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Soroka G, Idiart M, Villavicencio A. Mechanistic role of alpha oscillations in a computational model of working memory. PLoS One 2024; 19:e0296217. [PMID: 38329951 PMCID: PMC10852337 DOI: 10.1371/journal.pone.0296217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Accepted: 12/08/2023] [Indexed: 02/10/2024] Open
Abstract
Brain oscillations are believed to be involved in the different operations necessary to manipulate information during working memory tasks. We propose a mechanistic role for the observed inhibition effect of the alpha rhythm based on its interference with the theta rhythm. Using the Lisman-Idiart model for multi-item working memory, we show that the interaction between these two oscillations is capable of creating a long lasting destructive interference that prevents the cyclic reactivation of neuronal ensembles and, as a consequence, memory maintenance. Additionally, to ensure robustness we propose a modular version of the model and implement oscillations as traveling waves. Using this model, we show that the interactions between theta and gamma determine the allocation of multiple memories in distinct modules, while the interference between theta and alpha disrupts the maintenance of the information already stored in them. The effect of alpha in erasing or blocking storage is robust and seems fairly independent of frequency, as long as it stays within the alpha range. This model helps us to understand why the alpha and theta oscillations, which have close frequency bands, could have opposite roles in working memory.
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Affiliation(s)
- Gustavo Soroka
- Neuroscience Graduate Program, Federal University of Rio Grande do Sul (UFRGS), Porto Alegre, Brazil
| | - Marco Idiart
- Neuroscience Graduate Program, Federal University of Rio Grande do Sul (UFRGS), Porto Alegre, Brazil
- Department of Physics, Institute of Physics, Federal University of Rio Grande do Sul (UFRGS), Porto Alegre, Brazil
| | - Aline Villavicencio
- Department of Computer Science, University of Sheffield, Sheffield, United Kingdom
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2
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Haufler D, Ito S, Koch C, Arkhipov A. Simulations of cortical networks using spatially extended conductance-based neuronal models. J Physiol 2023; 601:3123-3139. [PMID: 36567262 PMCID: PMC10290729 DOI: 10.1113/jp284030] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Accepted: 12/19/2022] [Indexed: 12/27/2022] Open
Abstract
The Hodgkin-Huxley model of action potential generation and propagation, published in the Journal of Physiology in 1952, initiated the field of biophysically detailed computational modelling in neuroscience, which has expanded to encompass a variety of species and components of the nervous system. Here we review the developments in this area with a focus on efforts in the community towards modelling the mammalian neocortex using spatially extended conductance-based neuronal models. The Hodgkin-Huxley formalism and related foundational contributions, such as Rall's cable theory, remain widely used in these efforts to the current day. We argue that at present the field is undergoing a qualitative change due to new very rich datasets describing the composition, connectivity and functional activity of cortical circuits, which are being integrated systematically into large-scale network models. This trend, combined with the accelerating development of convenient software tools supporting such complex modelling projects, is giving rise to highly detailed models of the cortex that are extensively constrained by the data, enabling computational investigation of a multitude of questions about cortical structure and function.
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Affiliation(s)
| | - Shinya Ito
- Mindscope Program, Allen Institute, Seattle, 98109
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3
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Fontanier V, Sarazin M, Stoll FM, Delord B, Procyk E. Inhibitory control of frontal metastability sets the temporal signature of cognition. eLife 2022; 11:63795. [PMID: 35635439 PMCID: PMC9200403 DOI: 10.7554/elife.63795] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Accepted: 05/27/2022] [Indexed: 11/13/2022] Open
Abstract
Cortical dynamics are organized over multiple anatomical and temporal scales. The mechanistic origin of the temporal organization and its contribution to cognition remain unknown. Here we demonstrate the cause of this organization by studying a specific temporal signature (time constant and latency) of neural activity. In monkey frontal areas, recorded during flexible decisions, temporal signatures display specific area-dependent ranges, as well as anatomical and cell-type distributions. Moreover, temporal signatures are functionally adapted to behaviorally relevant timescales. Fine-grained biophysical network models, constrained to account for experimentally observed temporal signatures, reveal that after-hyperpolarization potassium and inhibitory GABA-B conductances critically determine areas' specificity. They mechanistically account for temporal signatures by organizing activity into metastable states, with inhibition controlling state stability and transitions. As predicted by models, state durations non-linearly scale with temporal signatures in monkey, matching behavioral timescales. Thus, local inhibitory-controlled metastability constitutes the dynamical core specifying the temporal organization of cognitive functions in frontal areas.
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Affiliation(s)
| | - Matthieu Sarazin
- Institute of Intelligent Systems and Robotics (ISIR) - UMR 7222, Sorbonne Université, CNRS, Paris, France
| | - Frederic M Stoll
- Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, United States
| | - Bruno Delord
- Institute of Intelligent Systems and Robotics (ISIR) - UMR 7222, Sorbonne Université, CNRS, Paris, France
| | - Emmanuel Procyk
- Stem Cell and Brain Research Institute U1208, Inserm, Lyon, France
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4
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Friedman NP, Robbins TW. The role of prefrontal cortex in cognitive control and executive function. Neuropsychopharmacology 2022; 47:72-89. [PMID: 34408280 PMCID: PMC8617292 DOI: 10.1038/s41386-021-01132-0] [Citation(s) in RCA: 470] [Impact Index Per Article: 156.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Revised: 07/20/2021] [Accepted: 07/22/2021] [Indexed: 12/30/2022]
Abstract
Concepts of cognitive control (CC) and executive function (EF) are defined in terms of their relationships with goal-directed behavior versus habits and controlled versus automatic processing, and related to the functions of the prefrontal cortex (PFC) and related regions and networks. A psychometric approach shows unity and diversity in CC constructs, with 3 components in the most commonly studied constructs: general or common CC and components specific to mental set shifting and working memory updating. These constructs are considered against the cellular and systems neurobiology of PFC and what is known of its functional neuroanatomical or network organization based on lesioning, neurochemical, and neuroimaging approaches across species. CC is also considered in the context of motivation, as "cool" and "hot" forms. Its Common CC component is shown to be distinct from general intelligence (g) and closely related to response inhibition. Impairments in CC are considered as possible causes of psychiatric symptoms and consequences of disorders. The relationships of CC with the general factor of psychopathology (p) and dimensional constructs such as impulsivity in large scale developmental and adult populations are considered, as well as implications for genetic studies and RDoC approaches to psychiatric classification.
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Affiliation(s)
- Naomi P Friedman
- Department of Psychology & Neuroscience and Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, CO, USA.
| | - Trevor W Robbins
- Department of Psychology and Behavioural and Clinical Neuroscience Institute, University of Cambridge, Cambridge, UK.
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5
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Sarazin MXB, Victor J, Medernach D, Naudé J, Delord B. Online Learning and Memory of Neural Trajectory Replays for Prefrontal Persistent and Dynamic Representations in the Irregular Asynchronous State. Front Neural Circuits 2021; 15:648538. [PMID: 34305535 PMCID: PMC8298038 DOI: 10.3389/fncir.2021.648538] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Accepted: 05/31/2021] [Indexed: 11/13/2022] Open
Abstract
In the prefrontal cortex (PFC), higher-order cognitive functions and adaptive flexible behaviors rely on continuous dynamical sequences of spiking activity that constitute neural trajectories in the state space of activity. Neural trajectories subserve diverse representations, from explicit mappings in physical spaces to generalized mappings in the task space, and up to complex abstract transformations such as working memory, decision-making and behavioral planning. Computational models have separately assessed learning and replay of neural trajectories, often using unrealistic learning rules or decoupling simulations for learning from replay. Hence, the question remains open of how neural trajectories are learned, memorized and replayed online, with permanently acting biological plasticity rules. The asynchronous irregular regime characterizing cortical dynamics in awake conditions exerts a major source of disorder that may jeopardize plasticity and replay of locally ordered activity. Here, we show that a recurrent model of local PFC circuitry endowed with realistic synaptic spike timing-dependent plasticity and scaling processes can learn, memorize and replay large-size neural trajectories online under asynchronous irregular dynamics, at regular or fast (sped-up) timescale. Presented trajectories are quickly learned (within seconds) as synaptic engrams in the network, and the model is able to chunk overlapping trajectories presented separately. These trajectory engrams last long-term (dozen hours) and trajectory replays can be triggered over an hour. In turn, we show the conditions under which trajectory engrams and replays preserve asynchronous irregular dynamics in the network. Functionally, spiking activity during trajectory replays at regular timescale accounts for both dynamical coding with temporal tuning in individual neurons, persistent activity at the population level, and large levels of variability consistent with observed cognitive-related PFC dynamics. Together, these results offer a consistent theoretical framework accounting for how neural trajectories can be learned, memorized and replayed in PFC networks circuits to subserve flexible dynamic representations and adaptive behaviors.
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Affiliation(s)
- Matthieu X B Sarazin
- Institut des Systèmes Intelligents et de Robotique, CNRS, Inserm, Sorbonne Université, Paris, France
| | - Julie Victor
- CEA Paris-Saclay, CNRS, NeuroSpin, Saclay, France
| | - David Medernach
- Institut des Systèmes Intelligents et de Robotique, CNRS, Inserm, Sorbonne Université, Paris, France
| | - Jérémie Naudé
- Neuroscience Paris Seine - Institut de biologie Paris Seine, CNRS, Inserm, Sorbonne Université, Paris, France
| | - Bruno Delord
- Institut des Systèmes Intelligents et de Robotique, CNRS, Inserm, Sorbonne Université, Paris, France
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6
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Pfeiffer P, Egorov AV, Lorenz F, Schleimer JH, Draguhn A, Schreiber S. Clusters of cooperative ion channels enable a membrane-potential-based mechanism for short-term memory. eLife 2020; 9:49974. [PMID: 32031523 PMCID: PMC7007218 DOI: 10.7554/elife.49974] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2019] [Accepted: 01/14/2020] [Indexed: 12/11/2022] Open
Abstract
Across biological systems, cooperativity between proteins enables fast actions, supra-linear responses, and long-lasting molecular switches. In the nervous system, however, the function of cooperative interactions between voltage-dependent ionic channels remains largely unknown. Based on mathematical modeling, we here demonstrate that clusters of strongly cooperative ion channels can plausibly form bistable conductances. Consequently, clusters are permanently switched on by neuronal spiking, switched off by strong hyperpolarization, and remain in their state for seconds after stimulation. The resulting short-term memory of the membrane potential allows to generate persistent firing when clusters of cooperative channels are present together with non-cooperative spike-generating conductances. Dynamic clamp experiments in rodent cortical neurons confirm that channel cooperativity can robustly induce graded persistent activity - a single-cell based, multistable mnemonic firing mode experimentally observed in several brain regions. We therefore propose that ion channel cooperativity constitutes an efficient cell-intrinsic implementation for short-term memories at the voltage level.
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Affiliation(s)
- Paul Pfeiffer
- Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Berlin, Germany.,Bernstein Center for Computational Neuroscience, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Alexei V Egorov
- Institute of Physiology and Pathophysiology, Heidelberg University, Heidelberg, Germany
| | - Franziska Lorenz
- Institute of Physiology and Pathophysiology, Heidelberg University, Heidelberg, Germany
| | - Jan-Hendrik Schleimer
- Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Berlin, Germany.,Bernstein Center for Computational Neuroscience, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Andreas Draguhn
- Institute of Physiology and Pathophysiology, Heidelberg University, Heidelberg, Germany
| | - Susanne Schreiber
- Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Berlin, Germany.,Bernstein Center for Computational Neuroscience, Humboldt-Universität zu Berlin, Berlin, Germany
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7
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Cabessa J, Villa AEP. Attractor dynamics of a Boolean model of a brain circuit controlled by multiple parameters. CHAOS (WOODBURY, N.Y.) 2018; 28:106318. [PMID: 30384642 DOI: 10.1063/1.5042312] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Accepted: 08/29/2018] [Indexed: 06/08/2023]
Abstract
Studies of Boolean recurrent neural networks are briefly introduced with an emphasis on the attractor dynamics determined by the sequence of distinct attractors observed in the limit cycles. We apply this framework to a simplified model of the basal ganglia-thalamocortical circuit where each brain area is represented by a "neuronal" node in a directed graph. Control parameters ranging from neuronal excitability that affects all cells to targeted local connections modified by a new adaptive plasticity rule, and the regulation of the interactive feedback affecting the external input stream of information, allow the network dynamics to switch between stable domains delimited by highly discontinuous boundaries and reach very high levels of complexity with specific configurations. The significance of this approach with regard to brain circuit studies is briefly discussed.
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Affiliation(s)
- Jérémie Cabessa
- Laboratory of Mathematical Economics (LEMMA), Université Paris 2-Panthéon-Assas, 75005 Paris, France
| | - Alessandro E P Villa
- Neuroheuristic Research Group, University of Lausanne, CH-1015 Lausanne, Switzerland
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