Unveiling the conservation biogeography of a data-deficient endangered bird species under climate change

Impacts of climate change and human activities on three Glires pests of the Qinghai-Tibet Plateau

BACKGROUND

The range of Glires is influenced by human activities and climate change. However, the extent to which human activities and environmental changes have contributed to this relationship remains unclear. We examined alterations in the distribution changes and driving factors of the Himalayan marmot, plateau pika, and plateau zokor on the Qinghai-Tibet Plateau (QTP) using the maximum entropy (MaxEnt) model and a geographical detector (Geodetector).

RESULTS

The MaxEnt model showed that the contribution rates of the human footprint index (HFI) to the distribution patterns of the three types of Glires were 46.70%, 58.70%, and 59.50%, respectively. The Geodetector results showed that the distribution pattern of the Himalayan marmot on the QTP was influenced by altitude and the normalized difference vegetation index (NDVI). The distribution patterns for plateau pikas and plateau zokors were driven by HFI and NDVI. Climate has played a substantial role in shaping suitable habitats for these three Glires on the QTP. Their suitable area is expected to decrease over the next 30-50 years, along with their niche breadth and overlap. Future suitable habitats for the three Glires tended to shift toward higher latitudes on the QTP.

CONCLUSION

These findings underscore the impacts of environmental and human factors on the distribution of the three Glires on the QTP. They have enhanced our understanding of the intricate relationships between Glires niches and environments. This can aid in identifying necessary interventions for developing effective early warning systems and prevention strategies to mitigate Glires infestations and plague epidemics on the QTP. © 2024 Society of Chemical Industry.

Potential planting regions of Pterocarpus santalinus (Fabaceae) under current and future climate in China based on MaxEnt modeling

This study modeled the habitat distribution of Pterocarpus santalinus, a valuable rosewood species, across China under current and future climate scenarios (SSPs126, SSPs245, and SSPs585) using MaxEnt. Our findings reveal that the current suitable habitat, spanning approximately 409,600 km2, is primarily located in the central and southern parts of Guangdong, Guangxi, Fujian, and Yunnan, as well as in the Hainan provinces, along with the coastal regions of Taiwan, and the Sichuan-Chongqing border. The habitat's distribution is significantly influenced by climatic factors such as temperature seasonality (bio4), mean temperature of the wettest quarter (bio8), annual mean temperature (bio1), and annual precipitation (bio12), while terrain and soil factors play a lesser role. Under future climate scenarios, the suitable habitat for P. santalinus is projected to expand, with a northeastward shift in its distribution center. This research not only sheds light on the geoecological characteristics and geographical distribution of P. santalinus in China but also offers a scientific basis for planning its cultivation areas and enhancing cultivation efficiency under changing climate conditions.

Changes in the Range of Four Advantageous Grasshopper Habitats in the Hexi Corridor under Future Climate Conditions

Angaracris rhodopa (Fischer et Walheim), Calliptamus abbreviatus (Ikonnikov), Myrmeleotettix palpalis (Zubowsky), and Oedaleus decorus asiaticus (Bey-Bienko) are the main grasshoppers that harm the natural grassland in the Hexi Corridor in Gansu, northwest China. In this study, the MaxEnt model was employed to identify the key environmental factors affecting the distribution of the four grasshoppers' habitats and to assess their distribution under current and future climate conditions. The aim was to provide a basis for grasshopper monitoring, prediction, and precise control. In this study, distribution of suitable habitats for A. rhodopa, C. abbreviates, M. palpalis, O. decorus asiaticus were predicted under current and future climatic scenarios using the Maxent model. The average AUC (area under the ROC curve) and TSS (true skill statistic) values of the four grasshoppers were greater than 0.9, and the simulation results were excellent and highly reliable. The mean annual precipitation was the main factor limiting the current range of suitable areas for these four species. Under the current climate, A. rhodopa, C. abbreviatus, and O. decorus asiaticus were mainly distributed in the central and eastern parts of the Hexi Corridor, and M. palpalis was distributed throughout the Hexi Corridor, with a suitable area of 1.29 × 104, 1.43 × 104, 1.44 × 104, and 2.12 × 104 km2, accounting for 13.7%, 15.2%, 15.3%, and 22.5% of the total area of the grasslands in the Hexi Corridor, respectively. The highly suitable areas of A. rhodopa, C. abbreviatus, and O. decorus asiaticus were mainly distributed in the eastern-central part of Zhangye City, the western part of Wuwei City, and the western and southern parts of Jinchang City, with areas of 0.20 × 104, 0.29 × 104, and 0.35 × 104 km2, accounting for 2.2%, 3%, and 3.7% of the grassland area, respectively. The high habitat of M. palpalis was mainly distributed in the southeast of Jiuquan City, the west, middle, and east of Zhangye City, the west of Wuwei City, and the west and south of Jinchang City, with an area of 0.32 × 104 km2, accounting for 3.4% of the grassland area. In the 2030s, the range of A. rhodopa, C. abbreviatus, and O. decorus asiaticus was predicted to increase; the range of M. palpalis will decrease. The results of this study could provide a theoretical basis for the precise monitoring and control of key areas of grasshoppers in the Hexi Corridor.

Genomic insights into the endangered white-eared night heron (Gorsachius magnificus)

OBJECTIVES

A genome sequence of a threatened species can provide valuable genetic information that is important for improving the conservation strategies. The white-eared night heron (Gorsachius magnificus) is an endangered and poorly known ardeid bird. In order to support future studies on conservation genetics and evolutionary adaptation of this species, we have reported a de novo assembled and annotated whole-genome sequence of the G. magnificus.

DATA DESCRIPTION

The final draft genome assembly of the G. magnificus was 1.19 Gb in size, with a contig N50 of 187.69 kb and a scaffold N50 of 7,338.28 kb. According to BUSCO analysis, the genome assembly contained 97.49% of the 8,338 genes in the Aves (odb10) dataset. Approximately 10.52% of the genome assembly was composed of repetitive sequences. A total of 14,613 protein-coding genes were predicted in the genome assembly, with functional annotations available for 14,611 genes. The genome assembly exhibited a heterozygosity rate of 0.49 heterozygosity per kilobase pair. This draft genome of G. magnificus provides valuable genomic resources for future studies on conservation and evolution.

Chromosome-scale Genome assembly of the critically endangered White-eared Night-Heron (Gorsachius magnificus)

The White-eared Night-Heron (Gorsachius magnificus, G. magnificus) is a critically endangered heron that is very poorly known and only found in southern China and northern Vietnam, with an estimated population of 250 to 999 mature individuals. However, the lack of a reference genome has hindered the implementation of conservation management efforts. In this study, we present the first high-quality chromosome-scale reference genome, which was assembled by integrating PacBio long-reads sequencing, Illumina paired-end sequencing, and Hi-C technology. The genome has a total length of 1.176 Gb, with a scaffold N50 of 84.77 Mb and a contig N50 of 18.46 Mb. Utilizing Hi-C data, we anchored 99.89% of the scaffold sequences onto 29 pairs of chromosomes. Additionally, we identified 18,062 protein-coding genes in the genome, with 95.00% of which were functionally annotated. Notably, BUSCO assessment confirmed the presence of 97.2% of highly conserved Aves genes within the genome. This chromosome-level genome assembly and annotation will be valuable for future investigating the G. magnificus's evolutionary adaptation and conservation.

MaxEnt model strategies to studying current and future potential land suitability dynamics of wheat, soybean and rice cultivation under climatic change scenarios in East Asia

Climate change and variability are projected to alter the geographic suitability of lands for crops cultivation. Accurately predicting changes in the potential current and future land suitability distribution dynamics of wheat (Triticum aestivum), soybean (Glycine max) and rice (Oryza sativa) crops due to climate change scenarios is critical to adapting and mitigating the impacts of bioclimatic changes, and plays a significant role in securing food security in East Asia region. This study compiled large datasets of wheat, soybean and rice occurrence locations from GBIF and 19 bioclimatic variables obtained from the WorldClim database that affect crops growth. We recognized potential future suitable distribution regions for crops under the one socioeconomic pathway, (SSP585) for 2021-2040 and 2041-2060, using the MaxEnt model. The accuracy of the MaxEnt was highly significant with mean AUC values ranging from 0.833 to 0.882 for all models evaluated. The jackknife test revealed that for wheat, Bio4 and Bio12 contributed 17.6% and 12.6%, for soybean Bio10 and Bio12 contributed 15.6% and 49.5%, while for rice Bio12 and Bio14 contributed 12.9% and 36.0% to the MaxEnt model. In addition, cultivation aptitude for wheat, soybean, and rice increased in southeast China, North Korea, South Korea, and Japan, while decreasing in Mongolia and northwest China. Climate change is expected to increase the high land suitability for wheat, soybean, and rice in East Asia. Simulation results indicate an average decrease of unsuitable areas of -98.5%, -41.2% and -36.3% for wheat, soybean and rice from 2060 than that of current land suitability. In contrast, the high land suitable for wheat, soybean and rice cultivation is projected to increase by 75.1%, 68.5% and 81.9% from 2060 as compared with current. The findings of this study are of utmost importance in the East Asia region as they present an opportunity for policy makers to develop appropriate adaptation and mitigation strategies required to sustain crops distribution under future climates. Although the risks of wheat, soybean and rice cultivation may be significantly higher in the future because of high temperatures, heat waves, and droughts caused by climate change.

Prediction of the potentially suitable areas of Ligularia virgaurea and Ligularia sagitta on the Qinghai-Tibet Plateau based on future climate change using the MaxEnt model

Ligularia virgaurea and Ligularia sagitta are two species of poisonous plants with strong invasiveness in natural grasslands in China that have caused considerable harm to animal husbandry and the ecological environment. However, little is known about their suitable habitats and the key environmental factors affecting their distribution. Although some studies have reported the distributions of poisonous plants on the Qinghai-Tibet Plateau (QTP) and predicted their potential distributions at local scales in some regions under climate change, there have been few studies on the widespread distributions of L. virgaurea and L. sagitta. In this study, we recorded 276 and 118 occurrence points of L. virgaurea and L. sagitta on the QTP using GPS, and then used the MaxEnt model to predict the distribution of suitable habitats. Results showed that (1) under current climate conditions, L. virgaurea and L. sagitta are mainly distributed in southern Gansu, eastern Qinghai, northwestern Sichuan, eastern Tibet, and southwestern Yunnan, accounting for approximately 34.9% and 39.8% of the total area of the QTP, respectively; (2) the main environmental variables affecting the distribution of suitable habitats for L. virgaurea and L. sagitta are the Human Footprint Index (52.8%, 42.2%), elevation (11%, 4.4%), soil total nitrogen (18.9%, 4.2%), and precipitation seasonality (5.1%, 7.3%); and (3) in the future, in the 2050s and 2070s, the area of habitat of intermediate suitability for L. virgaurea will spread considerably in northwest Sichuan, while that of high suitability for L. sagitta will spread to eastern Tibet and western Sichuan.

Realized niche shift of an invasive widow spider: drivers and impacts of human activities

Background

Predicting invasiveness requires an understanding of the propensity of a given species to thrive in areas with novel ecological challenges. Evaluation of realized niche shift of an invasive species in its invasive range, detecting the main drivers of the realized niche shift, and predicting the potential distribution of the species can provide important information for the management of populations of invasive species and the conservation of biodiversity. The Australian redback spider, Latrodectus hasselti, is a widow spider that is native to Australia and established in Japan, New Zealand, and Southeast Asia. We used ecological niche models and ordinal comparisons in an integrative method to compare the realized niches of native and invasive populations of this spider species. We also assessed the impact of several climatic predictor variables and human activity on this niche shift. We hypothesized that human impact is important for successful establishment of this anthropophilic species, and that climatic predictor variables may determine suitable habitat and thus predict invasive ranges.

Results

Our models showed that L. hasselti distributions are positively influenced by human impact in both of the native and invasive ranges. Maximum temperature was the most important climatic variable in predictions of the distribution of native populations, while precipitation seasonality was the most important in predictions of invasive populations. The realized niche of L. hasselti in its invasive range differed from that in its native range, indicating possible realized niche shift.

Conclusions

We infer that a preference for human-disturbed environments may underlie invasion and establishment in this spider species, as anthropogenic habitat modifications could provide shelters from unsuitable climatic conditions and extreme climatic stresses to the spiders. Because Australia and the countries in which the species is invasive have differing climates, differences in the availability of certain climatic conditions could have played a role in the realized niche shift of L. hasselti.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12983-022-00470-z.

Climate Change and Dispersal Ability Jointly Affects the Future Distribution of Crocodile Lizards

Crocodile lizards (Shinisaurus crocodilurus) are an endangered, 'living fossil' reptile from a monophyletic family and therefore, a high priority for conservation. We constructed climatic models to evaluate the potential impact of climate change on the distribution of crocodile lizards for the period 2000 to 2100 and determined the key environmental factors that affect the dispersal of this endangered species. For the construction of climatic models, we used 985 presence-only data points and 6 predictor variables which showed excellent performance (AUC = 0.974). The three top-ranked factors predicting crocodile lizard distribution were precipitation of the wettest month (bio13, 37.1%), precipitation of the coldest quarter (bio19, 17.9%), and temperature seasonality (bio4, 14.3%). Crocodile lizards were, just as they are now, widely distributed in the north of Guangdong Province in China and Quảng Ninh Province in Vietnam at the last glacial maximum (LGM). Since the LGM, there has been an increase in suitable habitats, particularly in east-central Guangxi Province, China. Under future global warming scenarios, the potential habitat for crocodile lizards is expected to decrease significantly in the next 100 years. Under the most optimistic scenario, only 7.35% to 6.54% of suitable habitat will remain, and under the worst climatic scenario, only 8.34% to 0.86% of suitable habitat will remain. Models for no dispersal and limited dispersal showed that all crocodile lizards would lose habitat as temperatures increase. Our work contributes to an increased understanding of the current and future spatial distribution of the species, supporting practical management and conservation plans.

Current breeding distributions and predicted range shifts under climate change in two subspecies of Black-tailed Godwits in Asia

Habitat loss and shifts associated with climate change threaten global biodiversity, with impacts likely to be most pronounced at high latitudes. With the disappearance of the tundra breeding habitats, migratory shorebirds that breed at these high latitudes are likely to be even more vulnerable to climate change than those in temperate regions. We examined this idea using new distributional information on two subspecies of Black-tailed Godwits Limosa limosa in Asia: the northerly, bog-breeding L. l. bohaii and the more southerly, steppe-breeding L. l. melanuroides. Based on breeding locations of tagged and molecularly assayed birds, we modelled the current breeding distributions of the two subspecies with species distribution models, tested those models for robustness and then used them to predict climatically suitable breeding ranges in 2070 according to bioclimatic variables and different climate change scenarios. Our models were robust and showed that climate change is expected to push bohaii into the northern rim of the Eurasian continent. Melanuroides is also expected to shift northward, stopping in the Yablonovyy and Stanovoy Ranges, and breeding elevation is expected to increase. Climatically suitable breeding habitat ranges would shrink to 16% and 11% of the currently estimated ranges of bohaii and melanuroides, respectively. Overall, this study provides the first predictions for the future distributions of two little-known Black-tailed Godwit subspecies and highlights the importance of factoring in shifts in bird distribution when designing climate-proof conservation strategies.

Predicting the potential distribution of Campsis grandiflora in China under climate change

Because the research on the geographical distribution of species significantly influences people's understanding of species protection and utilization, it is important to study the influence of climate change on plants' geographical distribution patterns. Based on 166 distribution records and 11 climate and terrain variables, we used MaxEnt (Maximum Entropy) model and ArcGIS software to predict the potential distribution of Campsis grandiflora under climate change and then determined the dominant climate variables that significantly affected its geographical distribution. In our study, the area under the curve (AUC) value of the training data was 0.939, proving the accuracy of our prediction. Under current climate conditions, the area of potentially suitable habitat is 238.29 × 10⁴ km², mainly distributed in northern, central, southern, and eastern China. The dominant variables that affect the geographical distribution of C. grandiflora are temperature, precipitation and altitude. In the future climate change scenario, the total area of suitable habitat and highly suitable habitat will increase, whereas the area of moderately suitable habitat and poorly suitable habitat will decrease. In addition, the centroid of the potentially suitable area of C. grandiflora will migrate to higher latitude and higher altitudes areas. The results could give strategic guidance for development, protection, and utilization of C. grandiflora in China.

MaxEnt Modeling to Estimate the Impact of Climate Factors on Distribution of Pinus densiflora

Pinus densiflora is an important evergreen coniferous species with both economic and ecological value. It is an endemic species in East Asia. Global climate warming greatly interferes with species survival. This study explored the impact of climate change on the distribution of this species and the relationship between its geographical distribution and climate demand, so as to provide a theoretical basis for the protection of P. densiflora under the background of global warming. This research used 565 valid data points and 19 typical climatic environmental factors distributed in China, Japan, and South Korea. The potential distribution area of P. densiflora in East Asia under the last glacial maximum (LGM), mid-Holocene, the current situation and two scenarios (RCP 2.6 and RCP 8.5) in the future (2050s and 2070s) was simulated by the MaxEnt model. The species distribution model toolbox in ArcGIS software was used to analyze the potential distribution range and change of P. densiflora. The contribution rates, jackknife test and environmental variable response curves were used to assess the importance of key climate factors. The area under the receiver-operating characteristic curve (AUC) was used to evaluate model accuracy. The MaxEnt model had an excellent simulation effect (AUC = 0.982). The forecast showed that the Korean Peninsula and Japan were highly suitable areas for P. densiflora, and the area had little change. Moreover, during the LGM, there was no large-scale retreat to the south, and it was likely to survive in situ in mountain shelters. The results suggested that Japan may be the origin of P. densiflora rather than the Shandong Peninsula of China. The distribution area of P. densiflora in the mid-Holocene and future scenarios was reduced compared with the current distribution, and the reduction of future distribution was greater, indicating that climate warming will have certain negative impacts on the distribution of P. densiflora in the future. The precipitation of the warmest quarter (Bio18), temperature seasonality (Bio4), mean annual temperature (Bio1) and mean temperature of the wettest quarter (Bio8) had the greatest impact on the distribution area of P. densiflora.

Potential Global Distribution of Daktulosphaira vitifoliae under Climate Change Based on MaxEnt

Simple Summary

Daktulosphaira vitifoliae (Fitch) or grape phylloxera is a small, invasive, and sap-sucking insect widely distribution in most viticultural areas of the world. In the current study, the potential distribution ranges of the leaf-feeding population under current and future environmental conditions were simulated by MaxEnt software. The highly suitable ranges of D. vitifoliae mainly focus on Europe, East and North China, Japan, the Eastern USA, Uruguay, and the Southeast of South America under current climatic conditions. The highly suitable ranges were obviously increased under future climate conditions.

Abstract

Grape phylloxera, Daktulosphaira vitifoliae, is a small, invasive, sap-sucking pest that is widely present in most viticulture regions all over the world. It is originally from North America and feeds on grapevine roots and leaves. In the current study, the potential distribution area of the leaf-feeding population was investigated with MaxEnt based on population occurrence data under different environmental variables. Results suggested that under current climatic conditions, Europe, East and North China, Japan, the Eastern USA, Uruguay, and the Southeast of South America are highly suitable areas for the occurrence of phylloxera leaf populations. The results showed that isothermality and precipitation of coldest quarter were major factors which contribute more than 60% of the model under current climate conditions. Our results provide important information for governmental decision makers and famers to develop control and management strategies against D. vitifoliae, and can also be used as a reference for studies on other invasive pest.

Combining the responses of habitat suitability and connectivity to climate change for an East Asian endemic frog

Background

Understanding the impacts of past and contemporary climate change on biodiversity is critical for effective conservation. Amphibians have weak dispersal abilities, putting them at risk of habitat fragmentation and loss. Both climate change and anthropogenic disturbances exacerbate these risks, increasing the likelihood of additional amphibian extinctions in the near future. The giant spiny frog (Quasipaa spinosa), an endemic species to East Asia, has faced a dramatic population decline over the last few decades. Using the giant spiny frog as an indicator to explore how past and future climate changes affect landscape connectivity, we characterized the shifts in the suitable habitat and habitat connectivity of the frog.

Results

We found a clear northward shift and a reduction in the extent of suitable habitat during the Last Glacial Maximum for giant spiny frogs; since that time, there has been an expansion of the available habitat. Our modelling showed that “overwarm” climatic conditions would most likely cause a decrease in the available habitat and an increase in the magnitude of population fragmentation in the future. We found that the habitat connectivity of the studied frogs will decrease by 50–75% under future climate change. Our results strengthen the notion that the mountains in southern China and the Sino-Vietnamese transboundary regions can act as critical refugia and priority areas of conservation planning going forward.

Conclusions

Given that amphibians are highly sensitive to environmental changes, our findings highlight that the responses of habitat suitability and connectivity to climate change can be critical considerations in future conservation measures for species with weak dispersal abilities and should not be neglected, as they all too often are.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12983-021-00398-w.

Shifts in bird ranges and conservation priorities in China under climate change

Climate change is one of the most significant causes of species range shift and extinction. Based on a citizen science dataset of birds in China, the Bird Report, we developed a high-resolution map of bird species richness in China, and simulated the range shifts and area changes of the 1,042 birds through the year 2070 using three different General Circulation Models and two different Representative Concentration Pathways (RCPs, including RCP 2.6 and RCP 8.5). It was found that 241-244 (under different scenarios) bird species would lose a portion of their distribution ranges; and that most species in China would move to either higher elevations or northward. The other 798-801 species would experience range expansion. Compared to resident species (n = 516), migratory birds (n = 526) may undergo more limited range expansion but a longer range shift distance on average. The species diversity of birds will considerably increase in areas higher than 1,500 m in elevation under both RCPs. Conservation priorities with higher species richness were also identified using the Zonation model. The existing national nature reserves are not sufficient for protecting important bird habitats, especially after range shifts. Significant gaps in protected areas were observed in the northern Xinjiang, southern Tibet, Greater Khingan, Sanjiang Plain, Songnen Plain, northern Bohai Rim, and southeastern coastline areas. Many of these areas are characterized by high human populations and intensive development, and establishing sizable protected areas has become difficult. Inclusive conservation mechanisms that include restoring habitats in urban parks and sharing habitats in farmland areas, may be a feasible solution.

Predictive modelling of the distribution of Clematis sect. Fruticella s. str. under climate change reveals a range expansion during the Last Glacial Maximum

Background

The knowledge of distributional dynamics of living organisms is a prerequisite for protecting biodiversity and for the sustainable use of biotic resources. Clematis sect. Fruticella s. str. is a small group of shrubby, yellow-flowered species distributed mainly in arid and semi-arid areas of China. Plants in this section are both horticulturally and ecologically important.

Methods

Using past, present, and future environmental variables and data with Maximum Entropy (Maxent) modeling, we evaluated the importance of the environmental variables on the section's estimated distributions, thus simulating its distributional dynamics over time. The contractions and expansions of suitable habitat between the past and future scenarios and the present were then compared.

Results and Discussion

The models revealed that the areas with high and moderate suitability currently encompass about 725,110 km². The distribution centroid location varies between points in Ningxia and Inner Mongolia during the different scenarios. Elevation, Mean UV-B of Lowest Month, Precipitation of Coldest Quarter, and Mean Temperature of Driest Quarter were major factors determining the section's distribution. Our modeling indicated that Clematis sect. Fruticella underwent a significant range contraction during the last interglacial period, and then expanded during the last glacial maximum (LGM) to amounts like those of the present. Cold, dry, and relatively stable climate, as well as steppe or desert steppe environments may have facilitated range expansion of this cold-adapted, drought-resistant plant taxon during the LGM. Predicted future scenarios show little change in the amounts of suitable habitat for Clematis sect. Fruticella. This study aids understanding of the distributional dynamics of Clematis sect. Fruticella, and the results will help the conservation and sustainable use of these important woody plants in Chinese arid and semiarid areas.

Predicting the Potential Distribution of Paeonia veitchii (Paeoniaceae) in China by Incorporating Climate Change into a Maxent Model

A detailed understanding of species distribution is usually a prerequisite for the rehabilitation and utilization of species in an ecosystem. Paeonia veitchii (Paeoniaceae), which is an endemic species of China, is an ornamental and medicinal plant that features high economic and ecological values. With the decrease of its population in recent decades, it has become a locally endangered species. In present study, we modeled the potential distribution of P. veitchii under current and future conditions, and evaluated the importance of the factors that shape its distribution. The results revealed a highly and moderately suitable habitat for P. veitchii that encompassed ca. 605,114 km2. The central area lies in northwest Sichuan Province. Elevation, temperature seasonality, annual mean precipitation, and precipitation seasonality were identified as the most important factors shaping the distribution of P. veitchii. Under the scenario with a low concentration of greenhouse gas emissions (RCP 2.6), we predicted an overall expansion of the potential distribution by 2050, followed by a slight contraction in 2070. However, with the scenario featuring intense greenhouse gas emissions (RCP 8.5), the range of suitable habitat should increase with the increasing intensity of global warming. The information that was obtained in the present study can provide background information related to the long-term conservation of this species.

Predicting the distribution of poorly-documented species, Northern black widow (Latrodectus variolus) and Black purse-web spider (Sphodros niger), using museum specimens and citizen science data

Predicting species distributions requires substantial numbers of georeferenced occurrences and access to remotely sensed climate and land cover data. Reliable estimates of the distribution of most species are unavailable, either because digitized georeferenced distributional data are rare or not digitized. The emergence of online biodiversity information databases and citizen science platforms dramatically improves the amount of information available to establish current and historical distribution of lesser-documented species. We demonstrate how the combination of museum and online citizen science databases can be used to build reliable distribution maps for poorly documented species. To do so, we investigated the distribution and the potential range expansions of two north-eastern North American spider species (Arachnida: Araneae), the Northern black widow (Latrodectus variolus) and the Black purse-web spider (Sphodros niger). Our results provide the first predictions of distribution for these two species. We also found that the Northern black widow has expanded north of its previously known range providing valuable information for public health education. For the Black purse-web spider, we identify potential habitats outside of its currently known range, thus providing a better understanding of the ecology of this poorly-documented species. We demonstrate that increasingly available online biodiversity databases are rapidly expanding biogeography research for conservation, ecology, and in specific cases, epidemiology, of lesser known taxa.

MaxEnt's parameter configuration and small samples: are we paying attention to recommendations? A systematic review

Environmental niche modeling (ENM) is commonly used to develop probabilistic maps of species distribution. Among available ENM techniques, MaxEnt has become one of the most popular tools for modeling species distribution, with hundreds of peer-reviewed articles published each year. MaxEnt's popularity is mainly due to the use of a graphical interface and automatic parameter configuration capabilities. However, recent studies have shown that using the default automatic configuration may not be always appropriate because it can produce non-optimal models; particularly when dealing with a small number of species presence points. Thus, the recommendation is to evaluate the best potential combination of parameters (feature classes and regularization multiplier) to select the most appropriate model. In this work we reviewed 244 articles published between 2013 and 2015 to assess whether researchers are following recommendations to avoid using the default parameter configuration when dealing with small sample sizes, or if they are using MaxEnt as a "black box tool." Our results show that in only 16% of analyzed articles authors evaluated best feature classes, in 6.9% evaluated best regularization multipliers, and in a meager 3.7% evaluated simultaneously both parameters before producing the definitive distribution model. We analyzed 20 articles to quantify the potential differences in resulting outputs when using software default parameters instead of the alternative best model. Results from our analysis reveal important differences between the use of default parameters and the best model approach, especially in the total area identified as suitable for the assessed species and the specific areas that are identified as suitable by both modelling approaches. These results are worrying, because publications are potentially reporting over-complex or over-simplistic models that can undermine the applicability of their results. Of particular importance are studies used to inform policy making. Therefore, researchers, practitioners, reviewers and editors need to be very judicious when dealing with MaxEnt, particularly when the modelling process is based on small sample sizes.

Simulation of potential habitat overlap between red deer (Cervus elaphus) and roe deer (Capreolus capreolus) in northeastern China

Background. Understanding species distribution, especially areas of overlapping habitat between sympatric species, is essential for informing conservation through natural habitat protection. New protection strategies should simultaneously consider conservation efforts for multiple species that exist within the same landscape, which requires studies that include habitat overlap analysis.

Methods. We estimated the potential habitat of cervids, which are typical ungulates in northern China, using the present locations of red deer (Cervus elaphus; N = 90) and roe deer (Capreolus capreolus; N = 106) in a Maximum Entropy (MaxEnt) model. Our study area was a human-dominated landscape in the Tieli Forestry Bureau located at the southern slope of the Lesser Xing’an Mountains. We grouped 17 environmental predictor variables into five predictor classes (terrain, habitat accessibility, land cover, vegetation feature, and interference), which were used to build habitat suitability models.

Results. Habitat accessibility and human interferences were found to have the strongest influence on habitat suitability among the five variable classes. Among the environmental factors, distance to farmland (26.8%), distance to bush-grass land (14.6%), elevation (13.5%), and distance to water source (12.2%) were most important for red deer, distance to farmland (22.9%), distance to settlement (21.4%), elevation (11.6%), and coverage of shrub-grass (8%) were most important for roe deer. Model accuracy was high for both species (mean area under the curve (AUC) = 0.936 for red deer and 0.924 for roe deer). The overlapping habitat comprised 89.93 km² within the study area, which occupied 94% of potentially suitable habitat for red deer and 27% for roe deer.

Conclusions. In terms of habitat suitability, roe deer showed greater selectivity than red deer. The overlapping habitat was mostly located in the eastern mountains. The southwestern plain was not a suitable habitat for deer because it was close to Tieli City. Regarding management measures, we suggest that priority protection should be given to the potential areas of overlapping deer habitats found in this study.

Multi-locus analysis supports the taxonomic validity of Arborophila gingica guangxiensis Fang Zhou & Aiwu Jiang, 2008

The taxonomic status of subspecies has long been debated, especially in conservation biology. Some proposed subspecies must be evolutionarily distinct to be considered conservation units. White-necklaced Partridge (Arborophilagingica) comprises two subspecies, Arborophilagingicagingica and Arborophilagingicaguangxiensis. Arborophilagingicaguangxiensis, restricted to three isolated small areas in Guangxi, China, with limited population sizes, is a newly discovered subspecies based on recently identified geographic and phenotypic differences between Arborophilagingicagingica; however, evidence is lacking that can effectively identify whether the subspecies is evolutionarily distinct. Here, three mitochondrial DNA segments and four nuclear introns were used to test whether the two subspecies are reciprocally monophyletic, which has been proposed as an objective method to evaluate evolutionary distinctiveness. The results indicate that the two subspecies are genetically divergent and form reciprocal monophyletic groups. Therefore, this study further supports the taxonomic validity and distinctiveness of Arborophilagingicaguangxiensis and suggests that this subspecies be considered as a conservation unit.

Geographic distribution of isolated indigenous societies in Amazonia and the efficacy of indigenous territories

The headwaters of the Amazon Basin harbor most of the world’s last indigenous peoples who have limited contact with encroaching colonists. Knowledge of the geographic distribution of these isolated groups is essential to assist with the development of immediate protections for vulnerable indigenous settlements. We used remote sensing to document the locations of 28 isolated villages within the four Brazilian states of Acre, Amazonas, Roraima, and Rondônia. The sites were confirmed during previous over-flights and by image evidence of thatched-roof houses; they are estimated to host over 1,700 individuals. Locational data were used to train maximum entropy models that identified landscape and anthropogenic features associated with the occurrence of isolated indigenous villages, including elevation, proximity to streams of five different orders, proximity to roads and settlements, proximity to recent deforestation, and vegetation cover type. Isolated villages were identified at mid elevations, within 20 km of the tops of watersheds and at greater distances from existing roads and trails. We further used model results, combined with boundaries of the existing indigenous territory system that is designed to protect indigenous lands, to assess the efficacy of the existing protected area network for isolated peoples. Results indicate that existing indigenous territories encompass all of the villages we identified, and 50% of the areas with high predicted probabilities of isolated village occurrence. Our results are intended to help inform policies that can mitigate against future external threats to isolated peoples.

Impacts of climate change on the distribution of Sichuan snub-nosed monkeys (Rhinopithecus roxellana) in Shennongjia area, China

Understanding the effects of climate change on primate ranging patterns is crucial for conservation planning. Rhinopithecus roxellana is an endangered primate species distributed in mountainous forests at the elevation of 1500-3500 m a.s.l. in China. Our study site, the Shennongjia National Nature Reserve, represents the eastern-most distribution of this species. This area has experienced significant habitat loss and fragmentation because of human population growth, increased farming and logging, and climate change. To estimate how changes in temperature and rainfall will affect the presumed future distribution of this species, we examined eco-geographic factors including bioclimate, habitat (vegetation type, landcover, etc.), topography, and human impact (human population, gross domestic product, etc.), and provide suggestions for management and conservation. We used a maximum entropy approach to predict the location and distribution of habitats suitable for R. roxellana in the present, 2020, 2050, and 2080 based on 33 environmental parameters, three general circulation models, three emissions scenarios, and two dispersal hypotheses. According to the ensemble modeling, we found range reductions of almost 30% by 2020, 70% by 2050, and over 80% by 2080. Although no obvious differences were found in distribution change based on full and zero dispersal assumptions, our results revealed range reductions in response to elevational, latitudinal, and longitudinal gradients, with the monkeys forced to migrate to higher elevations over time. Bioclimte factors, such as temperature, precipitation, evapo-transpiration, and aridity condition, were dominant contributors to range shifting. As habitat loss due to human influence and climate change is likely to be even more severe in the future, we considered three conservation hot-spots in the Shennongjia area and recommended: (i) securing existing reserves and establishing new reserves, (ii) re-designing management systems to include the Shenongjia reserve and the surrounding reserves and highlighting ecosystem protection at higher elevations, and (iii) using finer-scale research to guide the conservation planning and education in order to enhance protection and awareness in the local community. National and provincial conservation policies should integrate projections of climate change in making effective conservation strategies.

Morphology, molecular genetics, and bioacoustics support two new sympatric Xenophrys toads (Amphibia: Anura: Megophryidae) in southeast China

Given their recent worldwide declines and extinctions, characterization of species-level diversity is of critical importance for large-scale biodiversity assessments and conservation of amphibians. This task is made difficult by the existence of cryptic species complexes, species groups comprising closely related and morphologically analogous species. The combination of morphology, genetic, and bioacoustic analyses permits robust and accurate species identification. Using these methods, we discovered two undescribed Xenophrys species, namely Xenophrys lini sp. nov. and Xenophrys cheni sp. nov. from the middle range of Luoxiao Mountains, southeast China. These two new species can be reliably distinguished from other known congeners by morphological and morphometric differences, distinctness in male advertisement calls, and substantial genetic distances (>3.6%) based on the mitochondrial 16s and 12s rRNA genes. The two new species, together with X. jinggangensis, are sympatric in the middle range of Luoxiao Mountains but may be isolated altitudinally and ecologically. Our study provides a first step to help resolve previously unrecognized cryptic biodiversity and provides insights into the understanding of Xenophrys diversification in the mountain complexes of southeast China.