1
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Zou C, Yi X, Li H, Bizic M, Berman-Frank I, Gao K. Correlation of methane production with physiological traits in Trichodesmium IMS 101 grown with methylphosphonate at different temperatures. Front Microbiol 2024; 15:1396369. [PMID: 38894967 PMCID: PMC11184136 DOI: 10.3389/fmicb.2024.1396369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Accepted: 05/20/2024] [Indexed: 06/21/2024] Open
Abstract
The diazotrophic cyanobacterium Trichodesmium has been recognized as a potentially significant contributor to aerobic methane generation via several mechanisms including the utilization of methylphophonate (MPn) as a source of phosphorus. Currently, there is no information about how environmental factors regulate methane production by Trichodesmium. Here, we grew Trichodesmium IMS101 at five temperatures ranging from 16 to 31°C, and found that its methane production rates increased with rising temperatures to peak (1.028 ± 0.040 nmol CH4 μmol POC-1 day-1) at 27°C, and then declined. Its specific growth rate changed from 0.03 ± 0.01 d-1 to 0.34 ± 0.02 d-1, with the optimal growth temperature identified between 27 and 31°C. Within the tested temperature range the Q10 for the methane production rate was 4.6 ± 0.7, indicating a high sensitivity to thermal changes. In parallel, the methane production rates showed robust positive correlations with the assimilation rates of carbon, nitrogen, and phosphorus, resulting in the methane production quotients (molar ratio of carbon, nitrogen, or phosphorus assimilated to methane produced) of 227-494 for carbon, 40-128 for nitrogen, and 1.8-3.4 for phosphorus within the tested temperature range. Based on the experimental data, we estimated that the methane released from Trichodesmium can offset about 1% of its CO2 mitigation effects.
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Affiliation(s)
- Chuze Zou
- State Key Laboratory of Marine Environmental Science, College of the Ocean and Earth Sciences, Xiamen University, Xiamen, China
| | - Xiangqi Yi
- Polar and Marine Research Institute, College of Harbor and Coastal Engineering, Jimei University, Xiamen, China
| | - He Li
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Mina Bizic
- Department of Environmental Microbiomics, Institute of Environmental Technology, Technical University of Berlin, Berlin, Germany
- Department of Plankton and Microbial Ecology, Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Stechlin, Germany
| | - Ilana Berman-Frank
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel
| | - Kunshan Gao
- State Key Laboratory of Marine Environmental Science, College of the Ocean and Earth Sciences, Xiamen University, Xiamen, China
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, China
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2
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Via C, Grauso L, McManus KM, Kirk RD, Kim AM, Webb EA, Held NA, Saito MA, Scarpato S, Zimba PV, Moeller PDR, Mangoni A, Bertin MJ. Spatial and Temporal Resolution of Cyanobacterial Bloom Chemistry Reveals an Open-Ocean Trichodesmium thiebautii as a Talented Producer of Specialized Metabolites. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:9525-9535. [PMID: 38758591 PMCID: PMC11155244 DOI: 10.1021/acs.est.3c10739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 05/01/2024] [Accepted: 05/03/2024] [Indexed: 05/18/2024]
Abstract
While the ecological role that Trichodesmium sp. play in nitrogen fixation has been widely studied, little information is available on potential specialized metabolites that are associated with blooms and standing stock Trichodesmium colonies. While a collection of biological material from a T. thiebautii bloom event from North Padre Island, Texas, in 2014 indicated that this species was a prolific producer of chlorinated specialized metabolites, additional spatial and temporal resolution was needed. We have completed these metabolite comparison studies, detailed in the current report, utilizing LC-MS/MS-based molecular networking to visualize and annotate the specialized metabolite composition of these Trichodesmium blooms and colonies in the Gulf of Mexico (GoM) and other waters. Our results showed that T. thiebautii blooms and colonies found in the GoM have a remarkably consistent specialized metabolome. Additionally, we isolated and characterized one new macrocyclic compound from T. thiebautii, trichothilone A (1), which was also detected in three independent cultures of T. erythraeum. Genome mining identified genes predicted to synthesize certain functional groups in the T. thiebautii metabolites. These results provoke intriguing questions of how these specialized metabolites affect Trichodesmium ecophysiology, symbioses with marine invertebrates, and niche development in the global oligotrophic ocean.
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Affiliation(s)
- Christopher
W. Via
- Department
of Biomedical and Pharmaceutical Sciences, College of Pharmacy, University of Rhode Island, 7 Greenhouse Road, Kingston, Rhode Island 02881, United States
| | - Laura Grauso
- Dipartimento
di Agraria, Università degli Studi
di Napoli Federico II, via Universita 100, Portici Napoli 80055, Italy
| | - Kelly M. McManus
- Department
of Biomedical and Pharmaceutical Sciences, College of Pharmacy, University of Rhode Island, 7 Greenhouse Road, Kingston, Rhode Island 02881, United States
| | - Riley D. Kirk
- Department
of Biomedical and Pharmaceutical Sciences, College of Pharmacy, University of Rhode Island, 7 Greenhouse Road, Kingston, Rhode Island 02881, United States
| | - Andrew M. Kim
- Department
of Biomedical and Pharmaceutical Sciences, College of Pharmacy, University of Rhode Island, 7 Greenhouse Road, Kingston, Rhode Island 02881, United States
| | - Eric A. Webb
- Marine
and Environmental Biology, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089, United States
| | - Noelle A. Held
- Marine
and Environmental Biology, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089, United States
| | - Mak A. Saito
- Department
of Marine Chemistry and Geochemistry, Woods
Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, United States
| | - Silvia Scarpato
- Dipartimento
di Farmacia, Università degli Studi
di Napoli Federico II, via Domenico Montesano 49, Napoli 80131, Italy
| | - Paul V. Zimba
- Rice Rivers
Center, Virginia Commonwealth University, Richmond, Virginia 23284, United States
| | - Peter D. R. Moeller
- Harmful
Algal Bloom Monitoring and Reference Branch, Stressor Detection and
Impacts Division, National Ocean Service/NOAA,
Hollings Marine Laboratory, 331 Fort Johnson Road, Charleston, South Carolina 29412, United States
| | - Alfonso Mangoni
- Dipartimento
di Farmacia, Università degli Studi
di Napoli Federico II, via Domenico Montesano 49, Napoli 80131, Italy
| | - Matthew J. Bertin
- Department
of Chemistry, Case Western Reserve University, Cleveland, Ohio 44106, United States
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3
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Li Z, Gaitan-Espitia JD. Temperature-dependent toxicity of fluoxetine alters the thermal plasticity of marine diatoms. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 926:172146. [PMID: 38569963 DOI: 10.1016/j.scitotenv.2024.172146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 03/15/2024] [Accepted: 03/30/2024] [Indexed: 04/05/2024]
Abstract
Anthropogenic activities have led to the emergence of pharmaceutical pollution in marine ecosystems, posing a significant threat to biodiversity in conjunction with global climate change. While the ecotoxicity of human drugs on aquatic organisms is increasingly recognized, their interactions with environmental factors, such as temperature, remain understudied. This research investigates the physiological effects of the selective serotonin reuptake inhibitor (SSRI), fluoxetine, on two diatom species, Phaeodactylum tricornutum and Thalassiosira weissflogii. Results demonstrate that fluoxetine significantly reduces growth rate and biomass production, concurrently affecting pigment contents and the thermal performance curve (TPC) of the diatoms. Fluoxetine reduces the synthesis of chlorophyll a (Chl a) and carotenoid (Car), indicating inhibition of photosynthesis and photoprotection. Furthermore, fluoxetine decreases the maximum growth rate (μmax) while increasing the optimum temperature (Topt) in both species, suggesting an altered thermal plasticity. This shift is attributed to the observed decrease in the inhibition rate of fluoxetine with rising temperatures. These findings emphasize the physiological impacts and ecological implications of fluoxetine on phytoplankton and underscore the significance of considering interactions between multiple environmental drivers when accessing the ecotoxicity of potential pollutants. The present study provides insights into crucial considerations for evaluating the impacts of pharmaceutical pollution on marine primary producers.
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Affiliation(s)
- Zhenzhen Li
- The SWIRE Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Hong Kong
| | - Juan Diego Gaitan-Espitia
- The SWIRE Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Hong Kong.
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4
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Kato Y, Inabe K, Haraguchi Y, Shimizu T, Kondo A, Hasunuma T. L-Lactate treatment by photosynthetic cyanobacteria expressing heterogeneous L-lactate dehydrogenase. Sci Rep 2023; 13:7249. [PMID: 37142758 PMCID: PMC10160077 DOI: 10.1038/s41598-023-34289-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 04/27/2023] [Indexed: 05/06/2023] Open
Abstract
L-Lactate is a major waste compound in cultured animal cells. To develop a sustainable animal cell culture system, we aimed to study the consumption of L-lactate using a photosynthetic microorganism. As genes involved in L-lactate utilization were not found in most cyanobacteria and microalgae, we introduced the NAD-independent L-lactate dehydrogenase gene from Escherichia coli (lldD) into Synechococcus sp. PCC 7002. The lldD-expressing strain consumed L-lactate added to basal medium. This consumption was accelerated by expression of a lactate permease gene from E. coli (lldP) and an increase in culture temperature. Intracellular levels of acetyl-CoA, citrate, 2-oxoglutarate, succinate, and malate, and extracellular levels of 2-oxoglutarate, succinate, and malate, increased during L-lactate utilization, suggesting that the metabolic flux from L-lactate was distributed toward the tricarboxylic acid cycle. This study provides a perspective on L-lactate treatment by photosynthetic microorganisms, which would increase the feasibility of animal cell culture industries.
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Affiliation(s)
- Yuichi Kato
- Engineering Biology Research Center, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
| | - Kosuke Inabe
- Engineering Biology Research Center, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
| | - Yuji Haraguchi
- Institute of Advanced Biomedical Engineering and Science, TWIns, Tokyo Women's Medical University, 8-1 Kawada, Shinjuku, Tokyo, 162-8666, Japan
| | - Tatsuya Shimizu
- Institute of Advanced Biomedical Engineering and Science, TWIns, Tokyo Women's Medical University, 8-1 Kawada, Shinjuku, Tokyo, 162-8666, Japan
| | - Akihiko Kondo
- Engineering Biology Research Center, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
- Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan
| | - Tomohisa Hasunuma
- Engineering Biology Research Center, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan.
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501, Japan.
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5
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Investigating the Unique Ability of Trichodesmium To Fix Carbon and Nitrogen Simultaneously Using MiMoSA. mSystems 2023; 8:e0060120. [PMID: 36598239 PMCID: PMC9948733 DOI: 10.1128/msystems.00601-20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
The open ocean is an extremely competitive environment, partially due to the dearth of nutrients. Trichodesmium erythraeum, a marine diazotrophic cyanobacterium, is a keystone species in the ocean due to its ability to fix nitrogen and leak 30 to 50% into the surrounding environment, providing a valuable source of a necessary macronutrient to other species. While there are other diazotrophic cyanobacteria that play an important role in the marine nitrogen cycle, Trichodesmium is unique in its ability to fix both carbon and nitrogen simultaneously during the day without the use of specialized cells called heterocysts to protect nitrogenase from oxygen. Here, we use the advanced modeling framework called multiscale multiobjective systems analysis (MiMoSA) to investigate how Trichodesmium erythraeum can reduce dimolecular nitrogen to ammonium in the presence of oxygen. Our simulations indicate that nitrogenase inhibition is best modeled as Michealis-Menten competitive inhibition and that cells along the filament maintain microaerobia using high flux through Mehler reactions in order to protect nitrogenase from oxygen. We also examined the effect of location on metabolic flux and found that cells at the end of filaments operate in distinctly different metabolic modes than internal cells despite both operating in a photoautotrophic mode. These results give us important insight into how this species is able to operate photosynthesis and nitrogen fixation simultaneously, giving it a distinct advantage over other diazotrophic cyanobacteria because they can harvest light directly to fuel the energy demand of nitrogen fixation. IMPORTANCE Trichodesmium erythraeum is a marine cyanobacterium responsible for approximately half of all biologically fixed nitrogen, making it an integral part of the global nitrogen cycle. Interestingly, unlike other nitrogen-fixing cyanobacteria, Trichodesmium does not use temporal or spatial separation to protect nitrogenase from oxygen poisoning; instead, it operates photosynthesis and nitrogen fixation reactions simultaneously during the day. Unfortunately, the exact mechanism the cells utilize to operate carbon and nitrogen fixation simultaneously is unknown. Here, we use an advanced metabolic modeling framework to investigate and identify the most likely mechanisms Trichodesmium uses to protect nitrogenase from oxygen. The model predicts that cells operate in a microaerobic mode, using both respiratory and Mehler reactions to dramatically reduce intracellular oxygen concentrations.
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6
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Marchessaux G, Lüskow F, Bejean M, Pakhomov EA. Increasing Temperature Facilitates Polyp Spreading and Medusa Appearance of the Invasive Hydrozoan Craspedacusta sowerbii. BIOLOGY 2022; 11:biology11081100. [PMID: 35892956 PMCID: PMC9331908 DOI: 10.3390/biology11081100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Revised: 07/20/2022] [Accepted: 07/21/2022] [Indexed: 12/05/2022]
Abstract
The freshwater jellyfish Craspedacusta sowerbii is among the most widespread invasive species, observed across a wide temperature range. The aim of this study is to analyze the polyp and medusa stages response to different temperatures by using (i) an experimental study on the polyp colony growth at 19 and 29 °C, and (ii) prediction of the Thermal Habitat Suitability (THS) based on the thermal tolerance of the medusa stage. The total number of polyps and colonies was greater at high temperature. At 19 °C, colonies with 1 to 5 polyps were present, with colonies of 1 to 3 polyps numerically dominating. At 29 °C, colonies were 80% composed of 1- to 2-polyps. Based on the published medusa pulsation rhythm data, a Thermal Performance Curve (TPC) regression was performed and used to monthly predict the THS for current and future (2050 and 2100) scenarios. The southern hemisphere offered optimal conditions (THS > 0.6) year-round. In the northern hemisphere, the optimum period was predicted to be between June and September. The future THS were considerably larger than at present with an increase in optimal THS at higher latitudes (up to 60° N). The combination of experimental and modeling approaches allows to identify the optimal thermal conditions of the polyp and medusa stages and to predict their invasive capacities.
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Affiliation(s)
- Guillaume Marchessaux
- Department of Earth and Marine Science, University of Palermo, Viale delle Scienze, 90128 Palermo, Italy
- Correspondence:
| | - Florian Lüskow
- Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, 2039-2207 Main Mall, Vancouver, BC V6T 1Z4, Canada; (F.L.); (E.A.P.)
- Institute for the Oceans and Fisheries, University of British Columbia, 2202 Main Mall, Vancouver, BC V6T 1Z4, Canada
| | - Mickaël Bejean
- Muséum de Besançon, 99 Rue Des Fusillés, La Citadelle, 25000 Besançon, France;
| | - Evgeny A. Pakhomov
- Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, 2039-2207 Main Mall, Vancouver, BC V6T 1Z4, Canada; (F.L.); (E.A.P.)
- Institute for the Oceans and Fisheries, University of British Columbia, 2202 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Hakai Institute, Heriot Bay, BC V0P 1H0, Canada
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7
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Qu PP, Fu FX, Wang XW, Kling JD, Elghazzawy M, Huh M, Zhou QQ, Wang C, Mak EWK, Lee MD, Yang N, Hutchins DA. Two co-dominant nitrogen-fixing cyanobacteria demonstrate distinct acclimation and adaptation responses to cope with ocean warming. ENVIRONMENTAL MICROBIOLOGY REPORTS 2022; 14:203-217. [PMID: 35023627 DOI: 10.1111/1758-2229.13041] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2021] [Revised: 12/17/2021] [Accepted: 12/18/2021] [Indexed: 05/28/2023]
Abstract
The globally dominant N2 -fixing cyanobacteria Trichodesmium and Crocosphaera provide vital nitrogen supplies to subtropical and tropical oceans, but little is known about how they will be affected by long-term ocean warming. We tested their thermal responses using experimental evolution methods during 2 years of selection at optimal (28°C), supra-optimal (32°C) and suboptimal (22°C) temperatures. After several hundred generations under thermal selection, changes in growth parameters, as well as N and C fixation rates, suggested that Trichodesmium did not adapt to the three selection temperature regimes during the 2-year evolution experiment, but could instead rapidly and reversibly acclimate to temperature shifts from 20°C to 34°C. In contrast, over the same timeframe apparent thermal adaptation was observed in Crocosphaera, as evidenced by irreversible phenotypic changes as well as whole-genome sequencing and variant analysis. Especially under stressful warming conditions (34°C), 32°C-selected Crocosphaera cells had an advantage in survival and nitrogen fixation over cell lines selected at 22°C and 28°C. The distinct strategies of phenotypic plasticity versus irreversible adaptation in these two sympatric diazotrophs are both viable ways to maintain fitness despite long-term temperature changes, and so could help to stabilize key ocean nitrogen cycle functions under future warming scenarios.
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Affiliation(s)
- Ping-Ping Qu
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA
| | - Fei-Xue Fu
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA
| | - Xin-Wei Wang
- School of Marine Sciences, Ningbo University, Ningbo, Zhejiang, 315211, China
| | - Joshua D Kling
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA
| | - Mariam Elghazzawy
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA
| | - Megan Huh
- Department of Preventative Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90089, USA
| | - Qian-Qian Zhou
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, Fujian, 361005, China
| | - Chunguang Wang
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, Fujian, 361005, China
| | - Esther Wing Kwan Mak
- Department of Ocean Sciences and Institute of Marine Sciences, University of California, Santa Cruz, CA, 95064, USA
| | - Michael D Lee
- Exobiology Branch, NASA Ames Research Center, Mountain View, CA, 94035, USA
- Blue Marble Space Institute of Science, Seattle, WA, 98154, USA
| | - Nina Yang
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA
| | - David A Hutchins
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA
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8
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Wu S, Mi T, Zhen Y, Yu K, Wang F, Yu Z. A Rise in ROS and EPS Production: New Insights into the Trichodesmium erythraeum Response to Ocean Acidification. JOURNAL OF PHYCOLOGY 2021; 57:172-182. [PMID: 32975309 DOI: 10.1111/jpy.13075] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 08/20/2020] [Accepted: 08/24/2020] [Indexed: 06/11/2023]
Abstract
The diazotrophic cyanobacterium Trichodesmium is thought to be a major contributor to the new N in parts of the oligotrophic, subtropical, and tropical oceans. In this study, physiological and biochemical methods and transcriptome sequencing were used to investigate the influences of ocean acidification (OA) on Trichodesmium erythraeum (T. erythraeum). We presented evidence that OA caused by CO2 slowed the growth rate and physiological activity of T. erythraeum. OA led to reduced development of proportion of the vegetative cells into diazocytes which included up-regulated genes of nitrogen fixation. Reactive oxygen species (ROS) accumulation was increased due to the disruption of photosynthetic electron transport and decrease in antioxidant enzyme activities under acidified conditions. This study showed that OA increased the amounts of (exopolysaccharides) EPS in T. erythraeum, and the key genes of ribose-5-phosphate (R5P) and glycosyltransferases (Tery_3818) were up-regulated. These results provide new insight into how ROS and EPS of T. erythraeum increase in an acidified future ocean to cope with OA-imposed stress.
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Affiliation(s)
- Shijie Wu
- Key Laboratory of Marine Environment and Ecology, Ministry of Education, Ocean University of China, Qingdao, 266100, China
- Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao, 266237, China
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China
| | - Tiezhu Mi
- Key Laboratory of Marine Environment and Ecology, Ministry of Education, Ocean University of China, Qingdao, 266100, China
- Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao, 266237, China
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China
| | - Yu Zhen
- Key Laboratory of Marine Environment and Ecology, Ministry of Education, Ocean University of China, Qingdao, 266100, China
- Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao, 266237, China
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China
| | - Kaiqiang Yu
- Key Laboratory of Marine Environment and Ecology, Ministry of Education, Ocean University of China, Qingdao, 266100, China
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China
| | - Fuwen Wang
- Key Laboratory of Marine Environment and Ecology, Ministry of Education, Ocean University of China, Qingdao, 266100, China
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China
| | - Zhigang Yu
- Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao, 266237, China
- Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education/Institute for Advanced Ocean Study, Ocean University of China, Qingdao, 266100, China
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9
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Boatman TG, Upton GJG, Lawson T, Geider RJ. Projected expansion of Trichodesmium's geographical distribution and increase in growth potential in response to climate change. GLOBAL CHANGE BIOLOGY 2020; 26:6445-6456. [PMID: 32870567 DOI: 10.1111/gcb.15324] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2020] [Revised: 08/17/2020] [Accepted: 08/17/2020] [Indexed: 06/11/2023]
Abstract
Estimates of marine N2 fixation range from 52 to 73 Tg N/year, of which we calculate up to 84% is from Trichodesmium based on previous measurements of nifH gene abundance and our new model of Trichodesmium growth. Here, we assess the likely effects of four major climate change-related abiotic factors on the spatiotemporal distribution and growth potential of Trichodesmium for the last glacial maximum (LGM), the present (2006-2015) and the end of this century (2100) by mapping our model of Trichodesmium growth onto inferred global surface ocean fields of pCO2 , temperature, light and Fe. We conclude that growth rate was severely limited by low pCO2 at the LGM, that current pCO2 levels do not significantly limit Trichodesmium growth and thus, the potential for enhanced growth from future increases in CO2 is small. We also found that the area of the ocean where sea surface temperatures (SST) are within Trichodesmium's thermal niche increased by 32% from the LGM to present, but further increases in SST due to continued global warming will reduce this area by 9%. However, the range reduction at the equator is likely to be offset by enhanced growth associated with expansion of regions with optimal or near optimal Fe and light availability. Between now and 2100, the ocean area of optimal SST and irradiance is projected to increase by 7%, and the ocean area of optimal SST, irradiance and iron is projected to increase by 173%. Given the major contribution of this keystone species to annual N2 fixation and thus pelagic ecology, biogeochemistry and CO2 sequestration, the projected increase in the geographical range for optimal growth could provide a negative feedback to increasing atmospheric CO2 concentrations.
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Affiliation(s)
| | - Graham J G Upton
- Department of Mathematical Sciences, University of Essex, Colchester, UK
| | - Tracy Lawson
- School of Life Sciences, University of Essex, Colchester, UK
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10
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McGee CF. The effects of silver nanoparticles on the microbial nitrogen cycle: a review of the known risks. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:31061-31073. [PMID: 32514926 DOI: 10.1007/s11356-020-09548-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Accepted: 06/01/2020] [Indexed: 05/16/2023]
Abstract
The nitrogen cycle is an integral biogeochemical function for maintaining healthy environments. Nitrogen is a key nutrient that must be continuously replenished through recycling mechanisms to sustain ecosystems, disruption to which can result in compromised ecosystem functioning. Certain stages in the microbial conversion of nitrogen compounds are performed by a limited range of micro-organisms making these key functional species in ecosystems. The growing industrial use of silver nanoparticles (AgNPs) potentially poses significant risks for microbial nitrogen cycling species. AgNPs possess potent antimicrobial properties and are expected to reach a range of natural environments through several routes of exposure. Certain functional nitrogen cycling microbes have been shown to be highly susceptible to AgNP toxicity. The current literature indicates that AgNPs can negatively affect certain nitrogen fixing, nitrifying and denitrifying microbes in vitro. In vivo studies investigating the effect of AgNPs on nitrogen cycling microbial communities and nitrogen transformation rates in soil, sediment and sludge environments have also indicated disruption of these functional processes. This review provides a comprehensive description of the current state of knowledge regarding the toxicity of AgNPs to nitrogen cycling communities. The aim of the review is to highlight the most susceptible stages in the nitrogen cycle and the implications for the affected ecosystems.
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Affiliation(s)
- Conor Francis McGee
- Department of Agriculture, Food and the Marine, Cellbridge, Co. Kildare, Ireland.
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11
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Breton S, Jouhet J, Guyet U, Gros V, Pittera J, Demory D, Partensky F, Doré H, Ratin M, Maréchal E, Nguyen NA, Garczarek L, Six C. Unveiling membrane thermoregulation strategies in marine picocyanobacteria. THE NEW PHYTOLOGIST 2020; 225:2396-2410. [PMID: 31591719 DOI: 10.1111/nph.16239] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 09/29/2019] [Indexed: 05/23/2023]
Abstract
The wide latitudinal distribution of marine Synechococcus cyanobacteria partly relies on the differentiation of lineages adapted to distinct thermal environments. Membranes are highly thermosensitive cell components, and the ability to modulate their fluidity can be critical for the fitness of an ecotype in a particular thermal niche. We compared the thermophysiology of Synechococcus strains representative of major temperature ecotypes in the field. We measured growth, photosynthetic capacities and membrane lipidome variations. We carried out a metagenomic analysis of stations of the Tara Oceans expedition to describe the latitudinal distribution of the lipid desaturase genes in the oceans. All strains maintained efficient photosynthetic capacities over their different temperature growth ranges. Subpolar and cold temperate strains showed enhanced capacities for lipid monodesaturation at low temperature thanks to an additional, poorly regiospecific Δ9-desaturase. By contrast, tropical and warm temperate strains displayed moderate monodesaturation capacities but high proportions of double unsaturations in response to cold, thanks to regiospecific Δ12-desaturases. The desaturase genes displayed specific distributions directly related to latitudinal variations in ocean surface temperature. This study highlights the critical importance of membrane fluidity modulation by desaturases in the adaptive strategies of Synechococcus cyanobacteria during the colonization of novel thermal niches.
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Affiliation(s)
- Solène Breton
- Sorbonne Université, Centre National de la Recherche Scientifique, UMR 7144 Adaptation et Diversité en Milieu Marin (AD2M), Ecology of Marine Plankton (ECOMAP) Team, Station Biologique de Roscoff (SBR), 29680, Roscoff, France
| | - Juliette Jouhet
- Laboratoire de Physiologie Cellulaire et Végétale, Unité mixe de recherche 5168 CNRS, CEA, INRA, Université Grenoble Alpes, IRIG, CEA Grenoble, 17, rue des Martyrs, 38000, Grenoble, France
| | - Ulysse Guyet
- Sorbonne Université, Centre National de la Recherche Scientifique, UMR 7144 Adaptation et Diversité en Milieu Marin (AD2M), Ecology of Marine Plankton (ECOMAP) Team, Station Biologique de Roscoff (SBR), 29680, Roscoff, France
| | - Valérie Gros
- Laboratoire de Physiologie Cellulaire et Végétale, Unité mixe de recherche 5168 CNRS, CEA, INRA, Université Grenoble Alpes, IRIG, CEA Grenoble, 17, rue des Martyrs, 38000, Grenoble, France
| | - Justine Pittera
- Sorbonne Université, Centre National de la Recherche Scientifique, UMR 7144 Adaptation et Diversité en Milieu Marin (AD2M), Ecology of Marine Plankton (ECOMAP) Team, Station Biologique de Roscoff (SBR), 29680, Roscoff, France
| | - David Demory
- School of Biology, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Frédéric Partensky
- Sorbonne Université, Centre National de la Recherche Scientifique, UMR 7144 Adaptation et Diversité en Milieu Marin (AD2M), Ecology of Marine Plankton (ECOMAP) Team, Station Biologique de Roscoff (SBR), 29680, Roscoff, France
| | - Hugo Doré
- Sorbonne Université, Centre National de la Recherche Scientifique, UMR 7144 Adaptation et Diversité en Milieu Marin (AD2M), Ecology of Marine Plankton (ECOMAP) Team, Station Biologique de Roscoff (SBR), 29680, Roscoff, France
| | - Morgane Ratin
- Sorbonne Université, Centre National de la Recherche Scientifique, UMR 7144 Adaptation et Diversité en Milieu Marin (AD2M), Ecology of Marine Plankton (ECOMAP) Team, Station Biologique de Roscoff (SBR), 29680, Roscoff, France
| | - Eric Maréchal
- Laboratoire de Physiologie Cellulaire et Végétale, Unité mixe de recherche 5168 CNRS, CEA, INRA, Université Grenoble Alpes, IRIG, CEA Grenoble, 17, rue des Martyrs, 38000, Grenoble, France
| | - Ngoc An Nguyen
- Sorbonne Université, Centre National de la Recherche Scientifique, UMR 7144 Adaptation et Diversité en Milieu Marin (AD2M), Ecology of Marine Plankton (ECOMAP) Team, Station Biologique de Roscoff (SBR), 29680, Roscoff, France
| | - Laurence Garczarek
- Sorbonne Université, Centre National de la Recherche Scientifique, UMR 7144 Adaptation et Diversité en Milieu Marin (AD2M), Ecology of Marine Plankton (ECOMAP) Team, Station Biologique de Roscoff (SBR), 29680, Roscoff, France
| | - Christophe Six
- Sorbonne Université, Centre National de la Recherche Scientifique, UMR 7144 Adaptation et Diversité en Milieu Marin (AD2M), Ecology of Marine Plankton (ECOMAP) Team, Station Biologique de Roscoff (SBR), 29680, Roscoff, France
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12
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Gardner JJ, Hodge BMS, Boyle NR. Multiscale Multiobjective Systems Analysis (MiMoSA): an advanced metabolic modeling framework for complex systems. Sci Rep 2019; 9:16948. [PMID: 31740694 PMCID: PMC6861322 DOI: 10.1038/s41598-019-53188-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Accepted: 10/29/2019] [Indexed: 12/11/2022] Open
Abstract
In natural environments, cells live in complex communities and experience a high degree of heterogeneity internally and in the environment. Even in 'ideal' laboratory environments, cells can experience a high degree of heterogeneity in their environments. Unfortunately, most of the metabolic modeling approaches that are currently used assume ideal conditions and that each cell is identical, limiting their application to pure cultures in well-mixed vessels. Here we describe our development of Multiscale Multiobjective Systems Analysis (MiMoSA), a metabolic modeling approach that can track individual cells in both space and time, track the diffusion of nutrients and light and the interaction of cells with each other and the environment. As a proof-of concept study, we used MiMoSA to model the growth of Trichodesmium erythraeum, a filamentous diazotrophic cyanobacterium which has cells with two distinct metabolic modes. The use of MiMoSA significantly improves our ability to predictively model metabolic changes and phenotype in more complex cell cultures.
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Affiliation(s)
- Joseph J Gardner
- Chemical & Biological Engineering, Colorado School of Mines, 1613 Illinois St., Golden, CO, 80403, USA
| | - Bri-Mathias S Hodge
- Chemical & Biological Engineering, Colorado School of Mines, 1613 Illinois St., Golden, CO, 80403, USA.,National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO, 80401, USA.,Electrical, Computer and Energy Engineering, 425 UCB, University of Colorado, Boulder, CO, 80309, USA
| | - Nanette R Boyle
- Chemical & Biological Engineering, Colorado School of Mines, 1613 Illinois St., Golden, CO, 80403, USA.
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13
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Luo YW, Shi D, Kranz SA, Hopkinson BM, Hong H, Shen R, Zhang F. Reduced nitrogenase efficiency dominates response of the globally important nitrogen fixer Trichodesmium to ocean acidification. Nat Commun 2019; 10:1521. [PMID: 30944323 PMCID: PMC6447586 DOI: 10.1038/s41467-019-09554-7] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2018] [Accepted: 03/19/2019] [Indexed: 12/25/2022] Open
Abstract
The response of the prominent marine dinitrogen (N2)-fixing cyanobacteria Trichodesmium to ocean acidification (OA) is critical to understanding future oceanic biogeochemical cycles. Recent studies have reported conflicting findings on the effect of OA on growth and N2 fixation of Trichodesmium. Here, we quantitatively analyzed experimental data on how Trichodesmium reallocated intracellular iron and energy among key cellular processes in response to OA, and integrated the findings to construct an optimality-based cellular model. The model results indicate that Trichodesmium growth rate decreases under OA primarily due to reduced nitrogenase efficiency. The downregulation of the carbon dioxide (CO2)-concentrating mechanism under OA has little impact on Trichodesmium, and the energy demand of anti-stress responses to OA has a moderate negative effect. We predict that if anthropogenic CO2 emissions continue to rise, OA could reduce global N2 fixation potential of Trichodesmium by 27% in this century, with the largest decrease in iron-limiting regions.
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Affiliation(s)
- Ya-Wei Luo
- State Key Laboratory of Marine Environmental Science and College of Ocean and Earth Sciences, Xiamen University, 361102, Xiamen, Fujian, China.
| | - Dalin Shi
- State Key Laboratory of Marine Environmental Science and College of the Environment and Ecology, Xiamen University, 361102, Xiamen, Fujian, China.
| | - Sven A Kranz
- Department of Earth, Ocean and Atmospheric Science, Florida State University, Tallahassee, FL, 32306, USA
| | - Brian M Hopkinson
- Department of Marine Sciences, University of Georgia, Athens, GA, 30602, USA
| | - Haizheng Hong
- State Key Laboratory of Marine Environmental Science and College of the Environment and Ecology, Xiamen University, 361102, Xiamen, Fujian, China
| | - Rong Shen
- State Key Laboratory of Marine Environmental Science and College of the Environment and Ecology, Xiamen University, 361102, Xiamen, Fujian, China
| | - Futing Zhang
- State Key Laboratory of Marine Environmental Science and College of the Environment and Ecology, Xiamen University, 361102, Xiamen, Fujian, China
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14
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Cheng K, Frenken T, Brussaard CPD, Van de Waal DB. Cyanophage Propagation in the Freshwater Cyanobacterium Phormidium Is Constrained by Phosphorus Limitation and Enhanced by Elevated pCO 2. Front Microbiol 2019; 10:617. [PMID: 30984143 PMCID: PMC6449453 DOI: 10.3389/fmicb.2019.00617] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Accepted: 03/11/2019] [Indexed: 11/17/2022] Open
Abstract
Intensification of human activities has led to changes in the availabilities of CO2 and nutrients in freshwater ecosystems, which may greatly alter the physiological status of phytoplankton. Viruses require hosts for their reproduction and shifts in phytoplankton host physiology through global environmental change may thus affect viral infections as well. Various studies have investigated the impacts of single environmental factors on phytoplankton virus propagation, yet little is known about the impacts of multiple factors, particularly in freshwater systems. We therefore tested the combined effects of phosphorus limitation and elevated pCO2 on the propagation of a cyanophage infecting a freshwater cyanobacterium. To this end, we cultured Phormidium in P-limited chemostats under ambient (400 μatm) and elevated (800 μatm) pCO2 at growth rates of 0.6, 0.3, and 0.05 d-1. Host C:P ratios generally increased with strengthened P-limitation and with elevated pCO2. Upon host steady state conditions, virus growth characteristics were obtained in separate infection assays where hosts were infected by the double-stranded DNA cyanophage PP. Severe P-limitation (host growth 0.05 d-1) led to a 85% decrease in cyanophage production rate and a 73% decrease in burst size compared to the 0.6 d-1 grown P-limited cultures. Elevated pCO2 induced a 96% increase in cyanophage production rate and a 57% increase in burst size, as well as an 85% shorter latent period as compared to ambient pCO2 at the different host growth rates. In addition, elevated pCO2 caused a decrease in the plaquing efficiency and an increase in the abortion percentage for the 0.05 d-1 P-limited treatment, while the plaquing efficiency increased for the 0.6 d-1 P-limited cultures. Together, our results demonstrate interactive effects of elevated pCO2 and P-limitation on cyanophage propagation, and show that viral propagation is generally constrained by P-limitation but enhanced with elevated pCO2. Our findings indicate that global change will likely have a severe impact on virus growth characteristics and thereby on the control of cyanobacterial hosts in freshwater ecosystems.
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Affiliation(s)
- Kai Cheng
- Hubei Key Laboratory of Ecological Restoration for River-Lakes and Algal Utilization, College of Resources and Environmental Engineering, Hubei University of Technology, Wuhan, China.,Department of Aquatic Ecology, Netherlands Institute of Ecology, Wageningen, Netherlands
| | - Thijs Frenken
- Department of Aquatic Ecology, Netherlands Institute of Ecology, Wageningen, Netherlands
| | - Corina P D Brussaard
- Department of Marine Microbiology and Biogeochemistry, Royal Netherlands Institute for Sea Research and University of Utrecht, Texel, Netherlands
| | - Dedmer B Van de Waal
- Department of Aquatic Ecology, Netherlands Institute of Ecology, Wageningen, Netherlands
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15
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Boatman TG, Davey PA, Lawson T, Geider RJ. CO2 modulation of the rates of photosynthesis and light-dependent O2 consumption in Trichodesmium. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:589-597. [PMID: 30380078 PMCID: PMC6322564 DOI: 10.1093/jxb/ery368] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2018] [Accepted: 10/15/2018] [Indexed: 05/28/2023]
Abstract
As atmospheric CO2 concentrations increase, so too does the dissolved CO2 and HCO3- concentrations in the world's oceans. There are still many uncertainties regarding the biological response of key groups of organisms to these changing conditions, which is crucial for predicting future species distributions, primary productivity rates, and biogeochemical cycling. In this study, we established the relationship between gross photosynthetic O2 evolution and light-dependent O2 consumption in Trichodesmium erythraeum IMS101 acclimated to three targeted pCO2 concentrations (180 µmol mol-1=low-CO2, 380 µmol mol-1=mid-CO2, and 720 µmol mol-1=high-CO2). We found that biomass- (carbon) specific, light-saturated maximum net O2 evolution rates (PnC,max) and acclimated growth rates increased from low- to mid-CO2, but did not differ significantly between mid- and high-CO2. Dark respiration rates were five times higher than required to maintain cellular metabolism, suggesting that respiration provides a substantial proportion of the ATP and reductant for N2 fixation. Oxygen uptake increased linearly with gross O2 evolution across light intensities ranging from darkness to 1100 µmol photons m-2 s-1. The slope of this relationship decreased with increasing CO2, which we attribute to the increased energetic cost of operating the carbon-concentrating mechanism at lower CO2 concentrations. Our results indicate that net photosynthesis and growth of T. erythraeum IMS101 would have been severely CO2 limited at the last glacial maximum, but that the direct effect of future increases of CO2 may only cause marginal increases in growth.
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Affiliation(s)
- Tobias G Boatman
- School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, UK
- Department of Chemical Engineering, Imperial College London, South Kensington, London, UK
| | - Phillip A Davey
- School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, UK
| | - Tracy Lawson
- School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, UK
| | - Richard J Geider
- School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, UK
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16
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Demory D, Baudoux AC, Monier A, Simon N, Six C, Ge P, Rigaut-Jalabert F, Marie D, Sciandra A, Bernard O, Rabouille S. Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean. ISME JOURNAL 2018; 13:132-146. [PMID: 30116039 DOI: 10.1038/s41396-018-0248-0] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2017] [Revised: 05/15/2018] [Accepted: 06/11/2018] [Indexed: 11/09/2022]
Abstract
Photosynthetic picoeukaryotesx in the genus Micromonas show among the widest latitudinal distributions on Earth, experiencing large thermal gradients from poles to tropics. Micromonas comprises at least four different species often found in sympatry. While such ubiquity might suggest a wide thermal niche, the temperature response of the different strains is still unexplored, leaving many questions as for their ecological success over such diverse ecosystems. Using combined experiments and theory, we characterize the thermal response of eleven Micromonas strains belonging to four species. We demonstrate that the variety of specific responses to temperature in the Micromonas genus makes this environmental factor an ideal marker to describe its global distribution and diversity. We then propose a diversity model for the genus Micromonas, which proves to be representative of the whole phytoplankton diversity. This prominent primary producer is therefore a sentinel organism of phytoplankton diversity at the global scale. We use the diversity within Micromonas to anticipate the potential impact of global warming on oceanic phytoplankton. We develop a dynamic, adaptive model and run forecast simulations, exploring a range of adaptation time scales, to probe the likely responses to climate change. Results stress how biodiversity erosion depends on the ability of organisms to adapt rapidly to temperature increase.
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Affiliation(s)
- David Demory
- School of Biology, Georgia Institute of Technology, Atlanta, GA, USA. .,Sorbonne University, UPMC Univ Paris 06, INSU-CNRS, UMR 7093, Laboratoire Océanographique de Villefranche, 181 Chemin du Lazaret, 06230, Villefranche-sur-mer, France. .,University of Côte d'Azur, INRIA, BIOCORE team, BP93, 06902, Sophia-Antipolis Cedex, France.
| | - Anne-Claire Baudoux
- Sorbonne University, UPMC Univ Paris 06, CNRS, UMR 7144, Station Biologique de Roscoff, 29680, Roscoff, France
| | - Adam Monier
- Biosciences, University of Exeter, Exeter, UK
| | - Nathalie Simon
- Sorbonne University, UPMC Univ Paris 06, CNRS, UMR 7144, Station Biologique de Roscoff, 29680, Roscoff, France
| | - Christophe Six
- Sorbonne University, UPMC Univ Paris 06, CNRS, UMR 7144, Station Biologique de Roscoff, 29680, Roscoff, France
| | - Pei Ge
- Sorbonne University, UPMC Univ Paris 06, CNRS, UMR 7144, Station Biologique de Roscoff, 29680, Roscoff, France
| | - Fabienne Rigaut-Jalabert
- Sorbonne University, UPMC Univ Paris 06, CNRS, Fédération de Recherche FR2424, Station Biologique de Roscoff, 29680, Roscoff, France
| | - Dominique Marie
- Sorbonne University, UPMC Univ Paris 06, CNRS, UMR 7144, Station Biologique de Roscoff, 29680, Roscoff, France
| | - Antoine Sciandra
- Sorbonne University, UPMC Univ Paris 06, INSU-CNRS, UMR 7093, Laboratoire Océanographique de Villefranche, 181 Chemin du Lazaret, 06230, Villefranche-sur-mer, France
| | - Olivier Bernard
- University of Côte d'Azur, INRIA, BIOCORE team, BP93, 06902, Sophia-Antipolis Cedex, France.
| | - Sophie Rabouille
- Sorbonne University, UPMC Univ Paris 06, INSU-CNRS, UMR 7093, Laboratoire Océanographique de Villefranche, 181 Chemin du Lazaret, 06230, Villefranche-sur-mer, France.
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17
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Boatman TG, Mangan NM, Lawson T, Geider RJ. Inorganic carbon and pH dependency of photosynthetic rates in Trichodesmium. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:3651-3660. [PMID: 29659983 PMCID: PMC6022602 DOI: 10.1093/jxb/ery141] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Accepted: 04/09/2018] [Indexed: 05/12/2023]
Abstract
Increasing atmospheric CO2 concentrations are leading to increases in dissolved CO2 and HCO3- concentrations and decreases in pH and CO32- in the world's oceans. There remain many uncertainties as to the magnitude of biological responses of key organisms to these chemical changes. In this study, we established the relationship between photosynthetic carbon fixation rates and pH, CO2, and HCO3- concentrations in the diazotroph, Trichodesmium erythraeum IMS101. Inorganic 14C-assimilation was measured in TRIS-buffered artificial seawater medium where the absolute and relative concentrations of CO2, pH, and HCO3- were manipulated. First, we varied the total dissolved inorganic carbon concentration (TIC) (<0 to ~5 mM) at constant pH, so that ratios of CO2 and HCO3- remained relatively constant. Second, we varied pH (~8.54 to 7.52) at constant TIC, so that CO2 increased whilst HCO3- declined. We found that 14C-assimilation could be described by the same function of CO2 for both approaches, but it showed different dependencies on HCO3- when pH was varied at constant TIC than when TIC was varied at constant pH. A numerical model of the carbon-concentrating mechanism (CCM) of Trichodesmium showed that carboxylation rates are modulated by HCO3- and pH. The decrease in assimilation of inorganic carbon (Ci) at low CO2, when TIC was varied, was due to HCO3- uptake limitation of the carboxylation rate. Conversely, when pH was varied, Ci assimilation declined due to a high-pH mediated increase in HCO3- and CO2 leakage rates, potentially coupled to other processes (uncharacterised within the CCM model) that restrict Ci assimilation rates under high-pH conditions.
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Affiliation(s)
- Tobias G Boatman
- School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, UK
| | - Niall M Mangan
- Department of Engineering Sciences and Applied Mathematics, Northwestern University, Evanston, Illinois, USA
| | - Tracy Lawson
- School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, UK
| | - Richard J Geider
- School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, UK
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18
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Boatman TG, Davey PA, Lawson T, Geider RJ. The physiological cost of diazotrophy for Trichodesmium erythraeum IMS101. PLoS One 2018; 13:e0195638. [PMID: 29641568 PMCID: PMC5895029 DOI: 10.1371/journal.pone.0195638] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Accepted: 03/26/2018] [Indexed: 11/24/2022] Open
Abstract
Trichodesmium plays a significant role in the oligotrophic oceans, fixing nitrogen in an area corresponding to half of the Earth's surface, representing up to 50% of new production in some oligotrophic tropical and subtropical oceans. Whilst Trichodesmium blooms at the surface exhibit a strong dependence on diazotrophy, colonies at depth or at the surface after a mixing event could be utilising additional N-sources. We conducted experiments to establish how acclimation to varying N-sources affects the growth, elemental composition, light absorption coefficient, N2 fixation, PSII electron transport rate and the relationship between net and gross photosynthetic O2 exchange in T. erythraeum IMS101. To do this, cultures were acclimated to growth medium containing NH4+ and NO3- (replete concentrations) or N2 only (diazotrophic control). The light dependencies of O2 evolution and O2 uptake were measured using membrane inlet mass spectrometry (MIMS), while PSII electron transport rates were measured from fluorescence light curves (FLCs). We found that at a saturating light intensity, Trichodesmium growth was ~ 10% and 13% lower when grown on N2 than with NH4+ and NO3-, respectively. Oxygen uptake increased linearly with net photosynthesis across all light intensities ranging from darkness to 1100 μmol photons m-2 s-1. The maximum rates and initial slopes of light response curves for C-specific gross and net photosynthesis and the slope of the relationship between gross and net photosynthesis increased significantly under non-diazotrophic conditions. We attribute these observations to a reduced expenditure of reductant and ATP for nitrogenase activity under non-diazotrophic conditions which allows NADPH and ATP to be re-directed to CO2 fixation and/or biosynthesis. The energy and reductant conserved through utilising additional N-sources could enhance Trichodesmium's productivity and growth and have major implications for its role in ocean C and N cycles.
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Affiliation(s)
- Tobias G. Boatman
- School of Biological Sciences, University of Essex, Colchester, United Kingdom
| | - Phillip A. Davey
- School of Biological Sciences, University of Essex, Colchester, United Kingdom
| | - Tracy Lawson
- School of Biological Sciences, University of Essex, Colchester, United Kingdom
| | - Richard J. Geider
- School of Biological Sciences, University of Essex, Colchester, United Kingdom
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19
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Boatman TG, Oxborough K, Gledhill M, Lawson T, Geider RJ. An Integrated Response of Trichodesmium erythraeum IMS101 Growth and Photo-Physiology to Iron, CO 2, and Light Intensity. Front Microbiol 2018; 9:624. [PMID: 29755417 PMCID: PMC5932364 DOI: 10.3389/fmicb.2018.00624] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Accepted: 03/19/2018] [Indexed: 11/13/2022] Open
Abstract
We have assessed how varying CO2 (180, 380, and 720 μatm) and growth light intensity (40 and 400 μmol photons m-2 s-1) affected Trichodesmium erythraeum IMS101 growth and photophysiology over free iron (Fe') concentrations between 20 and 9,600 pM. We found significant iron dependencies of growth rate and the initial slope and maximal relative PSII electron transport rates (rPm). Under iron-limiting concentrations, high-light increased growth rates and rPm; possibly indicating a lower allocation of resources to iron-containing photosynthetic proteins. Higher CO2 increased growth rates across all iron concentrations, enabled growth to occur at lower Fe' concentrations, increased rPm and lowered the iron half saturation constants for growth (Km). We attribute these CO2 responses to the operation of the CCM and the ATP spent/saved for CO2 uptake and transport at low and high CO2, respectively. It seems reasonable to conclude that T. erythraeum IMS101 can exhibit a high degree of phenotypic plasticity in response to CO2, light intensity and iron-limitation. These results are important given predictions of increased dissolved CO2 and water column stratification (i.e., higher light exposures) over the coming decades.
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Affiliation(s)
- Tobias G Boatman
- School of Biological Sciences, University of Essex, Colchester, United Kingdom
| | - Kevin Oxborough
- Chelsea Technologies Group Ltd, West Molesey, United Kingdom
| | - Martha Gledhill
- Ocean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, United Kingdom.,GEOMAR, Helmholtz Centre for Ocean Research, Kiel, Germany
| | - Tracy Lawson
- School of Biological Sciences, University of Essex, Colchester, United Kingdom
| | - Richard J Geider
- School of Biological Sciences, University of Essex, Colchester, United Kingdom
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20
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Characterization, genetic regulation and production of cyanobacterial exopolysaccharides and its applicability for heavy metal removal. Carbohydr Polym 2018; 179:228-243. [DOI: 10.1016/j.carbpol.2017.09.091] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Revised: 09/15/2017] [Accepted: 09/26/2017] [Indexed: 11/18/2022]
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21
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Low-Décarie E, Boatman TG, Bennett N, Passfield W, Gavalás-Olea A, Siegel P, Geider RJ. Predictions of response to temperature are contingent on model choice and data quality. Ecol Evol 2017; 7:10467-10481. [PMID: 29238568 PMCID: PMC5723626 DOI: 10.1002/ece3.3576] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2017] [Accepted: 10/08/2017] [Indexed: 01/08/2023] Open
Abstract
The equations used to account for the temperature dependence of biological processes, including growth and metabolic rates, are the foundations of our predictions of how global biogeochemistry and biogeography change in response to global climate change. We review and test the use of 12 equations used to model the temperature dependence of biological processes across the full range of their temperature response, including supra- and suboptimal temperatures. We focus on fitting these equations to thermal response curves for phytoplankton growth but also tested the equations on a variety of traits across a wide diversity of organisms. We found that many of the surveyed equations have comparable abilities to fit data and equally high requirements for data quality (number of test temperatures and range of response captured) but lead to different estimates of cardinal temperatures and of the biological rates at these temperatures. When these rate estimates are used for biogeographic predictions, differences between the estimates of even the best-fitting models can exceed the global biological change predicted for a decade of global warming. As a result, studies of the biological response to global changes in temperature must make careful consideration of model selection and of the quality of the data used for parametrizing these models.
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Affiliation(s)
| | | | - Noah Bennett
- School of Biological Sciences University of Essex Colchester UK
| | - Will Passfield
- School of Biological Sciences University of Essex Colchester UK
| | - Antonio Gavalás-Olea
- School of Biological Sciences University of Essex Colchester UK.,Instituto de Investigaciones Marinas (IIM-CSIC) Vigo Spain
| | - Philipp Siegel
- School of Biological Sciences University of Essex Colchester UK
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