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Vidal JL, Clavijo V, Castellanos LR, Kathiresan J, Kumar AM, Mehta K, Chaparro-Gutiérrez JJ. Multidrug-resistant Salmonella spp. in fecal samples of pigs with suspected salmonellosis in Antioquia, Colombia, 2019-2021. Rev Panam Salud Publica 2023; 47:e46. [PMID: 37082540 PMCID: PMC10105592 DOI: 10.26633/rpsp.2023.46] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Accepted: 12/21/2022] [Indexed: 04/22/2023] Open
Abstract
Objectives To determine the proportion of Salmonella enterica in fecal samples of live pigs with suspected salmonellosis analyzed at the diagnostic unit of the University of Antioquia, Colombia between 2019 and 2021, and examine the serotypes and antimicrobial resistance patterns. Methods This was a laboratory-based cross-sectional study of routine data on fecal samples received from pig farms in all nine subregions of Antioquia state, Colombia. Salmonella spp. detection at the university is done using enrichment, selective culture, and polymerase chain reaction. Serotypes were identified using the Kauffmann-White scheme and isolates were tested for antimicrobial susceptibility using broth microdilution. Results Of 653 samples tested, 149 (23%) were positive for S. enterica. Nine serotypes were identified. The most common were Salmonella Typhimurium (56%) and its monophasic variant (35%). Resistance to ampicillin (70%) was most frequently observed, followed by ciprofloxacin (55%), and sulfamethoxazole-trimethoprim (52%). No isolates were resistant to amikacin and gentamicin. Multidrug resistance (resistance to ≥ 3 classes of antibiotics) was observed in 61 (44%) isolates. Multidrug resistance was highest in S. Typhimurium (57%) compared with the other serotypes. Serotype was associated with multidrug resistance (p = 0.01), but age of the pig and sub-region were not. Conclusions The proportion of Salmonella spp. and the associated high levels of multidrug resistance are of concern and may indicate irrational use of antimicrobials and poor management practices in pig production systems in the region. Strengthened surveillance is needed to monitor and improve farm management practices and the use of antimicrobials in farms in Colombia.
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Affiliation(s)
- Juana L. Vidal
- Faculty of Agrarian SciencesUniversity of AntioquiaMedellinColombiaFaculty of Agrarian Sciences, University of Antioquia, Medellin, Colombia.
- Juana L. Vidal,
| | - Viviana Clavijo
- Ciencia y tecnologia de Fagos – SciphageBogotaColombiaCiencia y tecnologia de Fagos – Sciphage, Bogota, Colombia.
| | - Luis R. Castellanos
- Quadram Institute Bioscience, NorwichNorwichUnited Kingdom of Great Britain and Northern IrelandQuadram Institute Bioscience, Norwich, United Kingdom of Great Britain and Northern Ireland.
| | - Jeyashree Kathiresan
- Indian Council of Medical ResearchNational Institute of EpidemiologyChennaiIndiaIndian Council of Medical Research, National Institute of Epidemiology, Chennai, India.
| | - Ajay M.V. Kumar
- International Union Against Tuberculosis and Lung DiseaseParisFranceInternational Union Against Tuberculosis and Lung Disease, Paris, France.
| | - Kedar Mehta
- GMERS Medical CollegeGotri, VadodaraGujaratIndiaGMERS Medical College, Gotri, Vadodara, Gujarat, India.
| | - Jenny J. Chaparro-Gutiérrez
- Faculty of Agrarian SciencesUniversity of AntioquiaMedellinColombiaFaculty of Agrarian Sciences, University of Antioquia, Medellin, Colombia.
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Parada J, Galas M, Faccone D, Tamiozzo P, Carranza A. Antibiotic resistance and associated resistance determinants in different Salmonella enterica serovars isolated from pigs in Argentina. Vet World 2022; 15:1215-1220. [PMID: 35765497 PMCID: PMC9210835 DOI: 10.14202/vetworld.2022.1215-1220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Accepted: 03/16/2022] [Indexed: 11/16/2022] Open
Abstract
Background and Aim: Salmonellosis is one of the most common foodborne diseases in the world, and the increasing antibiotic resistance in Salmonella enterica subsp. enterica recovered from food animals constitutes an important risk from a One Health approach. This study aimed to characterize antibiotic resistance and some of its associated resistance determinants in different S. enterica serovars isolated from pigs in Argentina. Materials and Methods: A retrospective study was conducted on Salmonella strains isolated between 2011 and 2015 from pigs in the Pampean region of Argentina. The antimicrobial susceptibility patterns to 21 antimicrobials and some antibiotic resistance determinants were characterized in 55 Salmonella isolates, representing 58 farms. Results: We identified 56% (n=30) of the strains as multidrug-resistant, where resistance to tetracycline (62%, n=34), ampicillin (53%, n=29), nalidixic acid (53%, n=29), chloramphenicol (33%, n=18), and trimethoprim-sulfamethoxazole (31%, n=17) was most common. The wide range of resistance to ampicillin correlates with the presence of TEM type β-lactamases in the strains. However, high susceptibility was found in the new generation of β-lactams. Fluoroquinolone resistance is a major concern. Most strains with decreased susceptibility to ciprofloxacin showed gyrA mutations and plasmid-mediated quinolone resistance gene qnrB. Conclusion: Here, we identified broad resistance to some antibiotics frequently used in human therapeutics and several easily transferable resistance mechanisms that could endanger public health.
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Affiliation(s)
- Julián Parada
- Department of Animal Pathology, Facultad de Agronomía y Veterinaria, Universidad Nacional de Río Cuarto, Río Cuarto, Córdoba, Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina
| | - Marcelo Galas
- Servicio Antimicrobianos, National and Regional Reference Laboratory in Antimicrobial Resistance, Instituto Nacional de Enfermedades Infecciosas (INEI)-ANLIS "Dr. C. Malbran," Buenos Aires, Argentina; Antimicrobial Resistance Special Program, Communicable Diseases and Environmental Determinants of Health, Pan American Health Organization, Washington, DC, United States of America
| | - Diego Faccone
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina; Servicio Antimicrobianos, National and Regional Reference Laboratory in Antimicrobial Resistance, Instituto Nacional de Enfermedades Infecciosas (INEI)-ANLIS "Dr. C. Malbran," Buenos Aires, Argentina
| | - Pablo Tamiozzo
- Department of Animal Pathology, Facultad de Agronomía y Veterinaria, Universidad Nacional de Río Cuarto, Río Cuarto, Córdoba, Argentina
| | - Alicia Carranza
- Department of Animal Pathology, Facultad de Agronomía y Veterinaria, Universidad Nacional de Río Cuarto, Río Cuarto, Córdoba, Argentina
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Jiang Z, Anwar TM, Peng X, Biswas S, Elbediwi M, Li Y, Fang W, Yue M. Prevalence and antimicrobial resistance of Salmonella recovered from pig-borne food products in Henan, China. Food Control 2021. [DOI: 10.1016/j.foodcont.2020.107535] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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Joaquim P, Herrera M, Dupuis A, Chacana P. Virulence genes and antimicrobial susceptibility in Salmonellaenterica serotypes isolated from swine production in Argentina. Rev Argent Microbiol 2021; 53:233-239. [PMID: 33436274 DOI: 10.1016/j.ram.2020.10.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Revised: 09/04/2020] [Accepted: 10/06/2020] [Indexed: 11/24/2022] Open
Abstract
Salmonella is a worldwide-distributed pathogen that affects both humans and animals and is usually associated with intensive animal production such as poultry and swine. This bacterium carries different virulence genes, whose expression favors its interaction with the host and may influence the course of the infection. Extended usage of antibiotics for metaphylaxis or prophylaxis and as growth promoters favors the emergence of multiresistant Salmonella strains. The aim of this work was to assess the association between the presence of virulence-associated genes and the antimicrobial resistance phenotype in Salmonella isolates obtained from swine intensive and backyard farms in Argentina during 2012-2018. A total of 59 Salmonella strains belonging to several serotypes were studied. All the strains carried the sopB and ssaQ genes, whereas more than 90% of the isolates carried the mgtC, avrA, and siiD genes. Some isolates also carried the bcfC, sodC1, gipA, sopE1 and spvC genes; however, their presence varied among them. Susceptibility to the antibiotics tested was diverse. Isolates from intensive farms were resistant to a larger number of antimicrobials than those from backyard farms and some of the strains showed high virulence potential and extensive antimicrobial resistance profiles. Continuous surveillance is essential to detect the emergence of strains that may represent a significant risk not only for animal production but also for the human population.
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Affiliation(s)
- Patricia Joaquim
- Instituto de Patobiología-UEDD IPVET INTA CONICET, Centro de Investigación en Ciencias Veterinarias y Agronómicas, Instituto Nacional de Tecnologia Agropecuaria, Argentina.
| | | | | | - Pablo Chacana
- Instituto de Patobiología-UEDD IPVET INTA CONICET, Centro de Investigación en Ciencias Veterinarias y Agronómicas, Instituto Nacional de Tecnologia Agropecuaria, Argentina
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Phenotypic and genotypic characterization of non-typhoidal Salmonella isolated from a Brazilian pork production chain. Food Res Int 2020; 137:109406. [PMID: 33233093 DOI: 10.1016/j.foodres.2020.109406] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2020] [Revised: 06/02/2020] [Accepted: 06/03/2020] [Indexed: 01/12/2023]
Abstract
Pork products are important sources of foodborne non-typhoidal Salmonella in Brazil where antibiotics are commonly used throughout the pork production process and this has the potential to selectively favor antibiotic-resistant strains. We characterized the genotypic and phenotypic diversity of S. enterica isolates (n = 41) that were isolated in Brazil. Isolates were collected from ten swine farms and one slaughterhouse. Whole-genome sequencing and in silico serotyping demonstrated that the S. enterica serovar Typhimurium was the most common serotype (n = 17), but eight additional servoars were identified. Isolates presented high similarity based on comparison of DNA sequences (minimum of 89.6%), and sequence variation grouped according to serotype. Eight multilocus sequence types were identified with ST19 being most common (n = 21). Several plasmids replicons were detected, with Col (RNAI) the most abundant (n = 30), followed by IncR (n = 22), IncI1 (n = 10) and IncA/C2 (n = 10). Minimum inhibitory concentration assays showed that the principle resistance phenotypes were for streptomycin (90.2%), tetracycline (87.8%), ampicillin (80.5%), chloramphenicol (70.7%) and ciprofloxacin (51.2%). Only two isolates were resistant to third-generation cephalosporins and no isolates were resistant to two tested carbapenems. Twenty-six unique antimicrobial-resistance genes were identified with blaTEM-1A and blaTEM-1B likely responsible for most beta-lactam resistance and floR responsible for most chloramphenicol resistance. Six strains were positive for mcr-1. At the time of collection, the sampled farms were adding ciprofloxacin to feed and this may have contributed to the high prevalence of resistance to this antibiotic. The high number of multidrug resistant Salmonella and the presence of multiple resistant genes and plasmids emphasize the diversity of Salmonella in the studied pork chain, specially from serotype Typhimurium.
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Vico JP, Lorenzutti AM, Zogbi AP, Aleu G, Sánchez IC, Caffer MI, Rosmini MR, Mainar-Jaime RC. Prevalence, associated risk factors, and antimicrobial resistance profiles of non-typhoidal Salmonella in large scale swine production in Córdoba, Argentina. Res Vet Sci 2020; 130:161-169. [PMID: 32193003 DOI: 10.1016/j.rvsc.2020.03.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2018] [Revised: 02/04/2020] [Accepted: 03/02/2020] [Indexed: 11/15/2022]
Abstract
Non-typhoidal Salmonella is considered a major public health concern. The growing relevance of pigs as reservoir of Salmonella spp. has prompted several countries to set up surveillance and control programs to fight Salmonella infection in swine and reduce public health risk. In the last decade, pork production in Córdoba increased significantly to become one of the most important pig production provinces in Argentina. The aim of this study was to estimate Salmonella spp. prevalence and associated risk factors in large scale-farms in this province. Mesenteric lymph nodes (MLN) of 580 pigs from 20 finishing large-scale farms were collected between 2014 and 2015 to estimate Salmonella infection. A prevalence of 41.5% (95%CI: 37.6-45.6%) was observed. Two major risk factors were significantly associated with Salmonella infection, both related to the pre-slaughter period (distance from the farm to the slaughterhouse and lairage time), highlighting the need to pay special attention to pre-slaughter practices in the province. Shortening transport times and complying with national regulations for lairage time at slaughter may help to reduce the prevalence of infection. Sixteen different serovars were identified, being S. Anatum and S. Typhimurium the most prevalent ones. Moreover, two isolate of the monophasic variant of Salmonella Typhimurium (I 4,5,12:i:-) resistant to enrofloxacin and which also displayed multidrug resistance was isolated for first time from pigs in Córdoba. The moderate to high levels of antimicrobial resistance detected for antibiotics commonly used in the pig sector suggested the need for implementing a plan to limit their use in the province.
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Affiliation(s)
- J P Vico
- Instituto de Investigaciones en Recursos Humanos y Sustentabilidad, José Sánchez Labrador S.J IRNASUS-Conicet-Univesidad Católica de Córdoba, Facultad de Ciencias Agropecuarias, Veterinaria, Universidad Católica de Córdoba, Av. Armada Argentina 3555, X5016DHK Córdoba, Argentina.
| | - A M Lorenzutti
- Instituto de Investigaciones en Recursos Humanos y Sustentabilidad, José Sánchez Labrador S.J IRNASUS-Conicet-Univesidad Católica de Córdoba, Facultad de Ciencias Agropecuarias, Veterinaria, Universidad Católica de Córdoba, Av. Armada Argentina 3555, X5016DHK Córdoba, Argentina
| | - A P Zogbi
- Instituto de Investigaciones en Recursos Humanos y Sustentabilidad, José Sánchez Labrador S.J IRNASUS-Conicet-Univesidad Católica de Córdoba, Facultad de Ciencias Agropecuarias, Veterinaria, Universidad Católica de Córdoba, Av. Armada Argentina 3555, X5016DHK Córdoba, Argentina
| | - G Aleu
- Instituto de Investigaciones en Recursos Humanos y Sustentabilidad, José Sánchez Labrador S.J IRNASUS-Conicet-Univesidad Católica de Córdoba, Facultad de Ciencias Agropecuarias, Veterinaria, Universidad Católica de Córdoba, Av. Armada Argentina 3555, X5016DHK Córdoba, Argentina
| | - I C Sánchez
- Instituto de Investigaciones en Recursos Humanos y Sustentabilidad, José Sánchez Labrador S.J IRNASUS-Conicet-Univesidad Católica de Córdoba, Facultad de Ciencias Agropecuarias, Veterinaria, Universidad Católica de Córdoba, Av. Armada Argentina 3555, X5016DHK Córdoba, Argentina
| | - M I Caffer
- Servicio de Enterobacterias, Instituto Nacional de Enfermedades Infecciosas (INEI) - ANLIS "Dr. Carlos G. Malbrán", Avenida Velez Sarfield 563, C1282AFF Ciudad Autónoma de Buenos Aires, Argentina
| | - M R Rosmini
- Universidad Nacional del Litoral, Facultad de Ciencias Veterinarias, R.P. Kreder 2805, S3080HOF Esperanza, Santa Fe, Argentina
| | - R C Mainar-Jaime
- Departamento de Patología Animal, Facultad de Veterinaria, Instituto Agroalimentario de Aragón - IA2 - (Universidad de Zaragoza-CITA), Calle de Miguel Servet 177, 50013 Zaragoza, Spain
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Naberhaus SA, Krull AC, Arruda BL, Arruda P, Sahin O, Schwartz KJ, Burrough ER, Magstadt DR, Matias Ferreyra F, Gatto IRH, Meiroz de Souza Almeida H, Wang C, Kreuder AJ. Pathogenicity and Competitive Fitness of Salmonella enterica Serovar 4,[5],12:i:- Compared to Salmonella Typhimurium and Salmonella Derby in Swine. Front Vet Sci 2020; 6:502. [PMID: 32083096 PMCID: PMC7002397 DOI: 10.3389/fvets.2019.00502] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 12/19/2019] [Indexed: 12/14/2022] Open
Abstract
Since 2014, Salmonella 4,[5],12:i:- has emerged as the most common serovar of Salmonella enterica identified from swine samples submitted to veterinary diagnostic laboratories in the United States. To compare the pathogenicity of S. 4,[5],12:i:- in swine to the known pathogenic Salmonella Typhimurium and lesser pathogenic Salmonella Derby, 72 pigs (20 per Salmonella serovar treatment and 12 controls) were inoculated with either S. Typhimurium, S. 4,[5],12:i:-, S. Derby, or sham-inoculated and followed for up to 28 days thereafter via rectal temperature, fecal scoring, and fecal culture. Animals were euthanized on days 2, 4, or 28 to determine the gross and histopathologic signs of disease and tissue colonization. The results clearly demonstrate that for the isolates selected, serovar 4,[5],12:i:- possesses similar ability as serovar Typhimurium to cause clinical disease, colonize the tonsils and ileocecal lymph nodes, and be shed in the feces of infected swine past resolution of clinical disease. To compare the competitive fitness of S. 4,[5],12:i:- to S. Typhimurium in swine when co-infected, 12 pigs were co-inoculated with equal concentrations of both S. Typhimurium and S. 4,[5],12:i and followed for up to 10 days thereafter. When co-inoculated, serovar 4,[5],12:i:- was consistently detected in the feces of a higher percentage of pigs and at higher concentrations than serovar Typhimurium, suggesting an increased competitive fitness of 4,[5],12:i:- relative to serovar Typhimurium when inoculated simultaneously into naïve pigs. Whole genome sequencing analysis of the isolates used in these studies revealed similar virulence factor presence in all S. 4,[5],12:i:- and S. Typhimurium isolates, but not S. Derby, providing additional evidence for similar pathogenicity potential between serovars 4,[5],12:i:- and Typhimurium. Altogether, this data strongly supports the hypothesis that S. 4,[5],12:i:- is a pathogen of swine and suggests a mechanism through increased competitive fitness for the increasing identification of Salmonella 4,[5],12:i:- in swine diagnostic samples over the past several years.
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Affiliation(s)
- Samantha A Naberhaus
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Adam C Krull
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Bailey L Arruda
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Paulo Arruda
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Orhan Sahin
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Kent J Schwartz
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Eric R Burrough
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Drew R Magstadt
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Franco Matias Ferreyra
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Igor R H Gatto
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Henrique Meiroz de Souza Almeida
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
| | - Chong Wang
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States.,Department of Statistics, College of Liberal Arts and Sciences, Iowa State University, Ames, IA, United States
| | - Amanda J Kreuder
- Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States.,Department of Veterinary Microbiology and Preventive Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA, United States
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Viana C, Sereno MJ, Pegoraro K, Yamatogi RS, Call DR, dos Santos Bersot L, Nero LA. Distribution, diversity, virulence genotypes and antibiotic resistance for Salmonella isolated from a Brazilian pork production chain. Int J Food Microbiol 2019; 310:108310. [DOI: 10.1016/j.ijfoodmicro.2019.108310] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Revised: 07/09/2019] [Accepted: 08/22/2019] [Indexed: 01/04/2023]
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