Photodegradation in terrestrial ecosystems

The first step in carbon (C) turnover, where senesced plant biomass is converted through various pathways into compounds that are released to the atmosphere or incorporated into the soil, is termed litter decomposition. This review is focused on recent advances of how solar radiation can affect this important process in terrestrial ecosystems. We explore the photochemical degradation of plant litter and its consequences for biotic decomposition and C cycling. The ubiquitous presence of lignin in plant tissues poses an important challenge for enzymatic litter decomposition due to its biological recalcitrance, creating a substantial bottleneck for decomposer organisms. The recognition that lignin is also photolabile and can be rapidly altered by natural doses of sunlight to increase access to cell wall carbohydrates and even bolster the activity of cell wall degrading enzymes highlights a novel role for lignin in modulating rates of litter decomposition. Lignin represents a key functional connector between photochemistry and biochemistry with important consequences for our understanding of how sunlight exposure may affect litter decomposition in a wide range of terrestrial ecosystems. A mechanistic understanding of how sunlight controls litter decomposition and C turnover can help inform management and other decisions related to mitigating human impact on the planet.

Dynamics of dissolved inorganic carbon (DIC) and stable C isotope ratios (δ13CDIC) in a tropical watershed with diversified land use in São Paulo State, Brazil

The fluvial transport of dissolved inorganic carbon (DIC) is an important component of the global carbon cycle. Herein, we assessed the dynamics of DIC and the C stable isotopic composition (δ13CDIC) in a watershed with diversified land use in São Paulo State (Brazil), more specifically in the Sorocaba River basin (SRB) and considered the temporal and spatial scales. For this purpose, twelve fluvial samples at each sampling point (e.g., S1, S2, S3, S4 and S5) were collected in the SRB, from June 2009 to May 2010, which represented one complete hydrological cycle that included the extremes of the rainfall and discharge regimes. In addition, the δ13CDIC values were also characterized in the wet and dry season at all sampling points to verify their seasonal variability. The results reflected the seasonal variation in discharges, water temperatures, and electrical conductivities. Most of the DIC was transported in the wet season at all sampling points, where the less negative δ13CDIC values were characterized. The natural sources of DIC are associated with atmospheric/soil CO2 consumption. The anthropogenic impacts on both [DIC] and δ13CDIC are linked to untreated urban sewage that is discharged directly into the Sorocaba River, as well as to aquatic photosynthesis in the Itupararanga Reservoir. From 1970 to 2020, the modeling proposed in this study indicated that the annual flux of DIC (Friver) varied from 9.0 to 78.7 t km-2 a-1, confirming that the El Niño Southern Oscillation (ENSO) controlled Friver in the SRB, with higher and lower Friver values occurring during strong El Niño (EN) and La Niña (LN) years. The average Friver value was 20 t km-2 a-1, which is higher than those obtained in natural several temperate and tropical watersheds due to the influences of urban areas on [DIC] in the SRB.

Ecology: The Patagonian Sun Dance

Recent field experiments show how photodegradation and its legacy, increased microbial access to labile carbohydrates (photofacilitation), double rates of C loss to the atmosphere in a Mediterranean-type climate. The mechanisms demonstrated have implications for global C modeling beyond Mediterranean ecosystems.

The composition difference of macrophyte litter-derived dissolved organic matter by photodegradation and biodegradation: Role of reactive oxygen species on refractory component

The overgrowth of macrophytes has become serious due to increasing eutrophication in shallow lakes. The primary degradation processes of macrophytes litter, including photodegradation and biodegradation, induce considerable patchiness in the concentration and bioavailability of dissolved organic matter (DOM). In this study we investigated the composition evolution of DOM derived from emergent aquatic plant litter, Phragmites australis, in microbial degradation, photodegradation, and the combination of bio- and photo-degradation. Results revealed that the effects of photo- and biodegradation on the composition difference of macrophyte litter-derived DOM during short- and long-term degradation phase were different. Although large changes in DOM were observed after five days of incubation, the abundance and chemical composition were similar in the three treatments. However, more concentration of DOM was produced by combined photo- and biodegradation at the long-term degradation phase, and the composition of DOM showed less lignin-like formulae, as well as less condensed aromatic and aromatic compounds when compared to sole treatments. More reactive oxygen species (ROS) were found under the combined treatments, thus the contents of refractory components (condensed aromatic- and aromatic compound groups) were reduced. This study provide deeper insight into the fate of DOM and relevant biogeochemical processes in eutrophic lakes.

Beach-cast seagrass wrack contributes substantially to global greenhouse gas emissions

Seagrass ecosystems have received a great deal of attention recently for their ability to capture and store carbon, thereby helping to mitigate climate change. However, their carbon-sink capacity could be offset somewhat if exported plant material - which accounts for ∼90% of total leaf production - undergoes microbial breakdown and is emitted into the atmosphere as a greenhouse gas. Here we measured emissions (CO₂ and CH₄) from the breakdown of exported seagrass plant material, focusing on beach-cast 'wrack'. We tested two seagrass species; Zostera nigricaulis and Amphibolis antarctica, which have contrasting morphologies and chemistries. We found that both species of wrack were substantial sources of CO₂, but not CH₄, during the decomposition process. Biomass loss and the coinciding CO₂ emissions occurred over the 30-day experiment, and the pattern of CO₂ emissions over this time followed a double exponential model (R² > 0.92). The initial flux rate was relatively high, most likely due to rapid leaching of labile compounds, then decreased substantially within the 2-9 days, and stabilizing at < 3 μmol g^-1 d^-1 during the remaining decomposition period. Additionally, seagrass wrack cast high up on beaches that remained dry had 72% lower emissions than wrack that was subjected to repeated wetting in the intertidal zone. This implies that relocation of seagrass wrack by coastal resource managers (e.g. from water's edge to drier dune areas) could help to reduce atmospheric CO₂ emissions. Scaling up, we estimate the annual CO₂-C flux from seagrass wrack globally is between 1.31 and 19.04 Tg C yr^-1, which is equivalent to annual emissions of 0.63-9.19 million Chinese citizens. With climate change and increasing coastal development expected to accelerate the rate of wrack accumulation on beaches, this study provides timely information for developing coastal carbon budgets.

Microalgae-bacteria models evolution: From microalgae steady-state to integrated microalgae-bacteria wastewater treatment models - A comparative review

The search for environmentally neutral alternative fuels had revived the interest for microalgae-bacteria wastewater treatment systems. The potential achieving of bioproducts from microalgae biomass has also greatly contributed. The reactions that occur in these systems are complex, and the degree of scientific knowledge is still scarce compared to that of conventional bacteria wastewater treatments. Mathematical models offer a great opportunity to study the simultaneous effect of the multiple factors affecting microalgae and bacteria, thus allowing for the prediction of final biomass production, and contributing to the system design optimization in terms of operation and control. During the last decades, numerous models describing microalgae growth have been proposed. However, a lower number of integral models considering microalgae as well as bacteria is available. In this paper, the evolution of microalgae models from simple steady-state models (usually dependent on one factor) to more complex dynamic models (with two or more factors) has been revised. A summary of integrated microalgae-bacteria models has been reviewed, outlining their main features and presenting their processes and value parameters. Eventually, a critical discussion on integrated models has been put forward.

Widespread production of nonmicrobial greenhouse gases in soils

Carbon dioxide (CO₂ ), methane (CH₄ ), and nitrous oxide (N₂ O) are the three most important greenhouse gases (GHGs), and all show large uncertainties in their atmospheric budgets. Soils of natural and managed ecosystems play an extremely important role in modulating their atmospheric abundance. Mechanisms underlying the exchange of these GHGs at the soil-atmosphere interface are often assumed to be exclusively microbe-mediated (M-GHGs). We argue that it is a widespread phenomenon for soil systems to produce GHGs through nonmicrobial pathways (NM-GHGs) based on a review of the available evidence accumulated over the past half century. We find that five categories of mechanistic process, including photodegradation, thermal degradation, reactive oxidative species (ROS) oxidation, extracellular oxidative metabolism (EXOMET), and inorganic chemical reactions, can be identified as accounting for their production. These pathways are intricately coupled among themselves and with M-GHGs production and are subject to strong influences from regional and global change agents including, among others, climate warming, solar radiation, and alterations of atmospheric components. Preliminary estimates have suggested that NM-GHGs could play key roles in contributing to budgets of GHGs in the arid regions, whereas their global importance would be enhanced with accelerated global environmental changes. Therefore, more research should be undertaken, with a differentiation between NM-GHGs and M-GHGs, to further elucidate the underlying mechanisms, to investigate the impacts of various global change agents, and to quantify their contributions to regional and global GHGs budgets. These efforts will contribute to a more complete understanding of global carbon and nitrogen cycling and a reduction in the uncertainty of carbon-climate feedbacks in the Earth system.

Mass loss and chemical structures of wheat and maize straws in response to ultraviolet-B radiation and soil contact

The role of photodegradation, an abiotic process, has been largely overlooked during straw decomposition in mesic ecosystems. We investigated the mass loss and chemical structures of straw decomposition in response to elevated UV-B radiation with or without soil contact over a 12-month litterbag experiment. Wheat and maize straw samples with and without soil contact were exposed to three radiation levels: a no-sunlight control, ambient solar UV-B, and artificially elevated UV-B radiation. A block control with soil contact was not included. Compared with the no-sunlight control, UV-B radiation increased the mass loss by 14–19% and the ambient radiation by 9–16% for wheat and maize straws without soil contact after 12 months. Elevated UV-B exposure decreased the decomposition rates of both wheat and maize straws when in contact with soil. Light exposure resulted in decreased O-alkyl carbons and increased alkyl carbons for both the wheat and maize straws compared with no-sunlight control. The difference in soil contact may influence the contribution of photodegradation to the overall straw decomposition process. These results indicate that we must take into account the effects of photodegradation when explaining the mechanisms of straw decomposition in mesic ecosystems.

Temperature Dependence of Photodegradation of Dissolved Organic Matter to Dissolved Inorganic Carbon and Particulate Organic Carbon

Photochemical transformation of dissolved organic matter (DOM) has been studied for more than two decades. Usually, laboratory or “in-situ” experiments are used to determine photodegradation variables. A common problem with these experiments is that the photodegradation experiments are done at higher than ambient temperature. Five laboratory experiments were done to determine the effect of temperature on photochemical degradation of DOM. Experimental results showed strong dependence of photodegradation on temperature. Mathematical modeling of processes revealed that two different pathways engaged in photochemical transformation of DOM to dissolved inorganic carbon (DIC) strongly depend on temperature. Direct oxidation of DOM to DIC dominated at low temperatures while conversion of DOM to intermediate particulate organic carbon (POC) prior to oxidation to DIC dominated at high temperatures. It is necessary to consider this strong dependence when the results of laboratory experiments are interpreted in regard to natural processes. Photodegradation experiments done at higher than ambient temperature will necessitate correction of rate constants.

The interaction between abiotic photodegradation and microbial decomposition under ultraviolet radiation

Elevated ultraviolet (UV) radiation has been demonstrated to stimulate litter decomposition. Despite years of research, it is still not fully understood whether the acceleration in litter degradation is primarily attributed to abiotic photodegradation or the combined effects of abiotic photodegradation and microbial decomposition. In this study, we used meta-analysis to synthesize photodegradation studies and compared the effects of UV radiation on litter decomposition between abiotic and biotic conditions. We also conducted a microcosm experiment to assess the effects of UV radiation on litter biodegradability and microbial activity. Overall, our meta-analysis found that under abiotic photodegradation, UV radiation reduced the remaining litter mass by 1.44% (95% CI: 0.85% to 2.08%), did not affect the remaining lignin and increased the dissolved organic carbon (DOC) concentration by 14.01% (1.49-23.67%). Under combined abiotic photodegradation and microbial decomposition, UV radiation reduced the remaining litter mass and lignin by 1.60% (0.04-3.58%) and 16.07% (9.27-24.23%), respectively, but did not alter DOC concentration. UV radiation had no significant impact on soil microbial biomass carbon (MBC), but it reduced microbial respiration by 44.91% (2.26-78.62%) and altered the composition of the microbial community. In addition, UV radiation reduced nitrogen (N) immobilization by 19.44% (4.77-37.92%). Our microcosm experiment further indicated that DOC concentration and the amount of respired C in UV-treated litter increased with UV exposure time, suggesting that longer UV exposure resulted in greater biodegradability. Overall, our study suggested that UV exposure could increase litter biodegradability by increasing the microbial accessibility of lignin, as well as the labile carbon supply to microbes. However, the remaining litter mass was not different between the abiotic and biotic conditions, most likely because the positive effect of UV radiation on litter biodegradability was offset by its negative effect on microbial activity. Our results also suggested that UV radiation could alter the N cycle during decomposition, primarily by inhibiting N immobilization.

Dual role of lignin in plant litter decomposition in terrestrial ecosystems

Plant litter decomposition is a critical step in the formation of soil organic matter, the mineralization of organic nutrients, and the carbon balance in terrestrial ecosystems. Biotic decomposition in mesic ecosystems is generally negatively correlated with the concentration of lignin, a group of complex aromatic polymers present in plant cell walls that is recalcitrant to enzymatic degradation and serves as a structural barrier impeding microbial access to labile carbon compounds. Although photochemical mineralization of carbon has recently been shown to be important in semiarid ecosystems, litter chemistry controls on photodegradative losses are not understood. We evaluated the importance of litter chemistry on photodegradation of grass litter and cellulose substrates with varying levels of lignin [cellulose-lignin (CL) substrates] under field conditions. Using wavelength-specific light attenuation filters, we found that light-driven mass loss was promoted by both UV and visible radiation. The spectral dependence of photodegradation correlated with the absorption spectrum of lignin but not of cellulose. Field incubations demonstrated that increasing lignin concentration reduced biotic decomposition, as expected, but linearly increased photodegradation. In addition, lignin content in CL substrates consistently decreased in photodegradative incubations. We conclude that lignin has a dual role affecting litter decomposition, depending on the dominant driver (biotic or abiotic) controlling carbon turnover. Under photodegradative conditions, lignin is preferentially degraded because it acts as an effective light-absorbing compound over a wide range of wavelengths. This mechanistic understanding of the role of lignin in plant litter decomposition will allow for more accurate predictions of carbon dynamics in terrestrial ecosystems.

Oxygen demand during mineralization of aquatic macrophytes from an oxbow lake

This study presents a kinetic model of oxygen consumption during aerobic decomposition of detritus from seven species of aquatic macrophytes: Cabomba furcata, Cyperus giganteus, Egeria najas, Eichhornia azurea, Salvinia auriculata, Oxycaryum cubense and Utricularia breviscapa. The aquatic macrophytes were collected from Óleo Lagoon situated in the Mogi-Guaçu river floodplain (SP, Brazil). Mineralization experiments were performed using the closed bottles method. Incubations made with lake water and macrophytes detritus (500 mL and 200 mg.L-1 (DM), respectively) were maintained during 45 to 80 days at 20 °C under aerobic conditions and darkness. Carbon content of leachates from aquatic macrophytes detritus and dissolved oxygen concentrations were analyzed. From the results we concluded that: i) the decomposition constants differ among macrophytes; these differences being dependent primarily on molecular and elemental composition of detritus and ii) in the short term, most of the oxygen demand seems to depend upon the demineralization of the dissolved carbon fraction.

Plant litter decomposition in a semi-arid ecosystem controlled by photodegradation

The carbon balance in terrestrial ecosystems is determined by the difference between inputs from primary production and the return of carbon to the atmosphere through decomposition of organic matter. Our understanding of the factors that control carbon turnover in water-limited ecosystems is limited, however, as studies of litter decomposition have shown contradictory results and only a modest correlation with precipitation. Here we evaluate the influence of solar radiation, soil biotic activity and soil resource availability on litter decomposition in the semi-arid Patagonian steppe using the results of manipulative experiments carried out under ambient conditions of rainfall and temperature. We show that intercepted solar radiation was the only factor that had a significant effect on the decomposition of organic matter, with attenuation of ultraviolet-B and total radiation causing a 33 and 60 per cent reduction in decomposition, respectively. We conclude that photodegradation is a dominant control on above-ground litter decomposition in this semi-arid ecosystem. Losses through photochemical mineralization may represent a short-circuit in the carbon cycle, with a substantial fraction of carbon fixed in plant biomass being lost directly to the atmosphere without cycling through soil organic matter pools. Furthermore, future changes in radiation interception due to decreased cloudiness, increased stratospheric ozone depletion, or reduced vegetative cover may have a more significant effect on the carbon balance in these water-limited ecosystems than changes in temperature or precipitation.

Model studies of zinc bonding with humic acid in the presence of UV-VIS-NIR radiation

Model experiments were performed to determine the influence of UV-VIS-NIR radiation on zinc bonded with humic acid (HA). The samples of HA or HA-65Zn radioisotope were overlayed on quartz sand in a glass column and subjected to elution that simulated natural conditions. The zinc concentration was chosen to that occurring in the sewage of the Central Sewage Work in Poznań. Zinc was washed with water to simulate the influence of rain. The recovery of injected radiotraces ions in the eluates was found to depend on pH, zinc and HA concentrations and on radiation exposure. The results help to evaluate the migration behavior of zinc in the presence of HA and UV-VIS-NIR radiation. From the first part of the investigation appears that radiation induces a degradation of HA-Zn layer and that the degradation process depends on pH of the environment. A decrease in pH causes an increase in photodegradation and the degree of zinc binding in the humic layer. Simultaneously, the ultra-weak luminescence (UWL) of plants was monitored to estimate the influence of zinc and HA on their development. The results show effects of HA and zinc on UWL and growth of bean and watercress which characterize the rate of plants metabolism and perturbation of their homeostasis. It was observed that high concentrations of zinc ions and HA considerably affect the development process of the plants.

Interactive effects of ozone depletion and climate change on biogeochemical cycles

The effects of ozone depiction on global biogeochemical cycles, via increased UV-B radiation at the Earth's surface, have continued to be documented over the past 4 years. In this report we also document various effects of UV-B that interact with global climate change because the detailed interactions between ozone depletion and climate change are central to the prediction and evaluation of future Earth environmental conditions. There is increasing evidence that elevated UV-B has significant effects on the terrestrial biosphere with important implications for the cycling of carbon, nitrogen and other elements. Increased UV has been shown to induce carbon monoxide production from dead plant matter in terrestrial ecosystems, nitrogen oxide production from Arctic and Antarctic snowpacks, and halogenated substances from several terrestrial ecosystems. New studies on UV effects on the decomposition of dead leaf material confirm that these effects are complex and species-specific. Decomposition can be retarded, accelerated or remain unchanged. It has been difficult to relate effects of UV on decomposition rates to leaf litter chemistry, as this is very variable. However, new evidence shows UV effects on some fungi, bacterial communities and soil fauna that could play roles in decomposition and nutrient cycling. An important new result is that not only is nitrogen cycling in soils perturbed significantly by increased UV-B, but that these effects persist for over a decade. As nitrogen cycling is temperature dependent, this finding clearly links the impacts of ozone depletion to the ability of plants to use nitrogen in a warming global environment. There are many other potential interactions between UV and climate change impacts on terrestrial biogeochemical cycles that remain to be quantified. There is also new evidence that UV-B strongly influences aquatic carbon, nitrogen, sulfur, and metals cycling that affect a wide range of life processes. UV-B accelerates the decomposition of colored dissolved organic matter (CDOM) entering the sea via terrestrial runoff, thus having important effects on oceanic carbon cycle dynamics. Since UV-B influences the distribution of CDOM, there is an impact of UV-B on estimates of oceanic productivity based on remote sensing of ocean color. Thus, oceanic productivity estimates based on remote sensing require estimates of CDOM distributions. Recent research shows that UV-B transforms dissolved organic matter to dissolved inorganic carbon and nitrogen, including carbon dioxide and ammonium and to organic substances that are either more or less readily available to micro-organisms. The extent of these transformations is correlated with loss of UV absorbance by the organic matter. Changes in aquatic primary productivity and decomposition due to climate-related changes in circulation and nutrient supply, which occur concurrently with increased UV-B exposure, have synergistic influences on the penetration of light into aquatic ecosystems. New research has confirmed that UV affects the biological availability of iron, copper and other trace metals in aquatic environments thus potentially affecting the growth of phytoplankton and other microorganisms that are involved in carbon and nitrogen cycling. There are several instances where UV-B modifies the air sea exchange of trace gases that in turn alter atmospheric chemistry, including the carbon cycle.