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Lee YJ, Park JY, Shang K, Zhang JF, Choi YR, Kim SW, Cha SY, Kang M, Wei B, Jang HK. Genetic Characterization of Avian Paramyxovirus Isolated from Wild Waterfowl in Korea between 2015 and 2021. Animals (Basel) 2024; 14:780. [PMID: 38473165 DOI: 10.3390/ani14050780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Revised: 02/28/2024] [Accepted: 02/28/2024] [Indexed: 03/14/2024] Open
Abstract
Avian paramyxoviruses (APMVs) are often carried by wild waterfowl, and the wild waterfowl may play an important role in the maintenance and spread of these viruses. In this study, we investigated APMVs in the population of migratory wild waterfowl from 2015 to 2021 in Korea and analyzed their genetic characteristics. Fourteen viruses were isolated and subsequently identified as APMV-1 (n = 13) and APMV-13 (n = 1). Phylogenetic analysis of the full fusion gene of 13 APMV-1 isolates showed that 10 APMV-1 isolates belonged to the class II sub-genotype I.2, which was epidemiologically linked to viruses from the Eurasian continent, and 3 viruses belonged to class I, which linked to viruses from the USA. The APMV-13 isolates from wild geese in this study were highly homology to the virus isolated from China. Sequence analysis of 14 isolates showed that all isolates had a typical lentogenic motif at the cleavage site. In summary, we identified the wild species likely to be infected with APMV and our data suggest possible intercontinental transmission of APMV by wild waterfowl. Our current study also provides the first evidence for the presence of class I of APMV-1 and APMV-13 in wild waterfowl surveyed in Korea.
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Affiliation(s)
- Yea-Jin Lee
- Department of Avian Diseases, College of Veterinary Medicine and Center for Avian Disease, Jeonbuk National University, Iksan 54596, Republic of Korea
| | - Jong-Yeol Park
- Department of Avian Diseases, College of Veterinary Medicine and Center for Avian Disease, Jeonbuk National University, Iksan 54596, Republic of Korea
| | - Ke Shang
- Department of Avian Diseases, College of Veterinary Medicine and Center for Avian Disease, Jeonbuk National University, Iksan 54596, Republic of Korea
| | - Jun-Feng Zhang
- Department of Avian Diseases, College of Veterinary Medicine and Center for Avian Disease, Jeonbuk National University, Iksan 54596, Republic of Korea
| | - Yu-Ri Choi
- Department of Avian Diseases, College of Veterinary Medicine and Center for Avian Disease, Jeonbuk National University, Iksan 54596, Republic of Korea
| | - Sang-Won Kim
- Department of Avian Diseases, College of Veterinary Medicine and Center for Avian Disease, Jeonbuk National University, Iksan 54596, Republic of Korea
| | - Se-Yeoun Cha
- Department of Avian Diseases, College of Veterinary Medicine and Center for Avian Disease, Jeonbuk National University, Iksan 54596, Republic of Korea
| | - Min Kang
- Department of Avian Diseases, College of Veterinary Medicine and Center for Avian Disease, Jeonbuk National University, Iksan 54596, Republic of Korea
- Bio Disease Control (BIOD) Co., Ltd., Iksan 54596, Republic of Korea
| | - Bai Wei
- Department of Avian Diseases, College of Veterinary Medicine and Center for Avian Disease, Jeonbuk National University, Iksan 54596, Republic of Korea
| | - Hyung-Kwan Jang
- Department of Avian Diseases, College of Veterinary Medicine and Center for Avian Disease, Jeonbuk National University, Iksan 54596, Republic of Korea
- Bio Disease Control (BIOD) Co., Ltd., Iksan 54596, Republic of Korea
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Kim JY, Jeong S, Kim DW, Lee DW, Lee DH, Kim D, Kwon JH. Genomic epidemiology of highly pathogenic avian influenza A (H5N1) virus in wild birds in South Korea during 2021-2022: Changes in viral epidemic patterns. Virus Evol 2024; 10:veae014. [PMID: 38455682 PMCID: PMC10919474 DOI: 10.1093/ve/veae014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 01/28/2024] [Accepted: 02/06/2024] [Indexed: 03/09/2024] Open
Abstract
Clade 2.3.4.4b highly pathogenic avian influenza A (HPAI) viruses have been detected in wild birds worldwide, causing recurrent outbreaks since 2016. During the winter of 2021-2022, we detected one H5N8 and forty-three H5N1 clade 2.3.4.4b HPAI viruses from wild birds in South Korea. Phylogenetic analysis revealed that HA gene of H5N1 viruses was divided into two genetically distinct groups (N1.G1 and N1.G2). Bayesian phylodynamic analysis demonstrated that wild birds play a vital role in viral transmission and long-term maintenance. We identified five genotypes (N1.G1.1, N1.G2, N1.G2.1, N1.G2.2, and N1.G2.2.1) having distinct gene segment constellations most probably produced by reassortments with low-pathogenic avian influenza viruses. Our results suggest that clade 2.3.4.4b persists in wild birds for a long time, causing continuous outbreaks, compared with previous clades of H5 HPAI viruses. Our study emphasizes the need for enhancing control measures in response to the changing viral epidemiology.
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Affiliation(s)
- Ji-Yun Kim
- College of Veterinary Medicine, Kyungpook National University, 80 Daehak-ro, Daegu 41566, Republic of Korea
| | - Sol Jeong
- Wildlife Disease Research Team, National Institute of Wildlife Disease Control and Prevention (NIWDC), Ministry of Environment, 1, Songam-gil, Gwangju 62407, Republic of Korea
| | - Da-Won Kim
- College of Veterinary Medicine, Kyungpook National University, 80 Daehak-ro, Daegu 41566, Republic of Korea
| | - Dong-Wook Lee
- College of Veterinary Medicine, Kyungpook National University, 80 Daehak-ro, Daegu 41566, Republic of Korea
| | - Dong-Hun Lee
- College of Veterinary Medicine, Konkuk University, 120, Neungdong-ro, Seoul 05029, Republic of Korea
| | - Daehun Kim
- Wildlife Disease Research Team, National Institute of Wildlife Disease Control and Prevention (NIWDC), Ministry of Environment, 1, Songam-gil, Gwangju 62407, Republic of Korea
| | - Jung-Hoon Kwon
- College of Veterinary Medicine, Kyungpook National University, 80 Daehak-ro, Daegu 41566, Republic of Korea
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Sagong M, Kang YM, Kim NY, Noh EB, Heo GB, An SH, Lee YJ, Choi YK, Lee KN. Development of a Novel Korean H9-Specific rRT-PCR Assay and Its Application for Avian Influenza Virus Surveillance in Korea. J Microbiol 2023; 61:929-936. [PMID: 38010587 DOI: 10.1007/s12275-023-00088-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 10/16/2023] [Accepted: 10/19/2023] [Indexed: 11/29/2023]
Abstract
Since the 2000s, the Y439 lineage of H9N2 avian influenza virus (AIV) has been the predominant strain circulating in poultry in Korea; however, in 2020, the Y280 lineage emerged and spread rapidly nationwide, causing large economic losses. To prevent further spread and circulation of such viruses, rapid detection and diagnosis through active surveillance programs are crucial. Here, we developed a novel H9 rRT-PCR assay that can detect a broad range of H9Nx viruses in situations in which multiple lineages of H9 AIVs are co-circulating. We then evaluated its efficacy using a large number of clinical samples. The assay, named the Uni Kor-H9 assay, showed high sensitivity for Y280 lineage viruses, as well as for the Y439 lineage originating in Korean poultry and wild birds. In addition, the assay showed no cross-reactivity with other subtypes of AIV or other avian pathogens. Furthermore, the Uni Kor-H9 assay was more sensitive, and had higher detection rates, than reference H9 rRT-PCR methods when tested against a panel of domestically isolated H9 AIVs. In conclusion, the novel Uni Kor-H9 assay enables more rapid and efficient diagnosis than the "traditional" method of virus isolation followed by subtyping RT-PCR. Application of the new H9 rRT-PCR assay to AI active surveillance programs will help to control and manage Korean H9 AIVs more efficiently.
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Affiliation(s)
- Mingeun Sagong
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon, 39660, Republic of Korea
- Department of Microbiology, College of Medicine and Medical Research Institute, Chungbuk National University, Cheongju, 28644, Republic of Korea
| | - Yong-Myung Kang
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon, 39660, Republic of Korea
| | - Na Yeong Kim
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon, 39660, Republic of Korea
| | - Eun Bi Noh
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon, 39660, Republic of Korea
| | - Gyeong-Beom Heo
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon, 39660, Republic of Korea
| | - Se-Hee An
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon, 39660, Republic of Korea
| | - Youn-Jeong Lee
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon, 39660, Republic of Korea
| | - Young Ki Choi
- Department of Microbiology, College of Medicine and Medical Research Institute, Chungbuk National University, Cheongju, 28644, Republic of Korea.
| | - Kwang-Nyeong Lee
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon, 39660, Republic of Korea.
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Prevalence, Seroprevalence and Risk Factors of Avian Influenza in Wild Bird Populations in Korea: A Systematic Review and Meta-Analysis. Viruses 2023; 15:v15020472. [PMID: 36851686 PMCID: PMC9958818 DOI: 10.3390/v15020472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 02/03/2023] [Accepted: 02/07/2023] [Indexed: 02/11/2023] Open
Abstract
Since the first recorded outbreak of the highly pathogenic avian influenza (HPAI) virus (H5N1) in South Korea in 2003, numerous sporadic outbreaks have occurred in South Korean duck and chicken farms, all of which have been attributed to avian influenza transmission from migratory wild birds. A thorough investigation of the prevalence and seroprevalence of avian influenza viruses (AIVs) in wild birds is critical for assessing the exposure risk and for directing strong and effective regulatory measures to counteract the spread of AIVs among wild birds, poultry, and humans. In this study, we performed a systematic review and meta-analysis, following the PRISMA guidelines, to generate a quantitative estimate of the prevalence and seroprevalence of AIVs in wild birds in South Korea. An extensive search of eligible studies was performed through electronic databases and 853 records were identified, of which, 49 fulfilled the inclusion criteria. The pooled prevalence and seroprevalence were estimated to be 1.57% (95% CI: 0.98, 2.51) and 15.91% (95% CI: 5.89, 36.38), respectively. The highest prevalence and seroprevalence rates were detected in the Anseriformes species, highlighting the critical role of this bird species in the dissemination of AIVs in South Korea. Furthermore, the results of the subgroup analysis also revealed that the AIV seroprevalence in wild birds varies depending on the detection rate, sample size, and sampling season. The findings of this study demonstrate the necessity of strengthening the surveillance for AIV in wild birds and implementing strong measures to curb the spread of AIV from wild birds to the poultry population.
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Kim J, Park CM, Choi SH, Yang MJ, Lee JY, Jeon BS, Ku HO, Kim MS. Assessment of acute inhalation toxicity of citric acid and sodium hypochlorite in rats. J Vet Sci 2023; 24:e22. [PMID: 37012031 PMCID: PMC10071277 DOI: 10.4142/jvs.22253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 12/05/2022] [Accepted: 12/28/2022] [Indexed: 02/22/2023] Open
Abstract
BACKGROUND Citric acid (CA) and sodium hypochlorite (NaOCl) have been used to disinfect animals to protect them against avian influenza and foot-and-mouth disease. OBJECTIVES We performed a good laboratory practice (GLP)-compliant animal toxicity study to assess the acute toxic effects of CA and NaOCl aerosol exposure in Sprague-Dawley rats. METHODS Groups of five rats per sex were exposed for 4 h to four concentrations of the two chemicals, i.e., 0.00, 0.22, 0.67, and 2.00 mg/L, using a nose-only exposure. After a single exposure to the chemicals, clinical signs, body weight, and mortality was observed during the observation period. On day 15, an autopsy, and then gross findings, and histopathological analysis were performed. RESULTS After exposure to CA and NaOCl, body weight loss was observed but recovered. Two males died in the CA 2.00 mg/L group and, two males and one female died in the 2.00 mg/L NaOCl group. In the gross findings and histopathological analysis, discoloration of the lungs was observed in the CA exposed group and inflammatory lesions with discoloration of the lungs were observed in the NaOCl exposed group. These results suggest that the lethal concentration 50 (LC50) of CA is 1.73390 mg/L for males and > 1.70 mg/L for females. For NaOCl, the LC50 was 2.22222 mg/L for males and 2.39456 mg/L for females. CONCLUSIONS The Globally Harmonized System is category 4 for both CA and NaOCl. In this study, the LC50 results were obtained through a GLP-based acute inhalation toxicity assessment. These results provide useful data to reset safety standards for CA and NaOCl use.
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Affiliation(s)
- Jinhee Kim
- Inhaolation toxicology research group, Korea Institute of Toxicology, Jeongeup 56212, Korea
| | - Chul-Min Park
- Inhaolation toxicology research group, Korea Institute of Toxicology, Jeongeup 56212, Korea
| | - Su Hyun Choi
- Inhaolation toxicology research group, Korea Institute of Toxicology, Jeongeup 56212, Korea
| | - Mi Jin Yang
- Inhaolation toxicology research group, Korea Institute of Toxicology, Jeongeup 56212, Korea
| | - Ju-Yeon Lee
- Inhaolation toxicology research group, Korea Institute of Toxicology, Jeongeup 56212, Korea
| | - Byung-Suk Jeon
- Veterinary drugs and biologics division, Animal and Plant Quarantine Agency, Gimcheon 39660, Korea
| | - Hyun-Ok Ku
- Veterinary drugs and biologics division, Animal and Plant Quarantine Agency, Gimcheon 39660, Korea
| | - Min-Seok Kim
- Inhaolation toxicology research group, Korea Institute of Toxicology, Jeongeup 56212, Korea
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Sagong M, Lee KN, Lee EK, Kang H, Choi YK, Lee YJ. Current situation and control strategies of H9N2 avian influenza in South Korea. J Vet Sci 2023; 24:e5. [PMID: 36560837 PMCID: PMC9899936 DOI: 10.4142/jvs.22216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 10/13/2022] [Accepted: 10/20/2022] [Indexed: 12/13/2022] Open
Abstract
The H9N2 avian influenza (AI) has become endemic in poultry in many countries since the 1990s, which has caused considerable economic losses in the poultry industry. Considering the long history of the low pathogenicity H9N2 AI in many countries, once H9N2 AI is introduced, it is more difficult to eradicate than high pathogenicity AI. Various preventive measures and strategies, including vaccination and active national surveillance, have been used to control the Y439 lineage of H9N2 AI in South Korea, but it took a long time for the H9N2 virus to disappear from the fields. By contrast, the novel Y280 lineage of H9N2 AI was introduced in June 2020 and has spread nationwide. This study reviews the history, genetic and pathogenic characteristics, and control strategies for Korean H9N2 AI. This review may provide some clues for establishing control strategies for endemic AIV and a newly introduced Y280 lineage of H9N2 AI in South Korea.
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Affiliation(s)
- Mingeun Sagong
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Korea.,Department of Microbiology, College of Medicine and Medical Research Institute, Chungbuk National University, Cheongju 28644, Korea
| | - Kwang-Nyeong Lee
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Korea
| | - Eun-Kyoung Lee
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Korea
| | - Hyunmi Kang
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Korea
| | - Young Ki Choi
- Department of Microbiology, College of Medicine and Medical Research Institute, Chungbuk National University, Cheongju 28644, Korea.
| | - Youn-Jeong Lee
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Korea.
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Baek YG, Lee YN, Park YR, Chung DH, Kwon JH, Si YJ, Heo GB, Lee YJ, Lee DH, Lee EK. Evolution, Transmission, and Pathogenicity of High Pathogenicity Avian Influenza Virus A (H5N8) Clade 2.3.4.4, South Korea, 2014–2016. Front Vet Sci 2022; 9:906944. [PMID: 35799844 PMCID: PMC9253604 DOI: 10.3389/fvets.2022.906944] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Accepted: 05/26/2022] [Indexed: 11/29/2022] Open
Abstract
During 2014–2016, clade 2.3.4.4 H5N8 high pathogenicity avian influenza virus (HPAIV) caused the largest known avian influenza epidemic in South Korea. Based on data from earlier H5N8 outbreaks, primitive H5N8 virus in South Korea was classified into five subgroups: C1, C2, C3, C4, and C5. The present study investigated the pathogenic and molecular epidemiologic characteristics of H5N8 viruses obtained from 388 cases of poultry farms and 85 cases of wild bird infections in South Korea during 2014–2016. Representative viruses of subgroups C1, C2, and C4 showed significant pathobiological differences in specific pathogen-free (SPF) chickens, with the H1731 (C1) virus showing substantially lower infectivity, transmissibility, and pathogenicity than the H2102 (C2) and H1924 (C4) viruses. Full genome sequence analysis showed the number of mutations that significantly increased in domestic duck-origin H5N8 HPAIVs compared to the viruses from gallinaceous poultry. These differences may have been due to the long-term circulation of viruses in domestic duck farms. The same mutations, at positions 219 and 757 of PB1, independently evolving in the C0, C1, and C2 subgroups may have been positively selected, resulting in convergent evolution at the amino acid level. Bayesian discrete trait phylodynamic analysis (DTA) indicated multiple introductions of H5N8 HPAIV from wild birds into domestic poultry in various regions in South Korea. Following initial viral introduction into domestic duck farms in the western part of Korea, domestic ducks played a major role in viral transmission and maintenance. These findings highlight the need for continued genomic surveillance and pathobiological characterization of HPAIV in birds. Enhanced biosecurity in poultry farms should be implemented to prevent the introduction, maintenance, and spread of HPAIV.
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Affiliation(s)
- Yoon-Gi Baek
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon-si, South Korea
| | - Yu-Na Lee
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon-si, South Korea
| | - Yu-Ri Park
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon-si, South Korea
| | - David H. Chung
- Department of Pathobiology and Veterinary Science, University of Connecticut, Storrs, CT, United States
| | - Jung-Hoon Kwon
- College of Veterinary Medicine, Kyungpook National University, Daegu, South Korea
| | - Young-Jae Si
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon-si, South Korea
| | - Gyeong-Beom Heo
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon-si, South Korea
| | - Youn-Jeong Lee
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon-si, South Korea
| | - Dong-Hun Lee
- College of Veterinary Medicine, Konkuk University, Seoul, South Korea
- *Correspondence: Dong-Hun Lee
| | - Eun-Kyoung Lee
- Avian Influenza Research & Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon-si, South Korea
- Eun-Kyoung Lee
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Ahmad S, Koh KY, Yoo DS, Lee JI. Impact of inland waters on highly pathogenic avian influenza outbreaks in neighboring poultry farms in South Korea. J Vet Sci 2022; 23:e36. [PMID: 35618317 PMCID: PMC9149499 DOI: 10.4142/jvs.21278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Revised: 01/11/2022] [Accepted: 01/20/2022] [Indexed: 11/20/2022] Open
Abstract
Background Since 2003, the H5 highly pathogenic avian influenza (HPAI) subtype has caused massive economic losses in the poultry industry in South Korea. The role of inland water bodies in avian influenza (AI) outbreaks has not been investigated. Identifying water bodies that facilitate risk pathways leading to the incursion of the HPAI virus (HPAIV) into poultry farms is essential for implementing specific precautionary measures to prevent viral transmission. Objectives This matched case-control study (1:4) examined whether inland waters were associated with a higher risk of AI outbreaks in the neighboring poultry farms. Methods Rivers, irrigation canals, lakes, and ponds were considered inland water bodies. The cases and controls were chosen based on the matching criteria. The nearest possible farms located within a radius of 3 km of the case farms were chosen as the control farms. The poultry farms were selected randomly, and two HPAI epidemics (H5N8 [2014–2016] and H5N6 [2016–2017]) were studied. Conditional logistic regression analysis was applied. Results Statistical analysis revealed that inland waters near poultry farms were significant risk factors for AI outbreaks. The study speculated that freely wandering wild waterfowl and small animals contaminate areas surrounding poultry farms. Conclusions Pet birds and animals raised alongside poultry birds on farm premises may wander easily to nearby waters, potentially increasing the risk of AI infection in poultry farms. Mechanical transmission of the AI virus occurs when poultry farm workers or visitors come into contact with infected water bodies or their surroundings. To prevent AI outbreaks in the future, poultry farms should adopt strict precautions to avoid contact with nearby water bodies and their surroundings.
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Affiliation(s)
- Saleem Ahmad
- Veterinary Public Health Lab, College of Veterinary Medicine, Chonnam National University, Gwangju 61216, Korea
| | - Kye-Young Koh
- Veterinary Public Health Lab, College of Veterinary Medicine, Chonnam National University, Gwangju 61216, Korea
| | - Dae-Sung Yoo
- Animal and Plant Quarantine Agency, Gimcheon 39660, Korea
| | - Jae-Il Lee
- Veterinary Public Health Lab, College of Veterinary Medicine, Chonnam National University, Gwangju 61216, Korea
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Lai VD, Kim JW, Choi YY, Kim JJ, So HH, Mo J. First report of field cases of Y280-like LPAI H9N2 strains in South Korean poultry farms: pathological findings and genetic characterization. Avian Pathol 2021; 50:327-338. [PMID: 34013789 DOI: 10.1080/03079457.2021.1929833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
H9N2 low-pathogenic avian influenza (LPAI) viruses have long been circulating in the world poultry industry, resulting in substantial economic losses. In addition to bird health consequences, viruses from specific lineages such as G1 and Y280 are also known to have the potential to cause a pandemic within the human population. In South Korea, after introducing inactivated H9N2 vaccines in 2007, there were no field outbreaks of H9N2 LPAI since 2009. However, in June 2020, an H9N2 virus was isolated from an outbreak in a Korean chicken farm. This strain was distinct from the predominant Korean/Y439 lineage and was believed to be part of the Y280-like lineage. Since the first case of this new H9N2 LPAI, nine more cases of field infections in poultry farms were documented through July and December of 2020. Phylogenetic analysis of the haemagglutinin (HA) and neuraminidase genes of these case isolates revealed that all strains were grouped with exotic Y280-like strains that did not previously exist in South Korea and were emerging into a new cluster. Serological assays also confirmed the existence of antibodies to Y280-like viruses in field sera collected from infected birds, and that they had seroconverted. Further analysis of the receptor-binding region in the HA protein also revealed that these isolates harboured a human-like motif that could potentially affect mammals and humans, demonstrating a possible public health risk. This is the first report of field cases caused by Y280-like H9N2 LPAI in the Korean poultry industry. RESEARCH HIGHLIGHTSField outbreaks caused by Y280-like H9N2 avian influenza viruses were confirmed.A human-like motif was found at the HA receptor-binding region of all isolates.
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Affiliation(s)
| | | | | | | | - Hyun-Hee So
- Hansol Poultry Hospital, Yongin, South Korea
| | - Jongseo Mo
- Southeast Poultry Research Laboratory, USDA-ARS, US National Poultry Research Center, Athens, GA, USA
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Noh JY, Kim KJ, Lee SH, Kim JB, Kim DH, Youk S, Song CS, Nahm SS. Thermal Image Scanning for the Early Detection of Fever Induced by Highly Pathogenic Avian Influenza Virus Infection in Chickens and Ducks and Its Application in Farms. Front Vet Sci 2021; 8:616755. [PMID: 34113668 PMCID: PMC8185153 DOI: 10.3389/fvets.2021.616755] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Accepted: 04/30/2021] [Indexed: 11/17/2022] Open
Abstract
Highly pathogenic avian influenza (HPAI) is considered as one of the most devastating poultry diseases. It is imperative to immediately report any known outbreaks to the World Organization for Animal Health. Early detection of infected birds is of paramount importance to control virus spread, thus minimizing the associated economic loss. In this study, thermal imaging camera devices were used to detect change in the maximum surface temperature (MST) of chickens (n = 5) and ducks (n = 2) as an early indicator of experimental HPAI infection. The MST of both chickens and ducks increased at least 24 h before the manifestation of clinical signs of HPAI infection, depending on the severity of the infection. The basal MST was recorded for broiler chickens housed under small pen and normal farm conditions without intentional infection. A threshold cutoff of MST was established based on the circadian rhythm of normal MST. This study suggests that thermal imaging of chickens and ducks is a promising tool to screen any potential HPAI-infected flock in order to expedite HPAI diagnosis.
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Affiliation(s)
- Jin-Yong Noh
- Konkuk Ctc bio Animal Vaccine KCAV Co. Ltd, Seoul, South Korea
| | - Kyu-Jik Kim
- Konkuk Ctc bio Animal Vaccine KCAV Co. Ltd, Seoul, South Korea
| | - Sun-Hak Lee
- Department of Avian Disease, College of Veterinary Medicine, Konkuk University, Seoul, South Korea
| | - Jun-Beom Kim
- Konkuk Ctc bio Animal Vaccine KCAV Co. Ltd, Seoul, South Korea
| | - Deok-Hwan Kim
- Department of Avian Disease, College of Veterinary Medicine, Konkuk University, Seoul, South Korea
| | - Sungsu Youk
- Department of Avian Disease, College of Veterinary Medicine, Konkuk University, Seoul, South Korea
| | - Chang-Seon Song
- Konkuk Ctc bio Animal Vaccine KCAV Co. Ltd, Seoul, South Korea.,Department of Avian Disease, College of Veterinary Medicine, Konkuk University, Seoul, South Korea
| | - Sang-Soep Nahm
- Department of Anatomy, College of Veterinary Medicine, Konkuk University, Seoul, South Korea
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11
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Kim GS, Kim TS, Son JS, Lai VD, Park JE, Wang SJ, Jheong WH, Mo IP. The difference of detection rate of avian influenza virus in the wild bird surveillance using various methods. J Vet Sci 2020; 20:e56. [PMID: 31565899 PMCID: PMC6769331 DOI: 10.4142/jvs.2019.20.e56] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2019] [Revised: 07/17/2019] [Accepted: 08/28/2019] [Indexed: 11/20/2022] Open
Abstract
Korea is located within the East Asian-Australian flyway of wild migratory birds during the fall and winter seasons. Consequently, the likelihood of introduction of numerous subtypes and pathotypes of the Avian influenza (AI) virus to Korea has been thought to be very high. In the current study, we surveyed wild bird feces for the presence of AI virus that had been introduced to Korea between September 2017 and February 2018. To identify and characterize the AI virus, we employed commonly used methods, namely, virus isolation (VI) via egg inoculation, real-time reverse transcription-polymerase chain reaction (rRT-PCR), conventional RT-PCR (cRT-PCR) and a newly developed next generation sequencing (NGS) approach. In this study, 124 out of 11,145 fresh samples of wild migratory birds tested were rRT-PCR positive; only 52.0% of VI positive samples were determined as positive by rRT-PCR from fecal supernatant. Fifty AI virus specimens were isolated from fresh fecal samples and typed. The cRT-PCR subtyping results mostly coincided with the NGS results, although NGS detected the presence of 11 HA genes and four NA genes that were not detected by cRT-PCR. NGS analysis confirmed that 12% of the identified viruses were mixed-subtypes which were not detected by cRT-PCR. Prevention of the occurrence of AI virus requires a workflow for rapid and accurate virus detection and verification. However, conventional methods of detection have some limitations. Therefore, different methods should be combined for optimal surveillance, and further studies are needed in aspect of the introduction and application of new methods such as NGS.
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Affiliation(s)
- Gang San Kim
- Avian Disease Laboratory, College of Veterinary Medicine, Chungbuk National University, Cheongju 28644, Korea
| | - Tae Sik Kim
- Avian Disease Laboratory, College of Veterinary Medicine, Chungbuk National University, Cheongju 28644, Korea
| | - Joo Sung Son
- Avian Disease Laboratory, College of Veterinary Medicine, Chungbuk National University, Cheongju 28644, Korea
| | - Van Dam Lai
- Avian Disease Laboratory, College of Veterinary Medicine, Chungbuk National University, Cheongju 28644, Korea
| | - Jung Eun Park
- Environmental Health Research Division, National Institute of Environmental Research, Incheon 22689, Korea
| | - Seung Jun Wang
- Environmental Health Research Division, National Institute of Environmental Research, Incheon 22689, Korea
| | - Weon Hwa Jheong
- Environmental Health Research Division, National Institute of Environmental Research, Incheon 22689, Korea
| | - In Pil Mo
- Avian Disease Laboratory, College of Veterinary Medicine, Chungbuk National University, Cheongju 28644, Korea.
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12
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Identification the Presence of Clade 2.3.2.1c-Avian Influenza H5N1, a Highly Pathogenic Virus in Iraq, 2018. MACEDONIAN VETERINARY REVIEW 2019. [DOI: 10.2478/macvetrev-2019-0024] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Abstract
For the first time in Iraq, we identified in March, 2018 the presence of a highly virulent avian influenza virus (AIV), H5N1 (Clade 2.3.2.1c), causing highly pathogenic avian influenza (HPAI) in poultry farms, Iraq,. The identification of the virus was done using a rapid serological test, a real time-qPCR, and glycoprotein gene sequencing. Using sequencing and phylogenetic analyses, the clade 2.3.2.1c virus was recorded to be clustered, with high similarity to Asian and West African AIV, HPAI H5N1 from Ivory Coast identified in 2015. According to our knowledge, there was no previous detection of the clade 2.3.2.1c made in Iraq. Our results provide evidence that high risk of HPAI H5 outbreaks might be present in Iraq, and this needs to lead to high quality surveillance targeting of wild and domestic birds for early diagnosis of HPAI. The current work provides feasible and accurate approaches for understanding the evolution of HPAI H5 virus in different countries around the world.
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13
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Lee MH, Song KY, Hwang HJ, Kim JH, Hwang I. Development of fast and sensitive protocols for the detection of viral pathogens using a small portable convection PCR platform. Mol Biol Rep 2019; 46:5073-5077. [PMID: 31313130 DOI: 10.1007/s11033-019-04961-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Accepted: 06/28/2019] [Indexed: 11/26/2022]
Abstract
One of the most crucial steps for preventing viral pandemics is the early detection of the causative virus on site. Various molecular and immunological approaches have been developed for virus detection. In this study, we investigated the utility of the recently introduced convection polymerase chain reaction (cPCR) platform for the rapid and sensitive detection of various animal viruses in the field, including the foot-and-mouth disease virus (FMDV) and avian influenza viruses (AIVs). Primer sets were designed to simultaneously detect two highly conserved regions of the FMDV, including the 5' untranslated region (5'-UTR) and 3D gene, and to specifically amplify the NP and hemagglutinin (HA) genes of H5 and H9 subtypes of AIVs. The portable cPCR system was able to amplify from as low as 1 to 10 copies of viral cDNAs in the singleplex mode and 10 to 100 copies of viral cDNAs in the duplex mode within 21 min. Thus, our data suggest that the cPCR protocols developed in this study are highly sensitive and enable quick detection of animal viruses in biological samples.
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Affiliation(s)
- Myoung Hui Lee
- Division of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, Pohang, 790-784, Republic of Korea
| | - Kyung-Young Song
- R&D Center, Ahram Biosystems Inc, Seoul, 133-120, Republic of Korea
| | - Hyun Jin Hwang
- R&D Center, Ahram Biosystems Inc, Seoul, 133-120, Republic of Korea
| | - Jeong Hee Kim
- Department of Biochemistry and Molecular Biology, College of Dentistry, Graduate School, Kyung Hee University, Seoul, 130-701, Republic of Korea.
- Department of Life and Nanopharmaceutical Sciences, College of Dentistry, Graduate School, Kyung Hee University, Seoul, 130-701, Republic of Korea.
| | - Inhwan Hwang
- Division of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, Pohang, 790-784, Republic of Korea.
- Department of Life Sciences, Pohang University of Science and Technology, Pohang, 790-784, Republic of Korea.
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14
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Bennett CE, Thomas R, Williams M, Zalasiewicz J, Edgeworth M, Miller H, Coles B, Foster A, Burton EJ, Marume U. The broiler chicken as a signal of a human reconfigured biosphere. ROYAL SOCIETY OPEN SCIENCE 2018; 5:180325. [PMID: 30662712 PMCID: PMC6304135 DOI: 10.1098/rsos.180325] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Accepted: 11/08/2018] [Indexed: 05/29/2023]
Abstract
Changing patterns of human resource use and food consumption have profoundly impacted the Earth's biosphere. Until now, no individual taxa have been suggested as distinct and characteristic new morphospecies representing this change. Here we show that the domestic broiler chicken is one such potential marker. Human-directed changes in breeding, diet and farming practices demonstrate at least a doubling in body size from the late medieval period to the present in domesticated chickens, and an up to fivefold increase in body mass since the mid-twentieth century. Moreover, the skeletal morphology, pathology, bone geochemistry and genetics of modern broilers are demonstrably different to those of their ancestors. Physical and numerical changes to chickens in the second half of the twentieth century, i.e. during the putative Anthropocene Epoch, have been the most dramatic, with large increases in individual bird growth rate and population sizes. Broiler chickens, now unable to survive without human intervention, have a combined mass exceeding that of all other birds on Earth; this novel morphotype symbolizes the unprecedented human reconfiguration of the Earth's biosphere.
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Affiliation(s)
- Carys E. Bennett
- School of Geography, Geology and the Environment, University of Leicester, Leicester LE1 7RH, UK
| | - Richard Thomas
- School of Archaeology and Ancient History, University of Leicester, Leicester LE1 7RH, UK
| | - Mark Williams
- School of Geography, Geology and the Environment, University of Leicester, Leicester LE1 7RH, UK
| | - Jan Zalasiewicz
- School of Geography, Geology and the Environment, University of Leicester, Leicester LE1 7RH, UK
| | - Matt Edgeworth
- School of Archaeology and Ancient History, University of Leicester, Leicester LE1 7RH, UK
| | - Holly Miller
- Department of Classics and Archaeology, University Park, University of Nottingham, Nottingham NG7 2RD, UK
| | - Ben Coles
- School of Geography, Geology and the Environment, University of Leicester, Leicester LE1 7RH, UK
| | - Alison Foster
- School of Archaeology and Ancient History, University of Leicester, Leicester LE1 7RH, UK
| | - Emily J. Burton
- School of Animal, Rural and Environmental Sciences, Nottingham Trent University, Nottingham NG25 0QF, UK
| | - Upenyu Marume
- School of Agriculture Science, North West University, P Bag X 2046, Mmabatho 2735, South Africa
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15
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Jang JW, Lee CY, Kim IH, Choi JG, Lee YJ, Yuk SS, Lee JH, Song CS, Kim JH, Kwon HJ. Optimized clade 2.3.2.1c H5N1 recombinant-vaccine strains against highly pathogenic avian influenza. J Vet Sci 2018; 18:299-306. [PMID: 28859269 PMCID: PMC5583417 DOI: 10.4142/jvs.2017.18.s1.299] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2017] [Revised: 07/06/2017] [Accepted: 07/14/2017] [Indexed: 01/17/2023] Open
Abstract
A/Puerto Rico/8/34 (PR8)-derived recombinant viruses have been used for seasonal flu vaccines; however, they are insufficient for vaccines against some human-fatal H5N1 highly pathogenic avian influenza (HPAI) viruses (HPAIV) due to low productivity. Additionally, the polymerase basic 2 (PB2) protein, an important mammalian-pathogenicity determinant, of PR8 possesses several mammalian-pathogenic mutations. We previously reported two avian PB2 genes (01310 and 0028) related to efficient replication in embryonated chicken eggs (ECEs) and nonpathogenicity in BALB/c mice. In this study, we generated PR8-derived H5N1 recombinant viruses harboring hemagglutinin (attenuated) and neuraminidase genes of a clade 2.3.2.1c H5N1 HPAIV (K10-483), as well as the 01310 or 0028 PB2 genes, and investigated their replication and immunogenicity. Compared with a control virus harboring six internal PR8 genes (rK10-483), the recombinant viruses possessing the 01310 and 0028 PB2 genes showed significantly higher replication efficiency in ECEs and higher antibody titers in chickens. In contrast to rK10-483, none of the viruses replicated in BALB/c mice, and all showed low titers in Madin-Darby canine kidney cells. Additionally, the recombinant viruses did not induce a neutralization antibody but elicited decreased protective immune responses against K10-483 in mice. Thus, the highly replicative and mammalian nonpathogenic recombinant H5N1 strains might be promising vaccine candidates against HPAI in poultry.
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Affiliation(s)
- Jin-Wook Jang
- Laboratory of Avian Diseases, Seoul National University, Seoul 88026, Korea.,College of Veterinary Medicine and BK21 PLUS for Veterinary Science, Seoul National University, Seoul 88026, Korea
| | - Chung-Young Lee
- Laboratory of Avian Diseases, Seoul National University, Seoul 88026, Korea.,College of Veterinary Medicine and BK21 PLUS for Veterinary Science, Seoul National University, Seoul 88026, Korea
| | - Il-Hwan Kim
- Center for Infectious Diseases, Korean National Institute of Health, Osong 28159, Korea
| | - Jun-Gu Choi
- Laboratory of Foreign Animal Disease, Animal and Plant Quarantine Agency, Gimcheon 39660, Korea
| | - Youn-Jeong Lee
- Laboratory of Avian Diseases, Animal and Plant Quarantine Agency, Gimcheon 39660, Korea
| | - Seong-Su Yuk
- Laboratory of Avian Diseases, College of Veterinary Medicine, Konkuk University, Seoul 05029, Korea
| | - Ji-Ho Lee
- Laboratory of Avian Diseases, College of Veterinary Medicine, Konkuk University, Seoul 05029, Korea
| | - Chang-Seon Song
- Laboratory of Avian Diseases, College of Veterinary Medicine, Konkuk University, Seoul 05029, Korea
| | - Jae-Hong Kim
- Laboratory of Avian Diseases, Seoul National University, Seoul 88026, Korea.,College of Veterinary Medicine and BK21 PLUS for Veterinary Science, Seoul National University, Seoul 88026, Korea
| | - Hyuk-Joon Kwon
- Laboratory of Poultry Production Medicine, Seoul National University, Seoul 88026, Korea.,College of Veterinary Medicine and BK21 PLUS for Veterinary Science, Seoul National University, Seoul 88026, Korea
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16
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Oh KH, Mo JS, Bae YJ, Lee SB, Lai VD, Wang SJ, Mo IP. Amino acid substitutions in low pathogenic avian influenza virus strains isolated from wild birds in Korea. Virus Genes 2018; 54:397-405. [PMID: 29582231 DOI: 10.1007/s11262-018-1550-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2017] [Accepted: 03/06/2018] [Indexed: 11/28/2022]
Abstract
Wild birds are natural hosts and reservoirs for influenza A viruses. However, many species, such as many waterfowl, are asymptomatic when infected and so facilitate the generation of viral genetic diversity. Mutations of key genes affect the replicability, pathogenicity, transmissibility, and antiviral resistance of influenza A viruses. In this study, we isolated avian influenza (AI) viruses from wild bird fecal samples and analyzed changes in amino acids over time and geographic region to monitor the biological change of the AI virus. Between 2014 and 2016, we collected 38,921 fresh fecal samples from major wild bird habitats located throughout Korea and isolated 123 AI viruses. We subsequently selected 22 amino acid sites to analyze for changes. These sites included ten sites associated with replication, ten sites associated with pathogenicity, three sites associated with transmission, and seven sites associated with antiviral resistance. We found substitution rates of 71.7% at the C38Y amino acid site within the polymerase basic protein 1 (PB1) gene, 66.7% at the D222G site within the hemagglutinin (HA) 1 gene, and 75.6% at the A184 site within the nucleoprotein (NP) gene. Alterations of the PB1, HA1, and NP genes are closely associated with increased pathogenicity in chickens and mammals. The remaining sites of interest exhibited few modifications. In this study, we confirmed that AI viruses circulating among wild birds in Korea consistently exhibit modifications at amino acid sites linked with replication and pathogenicity.
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Affiliation(s)
- Kwang-Hyun Oh
- Avian Disease Laboratory, College of Veterinary Medicine, Chungbuk National University, Cheongju, 28644, Korea
| | - Jong-Suk Mo
- Avian Disease Laboratory, College of Veterinary Medicine, Chungbuk National University, Cheongju, 28644, Korea
| | - Yeon-Ji Bae
- Avian Disease Laboratory, College of Veterinary Medicine, Chungbuk National University, Cheongju, 28644, Korea
| | - Seung-Baek Lee
- Avian Disease Laboratory, College of Veterinary Medicine, Chungbuk National University, Cheongju, 28644, Korea
| | - Van Dam Lai
- Avian Disease Laboratory, College of Veterinary Medicine, Chungbuk National University, Cheongju, 28644, Korea
| | - Seung-Jun Wang
- Environmental Health Research Division, National Institute of Environmental Research, Incheon, Korea
| | - In-Pil Mo
- Avian Disease Laboratory, College of Veterinary Medicine, Chungbuk National University, Cheongju, 28644, Korea.
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17
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Serological evidence of H5-subtype influenza A virus infection in indigenous avian and mammalian species in Korea. Arch Virol 2017; 163:649-657. [PMID: 29204739 DOI: 10.1007/s00705-017-3655-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Accepted: 10/11/2017] [Indexed: 01/09/2023]
Abstract
In Korea, H5-subtype highly pathogenic avian influenza (HPAI) has caused huge economic losses in poultry farms through outbreaks of H5N1 since 2003, H5N8 since 2013 and H5N6 since 2016. Although it was reported that long-distance migratory birds may play a major role in the global spread of avian influenza viruses (AIVs), transmission from such birds to poultry has not been confirmed. Intermediate hosts in the wild also may be a potential factor in viral transmission. Therefore, a total of 367 serum samples from wild animals were collected near major migratory bird habitats from 2011 to 2016 and tested by AIV-specific blocking ELISA and hemagglutination inhibition (HI) test. Two mammalian and eight avian species were seropositive according to the ELISA test. Among these, two mammalian (Hydropotes inermis and Prionailurus bengalensis) and three avian (Aegypius monachus, Cygnus cygnus, and Bubo bubo) species showed high HI titres (> 1,280) against one or two H5-subtype AIVs. As H. inermis (water deer), P. bengalensis (leopard cat), and B. bubo (Eurasian eagle owl) are indigenous animals in Korea, evidence of H5-subtype AIV in these animals implies that continuous monitoring of indigenous animals should be followed to understand interspecies transmission ecology of H5-subtype influenza viruses.
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