A review of multi-disciplinary decomposition research and key drivers of variation in decay

The decomposition of animal remains is a multifaceted process, involving ecological, biological, and chemical interactions. While the complexity is acknowledged through concepts like the necrobiome, it's unclear if this complexity is reflected in research. Appreciation of the complexity of decomposition is crucial for identifying sources of variation in estimations of time since death in medico-legal science, as well as building broader ecological knowledge of the decomposition process. To gain insights into the extent of multidisciplinary research in the field of decomposition science, we conducted an examination of peer-reviewed literature on four key drivers of variation: volatile organic compounds, microbes, drugs/toxins, and insects. Among 650 articles, we identified their scientific discipline, driver/s of variation investigated, and year of publication. We found that 19% explored relationships between two drivers, while only 4% investigated interactions between three. None considered all four drivers. Over the past three decades, there has been a steady increase in decomposition research publications, signifying its growing importance. Most research (79%) was linked to forensic science, highlighting opportunities for interdisciplinary collaboration in decomposition science. Overall, our review underscores the need to incorporate multidisciplinary approaches and theory into contemporary decomposition research.

Scavenging with invasive species

Carrion acts as a hotspot of animal activity within many ecosystems globally, attracting scavengers that rely on this food source. However, many scavengers are invasive species whose impacts on scavenging food webs and ecosystem processes linked to decomposition are poorly understood. Here, we use Australia as a case study to review the extent of scavenging by invasive species that have colonised the continent since European settlement, identify the factors that influence their use of carcasses, and highlight the lesser-known ecological effects of invasive scavengers. From 44 published studies we identified six invasive species from 48 vertebrates and four main groups of arthropods (beetles, flies, ants and wasps) that scavenge. Invasive red foxes (Vulpes vulpes), domestic dogs (Canis familiaris), feral pigs (Sus scrofa), black rats (Rattus rattus) and feral cats (Felis catus) were ranked as highly common vertebrate scavengers. Invasive European wasps (Vespula germanica) are also common scavengers where they occur. We found that the diversity of native vertebrate scavengers is lower when the proportion of invasive scavengers is higher. We highlight that the presence of large (apex) native vertebrate scavengers can decrease rates of scavenging by invasive species, but that invasive scavengers can monopolise carcass resources, outcompete native scavengers, predate other species around carcass resources and even facilitate invasion meltdowns that affect other species and ecological processes including altered decomposition rates and nutrient cycling. Such effects are likely to be widespread where invasive scavengers occur and suggest a need to determine whether excessive or readily available carcass loads are facilitating or exacerbating the impacts of invasive species on ecosystems globally.

Global change influences scavenging and carrion decomposition

Carrion decomposition is fundamental to nutrient cycling in terrestrial ecosystems because it provides a high-quality resource to diverse organisms. A conceptual framework incorporating all phases of carrion decomposition with the full community of scavengers is needed to predict the effects of global change on core ecosystem processes. Because global change can differentially impact scavenger guilds and rates of carrion decomposition, our framework explicitly incorporates complex interactions among microbial, invertebrate, and vertebrate scavenger communities across three distinct phases of carcass decomposition. We hypothesize that carrion decomposition rates will be the most impacted when global change affects carcass discovery rates and the foraging behavior of competing scavenger guilds.

The gut microbiome mediates adaptation to scarce food in Coleoptera

Beetles are ubiquitous cave invertebrates worldwide that adapted to scarce subterranean resources when they colonized caves. Here, we investigated the potential role of gut microbiota in the adaptation of beetles to caves from different climatic regions of the Carpathians. The beetles' microbiota was host-specific, reflecting phylogenetic and nutritional adaptation. The microbial community structure further resolved conspecific beetles by caves suggesting microbiota-host coevolution and influences by local environmental factors. The detritivore species hosted a variety of bacteria known to decompose and ferment organic matter, suggesting turnover and host cooperative digestion of the sedimentary microbiota and allochthonous-derived nutrients. The cave Carabidae, with strong mandibula, adapted to predation and scavenging of animal and plant remains, had distinct microbiota dominated by symbiotic lineages Spiroplasma or Wolbachia. All beetles had relatively high levels of fermentative Carnobacterium and Vagococcus involved in lipid accumulation and a reduction of metabolic activity, and both features characterize adaptation to caves.

Qualitative Analyses of Textile Damage (Cuts and Tears) Applied to Fabrics Exposed to the Decomposition of Carcasses and Associated Insect Activity in an Austral Summer

Fatal stabbings are the leading cause of homicide in countries with restricted access to firearms, such as Australia. The analysis of damage on clothing imparted by a sharp object can assist in the characterization of the weapon. However, decomposition and carrion insects can modify the features of the damage, impeding textile damage analysis and crime reconstruction. This study aimed to identify and characterize the modifications of textile damage over 47 days of decomposition during the summer season in Western Australia. Fabric modifications were analyzed on cotton, synthetic, and blended fabrics with standardized cuts and tears, wrapped on 99 stillborn piglets. Six unclothed piglets acted as controls, with three being stabbed. All piglets were placed simultaneously in the field alongside swatches of fabric. Analyses considered taphonomy, insect interactions, and any textile damage using optical microscopy and SEM. The results showed that carrion insects can modify existing cuts and tears and introduce new artifacts on textiles. The 100% cotton fabric was the most affected by mechanical and chemical degradation, especially cuts and areas stained with blood or decomposition fluids. The study highlights the combined effect of multiple factors on textile damage, including the type of fabric, initial damage, bloating, insect activity, and biodegradation.

Ambient and substrate energy influence decomposer diversity differentially across trophic levels

The species-energy hypothesis predicts increasing biodiversity with increasing energy in ecosystems. Proxies for energy availability are often grouped into ambient energy (i.e., solar radiation) and substrate energy (i.e., non-structural carbohydrates or nutritional content). The relative importance of substrate energy is thought to decrease with increasing trophic level from primary consumers to predators, with reciprocal effects of ambient energy. Yet, empirical tests are lacking. We compiled data on 332,557 deadwood-inhabiting beetles of 901 species reared from wood of 49 tree species across Europe. Using host-phylogeny-controlled models, we show that the relative importance of substrate energy versus ambient energy decreases with increasing trophic levels: the diversity of zoophagous and mycetophagous beetles was determined by ambient energy, while non-structural carbohydrate content in woody tissues determined that of xylophagous beetles. Our study thus overall supports the species-energy hypothesis and specifies that the relative importance of ambient temperature increases with increasing trophic level with opposite effects for substrate energy.

Decomposition and insect succession of pig cadavers in tents versus outdoors - A preliminary study

The pattern of insect succession and the species composition on cadavers can be influenced by several parameters, one of which is concealment. It has been previously shown for cadavers inside containers (e.g. suitcases or vehicles) or various indoor situations, that concealment can lead to a delayed arrival, altered species composition and decreased number of taxa present at the cadaver. As no data is yet available for the specific environment of tents on these processes, we placed five pig cadavers inside closed two-person tents during the summer of 2021 in a mixed forest in Germany. Five control cadavers were freely accessible for insects. To minimize disturbances, tents were only opened every fifth day over a period of 25 days for estimating the temperature profiles, insect diversity and quantification of the cadavers' decomposition using the total body score (TBS). The temperature inside the tents was only slightly elevated compared to the ambient temperature during the study. Although the tents prevented direct access of adult flies and beetles, the cadavers were colonized because the flies oviposited on the zippers and fly screens of the inner tents. However, the resulting infestation of the cadavers by fly larvae was reduced and delayed, compared to the exposed cadavers. The dominant fly species on both the tent and exposed cadavers was the blow fly Lucilia caesar. Open cadavers showed the expected decomposition patterns with large larval masses. 25 days after placement, only bones and hair remained from the exposed pigs (TBS = 32), while most of the tissue of the cadavers inside the tents was still present (TBS = 22.5) and post feeding larvae were not able to leave the tents. Regarding the attraction of beetles to both treatments, open cadavers were predominately colonized by the silphid Oiceoptoma thoracicum, while the silphid Necrodes littoralis was the most dominant species in the pitfall traps surrounding the tents. Considering the prolonged pre-appearance interval of fly larvae colonizing the cadavers inside tents, the entomological evidence of forensic cases dealing with concealed bodies should be handled with caution, since the post mortem interval might be significantly underestimated.

Initial herbivory and exposure to herbivory-induced volatiles enhance arthropod species richness by diversifying community assemblages

Plant ecological traits affect the species identity of plant-colonizing arthropods, which in turn induces species-specific trait changes in plants, forming feedback between plants and arthropods. Such feedback can amplify initial differences in species composition, leading to large variations (i.e., high β diversity). We hypothesized that the differences in plant initial conditions have sustained effects on arthropod community composition and species richness. To test this hypothesis, we monitored arthropod community assembly on a willow tree species, Salix eriocarpa, which was experimentally manipulated into three initial treatments: undamaged (in chamber 1); damaged by the specialist leaf beetle, Plagiodera versicolora (chamber 2); and “exposed” plants that were undamaged but were exposed to volatiles from damaged plants (in chamber 2). The arrival and population dynamics of the leaf beetle were affected by the plant’s initial condition (chamber 1 vs. 2), which could result from the microscale environmental heterogeneity between chambers (chamber effect) and/or from the herbivory-related impacts (direct herbivory and exposure to induced volatiles in chamber 2). The community composition on damaged and exposed plants became significantly different on day 32. In addition, the divergence in composition between plant individuals was significantly smaller in undamaged plants (chamber 1) than in damaged and exposed plants (chamber 2) on day 60. The compositional variations (β diversity) between chambers, between treatments, and between days, comprised a large proportion (two third) of the total species richness (γ diversity) in the whole community of arthropods. These results suggest that plant initial condition is a key driver of community assembly and the maintenance of species diversity.

Identification and Characterization of Small RNA Markers of Age in the Blow Fly Cochliomyia macellaria (Fabricius) (Diptera: Calliphoridae)

Blow fly development is important in decomposition ecology, agriculture, and forensics. Much of the impact of these species is from immature samples, thus knowledge of their development is important to enhance or ameliorate their effects. One application of this information is the estimation of immature insect age to provide temporal information for death investigations. While traditional markers of age such as stage and size are generally accurate, they lack precision in later developmental stages. We used miRNA sequencing to measure miRNA expression, throughout development, of the secondary screwworm, Cochliomyia macellaria (Fabricius) (Diptera: Calliphoridae) and identified 217 miRNAs present across the samples. Ten were identified to be significantly differentially expressed in larval samples and seventeen were found to be significantly differentially expressed in intrapuparial samples. Twenty-eight miRNAs were identified to be differentially expressed between sexes. Expression patterns of two miRNAs, miR-92b and bantam, were qPCR-validated in intrapuparial samples; these and likely food-derived miRNAs appear to be stable markers of age in C. macellaria. Our results support the use of miRNAs for developmental markers of age and suggest further investigations across species and under a range of abiotic and biotic conditions.

How could climate change influence the distribution of the black soldier fly, Hermetiaillucens (Linnaeus) (Diptera, Stratiomyidae)?

The black soldier fly, Hermetiaillucens (Linnaeus, 1758), is a saprophagous species used to decompose organic matter. This study proposes a distribution model of H.illucens to illustrate its current and future distribution. The methodology includes data collection from the Global Biodiversity Information Facility (GBIF), complemented with iNaturalist, manual expert curation of occurrence records, six species distribution models algorithms and one ensemble model. The average temperature of the driest annual quarter and the precipitation of the coldest annual quarter were the key variables influencing the potential distribution of H.illucens. The distribution range is estimated to decrease progressively and their suitable habitats could change dramatically in the future due to global warming. On the other hand, current optimal habitats would become uninhabitable for the species, mainly at low latitudes. Under this scenario, the species is projected to move to higher latitudes and elevations in the future. The results of this study provide data on the distribution of H.illucens, facilitating its location, management and sustainable use in current and future scenarios.

Linking bacteria, volatiles and insects on carrion: the role of temporal and spatial factors regulating inter-kingdom communication via volatiles

Multi-kingdom community complexity and the chemically mediated dynamics between bacteria and insects have recently received increased attention in carrion research. However, the strength of these inter-kingdom interactions and the factors that regulate them are poorly studied. We used 75 piglet cadavers across three forest regions to survey the relationship between three actors (epinecrotic bacteria, volatile organic compounds (VOCs) and flies) during the first 4 days of decomposition and the factors that regulate this interdependence. The results showed a dynamic bacterial change during decomposition (temperature-time index) and across the forest management gradient, but not between regions. Similarly, VOC emission was dynamic across a temperature-time index and the forest management gradient but did not differ between regions. However, fly occurrence was dynamic across both space and time. The strong interdependence between the three actors was mainly regulated by the temperature-time index and the study regions, thereby revealing regulation at temporal and spatial scales. Additionally, the actor interdependence was stable across a gradient of forest management intensity. By combining different actors of decomposition, we have expanded our knowledge of the holistic mechanisms regulating carrion community dynamics and inter-kingdom interactions, an important precondition for better describing food web dynamics and entire ecosystem functions.

Passive directed dispersal of plants by animals

Conceptual gaps and imprecise terms and definitions may obscure the breadth of plant-animal dispersal relationships involved in directed dispersal. The term 'directed' indicates predictable delivery to favourable microsites. However, directed dispersal was initially considered uncommon in diffuse mutualisms (i.e. those involving many species), partly because plants rarely influence post-removal propagule fate without specialized adaptations. This rationale implies that donor plants play an active role in directed dispersal by manipulating vector behaviour after propagule removal. However, even in most classic examples of directed dispersal, participating plants do not influence animal behaviour after propagule removal. Instead, such plants may take advantage of vector attraction to favourable plant microsites, indicating a need to expand upon current interpretations of directed dispersal. We contend that directed dispersal can emerge whenever propagules are disproportionately delivered to favourable microsites as a result of predictably skewed vector behaviour. Thus, we propose distinguishing active and passive forms of directed dispersal. In active directed dispersal, the donor plant achieves disproportionate arrival to favourable microsites by influencing vector behaviour after propagule removal. By contrast, passive directed dispersal occurs when the donor plant takes advantage of vector behaviour to arrive at favourable microsites. Whereas predictable post-removal vector behaviour is dictated by characteristics of the donor plant in active directed dispersal, characteristics of the destination dictate predictable post-removal vector behaviour in passive directed dispersal. Importantly, this passive form of directed dispersal may emerge in more plant-animal dispersal relationships because specialized adaptations in donor plants that influence post-removal vector behaviour are not required. We explore the occurrence and consequences of passive directed dispersal using the unifying generalized gravity model of dispersal. This model successfully describes vectored dispersal by incorporating the influence of the environment (i.e. attractiveness of microsites) on vector movement. When applying gravity models to dispersal, the three components of Newton's gravity equation (i.e. gravitational force, object mass, and distance between centres of mass) become analogous to propagules moving towards a location based on characteristics of the donor plant, the destination, and relocation processes. The generalized gravity model predicts passive directed dispersal in plant-animal dispersal relationships when (i) animal vectors are predictably attracted to specific destinations, (ii) animal vectors disproportionately disperse propagules to those destinations, and (iii) those destinations are also favourable microsites for the dispersed plants. Our literature search produced evidence for these three conditions broadly, and we identified 13 distinct scenarios where passive directed dispersal likely occurs because vector behaviour is predictably skewed towards favourable microsites. We discuss the wide applicability of passive directed dispersal to plant-animal mutualisms and provide new insights into the vulnerability of those mutualisms to global change.

Diverse Effects of Climate, Land Use, and Insects on Dung and Carrion Decomposition

Land-use intensification and climate change threaten ecosystem functions. A fundamental, yet often overlooked, function is decomposition of necromass. The direct and indirect anthropogenic effects on decomposition, however, are poorly understood. We measured decomposition of two contrasting types of necromass, rat carrion and bison dung, on 179 study sites in Central Europe across an elevational climate gradient of 168–1122 m a.s.l. and within both local and regional land uses. Local land-use types included forest, grassland, arable fields, and settlements and were embedded in three regional land-use types (near-natural, agricultural, and urban). The effects of insects on decomposition were quantified by experimental exclusion, while controlling for removal by vertebrates. We used generalized additive mixed models to evaluate dung weight loss and carrion decay rate along elevation and across regional and local land-use types. We observed a unimodal relationship of dung decomposition with elevation, where greatest weight loss occurred between 600 and 700 m, but no effects of local temperature, land use, or insects. In contrast to dung, carrion decomposition was continuously faster with both increasing elevation and local temperature. Carrion reached the final decomposition stage six days earlier when insect access was allowed, and this did not depend on land-use effect. Our experiment identified different major drivers of decomposition on each necromass form. The results show that dung and carrion decomposition are rather robust to local and regional land use, but future climate change and decline of insects could alter decomposition processes and the self-regulation of ecosystems.

Gene expression in Lucilia sericata (Diptera: Calliphoridae) larvae exposed to Pseudomonas aeruginosa and Acinetobacter baumannii identifies shared and microbe-specific induction of immune genes

Antibiotic resistance is a continuing challenge in medicine. There are various strategies for expanding antibiotic therapeutic repertoires, including the use of blow flies. Their larvae exhibit strong antibiotic and antibiofilm properties that alter microbiome communities. One species, Lucilia sericata, is used to treat problematic wounds due to its debridement capabilities and its excretions and secretions that kill some pathogenic bacteria. There is much to be learned about how L. sericata interacts with microbiomes at the molecular level. To address this deficiency, gene expression was assessed after feeding exposure (1 h or 4 h) to two clinically problematic pathogens: Pseudomonas aeruginosa and Acinetobacter baumannii. The results identified immunity-related genes that were differentially expressed when exposed to these pathogens, as well as non-immune genes possibly involved in gut responses to bacterial infection. There was a greater response to P. aeruginosa that increased over time, while few genes responded to A. baumannii exposure, and expression was not time-dependent. The response to feeding on pathogens indicates a few common responses and features distinct to each pathogen, which is useful in improving the wound debridement therapy and helps to develop biomimetic alternatives.

Balance between larval and pupal development time in carrion blowflies

Several studies have highlighted the impact of environmental factors such as food type or larval density on the development of blowfly larvae. We investigated how changes in development speed (due to larval density and group composition) are divided among feeding and post-feeding stages. Even if these parameters impinge only on feeding larvae, they may ultimately also affect their subsequent development, and especially metamorphosis duration. Therefore, this study analysed the effect of larval density and group composition on the rhythm of necrophagous blowfly development. Based on laboratory studies, we highlighted that Calliphora vicina individuals with a fast development during their feeding phase developed slower in the later post-feeding phase (i.e., they had a compensatory effect). Lucilia sericata, a calliphorid species also frequently found on carrion at the same time as C. vicina, showed a different developmental strategy by not making its post-larval development speed dependent on the larval development speed. Finally, while a compensatory effect may exist, variations in the development rate more often accumulate through life-stages and resulted in a larger variability for later development instars. In this respect, the inclusion of detailed development duration covering all life stages, including post-feeding, is recommended in future studies, especially those dedicated to forensic entomology.

Convergence of Social Strategies in Carrion Breeding Insects

Carrion is a highly ephemeral and nutrient rich resource, characterized by extreme biotic and abiotic stressors. We hypothesized that specific constraints of the carrion ecosystem, and especially its nutrient richness, ephemerality, and competition with microbes, have promoted the evolution of social behaviors in necrophagous insects. We show that group living is prevalent among early succession carrion breeding insects, suggesting that this trait has emerged as an adaptation to facilitate survival in the highly competitive environment of fresh carrion. We then highlight how developmental niche construction allows larvae to compete with microbes, efficiently feed on fresh cadavers, and rapidly reach maturity. We observed that larval societies and parental care are two different strategies responding to similar competitive and environmental constraints. We conclude that intra and interspecific competition on carrion are mitigated by social behavior.

Relative Roles of Blow Flies (Diptera: Calliphoridae) and Invasive Fire Ants (Hymenoptera: Formicidae: Solenopsis spp.) in Carrion Decomposition

Fire ants (Solenopsis spp.) have increasingly been reported from carrion in the southeastern United States and are now a part of the normal succession community. There have been previous observations of these ants altering carrion and preying on other carrion-attendant fauna; however, the overall effects of these activities on carrion decomposition rates, community composition, and blow fly larval development are poorly understood. Alteration of these ecological processes by fire ants could affect the forensic interpretation of entomological data. We conducted a study in Mississippi and Florida whereby portions of the succession fauna were excluded from access to pig carrion to study the relative effects of fire ants and blow flies on carrion decomposition and succession: a control with all fauna having access, a second treatment where fire ants and other geophilic taxa were excluded, and a third treatment in which blow flies and other large organisms were excluded. Fire ants inflicted lesions in the carrion, buried portions that touched the ground, and preyed on some members of the succession fauna. Their exclusion did not affect carrion decomposition rates that were measured but slightly affected the overall carrion community, and strongly affected the oviposition and development of blow flies. Despite the presence of fire ants early in the control, blow flies were eventually able to overcome predation of eggs and larvae, continue colonization, and complete development; however, the delay in the colonization of blow flies on carrion could affect the determination of postmortem intervals when development rates of blow flies are considered in the calculation.

Carcasses at Fixed Locations Host a Higher Diversity of Necrophilous Beetles

Simple Summary

Whereas vertebrate scavengers have a higher diversity reported at randomly placed carcasses, the drivers of insect diversity on carrion, such as the exposure type (fixed versus random) or the carrion species, are still incompletely understood. We analyzed beetle diversity at differently exposed carcasses in the low-range mountain forest of the Bavarian Forest National Park in Germany. We tested if scavenging beetles, similarly to vertebrate scavengers, show a higher diversity at randomly placed carcasses compared to easily manageable fixed places. Ninety-two beetle species at 29 exposed wildlife carcasses (roe, red deer, and red foxes) were detected. Beetle diversity was higher at fixed locations possessing extended highly nutrient-rich cadaver decomposition islands as important refuges for threatened red-listed species, such as Necrobia violacea (Coleoptera: Cleridae). Particularly noticeable in our insect traps were the following two rare species, the “primitive” carrion beetle Necrophilus subterraneus (Coleoptera: Agyrtidae) and the false clown beetle Sphaerites glabratus (Coleoptera: Sphaeritidae). In Europe, only the species S. glabratus out of the genus Sphaerites is present. This emphasizes the importance of carrion for biodiversity conservation. We clearly show the relevance of leaving and additional providing wildlife carcasses in a dedicated place in protected forests for preserving very rare and threatened beetle species as essential members of the decomposing community.

Abstract

In contrast to other necromass, such as leaves, deadwood, or dung, the drivers of insect biodiversity on carcasses are still incompletely understood. For vertebrate scavengers, a richer community was shown for randomly placed carcasses, due to lower competition. Here we tested if scavenging beetles similarly show a higher diversity at randomly placed carcasses compared to easily manageable fixed places. We sampled 12,879 individuals and 92 species of scavenging beetles attracted to 17 randomly and 12 at fixed places exposed and decomposing carcasses of red deer, roe deer, and red foxes compared to control sites in a low range mountain forest. We used rarefaction-extrapolation curves along the Hill-series to weight diversity from rare to dominant species and indicator species analysis to identify differences between placement types, the decay stage, and carrion species. Beetle diversity decreased from fixed to random locations, becoming increasingly pronounced with weighting of dominant species. In addition, we found only two indicator species for exposure location type, both representative of fixed placement locations and both red listed species, namely Omosita depressa and Necrobia violacea. Furthermore, we identified three indicator species of Staphylinidae (Philonthus marginatus and Oxytelus laqueatus) and Scarabaeidae (Melinopterus prodromus) for larger carrion and one geotrupid species Anoplotrupes stercorosus for advanced decomposition stages. Our study shows that necrophilous insect diversity patterns on carcasses over decomposition follow different mechanisms than those of vertebrate scavengers with permanently established carrion islands as important habitats for a diverse and threatened insect fauna.

Insect reproductive behaviors are important mediators of carrion nutrient release into soil

Current declines in terrestrial insect biomass and abundance have raised global concern for the fate of insects and the ecosystem services they provide. However, the ecological and economic contributions of many insects have yet to be quantified. Carrion-specializing invertebrates are important mediators of carrion decomposition; however, the role of their reproductive activities in facilitating this nutrient pulse into ecosystems is poorly understood. Here, we investigate whether insects that sequester carrion belowground for reproduction alter soil biotic and abiotic properties in North American temperate forests. We conducted a field experiment that measured soil conditions in control, surface carrion alone, and beetle-utilized carrion treatments. Our data demonstrate that Nicrophorus beetle reproduction and development results in changes in soil characteristics which are consistent with those observed in surface carrion decomposition alone. Carrion addition treatments increase soil labile C, DON and DOC, while soil pH and microbial C:N ratios decrease. This study demonstrates that the decomposition of carrion drives soil changes but suggests that the behaviors of insect scavengers play an important role in the release of carrion nutrients directly into the soil by sequestering carrion resources in the ecosystem where they were deposited.

Volatile organic compounds in variably aged carrion impacted by the presence of the primary colonizer, Cochliomyia macellaria (Diptera: Calliphoridae)

The attraction and colonization of vertebrate remains by carrion-associated arthropods are processes largely governed by olfaction. As remains decompose, they emit a bouquet of volatile organic compounds (VOCs), which in part originate from endogenous and exogenous microbes surrounding the carcass or from the carcass itself. The composition and concentration of VOCs are influenced by the presence and abundance of microbial species and arthropods. Blowfly species, such as Cochliomyia macellaria, play a critical role in nutrient recycling and the decomposition process of carrion. Gas chromatography-mass spectroscopy analysis was used to identify and classify volatile emissions from insect-colonized (with C. macellaria) and uncolonized rat carcasses, as well as a standard Gainesville diet, over a 10-day period. There were significant differences in composition and abundance of compounds present in each treatment, with significant effects of time, and different compound composition between treatments. Notable indicator compounds included, but were not limited to, indole, dimethyl disulfide, and dimethyl trisulfide. A high compound richness, and a low compound diversity, was detected over the 10-day period. The indicator compounds detected across all treatments were found to be of microbial origin, highlighting the importance of microbes in decomposition processes and arthropod attraction to carrion. This study also discusses the significant impact of necrophagous arthropods to the VOC profile of carrion. The results of this study provide insight into the changes in decomposition VOCs over time, with an explanation of compounds in high concentration known to be attractive to carrion-colonizing arthropods.

Soil chemistry dynamics of Sus scrofa carcasses with and without delayed Diptera colonization

Under normal circumstances, insects such as blow flies will oviposit and larvae will colonize a carcass as soon as possible. However, insect colonization on a carcass may be delayed due to the effects of wrapping, shallow burial, addition of lime derivatives to mitigate scavenging and odor, or extreme weather. The impacts of delayed insect colonization on carcass decomposition and its subsequent effect on soil chemistry profiles have not been examined to date. The objectives of this study were to determine soil chemistry dynamics associated with porcine carcasses experiencing delayed insect colonization for 7-day or 14-day. Soil chemistry profiles such as ammonium-N (NH₄ -N), orthophosphate-P (PO₄ -P), and dissolved organic carbon (DOC) were significantly different among treatments: insect inclusion (immediate access of blow fly colonization on porcine carcasses), 7-day insect exclusion and 14-day insect exclusion (blow fly access was delayed up to 7-day and 14-day). Furthermore, significant differences of soil chemical profiles were detected between days of decomposition and soil regions. Soil moisture, NH₄ -N, PO₄ -P, and DOC were significantly higher when insects were excluded from the porcine carcass suggesting loss of tissue from larval feeding reduced the mass of nutrients entering the soil. This study provides useful information for forensic science in cases where insect colonization is delayed for a period of time postmortem and soil chemistry in the cadaver decomposition island is considered for estimating postmortem interval.

Environmental conditions alter successional trajectories on an ephemeral resource: a field experiment with beetles in dead wood

Successional processes can be observed for many organisms and resources, but most studies of succession have focused on plants. A general framework has been proposed, advocating that successional patterns in species turnover are predominantly driven by competition, dispersal or abiotic limitation, and that the patterning of species accumulation over time gives clues to which process is most influential in a given system. We applied this framework to succession in communities of wood-living beetles, utilizing ephemeral resources in the form of 60 experimentally created dead aspen high stumps. High stumps were created at sun-exposed sites (high ambient temperature; favourable abiotic conditions) and shaded sites (low ambient temperature; abiotically limiting conditions). The sites were intermixed, ensuring similar dispersal opportunities. Beetle species richness and abundance were monitored with flight interception traps over four consecutive years. Consistent with predictions from the tested framework, several beetle functional groups accumulated species more slowly at the unfavourable shaded sites than at the favourable exposed sites. Species richness at the exposed sites increased rapidly to a plateau, consistent with a limiting effect of competition on community development. Similar results were obtained for beetle abundance and community structure. Part of the variance in beetle community structure was jointly explained by habitat and fungal community composition, suggesting that differences in the composition and developmental rate of fungal communities in the two habitats contributed to the observed patterns. Targeted experimental studies are now required to decisively establish what processes underlie the contrasting successional trajectories in the two environments.

A field study to evaluate PMI estimation methods for advanced decomposition stages

Estimating the postmortem interval (PMI) is one of the major tasks and a continuous challenge in forensic pathology. It is often an exclusion process of available methods, which ultimately can lead to an unsatisfactory outcome due to poor reliability. This problem is most acute in the late PMI, when decomposition proceeds and some methods (such as rigor, livor, and algor mortis) are no longer applicable. Several methods, such as forensic entomology, skeletal muscle protein degradation, and the study of body decomposition by application of a morphological scoring, are expected to provide further information; however, all have certain limitations and weaknesses. Availability of a tool-box of methods allows a case-specific selection of the most appropriate one(s), or eventually provides improvements in the overall accuracy and precision of the PMI estimation by merging and combining methods. To investigate practical (field) application, eventual interferences, and/or synergetic effects, as well as the robustness of these methods towards specific influencing factors, a field study was conducted, using eight pig cadavers of different body weights and physical coverage, left to decompose under natural conditions for 16 days. Morphological changes during decomposition were assessed using the total body score (TBS), muscle samples were collected to analyze protein degradation, and insect colonization was evaluated. The results reveal strengths and current limitations of all tested methods, as well as promising synergistic effects, and thus, provide a baseline for targeted future research.

Impact of confinement in vehicle trunks on decomposition and entomological colonization of carcasses

In order to investigate the impact of confinement in a car trunk on decomposition and insect colonization of carcasses, three freshly killed pig (Sus scrofa domesticus Erxleben) carcasses were placed individually in the trunks of older model cars and deployed in a forested area in the southwestern region of British Columbia, Canada, together with three freshly killed carcasses which were exposed in insect-accessible protective cages in the same forest. Decomposition rate and insect colonization of all carcasses were examined twice a week for four weeks. The exposed carcasses were colonized immediately by Calliphora latifrons Hough and Calliphora vomitoria (L.) followed by Lucilia illustris (Meigen), Phormia regina (Meigen) and Protophormia terraenovae (R.-D.) (Diptera: Calliphoridae). There was a delay of three to six days before the confined carcasses were colonized, first by P. regina, followed by Pr. terraenovae. These species represented the vast majority of blow fly species on the confined carcasses. Despite the delay in colonization, decomposition progressed much more rapidly in two of the confined carcasses in comparison with the exposed carcasses due to the greatly increased temperatures inside the vehicles, with the complete skeletonization of two of the confined carcasses ocurring between nine and 13 days after death. One confined carcass was an anomaly, attracting much fewer insects, supporting fewer larval calliphorids and decomposing much more slowly than other carcasses, despite similarly increased temperatures. It was later discovered that the vehicle in which this carcass was confined had a solid metal fire wall between the passenger area and the trunk, which served to reduce insect access and release of odors. These data may be extremely valuable when analyzing cadavers found inside vehicle trunks.

Rewilding with large herbivores: Positive direct and delayed effects of carrion on plant and arthropod communities

Carrion of large animals is an extremely nutrient rich, ephemeral resource that is essential for many species, but is scarce in the anthropogenic Western-European landscape due to legislative restrictions. Rewilding, a novel conservation strategy that aims at restoring natural processes with minimal human intervention, is increasing in popularity and could lead to increased carrion availability in the landscape. It is therefore important to understand the effects of carrion on biodiversity. We investigated the direct and delayed (five months) effects of red deer (Cervus elaphus) carcasses on plants and arthropods in the Oostvaardersplassen, the Netherlands, one of the oldest rewilding sites in Europe. Specifically, we tested whether carrion has a positive direct effect on the abundances and diversity of various arthropod functional groups, as well as a delayed effect on the vegetation and arthropods through the increased nutrient availability. During the active decomposition stage in spring, we, not surprisingly, observed higher abundances of carrion associated species (scavengers and their specialized predators) at the carrion sites than at control sites without carrion, but no higher abundances of predators or detritivores. In late summer, after near-complete decomposition, plant biomass was five times higher, and nutritional plant quality (C:N ratio) was higher at the carrion sites than at the control sites. Arthropod abundance and diversity were also manifold higher, owing to higher numbers of herbivorous and predatory species. Regression analysis showed that abundances of herbivores and detritivores were positively related to plant biomass, and predator abundances were positively related to abundances of herbivores and detritivores, suggesting bottom-up effects propagating through the food chain. Our results show that even in a naturally nutrient-rich ecosystem like the Oostvaardersplassen, carrion can have strong positive effects on local plant biomass and nutritional quality and arthropod abundances, lasting the whole growing season. We found evidence that these effects were first directly caused by the presence of carrion, and later by the enhanced nutrient availability in the soil. This highlights the importance of the indirect pathways by which carrion can structure arthropod communities.

Effects of Carrion Relocation on the Succession of Newly Arriving Adult Necrophilous Insects

Ecological succession of necrophilous insects follows a predictable sequence, related to their differential attraction to changing odor profiles associated with carrion and colonizing insects. However, the dependency of insect arrival on the duration of the carrion's residency at a location has not been investigated. To assess the fidelity of necrophilous insects to carrion of specific decomposition ages, independent of its location, we monitored the decomposition of neonate pigs in one field and then simultaneously relocated carcasses of different decomposition ages to an ecologically similar but remote field. We examined the effects of decomposition age and relocation on the assembly of the necrophilous insect community, using a novel vented-chamber trap, which excluded all sensory cues except odors. Community composition differed over a 4-d decomposition period, showing that insects were differentially attracted to pigs of different decomposition ages. There was overall concordance between respective decomposition ages in the two fields, with similar relative abundances of taxa before and after transfer. Although different decomposition ages continued to attract different insects, differentiation of the necrophilous insect communities relative to the age of decomposition was less pronounced after transfer. The results of this study demonstrate that translocating a decomposing body to a new, but geographically and ecologically similar location continues the predicted insect succession, albeit with greater variance, based on olfactory cues alone. Several rare taxa were sampled only prior to relocation, including the first documentation of the invasive hairy maggot blow fly, Chrysomya rufifacies (Macquart) (Diptera: Calliphoridae), in central North Carolina.

A Novel Passive Sampling Technique for Collecting Adult Necrophilous Insects Arriving at Neonate Pig Carcasses

Neonate pigs have been used as decomposition models in experimental forensic entomology studies. Their small size, however, poses challenges to traditional sampling methods of necrophilous insects, like the sweep net, the most commonly used sampling method in forensic entomology research and practice. Previous research experimentally demonstrated the potential for sticky traps as an effective sampling method for collecting necrophilous insects from neonate pigs. While sticky traps effectively sampled fly diversity from the pigs, they shared with the sweep net low sample diversity and abundance, particularly of necrophilous beetles. Motivated by chemosensory host-finding of necrophilous insects and the architecture of carrion-mimicking thermogenic flowers, we developed a 'vented-chamber' method and optimized its design experimentally. In this approach, a neonate pig was transiently enclosed in a chamber. The decomposition process thermally convected the natural decomposition odors in the headspace above the pig toward a pair of sticky traps. The vented-chamber method collected significantly more necrophilous flies, representing a greater diversity, than the sweep net. Nevertheless, this approach caught few beetles, and hand collections must be used as well to most effectively sample beetle diversity.

Microbiome-assisted carrion preservation aids larval development in a burying beetle

The ability to feed on a wide range of diets has enabled insects to diversify and colonize specialized niches. Carrion, for example, is highly susceptible to microbial decomposers, but is kept palatable several days after an animal's death by carrion-feeding insects. Here we show that the burying beetle Nicrophorus vespilloides preserves carrion by preventing the microbial succession associated with carrion decomposition, thus ensuring a high-quality resource for their developing larvae. Beetle-tended carcasses showed no signs of degradation and hosted a microbial community containing the beetles' gut microbiota, including the yeast Yarrowia In contrast, untended carcasses showed visual and olfactory signs of putrefaction, and their microbial community consisted of endogenous and soil-originating microbial decomposers. This regulation of the carcass' bacterial and fungal community and transcriptomic profile was associated with lower concentrations of putrescine and cadaverine (toxic polyamines associated with carcass putrefaction) and altered levels of proteases, lipases, and free amino acids. Beetle-tended carcasses develop a biofilm-like matrix housing the yeast, which, when experimentally removed, leads to reduced larval growth. Thus, tended carcasses hosted a mutualistic microbial community that promotes optimal larval development, likely through symbiont-mediated extraintestinal digestion and detoxification of carrion nutrients. The adaptive preservation of carrion coordinated by the beetles and their symbionts demonstrates a specialized resource-management strategy through which insects modify their habitats to enhance fitness.

Recent advances in forensic anthropology: decomposition research

Decomposition research is still in its infancy, but significant advances have occurred within forensic anthropology and other disciplines in the past several decades. Decomposition research in forensic anthropology has primarily focused on estimating the postmortem interval (PMI), detecting clandestine remains, and interpreting the context of the scene. Additionally, while much of the work has focused on forensic-related questions, an interdisciplinary focus on the ecology of decomposition has also advanced our knowledge. The purpose of this article is to highlight some of the fundamental shifts that have occurred to advance decomposition research, such as the role of primary extrinsic factors, the application of decomposition research to the detection of clandestine remains and the estimation of the PMI in forensic anthropology casework. Future research in decomposition should focus on the collection of standardized data, the incorporation of ecological and evolutionary theory, more rigorous statistical analyses, examination of extended PMIs, greater emphasis on aquatic decomposition and interdisciplinary or transdisciplinary research, and the use of human cadavers to get forensically reliable data.

Temporal and Spatial Impact of Human Cadaver Decomposition on Soil Bacterial and Arthropod Community Structure and Function

As vertebrate carrion decomposes, there is a release of nutrient-rich fluids into the underlying soil, which can impact associated biological community structure and function. How these changes alter soil biogeochemical cycles is relatively unknown and may prove useful in the identification of carrion decomposition islands that have long lasting, focal ecological effects. This study investigated the spatial (0, 1, and 5 m) and temporal (3-732 days) dynamics of human cadaver decomposition on soil bacterial and arthropod community structure and microbial function. We observed strong evidence of a predictable response to cadaver decomposition that varies over space for soil bacterial and arthropod community structure, carbon (C) mineralization and microbial substrate utilization patterns. In the presence of a cadaver (i.e., 0 m samples), the relative abundance of Bacteroidetes and Firmicutes was greater, while the relative abundance of Acidobacteria, Chloroflexi, Gemmatimonadetes, and Verrucomicrobia was lower when compared to samples at 1 and 5 m. Micro-arthropods were more abundant (15 to 17-fold) in soils collected at 0 m compared to either 1 or 5 m, but overall, micro-arthropod community composition was unrelated to either bacterial community composition or function. Bacterial community structure and microbial function also exhibited temporal relationships, whereas arthropod community structure did not. Cumulative precipitation was more effective in predicting temporal variations in bacterial abundance and microbial activity than accumulated degree days. In the presence of the cadaver (i.e., 0 m samples), the relative abundance of Actinobacteria increased significantly with cumulative precipitation. Furthermore, soil bacterial communities and C mineralization were sensitive to the introduction of human cadavers as they diverged from baseline levels and did not recover completely in approximately 2 years. These data are valuable for understanding ecosystem function surrounding carrion decomposition islands and can be applicable to environmental bio-monitoring and forensic sciences.

Mass mortality events and the role of necrophagous invertebrates

Scale is important in understanding and applying concepts in ecology. Historically, the mechanisms regulating necrophagous arthropod community structure have been well explored on a single vertebrate carcass. However, practically nothing is known of whether such findings can be extrapolated to cases where large numbers of carcasses have been introduced into an ecosystem at a single time point. With the increasing incidences of mass mortality events (MMEs), understanding how scale effects community assembly of necrophagous insects and the resulting bottom-up or top-down effects on the impacted ecosystem are of utmost importance. Unfortunately, MMEs are unpredictable, making their study nearly impossible within a robust experimental framework. The objectives of this paper are to provide a brief overview of what is known with regards to ecological responses to carrion, opine on the ramifications of MMEs on local communities, and provide a brief overview of knowledge gaps, avenues for future research, and a potential study systems for rigorous MME experiments.

Post-Colonization Interval Estimates Using Multi-Species Calliphoridae Larval Masses and Spatially Distinct Temperature Data Sets: A Case Study

Common forensic entomology practice has been to collect the largest Diptera larvae from a scene and use published developmental data, with temperature data from the nearest weather station, to estimate larval development time and post-colonization intervals (PCIs). To evaluate the accuracy of PCI estimates among Calliphoridae species and spatially distinct temperature sources, larval communities and ambient air temperature were collected at replicate swine carcasses (N = 6) throughout decomposition. Expected accumulated degree hours (ADH) associated with Cochliomyia macellaria and Phormia regina third instars (presence and length) were calculated using published developmental data sets. Actual ADH ranges were calculated using temperatures recorded from multiple sources at varying distances (0.90 m–7.61 km) from the study carcasses: individual temperature loggers at each carcass, a local weather station, and a regional weather station. Third instars greatly varied in length and abundance. The expected ADH range for each species successfully encompassed the average actual ADH for each temperature source, but overall under-represented the range. For both calliphorid species, weather station data were associated with more accurate PCI estimates than temperature loggers associated with each carcass. These results provide an important step towards improving entomological evidence collection and analysis techniques, and developing forensic error rates.

Effects of environmental temperature on oviposition behavior in three blow fly species of forensic importance

A number of factors are known to affect blow fly behavior with respect to oviposition. Current research indicates that temperature is the most significant factor. However temperature thresholds for oviposition in forensically important blow flies have not been well studied. Here, the oviposition behavior of three species of forensically important blow fly species (Calliphora vicina, Calliphora vomitoria and Lucilia sericata,) was studied under controlled laboratory conditions over a range of temperatures (10-40°C). Lower temperature thresholds for oviposition of 16°C and 17.5°C were established for C. vomitoria and L. sericata respectively, whilst C. vicina continued to lay eggs at 10°C. C. vomitoria and L. sericata both continued to lay eggs at 40°C, whilst the highest temperature at which oviposition occurred in C. vicina was 35°C. Within these thresholds there was considerable variation in the number of surviving pupae, with a general pattern of a single peak within the range of temperatures at which eggs were laid, but with the pattern being much less distinct for L. sericata.

Attraction and Oviposition of Lucilia eximia (Diptera: Calliphoridae) to Resources Colonized by the Invasive Competitor Chrysomya albiceps (Diptera: Calliphoridae)

The present study aimed to determine if the presence of immatures of the invasive blow fly species Chrysomya albiceps (Wiedemann) influences the adult behavior of the native species Lucilia eximia (Wiedemann) in Brazil. The level of attraction and oviposition by the native species was assessed in a dual-choice assay. The evaluation was based on sex and stage of ovarian development of L. eximia adults to a resource not colonized (NCR) or colonized (RPC) with eggs, different instars, or densities of C. albiceps. A significant difference in attraction was observed based on sex and stages of ovarian development. Males and nongravid females were more attracted to RPC, whereas gravid females preferred NCR. Moreover, males exhibited the lowest response in all assays among the three sex categories examined. In general, adults preferably oviposited on NCR rather than RPC. Also, between the eggs and second instar treatments, L. eximia laid more eggs on RPC with eggs than second instars (predatory stage). Lucilia eximia attraction to second-instar C. albiceps at different densities was marginally significant. Overall, results indicate the invasive species, C. albiceps, is impacting the behavior of the native blow fly, L. eximia, with regards to its attraction and colonization of vertebrate carrion, which could explain why native blow fly populations have significantly decreased since the introduction of C. albiceps.

Facilitation may not be an adequate mechanism of community succession on carrion

The facilitation model of ecological succession was advanced by plant ecologists in the late 1970s and was then introduced to carrion ecology in the late 1980s, without empirical evidence of its applicability. Ecologists in both disciplines proposed removing early colonists, in this case fly eggs and larvae, from the substrate to determine whether other species could still colonize, which to our knowledge has never been attempted. Here, we tested the facilitation model in a carrion system by removing fly eggs and larvae from carcasses that were exposed in agricultural fields and assigned to one of the following treatment levels of removal intensity: 0, <5, 50, and 100%. Subsequent patterns of colonisation did not provide support for the applicability of the facilitation model in carrion systems. Although results showed, in part, that the removal of fly eggs and larvae decreased the decomposition rate of carcasses, the removal did not prevent colonization by secondary colonizers. Finally, we discuss future studies and make recommendations as to how the facilitation model could be improved, firstly by being more specific about the scale where facilitation is believed to be occurring, secondly by clearly stating what environmental modification is believed to be involved, and thirdly by disentangling facilitation from priority effects.

Microbial Signatures of Cadaver Gravesoil During Decomposition

Genomic studies have estimated there are approximately 10(3)-10(6) bacterial species per gram of soil. The microbial species found in soil associated with decomposing human remains (gravesoil) have been investigated and recognized as potential molecular determinants for estimates of time since death. The nascent era of high-throughput amplicon sequencing of the conserved 16S ribosomal RNA (rRNA) gene region of gravesoil microbes is allowing research to expand beyond more subjective empirical methods used in forensic microbiology. The goal of the present study was to evaluate microbial communities and identify taxonomic signatures associated with the gravesoil human cadavers. Using 16S rRNA gene amplicon-based sequencing, soil microbial communities were surveyed from 18 cadavers placed on the surface or buried that were allowed to decompose over a range of decomposition time periods (3-303 days). Surface soil microbial communities showed a decreasing trend in taxon richness, diversity, and evenness over decomposition, while buried cadaver-soil microbial communities demonstrated increasing taxon richness, consistent diversity, and decreasing evenness. The results show that ubiquitous Proteobacteria was confirmed as the most abundant phylum in all gravesoil samples. Surface cadaver-soil communities demonstrated a decrease in Acidobacteria and an increase in Firmicutes relative abundance over decomposition, while buried soil communities were consistent in their community composition throughout decomposition. Better understanding of microbial community structure and its shifts over time may be important for advancing general knowledge of decomposition soil ecology and its potential use during forensic investigations.

Microbial ecology of the salmon necrobiome: evidence salmon carrion decomposition influences aquatic and terrestrial insect microbiomes

Carrion decomposition is driven by complex relationships that affect necrobiome community (i.e. all organisms and their genes associated with a dead animal) interactions, such as insect species arrival time to carrion and microbial succession. Little is understood about how microbial communities interact with invertebrates at the aquatic-terrestrial habitat interface. The first objective of the study was to characterize internal microbial communities using high-throughput sequencing of 16S rRNA gene amplicons for aquatic insects (three mayfly species) in streams with salmon carcasses compared with those in streams without salmon carcasses. The second objective was to assess the epinecrotic microbial communities of decomposing salmon carcasses (Oncorhynchus keta) compared with those of terrestrial necrophagous insects (Calliphora terraenovae larvae and adults) associated with the carcasses. There was a significant difference in the internal microbiomes of mayflies collected in salmon carcass-bearing streams and in non-carcass streams, while the developmental stage of blow flies was the governing factor in structuring necrophagous insect internal microbiota. Furthermore, the necrophagous internal microbiome was influenced by the resource on which the larvae developed, and changes in the adult microbiome varied temporally. Overall, these carrion subsidy-driven networks respond to resource pulses with bottom-up effects on consumer microbial structure, as revealed by shifting communities over space and time.

Microbial Biofilm Community Variation in Flowing Habitats: Potential Utility as Bioindicators of Postmortem Submersion Intervals

Biofilms are a ubiquitous formation of microbial communities found on surfaces in aqueous environments. These structures have been investigated as biomonitoring indicators for stream heath, and here were used for the potential use in forensic sciences. Biofilm successional development has been proposed as a method to determine the postmortem submersion interval (PMSI) of remains because there are no standard methods for estimating the PMSI and biofilms are ubiquitous in aquatic habitats. We sought to compare the development of epinecrotic (biofilms on Sus scrofa domesticus carcasses) and epilithic (biofilms on unglazed ceramic tiles) communities in two small streams using bacterial automated ribosomal intergenic spacer analysis. Epinecrotic communities were significantly different from epilithic communities even though environmental factors associated with each stream location also had a significant influence on biofilm structure. All communities at both locations exhibited significant succession suggesting that changing communities throughout time is a general characteristic of stream biofilm communities. The implications resulting from this work are that epinecrotic communities have distinctive shifts at the first and second weeks, and therefore the potential to be used in forensic applications by associating successional changes with submersion time to estimate a PMSI. The influence of environmental factors, however, indicates the lack of a successional pattern with the same organisms and a focus on functional diversity may be more applicable in a forensic context.