PMC8581032 DOI: 10.1038/s41598-021-01050-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 10/18/2021] [Indexed: 11/08/2022] Open
Abstract
Previous studies have found that Autism Spectrum Disorder (ASD) children scored lower during a Go/No-Go task and faced difficulty focusing their gaze on the speaker's face during a conversation. To date, however, there has not been an adequate study examining children's response and gaze during the Go/No-Go task to distinguish ASD from typical children. We investigated typical and ASD children's gaze modulation when they played a version of the Go/No-Go game. The proposed system represents the Go and the No-Go stimuli as chicken and cat characters, respectively. It tracks children's gaze using an eye tracker mounted on the monitor. Statistically significant between-group differences in spatial and auto-regressive temporal gaze-related features for 21 ASD and 31 typical children suggest that ASD children had more unstable gaze modulation during the test. Using the features that differ significantly as inputs, the AdaBoost meta-learning algorithm attained an accuracy rate of 88.6% in differentiating the ASD subjects from the typical ones.
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Periyasamy R, Vibashan VS, Varghese GT, Aleem MA. Machine Learning Techniques for the Diagnosis of Attention-Deficit/Hyperactivity Disorder from Magnetic Resonance Imaging: A Concise Review. Neurol India 2021; 69:1518-1523. [PMID: 34979636 DOI: 10.4103/0028-3886.333520] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Background Attention-deficit/hyperactivity disorder (ADHD) is a neuro-developmental disease commonly seen in children and it is diagnosed via extensive interview procedures, behavioral studies, third-party observations, and comprehensive personal history. ADHD causes regional atrophy in brain regions and alters the pattern of functional brain connectivity networks. Automated/computerized methods based on magnetic resonance imaging (MRI) can replace subjective methods for the identification of ADHD. Objectives The aim of this study was to analyze various machine-learning algorithms for ADHD by feeding in vital input features extracted from functional brain connectivity and different existing methods and to review factors crucial for the diagnosis of ADHD. Methods This paper is a concise review of machine learning methods for the diagnosis of ADHD from MRI. Techniques for feature extraction, dimensionality reduction/feature selection, and classification, employed in the computerized techniques for the diagnosis of ADHD from MRI and the accuracy of classification offered by the individual methods, are focussed on the review. Conclusions Machine learning algorithms with features of functional brain connectivity networks as input, with hierarchical sparse feature elimination, exhibits the highest accuracy. Augmentation of the behavioral features does not contribute much to increased accuracy. The level of accuracy offered by the frameworks meant for the computer-aided diagnosis of ADHD, available in the literature, does not justify their feasibility in clinical practice. Computerized methods that exploit highly specific biomarkers of ADHD like brain iron concentration in Globus Pallidus, Putamen, Caudate nucleus, and thalamus as features are not available.
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Affiliation(s)
- R Periyasamy
- Department of Instrumentation and Control, National Institute of Technology, Tiruchirappalli, Tamil Nadu, India
| | - V S Vibashan
- Department of Instrumentation and Control, National Institute of Technology, Tiruchirappalli, Tamil Nadu, India
| | - George Tom Varghese
- Department of Electronics and Instrumentation, St. Joseph's College of Engineering and Technology, Palai, Kerala, India
| | - M A Aleem
- Department of Neurology, K. A. P Viswanatham Government Medical College and MGM Government Hospital, Tiruchirappalli, Tamil Nadu, India
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A Novel Knowledge Distillation-Based Feature Selection for the Classification of ADHD. Biomolecules 2021; 11:biom11081093. [PMID: 34439759 PMCID: PMC8393979 DOI: 10.3390/biom11081093] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 07/21/2021] [Accepted: 07/21/2021] [Indexed: 01/17/2023] Open
Abstract
Attention Deficit Hyperactivity Disorder (ADHD) is a brain disorder with characteristics such as lack of concentration, excessive fidgeting, outbursts of emotions, lack of patience, difficulty in organizing tasks, increased forgetfulness, and interrupting conversation, and it is affecting millions of people worldwide. There is, until now, not a gold standard test using which an ADHD expert can differentiate between an individual with ADHD and a healthy subject, making accurate diagnosis of ADHD a challenging task. We are proposing a Knowledge Distillation-based approach to search for discriminating features between the ADHD and healthy subjects. Learned embeddings from a large neural network, trained on the functional connectivity features, were fed to one hidden layer Autoencoder for reproduction of the embeddings using the same connectivity features. Finally, a forward feature selection algorithm was used to select a combination of most discriminating features between the ADHD and the Healthy Controls. We achieved promising classification results for each of the five individual sites. A combined accuracy of 81% in KKI, 60% Peking, 56% in NYU, 64% NI, and 56% OHSU and individual site wise accuracy of 72% in KKI, 60% Peking, 73% in NYU, 70% NI, and 71% OHSU were obtained using our extracted features. Our results also outperformed state-of-the-art methods in literature which validates the efficacy of our proposed approach.
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Cersonsky RK, Helfrecht BA, Engel EA, Kliavinek S, Ceriotti M. Improving sample and feature selection with principal covariates regression. MACHINE LEARNING-SCIENCE AND TECHNOLOGY 2021. [DOI: 10.1088/2632-2153/abfe7c] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Kim S, Lee HK, Lee K. Can the MMPI Predict Adult ADHD? An Approach Using Machine Learning Methods. Diagnostics (Basel) 2021; 11:diagnostics11060976. [PMID: 34071385 PMCID: PMC8229212 DOI: 10.3390/diagnostics11060976] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 04/25/2021] [Accepted: 05/27/2021] [Indexed: 12/24/2022] Open
Abstract
(1) Background: Adult attention-deficit/hyperactivity disorder (ADHD) symptoms cause various social difficulties due to attention deficit and impulsivity. In addition, in contrast to ADHD in childhood, ADHD in adulthood is difficult to diagnose due to mixed psychopathologies. This study aimed to determine whether it is possible to predict ADHD symptoms in adults using the Minnesota Multiphasic Personality Inventory-2 (MMPI-2) with machine learning (ML) techniques; (2) Methods: Data collected from 5726 college students were analyzed. The MMPI-2-Restructured Form (MMPI-2-RF) was used, and ADHD symptoms in adults were evaluated using the Attention-Deficit/Hyperactivity Disorder Self-Report Scale (ASRS). For statistical analysis, three ML algorithms were used, i.e., K-nearest neighbors (KNN), linear discriminant analysis (LDA), and random forest, with the ASRS evaluation result as the dependent variable and the 50 MMPI-2-RF scales as predictors; (3) Results: When the KNN, LDA, and random forest techniques were applied, the accuracy was 93.1%, 91.2%, and 93.6%, respectively, and the area under the curve (AUC) was 0.722, 0.806, and 0.790, respectively. The AUC of the LDA method was the largest, with an excellent level of diagnostic accuracy; (4) Conclusions: ML using the MMPI-2 in a large group could provide reliable accuracy in screening for adult ADHD.
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Affiliation(s)
- Sunhae Kim
- Department of Psychiatry, Hanyang University Medical Center, Seoul 04763, Korea;
| | - Hye-Kyung Lee
- Department of Nursing, College of Nursing and Health, Kongju National University, Gongju 32588, Korea;
| | - Kounseok Lee
- Department of Psychiatry, Hanyang University Medical Center, Seoul 04763, Korea;
- Correspondence: ; Tel.: +82-2-2290-8481; Fax: +82-2-2298-2055
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35
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Lama RK, Kwon GR. Diagnosis of Alzheimer's Disease Using Brain Network. Front Neurosci 2021; 15:605115. [PMID: 33613178 PMCID: PMC7894198 DOI: 10.3389/fnins.2021.605115] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 01/06/2021] [Indexed: 12/23/2022] Open
Abstract
Recent studies suggest the brain functional connectivity impairment is the early event occurred in case of Alzheimer’s disease (AD) as well as mild cognitive impairment (MCI). We model the brain as a graph based network to study these impairment. In this paper, we present a new diagnosis approach using graph theory based features from functional magnetic resonance (fMR) images to discriminate AD, MCI, and healthy control (HC) subjects using different classification techniques. These techniques include linear support vector machine (LSVM), and regularized extreme learning machine (RELM). We used pairwise Pearson’s correlation-based functional connectivity to construct the brain network. We compare the classification performance of brain network using Alzheimer’s disease neuroimaging initiative (ADNI) datasets. Node2vec graph embedding approach is employed to convert graph features to feature vectors. Experimental results show that the SVM with LASSO feature selection method generates better classification accuracy compared to other classification technique.
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Affiliation(s)
- Ramesh Kumar Lama
- The Alzheimer's Disease Neuroimaging Initiative, Department of Information and Communication Engineering, Chosun University, Gwangju, South Korea
| | - Goo-Rak Kwon
- The Alzheimer's Disease Neuroimaging Initiative, Department of Information and Communication Engineering, Chosun University, Gwangju, South Korea
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36
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Eslami T, Almuqhim F, Raiker JS, Saeed F. Machine Learning Methods for Diagnosing Autism Spectrum Disorder and Attention- Deficit/Hyperactivity Disorder Using Functional and Structural MRI: A Survey. Front Neuroinform 2021; 14:575999. [PMID: 33551784 PMCID: PMC7855595 DOI: 10.3389/fninf.2020.575999] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 12/07/2020] [Indexed: 12/15/2022] Open
Abstract
Here we summarize recent progress in machine learning model for diagnosis of Autism Spectrum Disorder (ASD) and Attention-deficit/Hyperactivity Disorder (ADHD). We outline and describe the machine-learning, especially deep-learning, techniques that are suitable for addressing research questions in this domain, pitfalls of the available methods, as well as future directions for the field. We envision a future where the diagnosis of ASD, ADHD, and other mental disorders is accomplished, and quantified using imaging techniques, such as MRI, and machine-learning models.
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Affiliation(s)
- Taban Eslami
- Department of Computer Science, Western Michigan University, Kalamazoo, MI, United States
| | - Fahad Almuqhim
- School of Computing and Information Sciences, Florida International University, Miami, FL, United States
| | - Joseph S. Raiker
- Department of Psychology, Florida International University, Miami, FL, United States
| | - Fahad Saeed
- School of Computing and Information Sciences, Florida International University, Miami, FL, United States
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37
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Wang C, Zhao H, Zhang H. Chinese College Students Have Higher Anxiety in New Semester of Online Learning During COVID-19: A Machine Learning Approach. Front Psychol 2020; 11:587413. [PMID: 33343461 PMCID: PMC7744590 DOI: 10.3389/fpsyg.2020.587413] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2020] [Accepted: 11/16/2020] [Indexed: 12/13/2022] Open
Abstract
The COVID-19 pandemic has caused tremendous loss starting from early this year. This article aims to investigate the change of anxiety severity and prevalence among non-graduating undergraduate students in the new semester of online learning during COVID-19 in China and also to evaluate a machine learning model based on the XGBoost model. A total of 1172 non-graduating undergraduate students aged between 18 and 22 from 34 provincial-level administrative units and 260 cities in China were enrolled onto this study and asked to fill in a sociodemographic questionnaire and the Self-Rating Anxiety Scale (SAS) twice, respectively, during February 15 to 17, 2020, before the new semester started, and March 15 to 17, 2020, 1 month after the new semester based on online learning had started. SPSS 22.0 was used to conduct t-test and single factor analysis. XGBoost models were implemented to predict the anxiety level of students 1 month after the start of the new semester. There were 184 (15.7%, Mean = 58.45, SD = 7.81) and 221 (18.86%, Mean = 57.68, SD = 7.58) students who met the cut-off of 50 and were screened as positive for anxiety, respectively, in the two investigations. The mean SAS scores in the second test was significantly higher than those in the first test (P < 0.05). Significant differences were also found among all males, females, and students majoring in arts and sciences between the two studies (P < 0.05). The results also showed students from Hubei province, where most cases of COVID-19 were confirmed, had a higher percentage of participants meeting the cut-off of being anxious. This article applied machine learning to establish XGBoost models to successfully predict the anxiety level and changes of anxiety levels 4 weeks later based on the SAS scores of the students in the first test. It was concluded that, during COVID-19, Chinese non-graduating undergraduate students showed higher anxiety in the new semester based on online learning than before the new semester started. More students from Hubei province had a different level of anxiety than other provinces. Families, universities, and society as a whole should pay attention to the psychological health of non-graduating undergraduate students and take measures accordingly. It also confirmed that the XGBoost model had better prediction accuracy compared to the traditional multiple stepwise regression model on the anxiety status of university students.
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Affiliation(s)
- Chongying Wang
- Department of Social Psychology, Zhou Enlai School of Government, Nankai University, Tianjin, China
| | - Hong Zhao
- Department of General Computer, College of Computer Science, Nankai University, Tianjin, China
| | - Haoran Zhang
- Department of General Computer, College of Computer Science, Nankai University, Tianjin, China
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Shao L, You Y, Du H, Fu D. Classification of ADHD with fMRI data and multi-objective optimization. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2020; 196:105676. [PMID: 32791440 DOI: 10.1016/j.cmpb.2020.105676] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 07/20/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND AND OBJECTIVE Dataset imbalance is an important problem in neuroimaging. Imbalanced datasets would cause the performance degradation of a classifier by utilizing imbalanced learning, which tends to overfocus on the majority class. In this paper, we consider an imbalanced neuroimaging classification problem, namely, classification of attention deficit hyperactivity disorder (ADHD) using resting-state functional magnetic resonance imaging. METHODS We propose a multi-objective classification scheme based on support vector machine (SVM). Our scheme addresses the imbalanced dataset problem by using a three objective SVM model with the positive and negative empirical errors being handled explicitly and separately. Moreover, an interactive multi-objective method incorporating the decision maker's preference is adopted, thus a preferred subset of pareto optimal classifiers for decision making can be obtained. RESULTS The proposed scheme is assessed on five datasets from the ADHD- 200 consortium. Numerical results show that the proposed multi-objective scheme considerably outperforms some traditional classification methods in the literature. CONCLUSION The proposed multi-objective classification scheme avoids hyper-parameter selection, it effectively addresses dataset imbalanced problem from algorithm level. The scheme can not only be used in the diagnosis of ADHD but also in the diagnosis of other diseases, such as Alzheimer and Autism etc.
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Affiliation(s)
- Lizhen Shao
- Key Laboratory of Knowledge Automation for Industrial Processes of Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing 100083, China.
| | - Yang You
- Key Laboratory of Knowledge Automation for Industrial Processes of Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing 100083, China.
| | - Haipeng Du
- Key Laboratory of Knowledge Automation for Industrial Processes of Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Dongmei Fu
- Key Laboratory of Knowledge Automation for Industrial Processes of Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing 100083, China
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Slobodin O, Yahav I, Berger I. A Machine-Based Prediction Model of ADHD Using CPT Data. Front Hum Neurosci 2020; 14:560021. [PMID: 33093829 PMCID: PMC7528635 DOI: 10.3389/fnhum.2020.560021] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Accepted: 08/24/2020] [Indexed: 11/17/2022] Open
Abstract
Despite the popularity of the continuous performance test (CPT) in the diagnosis of attention-deficit/hyperactivity disorder (ADHD), its specificity, sensitivity, and ecological validity are still debated. To address some of the known shortcomings of traditional analysis and interpretation of CPT data, the present study applied a machine learning-based model (ML) using CPT indices for the Prediction of ADHD.Using a retrospective factorial fitting, followed by a bootstrap technique, we trained, cross-validated, and tested learning models on CPT performance data of 458 children aged 6–12 years (213 children with ADHD and 245 typically developed children). We used the MOXO-CPT version that included visual and auditory stimuli distractors. Results showed that the ML proposed model performed better and had a higher accuracy than the benchmark approach that used clinical data only. Using the CPT total score (that included all four indices: Attention, Timeliness, Hyperactivity, and Impulsiveness), as well as four control variables [age, gender, day of the week (DoW), time of day (ToD)], provided the most salient information for discriminating children with ADHD from their typically developed peers. This model had an accuracy rate of 87%, a sensitivity rate of 89%, and a specificity rate of 84%. This performance was 34% higher than the best-achieved accuracy of the benchmark model. The ML detection model could classify children with ADHD with high accuracy based on CPT performance. ML model of ADHD holds the promise of enhancing, perhaps complementing, behavioral assessment and may be used as a supportive measure in the evaluation of ADHD.
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Affiliation(s)
- Ortal Slobodin
- Department of Education, Ben-Gurion University, Beer-Sheva, Israel
- *Correspondence: Ortal Slobodin
| | - Inbal Yahav
- Coller School of Management, Tel Aviv University, Tel Aviv, Israel
| | - Itai Berger
- Pediatric Neurology, Assuta Ashdod University Hospital, Ashdod, Israel
- Faculty of Health Sciences, Ben-Gurion University, Beer-Sheva, Israel
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Rashid B, Calhoun V. Towards a brain-based predictome of mental illness. Hum Brain Mapp 2020; 41:3468-3535. [PMID: 32374075 PMCID: PMC7375108 DOI: 10.1002/hbm.25013] [Citation(s) in RCA: 89] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Revised: 04/06/2020] [Accepted: 04/06/2020] [Indexed: 01/10/2023] Open
Abstract
Neuroimaging-based approaches have been extensively applied to study mental illness in recent years and have deepened our understanding of both cognitively healthy and disordered brain structure and function. Recent advancements in machine learning techniques have shown promising outcomes for individualized prediction and characterization of patients with psychiatric disorders. Studies have utilized features from a variety of neuroimaging modalities, including structural, functional, and diffusion magnetic resonance imaging data, as well as jointly estimated features from multiple modalities, to assess patients with heterogeneous mental disorders, such as schizophrenia and autism. We use the term "predictome" to describe the use of multivariate brain network features from one or more neuroimaging modalities to predict mental illness. In the predictome, multiple brain network-based features (either from the same modality or multiple modalities) are incorporated into a predictive model to jointly estimate features that are unique to a disorder and predict subjects accordingly. To date, more than 650 studies have been published on subject-level prediction focusing on psychiatric disorders. We have surveyed about 250 studies including schizophrenia, major depression, bipolar disorder, autism spectrum disorder, attention-deficit hyperactivity disorder, obsessive-compulsive disorder, social anxiety disorder, posttraumatic stress disorder, and substance dependence. In this review, we present a comprehensive review of recent neuroimaging-based predictomic approaches, current trends, and common shortcomings and share our vision for future directions.
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Affiliation(s)
- Barnaly Rashid
- Department of PsychiatryHarvard Medical SchoolBostonMassachusettsUSA
| | - Vince Calhoun
- Tri‐Institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS)Georgia State University, Georgia Institute of Technology, and Emory UniversityAtlantaGeorgiaUSA
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Altınkaynak M, Dolu N, Güven A, Pektaş F, Özmen S, Demirci E, İzzetoğlu M. Diagnosis of Attention Deficit Hyperactivity Disorder with combined time and frequency features. Biocybern Biomed Eng 2020. [DOI: 10.1016/j.bbe.2020.04.006] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Tate AE, McCabe RC, Larsson H, Lundström S, Lichtenstein P, Kuja-Halkola R. Predicting mental health problems in adolescence using machine learning techniques. PLoS One 2020; 15:e0230389. [PMID: 32251439 PMCID: PMC7135284 DOI: 10.1371/journal.pone.0230389] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Accepted: 02/28/2020] [Indexed: 12/19/2022] Open
Abstract
BACKGROUND Predicting which children will go on to develop mental health symptoms as adolescents is critical for early intervention and preventing future, severe negative outcomes. Although many aspects of a child's life, personality, and symptoms have been flagged as indicators, there is currently no model created to screen the general population for the risk of developing mental health problems. Additionally, the advent of machine learning techniques represents an exciting way to potentially improve upon the standard prediction modelling technique, logistic regression. Therefore, we aimed to I.) develop a model that can predict mental health problems in mid-adolescence II.) investigate if machine learning techniques (random forest, support vector machines, neural network, and XGBoost) will outperform logistic regression. METHODS In 7,638 twins from the Child and Adolescent Twin Study in Sweden we used 474 predictors derived from parental report and register data. The outcome, mental health problems, was determined by the Strengths and Difficulties Questionnaire. Model performance was determined by the area under the receiver operating characteristic curve (AUC). RESULTS Although model performance varied somewhat, the confidence interval overlapped for each model indicating non-significant superiority for the random forest model (AUC = 0.739, 95% CI 0.708-0.769), followed closely by support vector machines (AUC = 0.735, 95% CI 0.707-0.764). CONCLUSION Ultimately, our top performing model would not be suitable for clinical use, however it lays important groundwork for future models seeking to predict general mental health outcomes. Future studies should make use of parent-rated assessments when possible. Additionally, it may not be necessary for similar studies to forgo logistic regression in favor of other more complex methods.
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Affiliation(s)
- Ashley E. Tate
- Department of Medical Epidemiology and Biostatics, Karolinska Institutet, Stockholm, Sweden
| | | | - Henrik Larsson
- Department of Medical Epidemiology and Biostatics, Karolinska Institutet, Stockholm, Sweden
- School of Medical Sciences, Örebro University, Örebro, Sweden
| | - Sebastian Lundström
- Centre for Ethics, Law and Mental Health (CELAM), University of Gothenburg, Gothenburg, Sweden
- Gillberg Neuropsychiatry Centre, University of Gothenburg, Gothenburg, Sweden
| | - Paul Lichtenstein
- Department of Medical Epidemiology and Biostatics, Karolinska Institutet, Stockholm, Sweden
| | - Ralf Kuja-Halkola
- Department of Medical Epidemiology and Biostatics, Karolinska Institutet, Stockholm, Sweden
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Multimodal neuroimaging-based prediction of adult outcomes in childhood-onset ADHD using ensemble learning techniques. NEUROIMAGE-CLINICAL 2020; 26:102238. [PMID: 32182578 PMCID: PMC7076568 DOI: 10.1016/j.nicl.2020.102238] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/13/2019] [Revised: 03/05/2020] [Accepted: 03/06/2020] [Indexed: 11/22/2022]
Abstract
Attention-deficit/hyperactivity disorder (ADHD) is a highly prevalent and heterogeneous neurodevelopmental disorder, which is diagnosed using subjective symptom reports. Machine learning classifiers have been utilized to assist in the development of neuroimaging-based biomarkers for objective diagnosis of ADHD. However, existing basic model-based studies in ADHD report suboptimal classification performances and inconclusive results, mainly due to the limited flexibility for each type of basic classifier to appropriately handle multi-dimensional source features with varying properties. This study applied ensemble learning techniques (ELTs), a meta-algorithm that combine several basic machine learning models into one predictive model in order to decrease variance, bias, or improve predictions, in multimodal neuroimaging data collected from 72 young adults, including 36 probands (18 remitters and 18 persisters of childhood ADHD) and 36 group-matched controls. All currently available optimization strategies for ELTs (i.e., voting, bagging, boosting and stacking techniques) were tested in a pool of semifinal classification results generated by seven basic classifiers. The high-dimensional neuroimaging features for classification included regional cortical gray matter (GM) thickness and surface area, GM volume of subcortical structures, volume and fractional anisotropy of major white matter fiber tracts, pair-wise regional connectivity and global/nodal topological properties of the functional brain network for cue-evoked attention process. As a result, the bagging-based ELT with the base model of support vector machine achieved the best results, with significant improvement of the area under the receiver of operating characteristic curve (0.89 for ADHD vs. controls and 0.9 for ADHD persisters vs. remitters). Features of nodal efficiency in right inferior frontal gyrus, right middle frontal (MFG)-inferior parietal (IPL) functional connectivity, and right amygdala volume significantly contributed to accurate discrimination between ADHD probands and controls; higher nodal efficiency of right MFG greatly contributed to inattentive and hyperactive/impulsive symptom remission, while higher right MFG-IPL functional connectivity strongly linked to symptom persistence in adults with childhood ADHD. Considering their improved robustness than the commonly implemented basic classifiers, findings suggest that ELTs may have the potential to identify more reliable neurobiological markers for neurodevelopmental disorders.
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Kassani PH, Gossmann A, Wang YP. Multimodal Sparse Classifier for Adolescent Brain Age Prediction. IEEE J Biomed Health Inform 2020; 24:336-344. [PMID: 31265424 PMCID: PMC9037951 DOI: 10.1109/jbhi.2019.2925710] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2023]
Abstract
The study of healthy brain development helps to better understand both brain transformation and connectivity patterns, which happen during childhood to adulthood. This study presents a sparse machine learning solution across whole-brain functional connectivity measures of three datasets, derived from resting state functional magnetic resonance imaging (rs-fMRI) and two task fMRI data including a working memory n-back task (nb-fMRI) and an emotion identification task (em-fMRI). The fMRI data are collected from the Philadelphia Neurodevelopmental Cohort (PNC) for the prediction of brain age in adolescents. Due to extremely large variable-to-instance ratio of PNC data, a high-dimensional matrix with several irrelevant and highly correlated features is generated, and hence a sparse learning approach is necessary to extract effective features from fMRI data. We propose a sparse learner based on the residual errors along the estimation of an inverse problem for extreme learning machine (ELM). Our proposed method is able to overcome the overlearning problem by pruning several redundant features and their corresponding output weights. The proposed multimodal sparse ELM classifier based on residual errors is highly competitive in terms of classification accuracy compared to its counterparts such as conventional ELM, and sparse Bayesian learning ELM.
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Boon HJ. What do ADHD Neuroimaging Studies Reveal for Teachers, Teacher Educators and Inclusive Education? CHILD & YOUTH CARE FORUM 2020. [DOI: 10.1007/s10566-019-09542-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Wolfers T, Beckmann CF, Hoogman M, Buitelaar JK, Franke B, Marquand AF. Individual differences v. the average patient: mapping the heterogeneity in ADHD using normative models. Psychol Med 2020; 50:314-323. [PMID: 30782224 PMCID: PMC7083555 DOI: 10.1017/s0033291719000084] [Citation(s) in RCA: 102] [Impact Index Per Article: 20.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/28/2018] [Revised: 01/04/2019] [Accepted: 01/08/2019] [Indexed: 12/26/2022]
Abstract
BACKGROUND The present paper presents a fundamentally novel approach to model individual differences of persons with the same biologically heterogeneous mental disorder. Unlike prevalent case-control analyses, that assume a clear distinction between patient and control groups and thereby introducing the concept of an 'average patient', we describe each patient's biology individually, gaining insights into the different facets that characterize persistent attention-deficit/hyperactivity disorder (ADHD). METHODS Using a normative modeling approach, we mapped inter-individual differences in reference to normative structural brain changes across the lifespan to examine the degree to which case-control analyses disguise differences between individuals. RESULTS At the level of the individual, deviations from the normative model were frequent in persistent ADHD. However, the overlap of more than 2% between participants with ADHD was only observed in few brain loci. On average, participants with ADHD showed significantly reduced gray matter in the cerebellum and hippocampus compared to healthy individuals. While the case-control differences were in line with the literature on ADHD, individuals with ADHD only marginally reflected these group differences. CONCLUSIONS Case-control comparisons, disguise inter-individual differences in brain biology in individuals with persistent ADHD. The present results show that the 'average ADHD patient' has limited informative value, providing the first evidence for the necessity to explore different biological facets of ADHD at the level of the individual and practical means to achieve this end.
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Affiliation(s)
- Thomas Wolfers
- Department of Human Genetics, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands
- Donders Centre for Cognitive Neuroimaging, Donders Institute for Brain, Cognition and Behavior, Radboud University, Nijmegen, The Netherlands
| | - Christian F. Beckmann
- Donders Centre for Cognitive Neuroimaging, Donders Institute for Brain, Cognition and Behavior, Radboud University, Nijmegen, The Netherlands
- Department of Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands
- Centre for Functional MRI of the Brain (FMRIB), University of Oxford, Oxford, UK
| | - Martine Hoogman
- Department of Human Genetics, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands
- Donders Centre for Cognitive Neuroimaging, Donders Institute for Brain, Cognition and Behavior, Radboud University, Nijmegen, The Netherlands
| | - Jan K. Buitelaar
- Department of Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands
- Karakter Child and Adolescent Psychiatry University Center, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Barbara Franke
- Department of Human Genetics, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands
- Department of Psychiatry, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands
| | - Andre F. Marquand
- Donders Centre for Cognitive Neuroimaging, Donders Institute for Brain, Cognition and Behavior, Radboud University, Nijmegen, The Netherlands
- Department of Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, Nijmegen, The Netherlands
- Department of Neuroimaging, Institute of Psychiatry, King's College London, London, UK
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Mostapha M, Styner M. Role of deep learning in infant brain MRI analysis. Magn Reson Imaging 2019; 64:171-189. [PMID: 31229667 PMCID: PMC6874895 DOI: 10.1016/j.mri.2019.06.009] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Revised: 06/06/2019] [Accepted: 06/08/2019] [Indexed: 12/17/2022]
Abstract
Deep learning algorithms and in particular convolutional networks have shown tremendous success in medical image analysis applications, though relatively few methods have been applied to infant MRI data due numerous inherent challenges such as inhomogenous tissue appearance across the image, considerable image intensity variability across the first year of life, and a low signal to noise setting. This paper presents methods addressing these challenges in two selected applications, specifically infant brain tissue segmentation at the isointense stage and presymptomatic disease prediction in neurodevelopmental disorders. Corresponding methods are reviewed and compared, and open issues are identified, namely low data size restrictions, class imbalance problems, and lack of interpretation of the resulting deep learning solutions. We discuss how existing solutions can be adapted to approach these issues as well as how generative models seem to be a particularly strong contender to address them.
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Affiliation(s)
- Mahmoud Mostapha
- Department of Computer Science, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, United States of America.
| | - Martin Styner
- Department of Computer Science, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, United States of America; Neuro Image Research and Analysis Lab, Department of Psychiatry, University of North Carolina at Chapel Hill, NC 27599, United States of America.
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Eslami T, Mirjalili V, Fong A, Laird AR, Saeed F. ASD-DiagNet: A Hybrid Learning Approach for Detection of Autism Spectrum Disorder Using fMRI Data. Front Neuroinform 2019; 13:70. [PMID: 31827430 PMCID: PMC6890833 DOI: 10.3389/fninf.2019.00070] [Citation(s) in RCA: 124] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Accepted: 11/12/2019] [Indexed: 01/09/2023] Open
Abstract
Heterogeneous mental disorders such as Autism Spectrum Disorder (ASD) are notoriously difficult to diagnose, especially in children. The current psychiatric diagnostic process is based purely on the behavioral observation of symptomology (DSM-5/ICD-10) and may be prone to misdiagnosis. In order to move the field toward more quantitative diagnosis, we need advanced and scalable machine learning infrastructure that will allow us to identify reliable biomarkers of mental health disorders. In this paper, we propose a framework called ASD-DiagNet for classifying subjects with ASD from healthy subjects by using only fMRI data. We designed and implemented a joint learning procedure using an autoencoder and a single layer perceptron (SLP) which results in improved quality of extracted features and optimized parameters for the model. Further, we designed and implemented a data augmentation strategy, based on linear interpolation on available feature vectors, that allows us to produce synthetic datasets needed for training of machine learning models. The proposed approach is evaluated on a public dataset provided by Autism Brain Imaging Data Exchange including 1, 035 subjects coming from 17 different brain imaging centers. Our machine learning model outperforms other state of the art methods from 10 imaging centers with increase in classification accuracy up to 28% with maximum accuracy of 82%. The machine learning technique presented in this paper, in addition to yielding better quality, gives enormous advantages in terms of execution time (40 min vs. 7 h on other methods). The implemented code is available as GPL license on GitHub portal of our lab (https://github.com/pcdslab/ASD-DiagNet).
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Affiliation(s)
- Taban Eslami
- Department of Computer Science, Western Michigan University, Kalamazoo, MI, United States
- School of Computing and Information Science, Florida International University, Miami, FL, United States
| | - Vahid Mirjalili
- Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, United States
| | - Alvis Fong
- Department of Computer Science, Western Michigan University, Kalamazoo, MI, United States
| | - Angela R. Laird
- Department of Physics, Florida International University, Miami, FL, United States
| | - Fahad Saeed
- School of Computing and Information Science, Florida International University, Miami, FL, United States
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Sachnev V, Suresh S, Sundararajan N, Mahanand BS, Azeem MW, Saraswathi S. Multi-Region Risk-Sensitive Cognitive Ensembler for Accurate Detection of Attention-Deficit/Hyperactivity Disorder. Cognit Comput 2019. [DOI: 10.1007/s12559-019-09636-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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50
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Anderson AN, King JB, Anderson JS. Neuroimaging in Psychiatry and Neurodevelopment: why the emperor has no clothes. Br J Radiol 2019; 92:20180910. [PMID: 30864835 DOI: 10.1259/bjr.20180910] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Neuroimaging has been a dominant force in guiding research into psychiatric and neurodevelopmental disorders for decades, yet researchers have been unable to formulate sensitive or specific imaging tests for these conditions. The search for neuroimaging biomarkers has been constrained by limited reproducibility of imaging techniques, limited tools for evaluating neurochemistry, heterogeneity of patient populations not defined by brain-based phenotypes, limited exploration of temporal components of brain function, and relatively few studies evaluating developmental and longitudinal trajectories of brain function. Opportunities for development of clinically impactful imaging metrics include longer duration functional imaging data sets, new engineering approaches to mitigate suboptimal spatiotemporal resolution, improvements in image post-processing and analysis strategies, big data approaches combined with data sharing of multisite imaging samples, and new techniques that allow dynamical exploration of brain function across multiple timescales. Despite narrow clinical impact of neuroimaging methods, there is reason for optimism that imaging will contribute to diagnosis, prognosis, and treatment monitoring for psychiatric and neurodevelopmental disorders in the near future.
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Affiliation(s)
| | - Jace B King
- 2Department of Radiology and Imaging Sciences, University of Utah, Salt Lake City, UT
| | - Jeffrey S Anderson
- 2Department of Radiology and Imaging Sciences, University of Utah, Salt Lake City, UT
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