1
|
Mateus-Anzola J, Gaytan-Cruz L, Espinosa-García AC, Martínez-López B, Ojeda-Flores R. Risk for Waterborne Transmission and Environmental Persistence of Avian Influenza Virus in a Wildlife/Domestic Interface in Mexico. FOOD AND ENVIRONMENTAL VIROLOGY 2024; 16:458-469. [PMID: 39033470 PMCID: PMC11525396 DOI: 10.1007/s12560-024-09608-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 06/30/2024] [Indexed: 07/23/2024]
Abstract
Aquatic habitats provide a bridge for influenza transmission among wild and domestic species. However, water sources pose highly variable physicochemical and ecological characteristics that affect avian influenza virus (AIV) stability. Therefore, the risk of survival or transmissibility of AIV in the environment is quite variable and has been understudied. In this study, we determine the risk of waterborne transmission and environmental persistence of AIV in a wild/domestic bird interface in the Central Mexico plateau (North America) during the winter season using a multi-criteria decision analysis (MCDA). A total of 13 eco-epidemiological factors were selected from public-access databases to develop the risk assessment. The MCDA showed that the Atarasquillo wetland presents a higher persistence risk in January. Likewise, most of the backyard poultry farms at this wild-domestic interface present a high persistence risk (50%). Our results suggest that drinking water may represent a more enabling environment for AIV persistence in contrast with wastewater. Moreover, almost all backyard poultry farms evidence a moderate or high risk of waterborne transmission especially farms close to water bodies. The wildlife/domestic bird interface on the Atarasquillo wetland holds eco-epidemiological factors such as the presence of farms in flood-prone areas, the poultry access to outdoor water, and the use of drinking-water troughs among multiple animal species that may enhance waterborne transmission of AIV. These findings highlight the relevance of understanding the influence of multiple factors on AIV ecology for early intervention and long-term control strategies.
Collapse
Affiliation(s)
- Jessica Mateus-Anzola
- Laboratorio de Ecología de Enfermedades y Una Salud, Departamento de Etología, Fauna Silvestre y Animales de Laboratorio, Facultad de Medicina Veterinaria y Zootecnia, Universidad Nacional Autónoma de México, Av. Universidad 3000, Edificio A, Delegación Coyoacán, Col. Ciudad Universitaria, 04510, Mexico City, Mexico
| | - Liliana Gaytan-Cruz
- Laboratorio de Ecología de Enfermedades y Una Salud, Departamento de Etología, Fauna Silvestre y Animales de Laboratorio, Facultad de Medicina Veterinaria y Zootecnia, Universidad Nacional Autónoma de México, Av. Universidad 3000, Edificio A, Delegación Coyoacán, Col. Ciudad Universitaria, 04510, Mexico City, Mexico
| | - Ana Cecilia Espinosa-García
- Laboratorio Nacional de Ciencias de La Sostenibilidad, Instituto de Ecología, Universidad Nacional Autónoma de México, 04510, Mexico City, Mexico
| | - Beatriz Martínez-López
- Center for Animal Disease Modeling and Surveillance, Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California-Davis, Davis, CA, 95616, USA
| | - Rafael Ojeda-Flores
- Laboratorio de Ecología de Enfermedades y Una Salud, Departamento de Etología, Fauna Silvestre y Animales de Laboratorio, Facultad de Medicina Veterinaria y Zootecnia, Universidad Nacional Autónoma de México, Av. Universidad 3000, Edificio A, Delegación Coyoacán, Col. Ciudad Universitaria, 04510, Mexico City, Mexico.
| |
Collapse
|
2
|
Kenmoe S, Takuissu GR, Ebogo-Belobo JT, Kengne-Ndé C, Mbaga DS, Bowo-Ngandji A, Ondigui Ndzie JL, Kenfack-Momo R, Tchatchouang S, Lontuo Fogang R, Zeuko'o Menkem E, Kame-Ngasse GI, Magoudjou-Pekam JN, Puzelli S, Lucentini L, Veneri C, Mancini P, Bonanno Ferraro G, Iaconelli M, Del Giudice C, Brandtner D, Suffredini E, La Rosa G. A systematic review of influenza virus in water environments across human, poultry, and wild bird habitats. WATER RESEARCH X 2024; 22:100210. [PMID: 38298332 PMCID: PMC10825513 DOI: 10.1016/j.wroa.2023.100210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 12/11/2023] [Accepted: 12/12/2023] [Indexed: 02/02/2024]
Abstract
Influenza, a highly contagious acute respiratory disease, remains a major global health concern. This study aimed to comprehensively assess the prevalence of influenza virus in different aquatic environments. Using 43 articles from four databases, we thoroughly examined water matrices from wastewater treatment plants (WTPs) and other human environments, as well as poultry habitats and areas frequented by migratory wild birds. In WTP influents (10 studies), positivity rates for influenza A ranged from 0.0 % to 97.6 %. For influenza B (8 studies), most studies reported no positivity, except for three studies reporting detection in 0.8 %, 5.6 %, and 46.9 % of samples. Within poultry habitats (13 studies), the prevalence of influenza A ranged from 4.3 % to 76.4 %, while in environments frequented by migratory wild birds (11 studies), it ranged from 0.4 % to 69.8 %. Geographically, the studies were distributed as follows: 39.5 % from the Americas, 18.6 % from Europe, 2.3 % from South-East Asia and 39.5 % from the Western Pacific. Several influenza A subtypes were found in water matrices, including avian influenza (H3N6, H3N8, H4N1, H4N2, H4N6, H4N8, H5N1, H5N8, H6N2, H6N6, H7N9, H0N8, and H11N9) and seasonal human influenza (H1N1 and H3N2). The existing literature indicates a crucial requirement for more extensive future research on this topic. Specifically, it emphasizes the need for method harmonization and delves into areas deserving of in-depth research, such as water matrices pertaining to pig farming and prevalence studies in low-income countries.
Collapse
Affiliation(s)
- S Kenmoe
- Department of Microbiology and Parasitology, University of Buea, Buea, Cameroon
| | - GR Takuissu
- Centre for Food, Food Security and Nutrition Research, Institute of Medical Research and Medicinal Plants Studies, Yaounde, Cameroon
| | - JT Ebogo-Belobo
- Medical Research Centre, Institute of Medical Research and Medicinal Plants Studies, Yaounde, Cameroon
| | - C Kengne-Ndé
- Epidemiological Surveillance, Evaluation and Research Unit, National AIDS Control Committee, Douala, Cameroon
| | - DS Mbaga
- Department of Microbiology, The University of Yaounde I, Yaounde, Cameroon
| | - A Bowo-Ngandji
- Department of Microbiology, The University of Yaounde I, Yaounde, Cameroon
| | - JL Ondigui Ndzie
- Department of Microbiology, The University of Yaounde I, Yaounde, Cameroon
| | - R Kenfack-Momo
- Department of Biochemistry, The University of Yaounde I, Yaounde, Cameroon
| | - S Tchatchouang
- Scientific Direction, Centre Pasteur du Cameroun, Yaounde, Cameroon
| | - R Lontuo Fogang
- Department of Animal Biology, University of Dschang, Dschang, Cameroon
| | - E Zeuko'o Menkem
- Department of Biomedical Sciences, University of Buea, Buea, Cameroon
| | - GI Kame-Ngasse
- Medical Research Centre, Institute of Medical Research and Medicinal Plants Studies, Yaounde, Cameroon
| | - JN Magoudjou-Pekam
- Department of Biochemistry, The University of Yaounde I, Yaounde, Cameroon
| | - S Puzelli
- Department of Infectious Disease, Istituto Superiore di Sanità, Rome, Italy
| | - L Lucentini
- National Center for Water Safety (CeNSiA), Istituto Superiore di Sanità, Rome, Italy
| | - C Veneri
- National Center for Water Safety (CeNSiA), Istituto Superiore di Sanità, Rome, Italy
| | - P Mancini
- National Center for Water Safety (CeNSiA), Istituto Superiore di Sanità, Rome, Italy
| | - G Bonanno Ferraro
- National Center for Water Safety (CeNSiA), Istituto Superiore di Sanità, Rome, Italy
| | - M Iaconelli
- National Center for Water Safety (CeNSiA), Istituto Superiore di Sanità, Rome, Italy
| | - C Del Giudice
- National Center for Water Safety (CeNSiA), Istituto Superiore di Sanità, Rome, Italy
| | - D Brandtner
- Department of Infectious Disease, Istituto Superiore di Sanità, Rome, Italy
| | - E Suffredini
- Department of Food Safety, Nutrition and Veterinary public health, Istituto Superiore di Sanità, Rome, Italy
| | - G La Rosa
- National Center for Water Safety (CeNSiA), Istituto Superiore di Sanità, Rome, Italy
| |
Collapse
|
3
|
Ahrens AK, Selinka HC, Mettenleiter TC, Beer M, Harder TC. Exploring surface water as a transmission medium of avian influenza viruses - systematic infection studies in mallards. Emerg Microbes Infect 2022; 11:1250-1261. [PMID: 35473641 PMCID: PMC9090351 DOI: 10.1080/22221751.2022.2065937] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Mallards (Anas platyrhynchos) are an abundant anseriform migratory wild bird species worldwide and an important reservoir for the maintenance of low pathogenicity (LP) avian influenza viruses (AIV). They have also been implicated in the spread of high pathogenicity (HP) AIV after spill-over events from HPAIV-infected poultry. The spread of HPAIV within wild water bird populations may lead to viral contamination of natural habitats. The role of small shallow water bodies as a transmission medium of AIV among mallards is investigated here in three experimental settings. (i) Delayed onset but rapid progression of infection seeded by two mallards inoculated with either LP or HP AIV to each eight sentinel mallards was observed in groups with access to a small 100 L water pool. In contrast, groups with a bell drinker as the sole source of drinking water showed a rapid onset but lengthened course of infection. (ii) HPAIV infection also set off when virus was dispersed in the water pool; titres as low as 102 TCID50 L-1 (translating to 0.1 TCID50 mL-1) proved to be sufficient. (iii) Substantial loads of viral RNA (and infectivity) were also found on the surface of the birds' breast plumage. "Unloading" of virus infectivity from contaminated plumage into water bodies may be an efficient mechanism of virus spread by infected mallards. However, transposure of HPAIV via the plumage of an uninfected mallard failed. We conclude, surface water in small shallow water bodies may play an important role as a mediator of AIV infection of aquatic wild birds.
Collapse
Affiliation(s)
- Ann Kathrin Ahrens
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institute, Isle of Riems, Germany
| | | | | | - Martin Beer
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institute, Isle of Riems, Germany
| | - Timm C Harder
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institute, Isle of Riems, Germany
| |
Collapse
|
4
|
Le Gall-Ladevèze C, Guinat C, Fievet P, Vollot B, Guérin JL, Cappelle J, Le Loc'h G. Quantification and characterisation of commensal wild birds and their interactions with domestic ducks on a free-range farm in southwest France. Sci Rep 2022; 12:9764. [PMID: 35697735 PMCID: PMC9192735 DOI: 10.1038/s41598-022-13846-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Accepted: 05/30/2022] [Indexed: 11/09/2022] Open
Abstract
The role of commensal birds in the epidemiology of pathogens in poultry farms remains unclear. Our study aimed to identify potential key species for interactions with domestic ducks on one free-range duck farm in southwest France. Methods combined direct individual observations on duck outdoor foraging areas, network analysis, and general linear mixed models of abundances. Results showed a wide diversity of wild bird species visiting foraging areas, heavily dominated in frequency by White wagtails (Motacilla alba) and Sparrows (Passer domesticus and Passer montanus). These also were the only species seen entering duck premises or perching on drinkers in the presence of ducks. Moreover, White wagtails were the species most frequently observed on the ground and in close proximity to ducks. Network analysis suggested the role of White wagtails and Sparrows in linking ducks to other wild birds on the farm. The abundance of White wagtails was positively associated with open vegetation, with the presence of ducks and particularly in the afternoon, while the abundance of Sparrows was positively associated only with the fall-winter season. By precisely characterising interactions, the study was able to identify few wild bird species which should be prioritized in infectious investigations at the interface with poultry.
Collapse
Affiliation(s)
| | - Claire Guinat
- Department of Biosystems Science and Engineering, ETHZürich, Mattenstrasse, Basel, Switzerland
- SIB, Lausanne, Switzerland
| | | | | | | | - Julien Cappelle
- ASTRE, CIRAD, INRAE, Université de Montpellier, Montpellier, France
- UMR ASTRE, CIRAD, 34398, Montpellier, France
| | | |
Collapse
|
5
|
Hicks JT, Edwards K, Qiu X, Kim DK, Hixson JE, Krauss S, Webby RJ, Webster RG, Bahl J. Host diversity and behavior determine patterns of interspecies transmission and geographic diffusion of avian influenza A subtypes among North American wild reservoir species. PLoS Pathog 2022; 18:e1009973. [PMID: 35417497 PMCID: PMC9037922 DOI: 10.1371/journal.ppat.1009973] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 04/25/2022] [Accepted: 03/07/2022] [Indexed: 11/19/2022] Open
Abstract
Wild birds can carry avian influenza viruses (AIV), including those with pandemic or panzootic potential, long distances. Even though AIV has a broad host range, few studies account for host diversity when estimating AIV spread. We analyzed AIV genomic sequences from North American wild birds, including 303 newly sequenced isolates, to estimate interspecies and geographic viral transition patterns among multiple co-circulating subtypes. Our results show high transition rates within Anseriformes and Charadriiformes, but limited transitions between these orders. Patterns of transition between species were positively associated with breeding habitat range overlap, and negatively associated with host genetic distance. Distance between regions (negative correlation) and summer temperature at origin (positive correlation) were strong predictors of transition between locations. Taken together, this study demonstrates that host diversity and ecology can determine evolutionary processes that underlie AIV natural history and spread. Understanding these processes can provide important insights for effective control of AIV.
Collapse
Affiliation(s)
- Joseph T. Hicks
- Center for Ecology of Infectious Diseases, Department of Infectious Diseases, College of Veterinary Medicine, Department of Epidemiology and Biostatistics, College of Public Health, Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America
| | - Kimberly Edwards
- Department of Infectious Disease, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America
| | - Xueting Qiu
- Center for Ecology of Infectious Diseases, Department of Infectious Diseases, College of Veterinary Medicine, Department of Epidemiology and Biostatistics, College of Public Health, Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America
| | - Do-Kyun Kim
- University of Texas Health Science Center at Houston School of Public Health, Houston, Texas, United States of America
| | - James E. Hixson
- University of Texas Health Science Center at Houston School of Public Health, Houston, Texas, United States of America
| | - Scott Krauss
- Department of Infectious Disease, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America
| | - Richard J. Webby
- Department of Infectious Disease, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America
| | - Robert G. Webster
- Department of Infectious Disease, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America
| | - Justin Bahl
- Center for Ecology of Infectious Diseases, Department of Infectious Diseases, College of Veterinary Medicine, Department of Epidemiology and Biostatistics, College of Public Health, Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America
| |
Collapse
|
6
|
Blanchet CC, Arzel C, Davranche A, Kahilainen KK, Secondi J, Taipale S, Lindberg H, Loehr J, Manninen-Johansen S, Sundell J, Maanan M, Nummi P. Ecology and extent of freshwater browning - What we know and what should be studied next in the context of global change. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 812:152420. [PMID: 34953836 DOI: 10.1016/j.scitotenv.2021.152420] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Revised: 12/10/2021] [Accepted: 12/11/2021] [Indexed: 06/14/2023]
Abstract
Water browning or brownification refers to increasing water color, often related to increasing dissolved organic matter (DOM) and carbon (DOC) content in freshwaters. Browning has been recognized as a significant physicochemical phenomenon altering boreal lakes, but our understanding of its ecological consequences in different freshwater habitats and regions is limited. Here, we review the consequences of browning on different freshwater habitats, food webs and aquatic-terrestrial habitat coupling. We examine global trends of browning and DOM/DOC, and the use of remote sensing as a tool to investigate browning from local to global scales. Studies have focused on lakes and rivers while seldom addressing effects at the catchment scale. Other freshwater habitats such as small and temporary waterbodies have been overlooked, making the study of the entire network of the catchment incomplete. While past research investigated the response of primary producers, aquatic invertebrates and fishes, the effects of browning on macrophytes, invasive species, and food webs have been understudied. Research has focused on freshwater habitats without considering the fluxes between aquatic and terrestrial habitats. We highlight the importance of understanding how the changes in one habitat may cascade to another. Browning is a broader phenomenon than the heretofore concentration on the boreal region. Overall, we propose that future studies improve the ecological understanding of browning through the following research actions: 1) increasing our knowledge of ecological processes of browning in other wetland types than lakes and rivers, 2) assessing the impact of browning on aquatic food webs at multiple scales, 3) examining the effects of browning on aquatic-terrestrial habitat coupling, 4) expanding our knowledge of browning from the local to global scale, and 5) using remote sensing to examine browning and its ecological consequences.
Collapse
Affiliation(s)
- Clarisse C Blanchet
- Department of Biology, FI-20014, University of Turku, Finland; Department of Forest Sciences, P.O. Box 27, University of Helsinki, FI-00014 Helsinki, Finland.
| | - Céline Arzel
- Department of Biology, FI-20014, University of Turku, Finland
| | - Aurélie Davranche
- CNRS UMR 6554 LETG, University of Angers, 2 Boulevard Lavoisier, FR-49000 Angers, France
| | - Kimmo K Kahilainen
- University of Helsinki, Lammi Biological Station, Pääjärventie 320, FI-16900 Lammi, Finland
| | - Jean Secondi
- University of Lyon, Université Claude Bernard Lyon 1, CNRS, ENTPE, UMR 5023 LEHNA, F-69622, Villeurbanne, France; Faculty of Sciences, University of Angers, F-49000 Angers, France
| | - Sami Taipale
- Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - Henrik Lindberg
- HAMK University of Applied Sciences, Forestry Programme, Saarelantie 1, FI-16970 Evo, Finland
| | - John Loehr
- University of Helsinki, Lammi Biological Station, Pääjärventie 320, FI-16900 Lammi, Finland
| | | | - Janne Sundell
- University of Helsinki, Lammi Biological Station, Pääjärventie 320, FI-16900 Lammi, Finland
| | - Mohamed Maanan
- UMR CNRS 6554, University of Nantes, F-44000 Nantes, France
| | - Petri Nummi
- Department of Forest Sciences, P.O. Box 27, University of Helsinki, FI-00014 Helsinki, Finland
| |
Collapse
|
7
|
Ramey AM, Reeves AB, Lagassé BJ, Patil V, Hubbard LE, Kolpin DW, McCleskey RB, Repert DA, Stallknecht DE, Poulson RL. Evidence for interannual persistence of infectious influenza A viruses in Alaska wetlands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 803:150078. [PMID: 34525758 PMCID: PMC9277558 DOI: 10.1016/j.scitotenv.2021.150078] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 08/26/2021] [Accepted: 08/28/2021] [Indexed: 06/13/2023]
Abstract
Influenza A viruses (IAVs) deposited by wild birds into the environment may lead to sporadic mortality events and economically costly outbreaks among domestic birds. There is a paucity of information, however, regarding the persistence of infectious IAVs within the environment following deposition. In this investigation, we assessed the persistence of 12 IAVs that were present in cloacal and/or oropharyngeal swabs of naturally infected ducks. Infectivity of these IAVs was monitored over approximately one year with each virus tested in five water types: (1) distilled water held in the lab at 4 °C and (2-5) filtered surface water from each of four Alaska sites and maintained in the field at ambient temperature. By evaluating infectivity of IAVs in ovo following sample retrieval at four successive time points, we observed declines in IAV infectivity through time. Many viruses persisted for extended periods, as evidenced by ≥25% of IAVs remaining infectious in replicate samples for each treatment type through three sampling time points (144-155 days post-sample collection) and two viruses remaining viable in a single replicate sample each when tested upon collection at a fourth time point (361-377 days post-sample collection). The estimated probability of persistence of infectious IAVs in all five water types was estimated to be between 0.25 and 0.75 during days 50-200 post-sample collection as inferred through Kaplan-Meier survival analysis. Our results provide evidence that IAVs may remain infectious for extended periods, up to or even exceeding one year, when maintained in surface waters under ambient temperatures. Therefore, wetlands may represent an important medium in which infectious IAVs may reside outside of a biotic reservoir.
Collapse
Affiliation(s)
- Andrew M Ramey
- U. S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA.
| | - Andrew B Reeves
- U. S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA.
| | - Benjamin J Lagassé
- U. S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA; Department of Biology and Wildlife, University of Alaska Fairbanks, P.O. Box 756100, Fairbanks, AK 99775, USA
| | - Vijay Patil
- U. S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA.
| | - Laura E Hubbard
- U. S. Geological Survey, Upper Midwest Water Science Center, 8505 Research Way, Middleton, WI 53562, USA.
| | - Dana W Kolpin
- U. S. Geological Survey, Central Midwest Water Science Center, 400 S. Clinton Street, Iowa City, IA 52244, USA.
| | - R Blaine McCleskey
- U. S. Geological Survey, Water Resources Mission Area, 3215 Marine Street, Building 6, Boulder, CO 80309, USA.
| | - Deborah A Repert
- U. S. Geological Survey, Water Resources Mission Area, 3215 Marine Street, Building 6, Boulder, CO 80309, USA.
| | - David E Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA.
| | - Rebecca L Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA.
| |
Collapse
|
8
|
Avian Influenza in Wild Birds and Poultry: Dissemination Pathways, Monitoring Methods, and Virus Ecology. Pathogens 2021; 10:pathogens10050630. [PMID: 34065291 PMCID: PMC8161317 DOI: 10.3390/pathogens10050630] [Citation(s) in RCA: 62] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 05/13/2021] [Accepted: 05/14/2021] [Indexed: 12/21/2022] Open
Abstract
Avian influenza is one of the largest known threats to domestic poultry. Influenza outbreaks on poultry farms typically lead to the complete slaughter of the entire domestic bird population, causing severe economic losses worldwide. Moreover, there are highly pathogenic avian influenza (HPAI) strains that are able to infect the swine or human population in addition to their primary avian host and, as such, have the potential of being a global zoonotic and pandemic threat. Migratory birds, especially waterfowl, are a natural reservoir of the avian influenza virus; they carry and exchange different virus strains along their migration routes, leading to antigenic drift and antigenic shift, which results in the emergence of novel HPAI viruses. This requires monitoring over time and in different locations to allow for the upkeep of relevant knowledge on avian influenza virus evolution and the prevention of novel epizootic and epidemic outbreaks. In this review, we assess the role of migratory birds in the spread and introduction of influenza strains on a global level, based on recent data. Our analysis sheds light on the details of viral dissemination linked to avian migration, the viral exchange between migratory waterfowl and domestic poultry, virus ecology in general, and viral evolution as a process tightly linked to bird migration. We also provide insight into methods used to detect and quantify avian influenza in the wild. This review may be beneficial for the influenza research community and may pave the way to novel strategies of avian influenza and HPAI zoonosis outbreak monitoring and prevention.
Collapse
|
9
|
Recyclable Iron Oxide Loaded Poly (Methyl Methacrylate) Core/Polyethyleneimine Shell Nanoparticle as Antimicrobial Nanomaterial for Zoonotic Pathogen Controls. J CLUST SCI 2021. [DOI: 10.1007/s10876-021-01990-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
10
|
Ramey AM, Reeves AB, Drexler JZ, Ackerman JT, De La Cruz S, Lang AS, Leyson C, Link P, Prosser DJ, Robertson GJ, Wight J, Youk S, Spackman E, Pantin-Jackwood M, Poulson RL, Stallknecht DE. Influenza A viruses remain infectious for more than seven months in northern wetlands of North America. Proc Biol Sci 2020; 287:20201680. [PMID: 32901574 PMCID: PMC7542776 DOI: 10.1098/rspb.2020.1680] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Accepted: 08/11/2020] [Indexed: 01/07/2023] Open
Abstract
In this investigation, we used a combination of field- and laboratory-based approaches to assess if influenza A viruses (IAVs) shed by ducks could remain viable for extended periods in surface water within three wetland complexes of North America. In a field experiment, replicate filtered surface water samples inoculated with duck swabs were tested for IAVs upon collection and again after an overwintering period of approximately 6-7 months. Numerous IAVs were molecularly detected and isolated from these samples, including replicates maintained at wetland field sites in Alaska and Minnesota for 181-229 days. In a parallel laboratory experiment, we attempted to culture IAVs from filtered surface water samples inoculated with duck swabs from Minnesota each month during September 2018-April 2019 and found monthly declines in viral viability. In an experimental challenge study, we found that IAVs maintained in filtered surface water within wetlands of Alaska and Minnesota for 214 and 226 days, respectively, were infectious in a mallard model. Collectively, our results support surface waters of northern wetlands as a biologically important medium in which IAVs may be both transmitted and maintained, potentially serving as an environmental reservoir for infectious IAVs during the overwintering period of migratory birds.
Collapse
Affiliation(s)
- Andrew M. Ramey
- US Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA
| | - Andrew B. Reeves
- US Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA
| | - Judith Z. Drexler
- US Geological Survey, California Water Science Center, 6000 J Street, Placer Hall, Sacramento, CA 95819, USA
| | - Joshua T. Ackerman
- US Geological Survey, Western Ecological Research Center, Dixon Field Station, 800 Business Park Drive, Suite D, Dixon, CA 95620, USA
| | - Susan De La Cruz
- US Geological Survey, Western Ecological Research Center, San Francisco Bay Estuary Field Station, 350 N Akron Road, Building 19, Moffett Field, CA 94035, USA
| | - Andrew S. Lang
- Department of Biology, Memorial University of Newfoundland, 232 Elizabeth Avenue, St John's, Newfoundland, A1B 3X9, Canada
| | - Christina Leyson
- Exotic and Emerging Avian Viral Diseases Research Unit, US National Poultry Research Center, US Department of Agriculture, Agricultural Research Service, Athens, Georgia, USA
| | - Paul Link
- Louisiana Department of Wildlife and Fisheries, 2000 Quail Drive, Room 436, Baton Rouge, LA 70808, USA
| | - Diann J. Prosser
- US Geological Survey Patuxent Wildlife Research Center, 12100 Beech Forest Road, Laurel, MD 20708, USA
| | - Gregory J. Robertson
- Environment and Climate Change Canada, 6 Bruce Street, Mount Pearl, Newfoundland, A1N 4T3, Canada
| | - Jordan Wight
- Department of Biology, Memorial University of Newfoundland, 232 Elizabeth Avenue, St John's, Newfoundland, A1B 3X9, Canada
| | - Sungsu Youk
- Exotic and Emerging Avian Viral Diseases Research Unit, US National Poultry Research Center, US Department of Agriculture, Agricultural Research Service, Athens, Georgia, USA
| | - Erica Spackman
- Exotic and Emerging Avian Viral Diseases Research Unit, US National Poultry Research Center, US Department of Agriculture, Agricultural Research Service, Athens, Georgia, USA
| | - Mary Pantin-Jackwood
- Exotic and Emerging Avian Viral Diseases Research Unit, US National Poultry Research Center, US Department of Agriculture, Agricultural Research Service, Athens, Georgia, USA
| | - Rebecca L. Poulson
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA
| | - David E. Stallknecht
- Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA
| |
Collapse
|
11
|
Using geospatial methods to measure the risk of environmental persistence of avian influenza virus in South Carolina. Spat Spatiotemporal Epidemiol 2020; 34:100342. [PMID: 32807394 DOI: 10.1016/j.sste.2020.100342] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/26/2019] [Revised: 03/07/2020] [Accepted: 03/20/2020] [Indexed: 11/24/2022]
Abstract
Avian influenza (AIV) is a highly contagious virus that can infect both wild birds and domestic poultry. This study aimed to define areas within the state of South Carolina (SC) at heightened risk for environmental persistence of AIV using geospatial methods. Environmental factors known to influence AIV survival were identified through the published literature and using a multi-criteria decision analysis with GIS was performed. Risk was defined using five categories following the World Organization for Animal Health Risk Assessment Guidelines. Less than 1% of 1km grid cells in SC showed a high risk of AIV persistence. Approximately 2% - 17% of counties with high or very high environmental risk also had medium to very high numbers of commercial poultry operations. Results can be used to improve surveillance activities and to inform biosecurity practices and emergency preparedness efforts.
Collapse
|
12
|
Germeraad EA, Elbers ARW, de Bruijn ND, Heutink R, van Voorst W, Hakze-van der Honing R, Bergervoet SA, Engelsma MY, van der Poel WHM, Beerens N. Detection of Low Pathogenic Avian Influenza Virus Subtype H10N7 in Poultry and Environmental Water Samples During a Clinical Outbreak in Commercial Free-Range Layers, Netherlands 2017. Front Vet Sci 2020; 7:237. [PMID: 32478107 PMCID: PMC7232570 DOI: 10.3389/fvets.2020.00237] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Accepted: 04/07/2020] [Indexed: 11/23/2022] Open
Abstract
Wild birds are the natural reservoir of the avian influenza virus (AIV) and may transmit AIV to poultry via direct contact or indirectly through the environment. In the Netherlands, a clinically suspected free-range layer flock was reported to the veterinary authorities by the farmer. Increased mortality, a decreased feed intake, and a drop in egg production were observed. Subsequently, an infection with low pathogenic avian influenza virus was detected. This study describes the diagnostic procedures used for detection and subtyping of the virus. In addition to routine diagnostics, the potential of two different environmental diagnostic methods was investigated for detecting AIV in surface water. AIV was first detected using rRT-PCR and isolated from tracheal and cloacal swabs collected from the hens. The virus was subtyped as H10N7. Antibodies against the virus were detected in 28 of the 31 sera tested. An intravenous pathogenicity index (IVPI) experiment was performed, but no clinical signs (IVPI = 0) were observed. Post-mortem examination and histology confirmed the AIV infection. Multiple water samples were collected longitudinally from the free-range area and waterway near the farm. Both environmental diagnostic methods allowed the detection of the H10N7 virus, demonstrating the potential of these methods in detection of AIV. The described methods could be a useful additional procedure for AIV surveillance in water-rich areas with large concentrations of wild birds or in areas around poultry farms. In addition, these methods could be used as a tool to test if the environment or free-range area is virus-free again, at the end of an AIV epidemic.
Collapse
Affiliation(s)
- Evelien A. Germeraad
- Wageningen Bioveterinary Research, Department of Virology, Lelystad, Netherlands
| | - Armin R. W. Elbers
- Wageningen Bioveterinary Research, Department of Bacteriology and Epidemiology, Lelystad, Netherlands
| | | | - Rene Heutink
- Wageningen Bioveterinary Research, Department of Virology, Lelystad, Netherlands
| | - Wendy van Voorst
- Wageningen Bioveterinary Research, Department of Virology, Lelystad, Netherlands
- Poultry Department, GD-Animal Health, Deventer, Netherlands
| | | | - Saskia A. Bergervoet
- Wageningen Bioveterinary Research, Department of Virology, Lelystad, Netherlands
| | - Marc Y. Engelsma
- Wageningen Bioveterinary Research, Department of Virology, Lelystad, Netherlands
| | | | - Nancy Beerens
- Wageningen Bioveterinary Research, Department of Virology, Lelystad, Netherlands
| |
Collapse
|
13
|
Horigan V, Gale P, Adkin A, Brown I, Clark J, Kelly L. A qualitative risk assessment of cleansing and disinfection requirements after an avian influenza outbreak in commercial poultry. Br Poult Sci 2019; 60:691-699. [PMID: 31474117 DOI: 10.1080/00071668.2019.1655707] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
1. During an avian influenza (AI) outbreak in the United Kingdom, the joint aim of the poultry industry and the Government is to eliminate and prevent the spread of infection, through control measures based on the current European Union (EU) Council Directive (2005/94/EC). An essential part of these measures is the cleansing and disinfection (C&D) of infected premises.2. This risk assessment assessed the differences in re-infection in a repopulated flock if the EU Directive is interpreted to permit secondary C&D to be undertaken either with or without dismantling complex equipment. The assessment estimated the probability of virus survival on different types of equipment in a depopulated contaminated poultry house before and after preliminary and secondary C&D procedures. A risk matrix spreadsheet tool was used to carry out the assessment and concluded that, provided secondary C&D is carried out with due diligence (i.e. carried out to a defined code of practice as agreed by both industry and policymakers), the risk of re-infection from equipment is negligible, both with and without dismantling complex equipment in all farm types considered.3. By considering the equipment types individually, the assessment identified those areas of the house which may still contain viable virus post-preliminary C&D and on which attention should be focussed during secondary C&D. The generic risk pathway and matrix spreadsheet tool have the potential to be used for other pathogens and species, given appropriate data.
Collapse
Affiliation(s)
- V Horigan
- Department of Epidemiological Sciences, Animal and Plant Health Agency, Surrey, UK
| | - P Gale
- Department of Epidemiological Sciences, Animal and Plant Health Agency, Surrey, UK
| | - A Adkin
- Department of Epidemiological Sciences, Animal and Plant Health Agency, Surrey, UK
| | - I Brown
- Department of Virology, Animal and Plant Health Agency, Surrey, UK
| | - J Clark
- Department of Virology, Animal and Plant Health Agency, Surrey, UK
| | - L Kelly
- Department of Epidemiological Sciences, Animal and Plant Health Agency, Surrey, UK.,Department of Mathematics and Statistics, University of Strathclyde, Glasgow, UK
| |
Collapse
|
14
|
Densmore CL, Iwanowicz DD, Ottinger CA, Hindman LJ, Bessler AM, Iwanowicz LR, Prosser DJ, Whitbeck M, Driscoll CP. Molecular Detection of Avian Influenza Virus from Sediment Samples in Waterfowl Habitats on the Delmarva Peninsula, United States. Avian Dis 2019; 61:520-525. [PMID: 29337613 DOI: 10.1637/11687-060917-resnote.1] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Avian influenza viruses (AIV) affect many species of birds including waterfowl and may persist in sediment in aquatic habitats. Sediment samples were collected from two areas representative of prime migration and overwintering waterfowl habitat in Dorchester County, Maryland in the fall and winter of 2013-2014. Samples were screened for the presence of AIV via reverse transcriptase-quantitative PCR targeting the matrix gene. Although 13.6% of sediment samples were positive for the AIV matrix gene across all collection dates and locations, differences in detection were noted with location and collection season. Percentage of AIV-positive sediment samples recovered corresponded to trends in waterfowl abundance at collection sites both temporally and spatially. These findings provide further support for the assertion that the presence of AIV in the aquatic environment is likely affected by the total number, site-specific density, and array of waterfowl species.
Collapse
Affiliation(s)
- C L Densmore
- A United States Geological Survey, Leetown Science Center, 11649 Leetown Road, Kearneysville, WV 25430
| | - D D Iwanowicz
- A United States Geological Survey, Leetown Science Center, 11649 Leetown Road, Kearneysville, WV 25430
| | - C A Ottinger
- A United States Geological Survey, Leetown Science Center, 11649 Leetown Road, Kearneysville, WV 25430
| | - L J Hindman
- B Maryland Department of Natural Resources, 828B Airpax Road, Cambridge, MD 21613
| | - A M Bessler
- C Chesapeake Marshlands NWR Complex, 2145 Key Wallace Drive, Cambridge, MD 21613
| | - L R Iwanowicz
- A United States Geological Survey, Leetown Science Center, 11649 Leetown Road, Kearneysville, WV 25430
| | - D J Prosser
- D United States Geological Survey, Patuxent Wildlife Research Center, Beltsville Lab, 10300 Baltimore Avenue, Beltsville, MD 20705
| | - M Whitbeck
- C Chesapeake Marshlands NWR Complex, 2145 Key Wallace Drive, Cambridge, MD 21613
| | - C P Driscoll
- E Maryland Department of Natural Resources, Cooperative Oxford Laboratory, 904 South Morris Street, Oxford, MD 21654
| |
Collapse
|
15
|
Hird SM, Ganz H, Eisen JA, Boyce WM. The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Virus Infection Status. mSphere 2018; 3:e00382-18. [PMID: 30355662 PMCID: PMC6200988 DOI: 10.1128/msphere.00382-18] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2018] [Accepted: 09/26/2018] [Indexed: 02/08/2023] Open
Abstract
Waterfowl, especially ducks of the genus Anas, are natural reservoir species for influenza A virus (IAV). Duck populations contain nearly all the known diversity of IAVs, and the birds are asymptomatic to infection. Previous work established that IAV infection status is correlated with changes in the cloacal microbiome in juvenile mallards. Here, we analyze five Anas species to determine whether these duck species have similar IAV+ and IAV- cloacal microbiomes, or if the relationships among a host, influenza virus, and the microbiome are species specific. We assessed taxonomic composition of the microbiome, alpha diversity, and beta diversity and found very few patterns related to microbiome and infection status across species, while detecting strong differences within species. A host species-specific signal was stronger in IAV- ducks than IAV+ ducks, and the effect size of host species on the microbiome was three times higher in IAV- birds than IAV+ birds. The mallards and the northern shovelers, the species with highest sample sizes but also with differing feeding ecology, showed especially contrasting patterns in microbiome composition, alpha diversity, and beta diversity. Our results indicate that the microbiome may have a unique relationship with influenza virus infection at the species level.IMPORTANCE Waterfowl are natural reservoir species for influenza A virus (IAV). Thus, they maintain high levels of pathogen diversity, are asymptomatic to the infection, and also contribute to the risk of a global influenza pandemic. An individual's microbiome is a critical part in how a vertebrate manages pathogens and illness. Here, we describe the cloacal microbiome of 300 wild ducks, from five species (four with previously undescribed microbiomes), including both IAV-negative and IAV-positive individuals. We demonstrate that there is not one consistent "flu-like" microbiome or response to flu across species. Individual duck species appear to have unique relationships between their microbiomes and IAV, and IAV-negative birds have a stronger tie to host species than the IAV-positive birds. In a broad context, understanding the role of the microbiome in IAV reservoir species may have future implications for avian disease management.
Collapse
Affiliation(s)
- Sarah M Hird
- Department of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, USA
| | - Holly Ganz
- AnimalBiome, Oakland, California, USA
- Genome Center, University of California, Davis, Davis, California, USA
| | - Jonathan A Eisen
- Genome Center, University of California, Davis, Davis, California, USA
| | - Walter M Boyce
- Pathology, Microbiology and Immunology, University of California, Davis, Davis, California, USA
| |
Collapse
|
16
|
SURVEY OF ARCTIC ALASKAN WILDLIFE FOR INFLUENZA A ANTIBODIES: LIMITED EVIDENCE FOR EXPOSURE OF MAMMALS. J Wildl Dis 2018; 55:387-398. [PMID: 30289331 DOI: 10.7589/2018-05-128] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Influenza A viruses (IAVs) are maintained in wild waterbirds and have the potential to infect a broad range of species, including wild mammals. The Arctic Coastal Plain of Alaska supports a diverse suite of species, including waterfowl that are common hosts of IAVs. Mammals co-occur with geese and other migratory waterbirds during the summer breeding season, providing a plausible mechanism for interclass transmission of IAVs. To estimate IAV seroprevalence and identify the subtypes to which geese, loons, Arctic foxes ( Vulpes lagopus), caribou ( Rangifer tarandus), and polar bears ( Ursus maritimus) are potentially exposed, we used a blocking enzyme-linked immunosorbent assay (bELISA) and a hemagglutination inhibition (HI) assay to screen for antibodies to IAVs in samples collected during spring and summer of 2012-16. Apparent IAV seroprevalence using the bELISA was 50.3% in geese (range by species: 46-52.8%), 9% in loons (range by species: 3-20%), and 0.4% in Arctic foxes. We found no evidence for exposure to IAVs in polar bears or caribou by either assay. Among geese, we estimated detection probability from replicate bELISA analyses to be 0.92 and also found good concordance (>85%) between results from bELISA and HI assays, which identified antibodies reactive to H1, H6, and H9 subtype IAVs. In contrast, the HI assay detected antibodies in only one of seven loon samples that were positive by bELISA; that sample had low titers to both H4 and H5 IAV subtypes. Our results provide evidence that a relatively high proportion of waterbirds breeding on the Arctic Coastal Plain are exposed to IAVs, although it is unknown whether such exposure occurs locally or on staging or wintering grounds. In contrast, seroprevalence of IAVs in concomitant Arctic mammals is apparently low.
Collapse
|
17
|
Gustafson L, Jones R, Dufour-Zavala L, Jensen E, Malinak C, McCarter S, Opengart K, Quinn J, Slater T, Delgado A, Talbert M, Garber L, Remmenga M, Smeltzer M. Expert Elicitation Provides a Rapid Alternative to Formal Case-Control Study of an H7N9 Avian Influenza Outbreak in the United States. Avian Dis 2018; 62:201-209. [DOI: 10.1637/11801-011818-reg.1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- L. Gustafson
- United States Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, Center for Epidemiology and Animal Health, 2150 Centre Avenue, Fort Collins, CO 80526
| | - R. Jones
- United States Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, Center for Epidemiology and Animal Health, 2150 Centre Avenue, Fort Collins, CO 80526
| | - L. Dufour-Zavala
- Georgia Poultry Laboratory Network, 3235 Abit Massey Way, Gainesville, GA 30507
| | - E. Jensen
- Aviagen North America, 920 Explorer Boulevard NW, Huntsville, AL 35806
| | - C. Malinak
- Peco Foods, Inc., 145 2nd Avenue NW, Gordo, AL 35466
| | - S. McCarter
- Tyson Foods, Inc., 649 Sherwood Road NE, Atlanta, GA 30324
| | - K. Opengart
- Global Sustainability & Animal Welfare, Keystone Foods, 6767 Old Madison Pike, Huntsville, AL 35806
| | - J. Quinn
- United States Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, District 1 Field Office for North Carolina–West Virginia, 920 Main Campus Drive, Suite 200, Raleigh, NC 27606
| | - T. Slater
- Hinton Mitchem Poultry Diagnostic Laboratory, Alabama Department of Agriculture and Industries, P.O. Box 409, Hanceville, AL 35077
| | - A. Delgado
- United States Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, Center for Epidemiology and Animal Health, 2150 Centre Avenue, Fort Collins, CO 80526
| | - M. Talbert
- United States Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, Center for Epidemiology and Animal Health, 2150 Centre Avenue, Fort Collins, CO 80526
| | - L. Garber
- United States Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, Center for Epidemiology and Animal Health, 2150 Centre Avenue, Fort Collins, CO 80526
| | - M. Remmenga
- United States Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, Center for Epidemiology and Animal Health, 2150 Centre Avenue, Fort Collins, CO 80526
| | - M. Smeltzer
- Georgia Poultry Laboratory Network, 3235 Abit Massay Way, Gainesville, GA 30507
| |
Collapse
|
18
|
Liu H, Xiong C, Chen J, Chen G, Zhang J, Li Y, Xiong Y, Wang R, Cao Y, Chen Q, Liu D, Wang H, Chen J. Two genetically diverse H7N7 avian influenza viruses isolated from migratory birds in central China. Emerg Microbes Infect 2018; 7:62. [PMID: 29636458 PMCID: PMC5893581 DOI: 10.1038/s41426-018-0064-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2017] [Revised: 03/02/2018] [Accepted: 03/11/2018] [Indexed: 12/03/2022]
Abstract
After the emergence of H7N9 avian influenza viruses (AIV) in early 2013 in China, active surveillance of AIVs in migratory birds was undertaken, and two H7N7 strains were subsequently recovered from the fresh droppings of migratory birds; the strains were from different hosts and sampling sites. Phylogenetic and sequence similarity network analyses indicated that several genes of the two H7N7 viruses were closely related to those in AIVs circulating in domestic poultry, although different gene segments were implicated in the two isolates. This strongly suggested that genes from viruses infecting migratory birds have been introduced into poultry-infecting strains. A Bayesian phylogenetic reconstruction of all eight segments implied that multiple reassortments have occurred in the evolution of these viruses, particularly during late 2011 and early 2014. Antigenic analysis using a hemagglutination inhibition test showed that the two H7N7 viruses were moderately cross-reactive with H7N9-specific anti-serum. The ability of the two H7N7 viruses to remain infectious under various pH and temperature conditions was evaluated, and the viruses persisted the longest at near-neutral pH and in cold temperatures. Animal infection experiments showed that the viruses were avirulent to mice and could not be recovered from any organs. Our results indicate that low pathogenic, divergent H7N7 viruses circulate within the East Asian-Australasian flyway. Virus dispersal between migratory birds and domestic poultry may increase the risk of the emergence of novel unprecedented strains.
Collapse
Affiliation(s)
- Haizhou Liu
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China
| | - Chaochao Xiong
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China
| | - Jing Chen
- Hubei Wildlife Rescue, Research and Development Center, Wuhan, Hubei, 430074, China
| | - Guang Chen
- Hubei Wildlife Rescue, Research and Development Center, Wuhan, Hubei, 430074, China
| | - Jun Zhang
- Hubei Wildlife Rescue, Research and Development Center, Wuhan, Hubei, 430074, China
| | - Yong Li
- Hubei Wildlife Rescue, Research and Development Center, Wuhan, Hubei, 430074, China
| | - Yanping Xiong
- Hubei Wildlife Rescue, Research and Development Center, Wuhan, Hubei, 430074, China
| | - Runkun Wang
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China
| | - Ying Cao
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China
| | - Quanjiao Chen
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China
- Center for Influenza Research and Early warning (CASCIRE), Chinese Academy of Sciences, Beijing, 100101, China
| | - Di Liu
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China
- Center for Influenza Research and Early warning (CASCIRE), Chinese Academy of Sciences, Beijing, 100101, China
- University of Chinese Academy Sciences, Beijing, 101409, China
| | - Hanzhong Wang
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China
| | - Jianjun Chen
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, Hubei, 430071, China.
- Center for Influenza Research and Early warning (CASCIRE), Chinese Academy of Sciences, Beijing, 100101, China.
| |
Collapse
|
19
|
Houston DD, Azeem S, Lundy CW, Sato Y, Guo B, Blanchong JA, Gauger PC, Marks DR, Yoon KJ, Adelman JS. Evaluating the role of wild songbirds or rodents in spreading avian influenza virus across an agricultural landscape. PeerJ 2017; 5:e4060. [PMID: 29255648 PMCID: PMC5732541 DOI: 10.7717/peerj.4060] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Accepted: 10/28/2017] [Indexed: 12/21/2022] Open
Abstract
BACKGROUND Avian influenza virus (AIV) infections occur naturally in wild bird populations and can cross the wildlife-domestic animal interface, often with devastating impacts on commercial poultry. Migratory waterfowl and shorebirds are natural AIV reservoirs and can carry the virus along migratory pathways, often without exhibiting clinical signs. However, these species rarely inhabit poultry farms, so transmission into domestic birds likely occurs through other means. In many cases, human activities are thought to spread the virus into domestic populations. Consequently, biosecurity measures have been implemented to limit human-facilitated outbreaks. The 2015 avian influenza outbreak in the United States, which occurred among poultry operations with strict biosecurity controls, suggests that alternative routes of virus infiltration may exist, including bridge hosts: wild animals that transfer virus from areas of high waterfowl and shorebird densities. METHODS Here, we examined small, wild birds (songbirds, woodpeckers, etc.) and mammals in Iowa, one of the regions hit hardest by the 2015 avian influenza epizootic, to determine whether these animals carry AIV. To assess whether influenza A virus was present in other species in Iowa during our sampling period, we also present results from surveillance of waterfowl by the Iowa Department of Natural Resources and Unites Stated Department of Agriculture. RESULTS Capturing animals at wetlands and near poultry facilities, we swabbed 449 individuals, internally and externally, for the presence of influenza A virus and no samples tested positive by qPCR. Similarly, serology from 402 animals showed no antibodies against influenza A. Although several species were captured at both wetland and poultry sites, the overall community structure of wild species differed significantly between these types of sites. In contrast, 83 out of 527 sampled waterfowl tested positive for influenza A via qPCR. DISCUSSION These results suggest that even though influenza A viruses were present on the Iowa landscape at the time of our sampling, small, wild birds and rodents were unlikely to be frequent bridge hosts.
Collapse
Affiliation(s)
- Derek D. Houston
- Department of Natural Resource Ecology and Management, Iowa State University, Ames, IA, United States of America
- Department of Natural and Environmental Sciences, Western State Colorado University, Gunnison, CO, United States of America
| | - Shahan Azeem
- Department of Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, United States of America
| | - Coady W. Lundy
- Department of Natural Resource Ecology and Management, Iowa State University, Ames, IA, United States of America
- Animal and Plant Health Inspection Service, Wildlife Services, United States Department of Agriculture, Urbandale, IA, United States of America
| | - Yuko Sato
- Department of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, United States of America
| | - Baoqing Guo
- Department of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, United States of America
| | - Julie A. Blanchong
- Department of Natural Resource Ecology and Management, Iowa State University, Ames, IA, United States of America
| | - Phillip C. Gauger
- Department of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, United States of America
| | - David R. Marks
- Animal and Plant Health Inspection Service, Wildlife Services, United States Department of Agriculture, Urbandale, IA, United States of America
| | - Kyoung-Jin Yoon
- Department of Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, United States of America
- Department of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, United States of America
| | - James S. Adelman
- Department of Natural Resource Ecology and Management, Iowa State University, Ames, IA, United States of America
| |
Collapse
|
20
|
Bandoro C, Runstadler JA. Bacterial Lipopolysaccharide Destabilizes Influenza Viruses. mSphere 2017; 2:e00267-17. [PMID: 29034326 PMCID: PMC5636225 DOI: 10.1128/msphere.00267-17] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Accepted: 09/20/2017] [Indexed: 12/16/2022] Open
Abstract
Depending on the specific viral pathogen, commensal bacteria can promote or reduce the severity of viral infection and disease progression in their hosts. Influenza A virus (IAV) has a broad host range, comprises many subtypes, and utilizes different routes of transmission, including the fecal-oral route in wild birds. It has been previously demonstrated that commensal bacteria can interact with the host's immune system to protect against IAV pathogenesis. However, it is unclear whether bacteria and their products may be interacting directly with IAV to impact virion stability. Herein we show that gastrointestinal (GI) tract bacterial isolates in an in vitro system significantly reduce the stability of IAV. Moreover, bacterial lipopolysaccharide (LPS), found on the exterior surfaces of bacteria, was sufficient to significantly decrease the stability of both human and avian viral strains in a temperature-dependent manner, including at the relevant temperatures of their respective hosts and the external aquatic habitat. The subtype and host origin of the viruses were shown to affect the extent to which IAV was susceptible to LPS. Furthermore, using a receptor binding assay and transmission electron microscopy, we observed that LPS binds to and alters the morphology of influenza virions, suggesting that direct interaction with the viral surface contributes to the observed antiviral effect of LPS on influenza. IMPORTANCE Influenza A virus (IAV), transmitted primarily via the fecal-oral route in wild birds, encounters high concentrations of bacteria and their products. Understanding the extent to which bacteria affect the infectivity of IAV will lead to a broader understanding of viral ecology in reservoir hosts and may lead to insights for the development of therapeutics in respiratory infection. Herein we show that bacteria and lipopolysaccharide (LPS) interact with and destabilize influenza virions. Moreover, we show that LPS reduces the long-term persistence and freeze-thaw stability of IAV, which is important information for modeling the movement and emergence of novel strains from animal hosts. Our results, demonstrating that the subtype and host origin of a virus also influence its susceptibility to LPS, raise key questions about the fitness of viruses in reservoir hosts, their potential to transmit to humans, and the importance of bacterial-viral interactions in viral ecology.
Collapse
Affiliation(s)
- Christopher Bandoro
- Microbiology Graduate Program, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | - Jonathan A. Runstadler
- Microbiology Graduate Program, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
- Division of Comparative Medicine, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| |
Collapse
|
21
|
Dalziel AE, Delean S, Heinrich S, Cassey P. Correction: Persistence of Low Pathogenic Influenza A Virus in Water: A Systematic Review and Quantitative Meta-Analysis. PLoS One 2016; 11:e0168789. [PMID: 27992568 PMCID: PMC5161382 DOI: 10.1371/journal.pone.0168789] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
[This corrects the article DOI: 10.1371/journal.pone.0161929.].
Collapse
|