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For: Wang Z, Sha Q, Zhang S. Joint Analysis of Multiple Traits Using "Optimal" Maximum Heritability Test. PLoS One 2016;11:e0150975. [PMID: 26950849 PMCID: PMC4780705 DOI: 10.1371/journal.pone.0150975] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2015] [Accepted: 02/22/2016] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Cao X, Zhang S, Sha Q. A novel method for multiple phenotype association studies based on genotype and phenotype network. PLoS Genet 2024;20:e1011245. [PMID: 38728360 PMCID: PMC11111089 DOI: 10.1371/journal.pgen.1011245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 05/22/2024] [Accepted: 03/29/2024] [Indexed: 05/12/2024]  Open
2
Buchardt AS, Zhou X, Ekstrøm CT. Joint regression analysis of multiple traits based on genetic relationships. BIOINFORMATICS ADVANCES 2024;4:vbad192. [PMID: 38264461 PMCID: PMC10805347 DOI: 10.1093/bioadv/vbad192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 12/11/2023] [Accepted: 12/31/2023] [Indexed: 01/25/2024]
3
Li X, Feng X, Liu X. Heritability estimation for a linear combination of phenotypes via ridge regression. Bioinformatics 2022;38:4687-4696. [PMID: 36053166 DOI: 10.1093/bioinformatics/btac587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 07/23/2022] [Indexed: 11/12/2022]  Open
4
Wang M, Zhang S, Sha Q. A computationally efficient clustering linear combination approach to jointly analyze multiple phenotypes for GWAS. PLoS One 2022;17:e0260911. [PMID: 35482827 PMCID: PMC9049312 DOI: 10.1371/journal.pone.0260911] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 04/13/2022] [Indexed: 11/18/2022]  Open
5
Fu L, Wang Y, Li T, Yang S, Hu YQ. A Novel Hierarchical Clustering Approach for Joint Analysis of Multiple Phenotypes Uncovers Obesity Variants Based on ARIC. Front Genet 2022;13:791920. [PMID: 35391794 PMCID: PMC8981031 DOI: 10.3389/fgene.2022.791920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Accepted: 01/27/2022] [Indexed: 12/02/2022]  Open
6
Julienne H, Laville V, McCaw ZR, He Z, Guillemot V, Lasry C, Ziyatdinov A, Nerin C, Vaysse A, Lechat P, Ménager H, Le Goff W, Dube MP, Kraft P, Ionita-Laza I, Vilhjálmsson BJ, Aschard H. Multitrait GWAS to connect disease variants and biological mechanisms. PLoS Genet 2021;17:e1009713. [PMID: 34460823 PMCID: PMC8437297 DOI: 10.1371/journal.pgen.1009713] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Revised: 09/13/2021] [Accepted: 07/12/2021] [Indexed: 12/30/2022]  Open
7
Fu L, Wang Y, Li T, Hu YQ. A Novel Approach Integrating Hierarchical Clustering and Weighted Combination for Association Study of Multiple Phenotypes and a Genetic Variant. Front Genet 2021;12:654804. [PMID: 34220938 PMCID: PMC8249926 DOI: 10.3389/fgene.2021.654804] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Accepted: 04/20/2021] [Indexed: 11/26/2022]  Open
8
Associating Multivariate Traits with Genetic Variants Using Collapsing and Kernel Methods with Pedigree- or Population-Based Studies. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2021;2021:8812282. [PMID: 33628328 PMCID: PMC7889379 DOI: 10.1155/2021/8812282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2020] [Revised: 01/02/2021] [Accepted: 01/08/2021] [Indexed: 11/18/2022]
9
Julienne H, Lechat P, Guillemot V, Lasry C, Yao C, Araud R, Laville V, Vilhjalmsson B, Ménager H, Aschard H. JASS: command line and web interface for the joint analysis of GWAS results. NAR Genom Bioinform 2020;2:lqaa003. [PMID: 32002517 PMCID: PMC6978790 DOI: 10.1093/nargab/lqaa003] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Revised: 12/03/2019] [Accepted: 01/09/2020] [Indexed: 12/11/2022]  Open
10
Sha Q, Wang Z, Zhang X, Zhang S. A clustering linear combination approach to jointly analyze multiple phenotypes for GWAS. Bioinformatics 2020;35:1373-1379. [PMID: 30239574 DOI: 10.1093/bioinformatics/bty810] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2017] [Revised: 08/29/2018] [Accepted: 09/18/2018] [Indexed: 12/16/2022]  Open
11
Li X, Zhang S, Sha Q. Joint analysis of multiple phenotypes using a clustering linear combination method based on hierarchical clustering. Genet Epidemiol 2020;44:67-78. [PMID: 31541490 PMCID: PMC7480017 DOI: 10.1002/gepi.22263] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2019] [Revised: 07/19/2019] [Accepted: 08/28/2019] [Indexed: 12/24/2022]
12
Joint Analysis of Multiple Phenotypes in Association Studies based on Cross-Validation Prediction Error. Sci Rep 2019;9:1073. [PMID: 30705317 PMCID: PMC6355816 DOI: 10.1038/s41598-018-37538-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2018] [Accepted: 11/19/2018] [Indexed: 01/28/2023]  Open
13
Wang Z, Sha Q, Fang S, Zhang K, Zhang S. Testing an optimally weighted combination of common and/or rare variants with multiple traits. PLoS One 2018;13:e0201186. [PMID: 30048520 PMCID: PMC6062080 DOI: 10.1371/journal.pone.0201186] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2018] [Accepted: 07/10/2018] [Indexed: 12/25/2022]  Open
14
Genetics of pleiotropic effects of dexamethasone. Pharmacogenet Genomics 2018. [PMID: 28628558 DOI: 10.1097/fpc.0000000000000293] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
15
Liang X, Sha Q, Rho Y, Zhang S. A hierarchical clustering method for dimension reduction in joint analysis of multiple phenotypes. Genet Epidemiol 2018;42:344-353. [PMID: 29682782 DOI: 10.1002/gepi.22124] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2017] [Revised: 02/01/2018] [Accepted: 02/19/2018] [Indexed: 12/25/2022]
16
Zhu H, Zhang S, Sha Q. A novel method to test associations between a weighted combination of phenotypes and genetic variants. PLoS One 2018;13:e0190788. [PMID: 29329304 PMCID: PMC5766098 DOI: 10.1371/journal.pone.0190788] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2017] [Accepted: 12/20/2017] [Indexed: 11/18/2022]  Open
17
Deng Y, Pan W. Testing Genetic Pleiotropy with GWAS Summary Statistics for Marginal and Conditional Analyses. Genetics 2017;207:1285-1299. [PMID: 28971959 PMCID: PMC5714448 DOI: 10.1534/genetics.117.300347] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2017] [Accepted: 09/29/2017] [Indexed: 11/18/2022]  Open
18
Deng Y, Pan W. Conditional analysis of multiple quantitative traits based on marginal GWAS summary statistics. Genet Epidemiol 2017;41:427-436. [PMID: 28464407 PMCID: PMC5536980 DOI: 10.1002/gepi.22046] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2016] [Revised: 01/09/2017] [Accepted: 02/04/2017] [Indexed: 12/22/2022]
19
Kim J, Pan W. Adaptive testing for multiple traits in a proportional odds model with applications to detect SNP-brain network associations. Genet Epidemiol 2017;41:259-277. [PMID: 28191669 DOI: 10.1002/gepi.22033] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2016] [Revised: 10/07/2016] [Accepted: 10/31/2016] [Indexed: 12/15/2022]
20
Kwak IY, Pan W. Gene- and pathway-based association tests for multiple traits with GWAS summary statistics. Bioinformatics 2017;33:64-71. [PMID: 27592708 PMCID: PMC5198520 DOI: 10.1093/bioinformatics/btw577] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2016] [Revised: 08/08/2016] [Accepted: 08/29/2016] [Indexed: 11/15/2022]  Open
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