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Camperio G, Ladd SN, Prebble M, Lloren R, Argiriadis E, Nelson DB, Krentscher C, Dubois N. Sedimentary biomarkers of human presence and taro cultivation reveal early horticulture in Remote Oceania. COMMUNICATIONS EARTH & ENVIRONMENT 2024; 5:667. [PMID: 39525699 PMCID: PMC11541199 DOI: 10.1038/s43247-024-01831-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Accepted: 10/24/2024] [Indexed: 11/16/2024]
Abstract
Remote Oceania was among the last places settled by humans. However, the timing of initial human settlements and the early introduction of horticulture remain debated. We retrieved a sediment core close to Teouma, the oldest cemetery in Remote Oceania that reveals evidence of initial settlement, horticulture practice, and concurrent climatic conditions on the island of Efate, Vanuatu. Sedimentary biomarkers indicating human presence (coprostanol and epicoprostanol), and taro cultivation (palmitone), increase simultaneously, attesting to the early introduction of horticulture by first settlers. The precipitation signal preserved in leaf waxes shows that the initial settlement occurred during a period of increasing wetness-climatic conditions favourable for the establishment of horticulture. The timing of these events is constrained by a high-resolution radiocarbon chronology that places the first unequivocal trace of human activity and horticulture at 2800 years ago. These findings advance our understanding of human history in the Pacific.
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Affiliation(s)
- Giorgia Camperio
- Department of Surface Waters Research & Management, Eawag, Dübendorf, Switzerland
- Department of Earth Sciences, ETH Zürich, Zürich, Switzerland
| | - S. Nemiah Ladd
- Department of Environmental Sciences, University of Basel, Basel, Switzerland
| | - Matiu Prebble
- School of Earth and Environment, College of Science, University of Canterbury, Christchurch, New Zealand
- Archaeology and Natural History, Culture History and Languages, The Australian National University, Canberra, Australia
| | - Ronald Lloren
- Department of Surface Waters Research & Management, Eawag, Dübendorf, Switzerland
- Department of Earth Sciences, ETH Zürich, Zürich, Switzerland
| | - Elena Argiriadis
- Institute of Polar Sciences, Venice, Italy
- Department of Environmental Sciences, Informatics and Statistics, Ca’ Foscari University, Venice, Italy
| | - Daniel B. Nelson
- Department of Environmental Sciences—Botany, University of Basel, Basel, Switzerland
| | | | - Nathalie Dubois
- Department of Surface Waters Research & Management, Eawag, Dübendorf, Switzerland
- Department of Earth Sciences, ETH Zürich, Zürich, Switzerland
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2
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Herrscher E, Valentin F, Zinger W, Pradier B, André G. Life histories in Fiji as reconstructed from first millennium CE Sigatoka Sand Dune burials using isotopes. PLoS One 2024; 19:e0300749. [PMID: 38723036 PMCID: PMC11081393 DOI: 10.1371/journal.pone.0300749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Accepted: 03/04/2024] [Indexed: 05/13/2024] Open
Abstract
This paper aims to re-examine the dietary practices of individuals buried at Sigatoka Sand Dunes site (Fiji) in Burial Ground 1 excavated by Simon Best in 1987 and 1988 using two approaches and a reassessment of their archaeological, bioarchaeological and chronological frame. First, stable carbon and nitrogen isotope analysis was applied to document dietary changes between childhood and adulthood using an intra-individual approach on paired bone-tooth. Second, the potential adaptation of the individuals to their environment was evaluated through regional and temporal comparisons using inter-individual bone analysis. Ten AMS radiocarbon dates were measured directly on human bone collagen samples, placing the series in a range of approximately 600 years covering the middle of the first millennium CE (1,888 to 1,272 cal BP). δ13C and δ15N ratios were measured on bone and tooth collagen samples from 38 adult individuals. The results show that δ15N values from tooth are higher than those s from bone while bone and tooth δ13C values are similar, except for females. Fifteen individuals were included in an intra-individual analysis based on paired bone and tooth samples, which revealed six dietary patterns distinguished by a differential dietary intake of marine resources and resources at different trophic levels. These highlight sex-specific differences not related to mortuary practices but to daily life activities, supporting the hypothesis of a sexual division of labour. Compared to other Southwest Pacific series, Sigatoka diets show a specific trend towards marine food consumption that supports the hypothesis of a relative food self-sufficiency requiring no interactions with other groups.
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Affiliation(s)
- Estelle Herrscher
- Aix Marseille University, CNRS, Minist Culture, LAMPEA, Aix–en–Provence, France
| | | | - Wanda Zinger
- Institute for Archaeological Sciences, Archaeo–and Palaeogenetics Group, University of Tübingen, Tübingen, Germany
| | | | - Guy André
- Aix Marseille University, CNRS, Minist Culture, LAMPEA, Aix–en–Provence, France
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3
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Sánchez-Cañadillas E, Beaumont J, Santana-Cabrera J, Gorton M, Arnay-de-la-Rosa M. The early lives of the islanders: Stable isotope analysis of incremental dentine collagen from the prehispanic period of the Canary Islands. AMERICAN JOURNAL OF BIOLOGICAL ANTHROPOLOGY 2023; 182:300-317. [PMID: 37530169 DOI: 10.1002/ajpa.24828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 07/11/2023] [Accepted: 07/18/2023] [Indexed: 08/03/2023]
Abstract
OBJECTIVES This study presents isotopic information for incremental dentine collagen and bone bulk collagen from individuals from the Canary Islands (Tenerife and Gran Canaria) to explore dietary differences during childhood life. MATERIALS AND METHODS Eight individuals have been studied, which comprises 122 δ15 N and δ13 C incremental dentine measurements and eight bulk bone collagen analyses. A baseline of potentially consumed food sources has been developed for comparative purposes. A food reconstruction using isotopic transferred signals (FRUITS) model of probable contributions of each food source towards the diet of each individual has been developed. All samples but one belongs to the later period of indigenous occupation of the archipelago. RESULTS The dentine collagen data are presented in correlated δ13 C and δ15 N plots per individual, showing the isotopic changes throughout time. δ15 N values for each individual tend to be variable whereas δ13 C data are generally more stable with a range of +9.1 to +14‰ for δ15 N and -17.4 to -20.8‰ for δ13 C. CONCLUSION The isotopic analysis allows for the reconstruction of eight dietary profiles, which allow us to estimate the different dietary protein sources. The FRUITS model shows different percentages of the primary food sources for each individual. Where both δ13 C and δ15 N are elevated, this could be indicative of a higher marine contribution to the diet. There appear to be two main dietary profiles identifiable in the dataset and these may be related to changes in status or place of residence. Short-term variations in δ13 C and δ15 N and opposing co-variance of isotopic values can be indicative of nutritional stress, although metabolic changes during growth are also considered.
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Affiliation(s)
- Elías Sánchez-Cañadillas
- Departamento de Geografía e Historia, Unidad de Docencia e Investigación de Prehistoria, Arqueología e Historia Antigua, Facultad de Humanidades, Universidad de La Laguna, San Cristobal de La Laguna, Spain
- Departamento de Ciencias Históricas, Facultad de Geografía e Historia, Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain
| | - Julia Beaumont
- School of Archaeological and Forensic Sciences, University of Bradford, Bradford, UK
| | - Jonathan Santana-Cabrera
- Departamento de Ciencias Históricas, Facultad de Geografía e Historia, Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain
| | - Marise Gorton
- School of Archaeological and Forensic Sciences, University of Bradford, Bradford, UK
| | - Matilde Arnay-de-la-Rosa
- Departamento de Geografía e Historia, Unidad de Docencia e Investigación de Prehistoria, Arqueología e Historia Antigua, Facultad de Humanidades, Universidad de La Laguna, San Cristobal de La Laguna, Spain
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Roberts P, Douka K, Tromp M, Bedford S, Hawkins S, Bouffandeau L, Ilgner J, Lucas M, Marzo S, Hamilton R, Ambrose W, Bulbeck D, Luu S, Shing R, Gosden C, Summerhayes G, Spriggs M. Fossils, fish and tropical forests: prehistoric human adaptations on the island frontiers of Oceania. Philos Trans R Soc Lond B Biol Sci 2022; 377:20200495. [PMID: 35249390 PMCID: PMC8899615 DOI: 10.1098/rstb.2020.0495] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
Oceania is a key region for studying human dispersals, adaptations and interactions with other hominin populations. Although archaeological evidence now reveals occupation of the region by approximately 65–45 000 years ago, its human fossil record, which has the best potential to provide direct insights into ecological adaptations and population relationships, has remained much more elusive. Here, we apply radiocarbon dating and stable isotope approaches to the earliest human remains so far excavated on the islands of Near and Remote Oceania to explore the chronology and diets of the first preserved human individuals to step across these Pacific frontiers. We demonstrate that the oldest human (or indeed hominin) fossil outside of the mainland New Guinea-Aru area dates to approximately 11 800 years ago. Furthermore, although these early sea-faring populations have been associated with a specialized coastal adaptation, we show that Late Pleistocene–Holocene humans living on islands in the Bismarck Archipelago and in Vanuatu display a persistent reliance on interior tropical forest resources. We argue that local tropical habitats, rather than purely coasts or, later, arriving domesticates, should be emphasized in discussions of human diets and cultural practices from the onset of our species' arrival in this part of the world. This article is part of the theme issue ‘Tropical forests in the deep human past’.
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Affiliation(s)
- Patrick Roberts
- Department of Archaeology, Max Planck Institute for the Science of Human History, Germany.,School of Social Science, The University of Queensland, Brisbane, Australia
| | - Katerina Douka
- Department of Archaeology, Max Planck Institute for the Science of Human History, Germany.,Department of Evolutionary Anthropology, University of Vienna, Vienna, Austria
| | - Monica Tromp
- Department of Archaeology, Max Planck Institute for the Science of Human History, Germany.,Southern Pacific Archaeological Research, Archaeology Programme, University of Otago, Dunedin, New Zealand.,Department of Anatomy, University of Otago, Dunedin, New Zealand
| | - Stuart Bedford
- Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History, Germany.,College of Asia and the Pacific, The Australian National University, Canberra, Australia
| | - Stuart Hawkins
- College of Asia and the Pacific, The Australian National University, Canberra, Australia
| | - Laurie Bouffandeau
- UMR 7209 AASPE, CNRS, Muséum National d'Histoire Naturelle, Paris, France.,CIRAP, Université de la Polynésie française, Tahiti, French Polynesia
| | - Jana Ilgner
- Department of Archaeology, Max Planck Institute for the Science of Human History, Germany
| | - Mary Lucas
- Department of Archaeology, Max Planck Institute for the Science of Human History, Germany
| | - Sara Marzo
- Department of Archaeology, Max Planck Institute for the Science of Human History, Germany
| | - Rebecca Hamilton
- Department of Archaeology, Max Planck Institute for the Science of Human History, Germany.,College of Asia and the Pacific, The Australian National University, Canberra, Australia
| | - Wallace Ambrose
- College of Asia and the Pacific, The Australian National University, Canberra, Australia
| | - David Bulbeck
- College of Asia and the Pacific, The Australian National University, Canberra, Australia
| | - Sindy Luu
- Department of Anatomy, University of Otago, Dunedin, New Zealand.,Archaeology Programme, University of Otago, Dunedin, New Zealand
| | | | - Chris Gosden
- School of Archaeology, University of Oxford, Oxford, UK
| | - Glenn Summerhayes
- School of Social Science, The University of Queensland, Brisbane, Australia.,Archaeology Programme, University of Otago, Dunedin, New Zealand.,College of Asia and the Pacific, The Australian National University, Canberra, Australia
| | - Matthew Spriggs
- School of Archaeology and Anthropology, College of Arts and Social Sciences, The Australian National University, Canberra, Australia.,Vanuatu Cultural Centre, Port Vila, Vanuatu
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5
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Tromp M, Matisoo-Smith E, Kinaston R, Bedford S, Spriggs M, Buckley H. Exploitation and utilization of tropical rainforests indicated in dental calculus of ancient Oceanic Lapita culture colonists. Nat Hum Behav 2020; 4:489-495. [PMID: 31959924 DOI: 10.1038/s41562-019-0808-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2019] [Accepted: 12/06/2019] [Indexed: 11/09/2022]
Abstract
Remote Oceania, which largely consists of islands covered in tropical forests, was the last region on earth to be successfully colonized by humans, beginning 3,000 years ago. We examined human dental calculus from burials in an ancient Lapita culture cemetery to gain insight into the early settlement of this previously untouched tropical environment, specifically on the island of Efate in Vanuatu. Dental calculus is an ideal material to analyse questions of human and plant interactions due to the ingestion of plant-derived microparticles that become incorporated into the calculus as it forms throughout a person's life. Most of the microparticles identified here are from tree and shrub resources, including a ~2,900 calibrated (cal) BP example of banana in Remote Oceania, providing direct evidence for the importance of forests and arboriculture during the settlement of Remote Oceania.
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Affiliation(s)
- Monica Tromp
- Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany. .,Department of Anatomy, School of Biomedical Sciences, University of Otago, Dunedin, New Zealand. .,Southern Pacific Archaeological Research, Archaeology Programme, School of Social Sciences, University of Otago, Dunedin, New Zealand.
| | - Elizabeth Matisoo-Smith
- Department of Anatomy, School of Biomedical Sciences, University of Otago, Dunedin, New Zealand
| | - Rebecca Kinaston
- Department of Anatomy, School of Biomedical Sciences, University of Otago, Dunedin, New Zealand
| | - Stuart Bedford
- School of Culture, History and Language, College of Asia and the Pacific, The Australian National University, Canberra, Australian Capital Territory, Australia.,Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History, Jena, Germany
| | - Matthew Spriggs
- CBAP, School of Archaeology and Anthropology, College of Arts and Social Sciences, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Hallie Buckley
- Department of Anatomy, School of Biomedical Sciences, University of Otago, Dunedin, New Zealand
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Commendador AS, Finney BP, Fuller BT, Tromp M, Dudgeon JV. Multiproxy isotopic analyses of human skeletal material from Rapa Nui: Evaluating the evidence from carbonates, bulk collagen, and amino acids. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2019; 169:714-729. [PMID: 31062347 DOI: 10.1002/ajpa.23851] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Revised: 04/24/2019] [Accepted: 04/25/2019] [Indexed: 11/08/2022]
Abstract
OBJECTIVES Stable isotope ratio analysis of bulk bone collagen dominates research into past diet; however, bone carbonate and compound specific isotope analyses (CSIA) of amino acids provide alternative, yet complementary, lines of evidence toward that same research goal. Together they inform on different aspects of diet, allowing greater certainty in reconstructions. Here we present new data on carbonate isotopes for Rapa Nui and reevaluate prehistoric diet in the context of these new and previously published bulk collagen and CSIA data. MATERIALS AND METHODS We analyzed carbon isotopes in bone carbonate from 28 prehistoric human teeth from Rapa Nui. These represent a subset of material examined previously for carbon and nitrogen isotope ratios in bulk collagen. We then reevaluate prehistoric diet in light of these and other published data. In addition, we analyzed carbon and nitrogen isotope ratios in 28 modern plant specimens from Rapa Nui to better approximate the isotopic value of the terrestrial endmember. RESULTS Bulk data suggest a predominantly terrestrial diet, with the amount of marine sources incorporated varying though time. While previously argued to reveal greater amounts of marine consumption, reanalysis of recently published CSIA data suggests this result may relate to the proportion of carbon assimilated rather than consumed. Utilizing models incorporating concentration dependence for estimating dietary proportions results in much lower estimates of marine consumption, in line with findings of the bulk data. DISCUSSION While these data indicate a larger focus on terrestrial resources, limitations in all forms of analysis make it difficult to determine exact dietary contributions in this mixed system. Better understanding of the complex physiological processes governing isotopic routing and fractionation, and knowledge of appropriate isotopic endmember values are needed to advance this research.
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Affiliation(s)
- Amy S Commendador
- Idaho Museum of Natural History, Idaho State University, Pocatello, Idaho.,Department of Biological Sciences, Idaho State University, Pocatello, Idaho
| | - Bruce P Finney
- Department of Biological Sciences, Idaho State University, Pocatello, Idaho.,Center for Archaeology, Materials and Applied Spectroscopy, Idaho State University, Pocatello, Idaho.,Department of Geosciences, Idaho State University, Pocatello, Idaho
| | - Benjamin T Fuller
- Department of Archaeology and Heritage Studies, School of Culture and Society, Aarhus University, Højbjerg, Denmark
| | - Monica Tromp
- Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany.,Department of Anatomy, University of Otago, Dunedin, New Zealand
| | - John V Dudgeon
- Center for Archaeology, Materials and Applied Spectroscopy, Idaho State University, Pocatello, Idaho
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Jarman CL, Larsen T, Hunt T, Lipo C, Solsvik R, Wallsgrove N, Ka'apu‐Lyons C, Close HG, Popp BN. Diet of the prehistoric population of Rapa Nui (Easter Island, Chile) shows environmental adaptation and resilience. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2017; 164:343-361. [PMID: 28664976 PMCID: PMC5637906 DOI: 10.1002/ajpa.23273] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2016] [Revised: 03/24/2017] [Accepted: 06/10/2017] [Indexed: 11/29/2022]
Abstract
OBJECTIVES The Rapa Nui "ecocide" narrative questions whether the prehistoric population caused an avoidable ecological disaster through rapid deforestation and over-exploitation of natural resources. The objective of this study was to characterize prehistoric human diets to shed light on human adaptability and land use in an island environment with limited resources. MATERIALS AND METHODS Materials for this study included human, faunal, and botanical remains from the archaeological sites Anakena and Ahu Tepeu on Rapa Nui, dating from c. 1400 AD to the historic period, and modern reference material. We used bulk carbon and nitrogen isotope analyses and amino acid compound specific isotope analyses (AA-CSIA) of collagen isolated from prehistoric human and faunal bone, to assess the use of marine versus terrestrial resources and to investigate the underlying baseline values. Similar isotope analyses of archaeological and modern botanical and marine samples were used to characterize the local environment. RESULTS Results of carbon and nitrogen AA-CSIA independently show that around half the protein in diets from the humans measured came from marine sources; markedly higher than previous estimates. We also observed higher δ15 N values in human collagen than could be expected from the local environment. DISCUSSION Our results suggest highly elevated δ15 N values could only have come from consumption of crops grown in substantially manipulated soils. These findings strongly suggest that the prehistoric population adapted and exhibited astute environmental awareness in a harsh environment with nutrient poor soils. Our results also have implications for evaluating marine reservoir corrections of radiocarbon dates.
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Affiliation(s)
- Catrine L. Jarman
- Department of Archaeology and AnthropologyUniversity of BristolBristolBS8 1UUGreat Britain
| | - Thomas Larsen
- Leibniz‐Laboratory for Isotope Research, Christian‐Albrechts‐UniversitätKiel24118Germany
| | - Terry Hunt
- Clark Honors College and Department of Anthropology1293 University of OregonEugeneOregon97403‐1293
| | - Carl Lipo
- Environmental Studies Program and Department of AnthropologyBinghamton UniversityBinghamtonNew York13902
| | | | - Natalie Wallsgrove
- Department of Geology & GeophysicsUniversity of Hawai'iHonoluluHawaii96822
| | - Cassie Ka'apu‐Lyons
- Department of Geology & GeophysicsUniversity of Hawai'iHonoluluHawaii96822
- Present address:
Marine Biology, University of Hawai'IKane‘oheHI96744
| | - Hilary G. Close
- Department of Geology & GeophysicsUniversity of Hawai'iHonoluluHawaii96822
- Present address:
Department of Ocean SciencesRosenstiel School of Marine and Atmospheric Science, University of Miami, 4600 Rickenbacker CausewayMiamiFL33149
| | - Brian N. Popp
- Department of Geology & GeophysicsUniversity of Hawai'iHonoluluHawaii96822
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8
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Somerville AD, Martin MA, Hayes LP, Hayward D, Walker PL, Schoeninger MJ. Exploring Patterns and Pathways of Dietary Change: Preferred Foods, Oral Health, and Stable Isotope Analysis of Hair from the Dani of Mulia, Papua, Indonesia. CURRENT ANTHROPOLOGY 2017. [DOI: 10.1086/690142] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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9
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Abstract
Understanding how systems of political and economic inequality evolved from relatively egalitarian origins has long been a focus of anthropological inquiry. Many hypotheses have been suggested to link socio-ecological features with the rise and spread of inequality, and empirical tests of these hypotheses in prehistoric and extant societies are increasing. In this review, we synthesize several streams of theory relevant to understanding the evolutionary origins, spread, and adaptive significance of inequality. We argue that while inequality may be produced by a variety of localized processes, its evolution is fundamentally dependent on the economic defensibility and transmissibility of wealth. Furthermore, these properties of wealth could become persistent drivers of inequality only following a shift to a more stable climate in the Holocene. We conclude by noting several key areas for future empirical research, emphasizing the need for more analyses of contemporary shifts toward institutionalized inequality as well as prehistoric cases.
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10
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Abstract
We report the unprecedented Lapita exploitation and subsequent extinction of large megafauna tortoises (?Meiolania damelipi) on tropical islands during the late Holocene over a 281,000 km2 region of the southwest Pacific spanning from the Vanuatu archipelago to Viti Levu in Fiji. Zooarchaeological analyses have identified seven early archaeological sites with the remains of this distinctive hornless tortoise, unlike the Gondwanan horned meiolaniid radiation to the southwest. These large tortoise radiations in the Pacific may have contributed to the rapid dispersal of early mobile Neolithic hunters throughout southwest Melanesia and on to western Polynesia. Subsequent rapid extinctions of these terrestrial herbivorous megafauna are likely to have led to significant changes in ecosystems that help explain changes in current archaeological patterns from Post-Lapita contexts in the region.
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11
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Roos CI, Field JS, Dudgeon JV. Anthropogenic Burning, Agricultural Intensification, and Landscape Transformation in Post-Lapita Fiji. J ETHNOBIOL 2016. [DOI: 10.2993/0278-0771-36.3.535] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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12
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Reid MJC, Switzer WM, Schillaci MA, Ragonnet-Cronin M, Joanisse I, Caminiti K, Lowenberger CA, Galdikas BMF, Sandstrom PA, Brooks JI. Detailed phylogenetic analysis of primate T-lymphotropic virus type 1 (PTLV-1) sequences from orangutans (Pongo pygmaeus) reveals new insights into the evolutionary history of PTLV-1 in Asia. INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2016; 43:434-50. [PMID: 27245152 PMCID: PMC11332081 DOI: 10.1016/j.meegid.2016.05.036] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2015] [Revised: 04/28/2016] [Accepted: 05/26/2016] [Indexed: 12/13/2022]
Abstract
While human T-lymphotropic virus type 1 (HTLV-1) originates from ancient cross-species transmission of simian T-lymphotropic virus type 1 (STLV-1) from infected nonhuman primates, much debate exists on whether the first HTLV-1 occurred in Africa, or in Asia during early human evolution and migration. This topic is complicated by a lack of representative Asian STLV-1 to infer PTLV-1 evolutionary histories. In this study we obtained new STLV-1 LTR and tax sequences from a wild-born Bornean orangutan (Pongo pygmaeus) and performed detailed phylogenetic analyses using both maximum likelihood and Bayesian inference of available Asian PTLV-1 and African STLV-1 sequences. Phylogenies, divergence dates and nucleotide substitution rates were co-inferred and compared using six different molecular clock calibrations in a Bayesian framework, including both archaeological and/or nucleotide substitution rate calibrations. We then combined our molecular results with paleobiogeographical and ecological data to infer the most likely evolutionary history of PTLV-1. Based on the preferred models our analyses robustly inferred an Asian source for PTLV-1 with cross-species transmission of STLV-1 likely from a macaque (Macaca sp.) to an orangutan about 37.9-48.9kya, and to humans between 20.3-25.5kya. An orangutan diversification of STLV-1 commenced approximately 6.4-7.3kya. Our analyses also inferred that HTLV-1 was first introduced into Australia ~3.1-3.7kya, corresponding to both genetic and archaeological changes occurring in Australia at that time. Finally, HTLV-1 appears in Melanesia at ~2.3-2.7kya corresponding to the migration of the Lapita peoples into the region. Our results also provide an important future reference for calibrating information essential for PTLV evolutionary timescale inference. Longer sequence data, or full genomes from a greater representation of Asian primates, including gibbons, leaf monkeys, and Sumatran orangutans are needed to fully elucidate these evolutionary dates and relationships using the model criteria suggested herein.
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Affiliation(s)
- Michael J C Reid
- Department of Anthropology, University of Toronto Scarborough, 1265 Military Trail, Scarborough, Ontario M1C 1A4, Canada; Department of Anthropology, University of Toronto, 19 Russell Street, Toronto, Ontario M5S 2S2, Canada.
| | - William M Switzer
- Laboratory Branch, Division of HIV/AIDS Prevention, Center for Disease Control and Prevention, Atlanta, GA, USA 30329.
| | - Michael A Schillaci
- Department of Anthropology, University of Toronto Scarborough, 1265 Military Trail, Scarborough, Ontario M1C 1A4, Canada; Department of Anthropology, University of Toronto, 19 Russell Street, Toronto, Ontario M5S 2S2, Canada.
| | - Manon Ragonnet-Cronin
- Institute of Evolutionary Biology, University of Edinburgh, Ashworth Laboratories, West Mains Road, Edinburgh EH9 3JT, United Kingdom.
| | - Isabelle Joanisse
- National HIV & Retrovirology Laboratories, JC Wilt Infectious Diseases Research Centre, National Microbiology Laboratory, Public Health Agency of Canada, 745 Logan Avenue, Winnipeg, Manitoba, R3E 3L5, Canada
| | - Kyna Caminiti
- Centre for Biosecurity, Public Health Agency of Canada, 100 Colonnade Road, Ottawa, Ontario, Canada.
| | - Carl A Lowenberger
- Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada.
| | - Birute Mary F Galdikas
- Department of Archaeology, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, V5A 1S6, Canada; Orangutan Foundation International, 824 S. Wellesley Ave., Los Angeles, CA 90049, USA.
| | - Paul A Sandstrom
- National HIV & Retrovirology Laboratories, JC Wilt Infectious Diseases Research Centre, National Microbiology Laboratory, Public Health Agency of Canada, Ottawa, Ontario, Canada.
| | - James I Brooks
- National HIV & Retrovirology Laboratories, JC Wilt Infectious Diseases Research Centre, National Microbiology Laboratory, Public Health Agency of Canada, 745 Logan Avenue, Winnipeg, Manitoba, R3E 3L5, Canada.
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13
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Brown AA, Thomas T. The First New Zealanders? An Alternative Interpretation of Stable Isotope Data from Wairau Bar, New Zealand. PLoS One 2015; 10:e0135214. [PMID: 26509440 PMCID: PMC4624984 DOI: 10.1371/journal.pone.0135214] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2015] [Accepted: 06/28/2015] [Indexed: 11/23/2022] Open
Abstract
PLOS ONE Volume 8 includes an article “The First New Zealanders: Patterns of Diet and Mobility Revealed through Isotope Analysis”. The paper proposes that burial groups within the settlement phase site of Wairau Bar differ in terms of dietary stable isotopes and 87Sr/86Sr. The authors argue this difference is probably due to one group being a founding population while the other burials are later. Here we review the work of Kinaston et al. and present an alternative analysis and interpretation of the isotopic data. Treating the isotope data independently from cultural and biological factors we find that sex best explains dietary variation. Our reassessment of 87Sr/86Sr confirms the authors original finding of high mobility of early New Zealanders but suggests a larger range of individuals should be considered ‘non-local’ on current evidence.
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Affiliation(s)
- Andrew A. Brown
- Institute of Archaeology, University College London, London, United Kingdom
- * E-mail:
| | - Tim Thomas
- Department of Anthropology and Archaeology, University of Otago, Dunedin, New Zealand
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Critical Review of Brown and Thomas "The First New Zealanders? An Alternative Interpretation of the Stable Isotope Data from Wairau Bar". PLoS One 2015; 10:e0137616. [PMID: 26509709 PMCID: PMC4624792 DOI: 10.1371/journal.pone.0137616] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2015] [Accepted: 08/18/2015] [Indexed: 11/19/2022] Open
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Stantis C, Buckley HR, Kinaston RL, Nunn PD, Jaouen K, Richards MP. Isotopic evidence of human mobility and diet in a prehistoric/protohistoric Fijian coastal environment (c. 750-150 BP). AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2015; 159:478-95. [PMID: 26487418 DOI: 10.1002/ajpa.22884] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2015] [Revised: 10/01/2015] [Accepted: 10/05/2015] [Indexed: 11/12/2022]
Abstract
OBJECTIVES Bourewa, on the southwest coast of Viti Levu in Fiji, is a multi-period site that contained burials dated to the later Vuda Phase (750-150 BP), a period of climatic fluctuations that potentially impacted the availability of food resources. We aim to investigate diet and movement at this site during a time of possible ecological pressure and political change. MATERIALS AND METHODS We analyzed δ(13) C, δ(15) N, and (87) Sr/(86) Sr of these Vuda Phase individuals (n = 25) interred at the site. By analyzing dentin and bone, both childhood diet and the diet within the past few years of adults' lives were examined. RESULTS The paleodietary results suggested that adult diets consisted largely of low trophic level marine organisms. Dentin and bone isotopic values differed significantly: childhood diet involved consumption of more higher trophic level terrestrial foods. Most individuals displayed (87) Sr/(86) Sr ratios expected of people living along a marine coastline. However, a few individuals displayed (87) Sr/(86) Sr ratios and paleodietary values (δ(13) Cdentin , δ(15) Ndentin ) suggestive of living further inland or consuming a more terrestrial-based childhood diet. DISCUSSION The results are compared with past studies of sites from Fiji and nearby archipelagoes, placing our interpretations into a wider regional context. The Bourewa community appears to have consumed more low trophic level marine foods than any nearby site, possibly because terrestrial foods were more difficult to acquire. Interpreting the childhood diet is challenging due to the paucity of ethnohistoric literature on Fijian childhood; small meals outside of communal mealtimes or feeding children terrestrial animal protein as a means of cultural buffering are potential explanations.
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Affiliation(s)
- Christina Stantis
- Department of Anatomy, University of Otago, Dunedin, 9012, New Zealand
| | - Hallie R Buckley
- Department of Anatomy, University of Otago, Dunedin, 9012, New Zealand
| | | | - Patrick D Nunn
- Department of Anatomy, University of Otago, Dunedin, 9012, New Zealand
| | - Klervia Jaouen
- Department of Anatomy, University of Otago, Dunedin, 9012, New Zealand
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Stantis C, Kinaston RL, Richards MP, Davidson JM, Buckley HR. Assessing human diet and movement in the Tongan maritime chiefdom using isotopic analyses. PLoS One 2015; 10:e0123156. [PMID: 25822619 PMCID: PMC4378966 DOI: 10.1371/journal.pone.0123156] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2014] [Accepted: 02/25/2015] [Indexed: 11/30/2022] Open
Abstract
The rise of stratified societies fundamentally influences the interactions between status, movement, and food. Using isotopic analyses, we assess differences in diet and mobility of individuals excavated from two burial mounds located at the `Atele burial site on Tongatapu, the main island of the Kingdom of Tonga (c. 500 - 150 BP). The first burial mound (To-At-1) was classified by some archaeologists as a commoner's mound while the second burial mound (To-At-2) was possibly used for interment of the chiefly class. In this study, stable isotope analyses of diet (δ13C, δ15N, and δ34S; n = 41) are used to asses paleodiet and 87Sr/86Sr ratios (n = 30) are analyzed to investigate individual mobility to test whether sex and social status affected these aspects of life. Our results show significant differences in diet between burial mounds and sexes. Those interred in To-At-2 displayed lower δ13C values, indicating they ate relatively more terrestrial plants (likely starchy vegetable staples) compared with To-At-1 individuals. Females displayed significantly lower δ15N values compared with males within the entire assemblage. No differences in δ34S values were observed between sexes or burial mound but it is possible that sea spray or volcanism may have affected these values. One individual displayed the strontium isotopic composition representative of a nonlocal immigrant (outside 2SD of the mean). This suggests the hegemonic control over interisland travel, may have prevented long-term access to the island by non-Tongans exemplifying the political and spiritual importance of the island of Tongatapu in the maritime chiefdom.
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Affiliation(s)
- Christina Stantis
- Department of Anatomy, Division of Health Sciences, University of Otago, Dunedin, New Zealand
| | - Rebecca L. Kinaston
- Department of Anatomy, Division of Health Sciences, University of Otago, Dunedin, New Zealand
| | - Michael P. Richards
- Department of Anthropology, University of British Columbia, Vancouver, British Columbia, Canada
- Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | | | - Hallie R. Buckley
- Department of Anatomy, Division of Health Sciences, University of Otago, Dunedin, New Zealand
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Kinaston RL, Anson D, Petchey P, Walter R, Robb K, Buckley H. Lapita diet and subsistence strategies on Watom Island, Papua New Guinea: New stable isotope evidence from humans and animals. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2015; 157:30-41. [PMID: 25641394 DOI: 10.1002/ajpa.22685] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2014] [Accepted: 12/02/2014] [Indexed: 11/08/2022]
Abstract
Stable isotope ratios (δ(13)C and δ(15)N) were analyzed from the bone collagen of individuals (n = 8) from a Lapita burial ground (ca. 2800-2350 BP) on Watom Island, located off northeast New Britain in the Bismarck Archipelago. The aim of this study was to assess the diet and subsistence strategies of humans that lived during the later Lapita period in Near Oceania. To aid in the interpretation of the human diet we analyzed the stable isotope ratios of faunal material from the site (n = 27). We also aim to assess methods of animal husbandry at the site over time from an analysis of the stable isotope ratios (δ(13)C and δ(15)N) of pig bones (n = 22) from different temporal periods (Lapita, post-Lapita, and late prehistoric). The protein diet of the humans consisted of marine organisms from the inshore environment and some deep-water species, most likely marine turtle, in addition to higher trophic level terrestrial foods, likely pig and native animals (e.g., fruit bat, Cuscus and bandicoot). Although the sample sizes were small, females (n = 4) displayed more variable δ(13)C and δ(15)N values compared with males (n = 4), which may be associated with the movement of adult females to the island. The stable isotope analysis of the pig bones indicated that there were few differences between the diets of the pigs from the Lapita and post-Lapita layers, suggesting that the method of pig husbandry was similar between these two periods and was likely relatively free-range.
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Affiliation(s)
- Rebecca L Kinaston
- Department of Anatomy, Otago School of Medical Sciences, University of Otago, Dunedin, 9054, New Zealand
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Kinaston R, Bedford S, Richards M, Hawkins S, Gray A, Jaouen K, Valentin F, Buckley H. Diet and human mobility from the lapita to the early historic period on Uripiv island, Northeast Malakula, Vanuatu. PLoS One 2014; 9:e104071. [PMID: 25140807 PMCID: PMC4139273 DOI: 10.1371/journal.pone.0104071] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2014] [Accepted: 07/04/2014] [Indexed: 12/02/2022] Open
Abstract
Vanuatu was first settled ca. 3000 years ago by populations associated with the Lapita culture. Models of diet, subsistence practices, and human interaction for the Lapita and subsequent occupation periods have been developed mainly using the available archaeological and paleoenvironmental data. We test these models using stable (carbon, nitrogen, and sulfur) and radiogenic (strontium) isotopes to assess the diet and childhood residency of past communities that lived on the small (<1 km2) island of Uripiv, located off the northeast coast of Malakula, Vanuatu. The burials are from the initial Lapita occupation of the island (ca. 2800-2600 BP), the subsequent later Lapita (LL, ca. 2600-2500 BP) and post-Lapita (PL, ca. 2500-2000 BP) occupations, in addition to a late prehistoric/historic (LPH, ca. 300-150 BP) occupation period. The human stable isotope results indicate a progressively more terrestrial diet over time, which supports the archaeological model of an intensification of horticultural and arboricultural systems as local resources were depleted, populations grew, and cultural situations changed. Pig diets were similar and included marine foods during the Lapita and PL periods but were highly terrestrial during the LPH period. This dietary pattern indicates that there was little variation in animal husbandry methods during the first 800 years of prehistory; however, there was a subsequent change as animal diets became more controlled in the LPH period. After comparison with the local bioavailable 87Sr/86Sr baseline, all of the Lapita and LPH individuals appeared to be 'local', but three of the PL individuals were identified as "non-local." We suggest that these "non-locals" moved to the island after infancy or childhood from one of the larger islands, supporting the model of a high level of regional interaction during the post-Lapita period.
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Affiliation(s)
- Rebecca Kinaston
- Department of Anatomy, Otago School of Medical Sciences, University of Otago, Dunedin, New Zealand
| | - Stuart Bedford
- Department of Archaeology and Natural History, College of Asia and the Pacific, Australian National University, Canberra, ACT, Australia
| | - Michael Richards
- Department of Anthropology, University of British Columbia, Vancouver, Canada
- Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Stuart Hawkins
- School of Archaeology and Anthropology, The Australian National University, Canberra, ACT, Australia
| | - Andrew Gray
- Department of Preventive and Social Medicine, Otago School of Medical Sciences, University of Otago, Dunedin, New Zealand
| | - Klervia Jaouen
- Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | | | - Hallie Buckley
- Department of Anatomy, Otago School of Medical Sciences, University of Otago, Dunedin, New Zealand
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