1
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Giraldo C, Cresson P, MacKenzie K, Fontaine V, Loots C, Delegrange A, Lefebvre S. Insights into planktonic food-web dynamics through the lens of size and season. Sci Rep 2024; 14:1684. [PMID: 38243111 PMCID: PMC10798955 DOI: 10.1038/s41598-024-52256-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 01/16/2024] [Indexed: 01/21/2024] Open
Abstract
Knowledge of the trophic structure and variability of planktonic communities is a key factor in understanding food-web dynamics and energy transfer from zooplankton to higher trophic levels. In this study, we investigated how stable isotopes of mesozooplankton species varied seasonally (winter, spring, autumn) in relation to environmental factors and plankton size classes in a temperate coastal ecosystem. Our results showed that spring is characterized by the strongest vertical and size-structured plankton food-web, mainly fueled by the phytoplankton bloom. As a result, spring displayed the largest isotopic niche space and trophic divergence among species. On the contrary, both pelagic and benthic-derived carbon influenced low productive seasons (winter and autumn), resulting in more generalist strategies (trophic redundancy). Stable isotope mixing models were used to explore how different seasonal structures influenced the overall food web up to predatory plankton (i.e., mysids, chaetognaths, and fish larvae). Different feeding strategies were found in spring, with predators having either a clear preference for larger prey items (> 1 mm, for herring and dab larvae) or a more generalist diet (sprat and dragonets larvae). During low productive seasons, predators seemed to be more opportunistic, feeding on a wide range of size classes but focusing on smaller prey. Overall, the food-web architecture of plankton displayed different seasonal patterns linked to components at the base of the food web that shaped the main energy fluxes, either from phytoplankton or recycled material. Additionally, these patterns extended to carnivorous plankton, such as fish larvae, emphasizing the importance of bottom-up processes.
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Affiliation(s)
- Carolina Giraldo
- IFREMER, HMMN - Unité halieutique Manche-Mer du Nord, 62200, Boulogne sur mer, France.
| | - Pierre Cresson
- IFREMER, HMMN - Unité halieutique Manche-Mer du Nord, 62200, Boulogne sur mer, France
| | - Kirsteen MacKenzie
- IFREMER, HMMN - Unité halieutique Manche-Mer du Nord, 62200, Boulogne sur mer, France
| | - Virginie Fontaine
- IFREMER, HMMN - Unité halieutique Manche-Mer du Nord, 62200, Boulogne sur mer, France
- Univ. Lille, CNRS, Univ. Littoral Côte d'Opale, IRD, UMR 8187 - LOG - Laboratoire d'Océanologie et de Géosciences, 59000, Lille, France
| | - Christophe Loots
- IFREMER, HMMN - Unité halieutique Manche-Mer du Nord, 62200, Boulogne sur mer, France
| | - Alice Delegrange
- Univ. Lille, CNRS, Univ. Littoral Côte d'Opale, IRD, UMR 8187 - LOG - Laboratoire d'Océanologie et de Géosciences, 59000, Lille, France
| | - Sébastien Lefebvre
- Univ. Lille, CNRS, Univ. Littoral Côte d'Opale, IRD, UMR 8187 - LOG - Laboratoire d'Océanologie et de Géosciences, 59000, Lille, France
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2
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García Y, Giménez-Benavides L, Iriondo JM, Lara-Romero C, Méndez M, Morente-López J, Santamaría S. Addition of nocturnal pollinators modifies the structure of pollination networks. Sci Rep 2024; 14:1226. [PMID: 38216624 PMCID: PMC10786900 DOI: 10.1038/s41598-023-49944-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 12/13/2023] [Indexed: 01/14/2024] Open
Abstract
Although the ecological network approach has substantially contributed to the study of plant-pollinator interactions, current understanding of their functional structure is biased towards diurnal pollinators. Nocturnal pollinators have been systematically ignored despite the publication of several studies that have tried to alleviate this diurnal bias. Here, we explored whether adding this neglected group of pollinators had a relevant effect on the overall architecture of three high mountain plant-pollinator networks. Including nocturnal moth pollinators modified network properties by decreasing total connectivity, connectance, nestedness and robustness to plant extinction; and increasing web asymmetry and modularity. Nocturnal moths were not preferentially connected to the most linked plants of the networks, and they were grouped into a specific "night" module in only one of the three networks. Our results indicate that ignoring the nocturnal component of plant-pollinator networks may cause changes in network properties different from those expected from random undersampling of diurnal pollinators. Consequently, the neglect of nocturnal interactions may provide a distorted view of the structure of plant-pollinator networks with relevant implications for conservation assessments.
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Affiliation(s)
- Yedra García
- Area of Biodiversity and Conservation, ESCET, Universidad Rey Juan Carlos, C/Tulipán s/n, Móstoles, E-28933, Madrid, Spain
- Department of Biology, Lund University, SE-223 62, Lund, Sweden
| | - Luis Giménez-Benavides
- Area of Biodiversity and Conservation, ESCET, Universidad Rey Juan Carlos, C/Tulipán s/n, Móstoles, E-28933, Madrid, Spain
| | - José M Iriondo
- Area of Biodiversity and Conservation, ESCET, Universidad Rey Juan Carlos, C/Tulipán s/n, Móstoles, E-28933, Madrid, Spain
| | - Carlos Lara-Romero
- Area of Biodiversity and Conservation, ESCET, Universidad Rey Juan Carlos, C/Tulipán s/n, Móstoles, E-28933, Madrid, Spain.
| | - Marcos Méndez
- Area of Biodiversity and Conservation, ESCET, Universidad Rey Juan Carlos, C/Tulipán s/n, Móstoles, E-28933, Madrid, Spain
| | - Javier Morente-López
- Area of Biodiversity and Conservation, ESCET, Universidad Rey Juan Carlos, C/Tulipán s/n, Móstoles, E-28933, Madrid, Spain
- Island Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Francisco Sánchez 3, E-38206, San Cristóbal de La Laguna, Santa Cruz de Tenerife, Spain
| | - Silvia Santamaría
- Area of Biodiversity and Conservation, ESCET, Universidad Rey Juan Carlos, C/Tulipán s/n, Móstoles, E-28933, Madrid, Spain
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3
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Graham NR, Krehenwinkel H, Lim JY, Staniczenko P, Callaghan J, Andersen JC, Gruner DS, Gillespie RG. Ecological network structure in response to community assembly processes over evolutionary time. Mol Ecol 2023; 32:6489-6506. [PMID: 36738159 DOI: 10.1111/mec.16873] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Revised: 01/07/2023] [Accepted: 01/25/2023] [Indexed: 02/05/2023]
Abstract
The dynamic structure of ecological communities results from interactions among taxa that change with shifts in species composition in space and time. However, our ability to study the interplay of ecological and evolutionary processes on community assembly remains relatively unexplored due to the difficulty of measuring community structure over long temporal scales. Here, we made use of a geological chronosequence across the Hawaiian Islands, representing 50 years to 4.15 million years of ecosystem development, to sample 11 communities of arthropods and their associated plant taxa using semiquantitative DNA metabarcoding. We then examined how ecological communities changed with community age by calculating quantitative network statistics for bipartite networks of arthropod-plant associations. The average number of interactions per species (linkage density), ratio of plant to arthropod species (vulnerability) and uniformity of energy flow (interaction evenness) increased significantly in concert with community age. The index of specializationH 2 ' has a curvilinear relationship with community age. Our analyses suggest that younger communities are characterized by fewer but stronger interactions, while biotic associations become more even and diverse as communities mature. These shifts in structure became especially prominent on East Maui (~0.5 million years old) and older volcanos, after enough time had elapsed for adaptation and specialization to act on populations in situ. Such natural progression of specialization during community assembly is probably impeded by the rapid infiltration of non-native species, with special risk to younger or more recently disturbed communities that are composed of fewer specialized relationships.
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Affiliation(s)
- Natalie R Graham
- Department of Environmental Sciences Policy and Management, University of California Berkeley, Berkeley, California, USA
| | - Henrik Krehenwinkel
- Department of Biogeography, Faculty of Regional and Environmental Sciences, Trier University, Trier, Germany
| | - Jun Ying Lim
- Department of Biological Sciences, National University of Singapore, Singapore
| | - Phillip Staniczenko
- Department of Biology, Brooklyn College, City University of New York, New York, New York, USA
| | - Jackson Callaghan
- Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, San Diego, California, USA
| | - Jeremy C Andersen
- Department of Environmental Conservation, University of Massachusetts Amherst, Amherst, Massachusetts, USA
| | - Daniel S Gruner
- Department of Entomology, University of Maryland, College Park, Maryland, USA
| | - Rosemary G Gillespie
- Department of Environmental Sciences Policy and Management, University of California Berkeley, Berkeley, California, USA
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4
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Rizali A, Karindah S, Ainy N, Meiadi MLT, Tawakkal MI, Rahardjo BT, Buchori D. Long-term changes as oil palm plantation age simplify the structure of host-parasitoid food webs. PLoS One 2023; 18:e0292607. [PMID: 37816027 PMCID: PMC10564177 DOI: 10.1371/journal.pone.0292607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2022] [Accepted: 09/25/2023] [Indexed: 10/12/2023] Open
Abstract
Understanding host-parasitoid food webs, as well as the factors affecting species interactions, is important for developing pest management strategies in an agroecosystem. This research aimed to study how the long-term change in oil palm plantations, specifically the tree age, affect the structure of host-parasitoid food webs. The field research was conducted on an oil palm plantation located in Central Kalimantan and Jambi Province, Indonesia. In Central Kalimantan, we conducted observations of lepidopteran larvae and parasitoid wasps at different tree ages, ranging from 3 to 18 years old. For tree ages from 3 to 10 years, observations of host-parasitoid food webs were conducted by collecting the lepidopteran larvae using a hand-collection method in each oil palm tree within a hundred trees and they were later reared in the laboratory for observing the emerging parasitoids. The fogging method was applied for trees aged 12 to 18 years because the tree height was too high, and hand-collection was difficult to perform. To compare host-parasitoid food webs between different regions, we also conducted a hand-collection method in Jambi, but only for trees aged 3 years old. The food-web structure that was analyzed included the species number of lepidopteran larvae and parasitoid wasps, linkage density, and interaction diversity. We found 32 species of lepidopteran pests and 16 species of associated parasitoids in Central Kalimantan and 12 species of lepidopteran pests, and 11 species of parasitoids in Jambi. Based on the GLM analysis, tree age had a negative relationship with the species number of lepidopteran larvae and parasitoids as well as linkage density and interaction diversity. Different geographical regions showed different host-parasitoid food web structures, especially the species number of lepidopteran larvae and interaction diversity, which were higher in Central Kalimantan than in Jambi. However, some parasitoids can be found across different tree ages. For example, Fornicia sp (Hymenoptera: Braconidae) was recorded in all ages of oil palm sampled. Results of the GLM analysis showed that the abundance of Fornicia sp and its host (lepidopteran larvae abundance) were not affected by the tree age of the oil palm. In conclusion, the long-term change in oil palm plantations simplifies the structure of host-parasitoid food webs. This highlights the importance of long-term studies across geographical regions for a better understanding of the consequences that wide monoculture oil palm plantations have on biological control services.
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Affiliation(s)
- Akhmad Rizali
- Faculty of Agriculture, Department of Plant Pests and Diseases, University of Brawijaya, Malang, East Java, Indonesia
| | - Sri Karindah
- Faculty of Agriculture, Department of Plant Pests and Diseases, University of Brawijaya, Malang, East Java, Indonesia
| | - Nur Ainy
- Faculty of Agriculture, Department of Plant Pests and Diseases, University of Brawijaya, Malang, East Java, Indonesia
| | - Muhamad Luthfie Tri Meiadi
- Faculty of Agriculture, Department of Plant Pests and Diseases, University of Brawijaya, Malang, East Java, Indonesia
| | - Muhammad Iqbal Tawakkal
- Faculty of Agriculture, Department of Plant Protection, IPB University, Bogor, West Java, Indonesia
| | - Bambang Tri Rahardjo
- Faculty of Agriculture, Department of Plant Pests and Diseases, University of Brawijaya, Malang, East Java, Indonesia
| | - Damayanti Buchori
- Faculty of Agriculture, Department of Plant Protection, IPB University, Bogor, West Java, Indonesia
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5
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Hasik AZ, de Angeli Dutra D, Doherty JF, Duffy MA, Poulin R, Siepielski AM. Resetting our expectations for parasites and their effects on species interactions: a meta-analysis. Ecol Lett 2023; 26:184-199. [PMID: 36335559 PMCID: PMC10099232 DOI: 10.1111/ele.14139] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Revised: 10/17/2022] [Accepted: 10/18/2022] [Indexed: 11/08/2022]
Abstract
Despite the ubiquitous nature of parasitism, how parasitism alters the outcome of host-species interactions such as competition, mutualism and predation remains unknown. Using a phylogenetically informed meta-analysis of 154 studies, we examined how the mean and variance in the outcomes of species interactions differed between parasitized and non-parasitized hosts. Overall, parasitism did not significantly affect the mean or variance of host-species interaction outcomes, nor did the shared evolutionary histories of hosts and parasites have an effect. Instead, there was considerable variation in outcomes, ranging from strongly detrimental to strongly beneficial for infected hosts. Trophically-transmitted parasites increased the negative effects of predation, parasites increased and decreased the negative effects of interspecific competition for parasitized and non-parasitized heterospecifics, respectively, and parasites had particularly strong negative effects on host species interactions in freshwater and marine habitats, yet were beneficial in terrestrial environments. Our results illuminate the diverse ways in which parasites modify critical linkages in ecological networks, implying that whether the cumulative effects of parasitism are considered detrimental depends not only on the interactions between hosts and their parasites but also on the many other interactions that hosts experience.
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Affiliation(s)
- Adam Z Hasik
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas, USA.,Jacob Blaustein Center for Scientific Cooperation, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel
| | | | - Jean-François Doherty
- Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada
| | - Meghan A Duffy
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan, USA
| | - Robert Poulin
- Department of Zoology, University of Otago, Dunedin, New Zealand
| | - Adam M Siepielski
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas, USA
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6
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Hasik AZ, Siepielski AM. Parasitism shapes selection by drastically reducing host fitness and increasing host fitness variation. Biol Lett 2022; 18:20220323. [PMID: 36321430 PMCID: PMC9627441 DOI: 10.1098/rsbl.2022.0323] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 10/18/2022] [Indexed: 05/20/2023] Open
Abstract
Determining the effects of parasites on host reproduction is key to understanding how parasites affect the underpinnings of selection on hosts. Although infection is expected to be costly, reducing mean fitness, infection could also increase variation in fitness costs among hosts, both of which determine the potential for selection on hosts. To test these ideas, we used a phylogenetically informed meta-analysis of 118 studies to examine how changes in the mean and variance in the outcome of reproduction differed between parasitized and non-parasitized hosts. We found that parasites had severe negative effects on mean fitness, with parasitized hosts suffering reductions in fecundity, viability and mating success. Parasite infection also increased variance in reproduction, particularly fecundity and offspring viability. Surprisingly, parasites had similar effects on viability when either the male or female was parasitized. These results not only provide the first synthetic, comparative, and quantitative summary of the strong deleterious effects of parasites on host reproductive fitness, but also reveal a consistent role for parasites in shaping the opportunity for selection.
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Affiliation(s)
- Adam Z. Hasik
- Biological Sciences, University of Arkansas, SCEN 601, 850 W. Dickson St., Fayetteville, AR 72701, USA
| | - Adam M. Siepielski
- Biological Sciences, University of Arkansas, SCEN 601, 850 W. Dickson St., Fayetteville, AR 72701, USA
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7
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Food webs for three burn severities after wildfire in the Eldorado National Forest, California. Sci Data 2022; 9:384. [PMID: 35798761 PMCID: PMC9262949 DOI: 10.1038/s41597-022-01220-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Accepted: 02/03/2022] [Indexed: 11/08/2022] Open
Abstract
Wildfire dynamics are changing around the world and understanding their effects on ecological communities and landscapes is urgent and important. We report detailed food webs for unburned, low-to-moderate and high severity burned habitats three years post-fire in the Eldorado National Forest, California. The cumulative cross-habitat food web contains 3,084 ontogenetic stages (nodes) or plant parts comprising 849 species (including 107 primary producers, 634 invertebrates, 94 vertebrates). There were 178,655 trophic interactions between these nodes. We provide information on taxonomy, body size, biomass density and trophic interactions under each of the three burn conditions. We detail 19 sampling methods deployed across 27 sites (nine in each burn condition) used to estimate the richness, body size, abundance and biomass density estimates in the node lists. We provide the R code and raw data to estimate summarized node densities and assign trophic links.
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8
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Olesen JM. Ego network analysis of the trophic structure of an island land bird through 300 years of climate change and invaders. Ecol Evol 2022; 12:e8916. [PMID: 35600677 PMCID: PMC9121045 DOI: 10.1002/ece3.8916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2021] [Revised: 01/01/2022] [Accepted: 03/09/2022] [Indexed: 11/06/2022] Open
Abstract
Ego net analysis is a well‐known practice in social sciences, where an ego net (EN) consists of a focal node, the ego, and its links to other nodes, called alters, and alter–alter links may also be included. An EN describes how a focal node is embedded in its interaction context. Here, I introduce EN analysis to ecology in a study of the trophic network of a sub‐Antarctic land bird, Lesser Sheathbill (Chionis minor). Data originate from the sheathbill population on Marion Island in the Southern Ocean. The bird is ego and its enemies and food are alters. The EN is organized along three dimensions: habitat, interaction type, and time (from before human arrival in 1803 and until a future year 2100). Ten EN descriptors are defined, estimated, and used to track the 300 years of change in sheathbill EN structure. Since 1803, the EN has passed two major, but reversible shifts—seal exploitation in the 19th century and presence of cats from 1949 to 1991. These shifts can be read as structural changes in the sheathbill EN. In the future, a third, perhaps irreversible change is predicted, driven by climate change and a surprising, recent shift to seabird predation by House Mouse, the most detrimental of all extant invaders on Marion. In a warmer and drier future, the mouse will proliferate, and if this forces seabirds to abandon the island, their accumulation of detritus runs dry, starving a rich invertebrate detritivore fauna, which also is a key food source to sheathbills. These detritivores together with plants have also constituted the main food sources of mice. The EN descriptors quantify that story. In the future, these events may lead to a collapse of the island ecosystem, including extinction of the sheathbill—unless plans for mouse eradication are implemented.
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Affiliation(s)
- Jens M. Olesen
- Department of Biology Aarhus University Aarhus C Denmark
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9
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Boukhdoud L, Saliba C, Parker LD, McInerney NR, Kahale R, Saliba I, Maldonado JE, Kharrat MBD. Using DNA metabarcoding to decipher the diet plant component of mammals from the Eastern Mediterranean region. METABARCODING AND METAGENOMICS 2021. [DOI: 10.3897/mbmg.5.70107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Longevity of species populations depends largely on interactions among animals and plants in an ecosystem. Predation and seed dispersal are among the most important interactions necessary for species conservation and persistence, and diet analysis is a prerequisite tool to evaluate these interactions. Understanding these processes is crucial for identifying conservation targets and for executing efficient reforestation and ecological restoration. In this study, we applied a scat DNA metabarcoding technique using the P6-loop of the trnL (UAA) chloroplastic marker to describe the seasonal plant diet composition of 15 mammal species from a highly biodiverse Lebanese forest in the Eastern Mediterranean. We also recovered plant seeds, when present, from the scats for identification. The mammal species belong to 10 families from 5 different orders. More than 133 plant species from 54 plant families were detected and identified. Species from the Rosaceae, Poaceae, Apiaceae, Fabaceae, Fagaceae and Berberidaceae families were consumed by the majority of the mammals and should be taken into consideration in future reforestation and conservation projects. Our results showed that the DNA metabarcoding approach provides a promising method for tracking the dietary plant components of a wide diversity of mammals, yielding key insights into plant-animal interactions inside Lebanon’s forests.
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10
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Carpentier C, Barabás G, Spaak JW, De Laender F. Reinterpreting the relationship between number of species and number of links connects community structure and stability. Nat Ecol Evol 2021; 5:1102-1109. [PMID: 34059819 DOI: 10.1038/s41559-021-01468-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Accepted: 04/16/2021] [Indexed: 02/04/2023]
Abstract
For 50 years, ecologists have examined how the number of interactions (links) scales with the number of species in ecological networks. Here, we show that the way the number of links varies when species are sequentially removed from a community is fully defined by a single parameter identifiable from empirical data. We mathematically demonstrate that this parameter is network-specific and connects local stability and robustness, establishing a formal connection between community structure and two prime stability concepts. Importantly, this connection highlights a local stability-robustness trade-off, which is stronger in mutualistic than in trophic networks. Analysis of 435 empirical networks confirmed these results. We finally show how our network-specific approach relates to the classical across-network approach found in literature. Taken together, our results elucidate one of the intricate relationships between network structure and stability in community networks.
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Affiliation(s)
- Camille Carpentier
- Research Unit in Environmental and Evolutionary Biology, Institute of Life, Earth and the Environment, Namur Institute of Complex Systems, University of Namur, Namur, Belgium.
| | - György Barabás
- Department of Physics, Chemistry and Biology, Division of Theoretical Biology, Linköping University, Linköping, Sweden.,MTA-ELTE Theoretical Biology and Evolutionary Ecology Research Group, Budapest, Hungary
| | - Jürg Werner Spaak
- Research Unit in Environmental and Evolutionary Biology, Institute of Life, Earth and the Environment, Namur Institute of Complex Systems, University of Namur, Namur, Belgium.,Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA
| | - Frederik De Laender
- Research Unit in Environmental and Evolutionary Biology, Institute of Life, Earth and the Environment, Namur Institute of Complex Systems, University of Namur, Namur, Belgium
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11
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Calderón-Sanou I, Münkemüller T, Zinger L, Schimann H, Yoccoz NG, Gielly L, Foulquier A, Hedde M, Ohlmann M, Roy M, Si-Moussi S, Thuiller W. Cascading effects of moth outbreaks on subarctic soil food webs. Sci Rep 2021; 11:15054. [PMID: 34301993 PMCID: PMC8302651 DOI: 10.1038/s41598-021-94227-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Accepted: 07/06/2021] [Indexed: 11/18/2022] Open
Abstract
The increasing severity and frequency of natural disturbances requires a better understanding of their effects on all compartments of biodiversity. In Northern Fennoscandia, recent large-scale moth outbreaks have led to an abrupt change in plant communities from birch forests dominated by dwarf shrubs to grass-dominated systems. However, the indirect effects on the belowground compartment remained unclear. Here, we combined eDNA surveys of multiple trophic groups with network analyses to demonstrate that moth defoliation has far-reaching consequences on soil food webs. Following this disturbance, diversity and relative abundance of certain trophic groups declined (e.g., ectomycorrhizal fungi), while many others expanded (e.g., bacterivores and omnivores) making soil food webs more diverse and structurally different. Overall, the direct and indirect consequences of moth outbreaks increased belowground diversity at different trophic levels. Our results highlight that a holistic view of ecosystems improves our understanding of cascading effects of major disturbances on soil food webs.
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Affiliation(s)
- Irene Calderón-Sanou
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Laboratoire d'Ecologie Alpine, 38000, Grenoble, France.
| | - Tamara Münkemüller
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Laboratoire d'Ecologie Alpine, 38000, Grenoble, France
| | - Lucie Zinger
- Institut de Biologie de L'ENS (IBENS), Département de biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France
| | - Heidy Schimann
- INRA EcoFoG (AgroParisTech, CNRS, CIRAD, INRA, Université Des Antilles, Université de Guyane), Kourou, France
| | - Nigel Gilles Yoccoz
- Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway
| | - Ludovic Gielly
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Laboratoire d'Ecologie Alpine, 38000, Grenoble, France
| | - Arnaud Foulquier
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Laboratoire d'Ecologie Alpine, 38000, Grenoble, France
| | - Mickael Hedde
- Eco&Sols, Univ Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, 34398, Montpellier, France
| | - Marc Ohlmann
- Université Savoie Mont-Blanc, LAMA, 73000, Chambéry, France
| | - Mélanie Roy
- Laboratoire Évolution Et Diversité Biologique, CNRS, UMR 5174 UPS CNRS IRD, Université Toulouse 3 Paul Sabatier, Toulouse, France
- Instituto Franco-Argentino Para El Estudio del Clima Y Sus Impactos (UMI IFAECI/CNRS-CONICET-UBA-IRD), Dpto. de Ciencias de La Atmosfera Y Los Oceanos, FCEN, Universidad de Buenos Aires, Intendente Guiraldes 2160 - Ciudad Universitaria (C1428EGA), Ciudad Autónoma de Buenos Aires, Argentina
| | - Sara Si-Moussi
- Eco&Sols, Univ Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, 34398, Montpellier, France
| | - Wilfried Thuiller
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Laboratoire d'Ecologie Alpine, 38000, Grenoble, France
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12
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Robert Burger J, Hou C, A S Hall C, Brown JH. Universal rules of life: metabolic rates, biological times and the equal fitness paradigm. Ecol Lett 2021; 24:1262-1281. [PMID: 33884749 DOI: 10.1111/ele.13715] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/10/2021] [Indexed: 01/08/2023]
Abstract
Here we review and extend the equal fitness paradigm (EFP) as an important step in developing and testing a synthetic theory of ecology and evolution based on energy and metabolism. The EFP states that all organisms are equally fit at steady state, because they allocate the same quantity of energy, ~ 22.4 kJ/g/generation to the production of offspring. On the one hand, the EFP may seem tautological, because equal fitness is necessary for the origin and persistence of biodiversity. On the other hand, the EFP reflects universal laws of life: how biological metabolism - the uptake, transformation and allocation of energy - links ecological and evolutionary patterns and processes across levels of organisation from: (1) structure and function of individual organisms, (2) life history and dynamics of populations, and (3) interactions and coevolution of species in ecosystems. The physics and biology of metabolism have facilitated the evolution of millions of species with idiosyncratic anatomy, physiology, behaviour and ecology but also with many shared traits and tradeoffs that reflect the single origin and universal rules of life.
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Affiliation(s)
- Joseph Robert Burger
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721, USA.,Arizona Institutes for Resilience, University of Arizona, Tucson, AZ, 85721, USA
| | - Chen Hou
- Department of Biological Science, Missouri University of Science and Technology, Rolla, MO, 65409, USA
| | - Charles A S Hall
- Department of Environmental and Forest Biology and Program in Environmental Science, College of Environmental Science and Forestry, State University of New York, Syracuse, NY, 13210, USA
| | - James H Brown
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
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Ansmann G, Bollenbach T. Building clone-consistent ecosystem models. PLoS Comput Biol 2021; 17:e1008635. [PMID: 33556059 PMCID: PMC7895417 DOI: 10.1371/journal.pcbi.1008635] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 02/19/2021] [Accepted: 12/15/2020] [Indexed: 11/18/2022] Open
Abstract
Many ecological studies employ general models that can feature an arbitrary number of populations. A critical requirement imposed on such models is clone consistency: If the individuals from two populations are indistinguishable, joining these populations into one shall not affect the outcome of the model. Otherwise a model produces different outcomes for the same scenario. Using functional analysis, we comprehensively characterize all clone-consistent models: We prove that they are necessarily composed from basic building blocks, namely linear combinations of parameters and abundances. These strong constraints enable a straightforward validation of model consistency. Although clone consistency can always be achieved with sufficient assumptions, we argue that it is important to explicitly name and consider the assumptions made: They may not be justified or limit the applicability of models and the generality of the results obtained with them. Moreover, our insights facilitate building new clone-consistent models, which we illustrate for a data-driven model of microbial communities. Finally, our insights point to new relevant forms of general models for theoretical ecology. Our framework thus provides a systematic way of comprehending ecological models, which can guide a wide range of studies.
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Affiliation(s)
- Gerrit Ansmann
- Institute for Biological Physics, University of Cologne, Cologne, Germany
- * E-mail:
| | - Tobias Bollenbach
- Institute for Biological Physics, University of Cologne, Cologne, Germany
- Center for Data and Simulation Science, University of Cologne, Cologne, Germany
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14
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Pringle RM, Hutchinson MC. Resolving Food-Web Structure. ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS 2020. [DOI: 10.1146/annurev-ecolsys-110218-024908] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Food webs are a major focus and organizing theme of ecology, but the data used to assemble them are deficient. Early debates over food-web data focused on taxonomic resolution and completeness, lack of which had produced spurious inferences. Recent data are widely believed to be much better and are used extensively in theoretical and meta-analytic research on network ecology. Confidence in these data rests on the assumptions ( a) that empiricists correctly identified consumers and their foods and ( b) that sampling methods were adequate to detect a near-comprehensive fraction of the trophic interactions between species. Abundant evidence indicates that these assumptions are often invalid, suggesting that most topological food-web data may remain unreliable for inferences about network structure and underlying ecological and evolutionary processes. Morphologically cryptic species are ubiquitous across taxa and regions, and many trophic interactions routinely evade detection by conventional methods. Molecular methods have diagnosed the severity of these problems and are a necessary part of the cure.
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Affiliation(s)
- Robert M. Pringle
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, New Jersey 08544, USA
| | - Matthew C. Hutchinson
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, New Jersey 08544, USA
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15
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Abstract
The size or stage of interacting individuals is known to affect the outcome of ecological interactions and can have important consequences for population dynamics. This is also true for intraguild predation (the killing and eating of potential competitors), where the size or ontogenetic stage of an individual determines whether it is the intraguild predator or the intraguild prey. Studying size- or stage-specific interactions is therefore important, but can be challenging in species with complex life histories. Here, we investigated predatory interactions of all feeding stages of the two predatory mite species Neoseiulus californicus and Phytoseiulus macropilis, both of which have complex life cycles, typical for predatory arthropods. Populations of these two species compete for two-spotted spider mites, their prey. We evaluated both the capacity to kill stages of the other predator species and the capacity to benefit from feeding on these stages, both prerequisites for the occurrence of intraguild predation. Ontogeny played a critical role in the occurrence of intraguild predation. Whereas the juveniles of P. macropilis developed from larva until adulthood when feeding on N. californicus eggs, interestingly, adult female P. macropilis did not feed on the smaller stages of the other species. We furthermore show that intraguild predation was reciprocal: both juveniles and adult females of N. californicus preyed on the smallest stages of P. macropilis. These results suggest that a proper analysis of the interactions between pairs of species involved in intraguild predation should start with an inventory of the interactions among all ontogenetic stages of these species.
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Mendonça V, Madeira C, Dias M, Vermandele F, Archambault P, Dissanayake A, Canning-Clode J, Flores AAV, Silva A, Vinagre C. What's in a tide pool? Just as much food web network complexity as in large open ecosystems. PLoS One 2018; 13:e0200066. [PMID: 29975745 PMCID: PMC6033428 DOI: 10.1371/journal.pone.0200066] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Accepted: 06/19/2018] [Indexed: 11/19/2022] Open
Abstract
Understanding the fundamental laws that govern complex food web networks over large ecosystems presents high costs and oftentimes unsurmountable logistical challenges. This way, it is crucial to find smaller systems that can be used as proxy food webs. Intertidal rock pool environments harbour particularly high biodiversity over small areas. This study aimed to analyse their food web networks to investigate their potential as proxies of larger ecosystems for food web networks research. Highly resolved food webs were compiled for 116 intertidal rock pools from cold, temperate, subtropical and tropical regions, to ensure a wide representation of environmental variability. The network properties of these food webs were compared to that of estuaries, lakes and rivers, as well as marine and terrestrial ecosystems (46 previously published complex food webs). The intertidal rock pool food webs analysed presented properties that were in the same range as the previously published food webs. The niche model predictive success was remarkably high (73–88%) and similar to that previously found for much larger marine and terrestrial food webs. By using a large-scale sampling effort covering 116 intertidal rock pools in several biogeographic regions, this study showed, for the first time, that intertidal rock pools encompass food webs that share fundamental organizational characteristics with food webs from markedly different, larger, open and abiotically stable ecosystems. As small, self-contained habitats, intertidal rock pools are particularly tractable systems and therefore a large number of food webs can be examined with relatively low sampling effort. This study shows, for the first time that they can be useful models for the understanding of universal processes that regulate the complex network organization of food webs, which are harder or impossible to investigate in larger, open ecosystems, due to high costs and logistical difficulties.
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Affiliation(s)
- Vanessa Mendonça
- MARE–Marine and Environmental Sciences Centre, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - Carolina Madeira
- MARE–Marine and Environmental Sciences Centre, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - Marta Dias
- MARE–Marine and Environmental Sciences Centre, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - Fanny Vermandele
- Université du Québec à Rimouski, Département de Biologie, Chimie et Géographie, Rimouski, Canada
| | - Philippe Archambault
- Département de biologie, Takuvik, Québec-Océan, Université Laval, Québec, Canada
| | - Awantha Dissanayake
- School of Biological Sciences, Plymouth University, Plymouth, United Kingdom
| | - João Canning-Clode
- MARE–Marine and Environmental Sciences Centre, Quinta do Lorde Marina, Sítio da Piedade, Caniçal, Madeira Island, Portugal
- Centre of IMAR of the University of the Azores, Department of Oceanography and Fisheries, Rua Prof. Dr. Frederico Machado, Horta, Azores, Portugal
- Smithsonian Environmental Research Center, Edgewater, MD, United States of America
| | - Augusto A. V. Flores
- Centro de Biologia Marinha, Universidade de São Paulo, Rod. Manoel Hipólito do Rego, São Sebastião, SP, Brazil
| | - Ana Silva
- CERIS, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal
| | - Catarina Vinagre
- MARE–Marine and Environmental Sciences Centre, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- * E-mail:
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17
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Monteiro AB, Faria LDB. Matching consumer feeding behaviours and resource traits: a fourth-corner problem in food-web theory. Ecol Lett 2018; 21:1237-1243. [PMID: 29877014 DOI: 10.1111/ele.13096] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Revised: 01/02/2018] [Accepted: 05/12/2018] [Indexed: 11/30/2022]
Abstract
For decades, food web theory has proposed phenomenological models for the underlying structure of ecological networks. Generally, these models rely on latent niche variables that match the feeding behaviour of consumers with their resource traits. In this paper, we used a comprehensive database to evaluate different hypotheses on the best dependency structure of trait-matching patterns between consumers and resource traits. We found that consumer feeding behaviours had complex interactions with resource traits; however, few dimensions (i.e. latent variables) could reproduce the trait-matching patterns. We discuss our findings in the light of three food web models designed to reproduce the multidimensionality of food web data; additionally, we discuss how using species traits clarify food webs beyond species pairwise interactions and enable studies to infer ecological generality at larger scales, despite potential taxonomic differences, variations in ecological conditions and differences in species abundance between communities.
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18
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Peralta-Maraver I, Robertson AL, Rezende EL, Lemes da Silva AL, Tonetta D, Lopes M, Schmitt R, Leite NK, Nuñer A, Petrucio MM. Winter is coming: Food web structure and seasonality in a subtropical freshwater coastal lake. Ecol Evol 2017; 7:4534-4542. [PMID: 28690784 PMCID: PMC5496567 DOI: 10.1002/ece3.3031] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Revised: 04/02/2017] [Accepted: 04/12/2017] [Indexed: 11/05/2022] Open
Abstract
Food web studies provide a useful tool to assess the organization and complexity of natural communities. Nevertheless, the seasonal dynamics of food web properties, their environmental correlates, and potential association with community diversity and stability remain poorly studied. Here, we condensed an incomplete 6-year community dataset of a subtropical coastal lake to examine how monthly variation in diversity impacts food web structure over an idealized time series for an averaged year. Phytoplankton, zooplankton, macroinvertebrates, and fish were mostly resolved to species level (n = 120 trophospecies). Our results showed that the seasonal organization of the food web could be aggregated into two clusters of months grouped here as 'summer' and 'winter'. During 'winter', the food web decreases in size and complexity, with the number of trophospecies dropping from 106 to 82 (a 22.6% decrease in the number of nodes) and the trophic interactions from 1,049 to 637 between month extremes (a 39.3% drop in the number of links). The observed simplification in food web structure during 'winter' suggests that community stability is more vulnerable to the impact of any change during this period.
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Affiliation(s)
| | | | - Enrico L Rezende
- Departamento de Ecología Facultad de Ecología y Recursos Naturales Universidad Andres Bello Santiago Chile
| | | | - Denise Tonetta
- Department of Ecology and Zoology Federal University of Santa Catarina Florianópolis Brazil
| | - Michelle Lopes
- Department of Ecology and Zoology Federal University of Santa Catarina Florianópolis Brazil
| | - Rafael Schmitt
- Department of Ecology and Zoology Federal University of Santa Catarina Florianópolis Brazil
| | - Nei K Leite
- Department of Ecology and Zoology Federal University of Santa Catarina Florianópolis Brazil
| | - Alex Nuñer
- Department Aquaculture Federal University of Santa Catarina Florianópolis Brazil
| | - Mauricio M Petrucio
- Department of Ecology and Zoology Federal University of Santa Catarina Florianópolis Brazil
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19
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Monteiro AB, Del Bianco Faria L. Causal relationships between population stability and food‐web topology. Funct Ecol 2017. [DOI: 10.1111/1365-2435.12833] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Angelo B. Monteiro
- Setor de Ecologia e Conservação Departamento de Biologia Universidade Federal de Lavras CEP 37200‐000 Lavras MG Brazil
| | - Lucas Del Bianco Faria
- Setor de Ecologia e Conservação Departamento de Biologia Universidade Federal de Lavras CEP 37200‐000 Lavras MG Brazil
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20
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Peterson CC, Keppeler FW, Saenz DE, Bower LM, Winemiller KO. Seasonal variation in fish trophic networks in two clear-water streams in the Central Llanos region, Venezuela. NEOTROPICAL ICHTHYOLOGY 2017. [DOI: 10.1590/1982-0224-20160125] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
ABSTRACT Food webs are not static entities; consumer resource interactions vary in both time and space, which complicates depiction and comparisons of food web structures. We estimated fish assemblage structure and diets in two clear-water streams in the Venezuelan Llanos region (Charcote and Charcotico) and constructed trophic networks (sub-webs defined by fishes as the principal consumers) during four periods of the annual flood pulse. As stream conditions changed from high-water to low-water, we hypothesized that: 1) the piscivore-non-piscivore ratio would increase; 2) dietary diversity would decrease; 3) interspecific dietary overlap would decline; 4) fewer allochthonous food items would be consumed; and 5) food-web connectance would increase. The piscivore-non-piscivore abundance ratio was higher in both streams during the low-water period. Dietary diversity declined as water levels dropped and availability of aquatic habitats and resources declined, but interspecific dietary overlap was not lower. Contrary to our hypothesis, average interspecific dietary overlap increased at Charcote as the dry season progressed, even though dietary overlap among species was significantly lower than expected by chance. We did not find strong support for our hypotheses regarding seasonal patterns of consumption of allochthonous resources and food web connectance, both of which revealed little seasonal variation.
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21
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Médoc V, Firmat C, Sheath D, Pegg J, Andreou D, Britton J. Parasites and Biological Invasions. ADV ECOL RES 2017. [DOI: 10.1016/bs.aecr.2016.10.003] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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22
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Layton A, Bras B, Weissburg M. Designing Industrial Networks Using Ecological Food Web Metrics. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2016; 50:11243-11252. [PMID: 27611963 DOI: 10.1021/acs.est.6b03066] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Biologically Inspired Design (biomimicry) and Industrial Ecology both look to natural systems to enhance the sustainability and performance of engineered products, systems and industries. Bioinspired design (BID) traditionally has focused on a unit operation and single product level. In contrast, this paper describes how principles of network organization derived from analysis of ecosystem properties can be applied to industrial system networks. Specifically, this paper examines the applicability of particular food web matrix properties as design rules for economically and biologically sustainable industrial networks, using an optimization model developed for a carpet recycling network. Carpet recycling network designs based on traditional cost and emissions based optimization are compared to designs obtained using optimizations based solely on ecological food web metrics. The analysis suggests that networks optimized using food web metrics also were superior from a traditional cost and emissions perspective; correlations between optimization using ecological metrics and traditional optimization ranged generally from 0.70 to 0.96, with flow-based metrics being superior to structural parameters. Four structural food parameters provided correlations nearly the same as that obtained using all structural parameters, but individual structural parameters provided much less satisfactory correlations. The analysis indicates that bioinspired design principles from ecosystems can lead to both environmentally and economically sustainable industrial resource networks, and represent guidelines for designing sustainable industry networks.
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Affiliation(s)
- Astrid Layton
- George W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology , Atlanta, Georgia 30332 United States
| | - Bert Bras
- George W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology , Atlanta, Georgia 30332 United States
| | - Marc Weissburg
- School of Biology, Georgia Institute of Technology , Atlanta, Georgia 30332 United States
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23
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Affiliation(s)
- Pedro Jordano
- Integrative Ecology Group Estación Biológica de Doñana, Consejo Superior de Investigaciones Científicas (EBD‐CSIC) Avenida Americo Vespucio s/n SevillaE–41092 Spain
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24
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Smith TC, Knapp RA, Briggs CJ. Declines and extinctions of mountain yellow‐legged frogs have small effects on benthic macroinvertebrate communities. Ecosphere 2016. [DOI: 10.1002/ecs2.1327] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Affiliation(s)
- Thomas C. Smith
- Department of Ecology, Evolution, and Marine BiologyUniversity of California Santa Barbara California 93106 USA
| | - Roland A. Knapp
- Sierra Nevada Aquatic Research LaboratoryUniversity of California 1016 Mount Morrison Road Mammoth Lakes California 93546 USA
| | - Cheryl J. Briggs
- Department of Ecology, Evolution, and Marine BiologyUniversity of California Santa Barbara California 93106 USA
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25
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Roslin T, Majaneva S. The use of DNA barcodes in food web construction-terrestrial and aquatic ecologists unite! Genome 2016; 59:603-28. [PMID: 27484156 DOI: 10.1139/gen-2015-0229] [Citation(s) in RCA: 68] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
By depicting who eats whom, food webs offer descriptions of how groupings in nature (typically species or populations) are linked to each other. For asking questions on how food webs are built and work, we need descriptions of food webs at different levels of resolution. DNA techniques provide opportunities for highly resolved webs. In this paper, we offer an exposé of how DNA-based techniques, and DNA barcodes in particular, have recently been used to construct food web structure in both terrestrial and aquatic systems. We highlight how such techniques can be applied to simultaneously improve the taxonomic resolution of the nodes of the web (i.e., the species), and the links between them (i.e., who eats whom). We end by proposing how DNA barcodes and DNA information may allow new approaches to the construction of larger interaction webs, and overcome some hurdles to achieving adequate sample size. Most importantly, we propose that the joint adoption and development of these techniques may serve to unite approaches to food web studies in aquatic and terrestrial systems-revealing the extent to which food webs in these environments are structured similarly to or differently from each other, and how they are linked by dispersal.
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Affiliation(s)
- Tomas Roslin
- a Department of Ecology, Swedish University of Agricultural Sciences, Box 7044, 750 07 Uppsala, Sweden.,b Spatial Foodweb Ecology Group, Department of Agricultural Sciences, PO Box 27, (Latokartanonkaari 5), FI-00014 University of Helsinki, Finland
| | - Sanna Majaneva
- c Centre for Ecology and Evolution in Microbial model Systems (EEMiS), Department of Biology and Environmental Science, Linnaeus University, 39182 Kalmar, Sweden
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26
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Gellner G, McCann KS. Consistent role of weak and strong interactions in high- and low-diversity trophic food webs. Nat Commun 2016; 7:11180. [PMID: 27068000 PMCID: PMC4832055 DOI: 10.1038/ncomms11180] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2015] [Accepted: 02/26/2016] [Indexed: 12/03/2022] Open
Abstract
The growing realization of a looming biodiversity crisis has inspired considerable progress in the quest to link biodiversity, structure and ecosystem function. Here we construct a method that bridges low- and high-diversity approaches to food web theory by elucidating the connection between the stability of the basic building block of food webs and the mean stability properties of large random food web networks. Applying this theoretical framework to common food web models reveals two key findings. First, in almost all cases, high-diversity food web models yield a stability relationship between weak and strong interactions that are compatible in every way to simple low-diversity models. And second, the models that generate the recently discovered phenomena of being purely stabilized by increasing interaction strength correspond to the biologically implausible assumption of perfect interaction strength symmetry.
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Affiliation(s)
- Gabriel Gellner
- Department of Environmental Science and Policy, University of California Davis, 1 Shields Avenue, Davis, California 95616, USA
| | - Kevin S. McCann
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada N1G 2W1
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Abstract
In most ecosystems, microbes are the dominant consumers, commandeering much of the heterotrophic biomass circulating through food webs. Characterizing functional diversity within the microbiome, therefore, is critical to understanding ecosystem functioning, particularly in an era of global biodiversity loss. Using isotopic fingerprinting, we investigated the trophic positions of a broad diversity of heterotrophic organisms. Specifically, we examined the naturally occurring stable isotopes of nitrogen ((15)N:(14)N) within amino acids extracted from proteobacteria, actinomycetes, ascomycetes, and basidiomycetes, as well as from vertebrate and invertebrate macrofauna (crustaceans, fish, insects, and mammals). Here, we report that patterns of intertrophic (15)N-discrimination were remarkably similar among bacteria, fungi, and animals, which permitted unambiguous measurement of consumer trophic position, independent of phylogeny or ecosystem type. The observed similarities among bacterial, fungal, and animal consumers suggest that within a trophic hierarchy, microbiota are equivalent to, and can be interdigitated with, macrobiota. To further test the universality of this finding, we examined Neotropical fungus gardens, communities in which bacteria, fungi, and animals are entwined in an ancient, quadripartite symbiosis. We reveal that this symbiosis is a discrete four-level food chain, wherein bacteria function as the apex carnivores, animals and fungi are meso-consumers, and the sole herbivores are fungi. Together, our findings demonstrate that bacteria, fungi, and animals can be integrated within a food chain, effectively uniting the macro- and microbiome in food web ecology and facilitating greater inclusion of the microbiome in studies of functional diversity.
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28
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A primer on the history of food web ecology: Fundamental contributions of fourteen researchers. FOOD WEBS 2015. [DOI: 10.1016/j.fooweb.2015.07.001] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Bartley TJ, Braid HE, McCann KS, Lester NP, Shuter BJ, Shuter BJ, Hanner RH. DNA barcoding increases resolution and changes structure in Canadian boreal shield lake food webs. ACTA ACUST UNITED AC 2015. [DOI: 10.1515/dna-2015-0005] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractFood webs are important in understanding the structure, function, and behaviour of ecosystems, but, due to methodological limitations, are often poorly resolved in ways that impact food-web properties. Although DNA barcoding has proven useful in determining the diet of consumers, few studies have used this technique to determine food-web structure. These studies report mixed impacts on various food-web properties, but are limited by their taxonomic focus and their failure to evaluate DNA barcoding for both diet analysis and food-web structure. In this study, we show that, when compared to a morphological approach, DNA barcoding increases foodweb resolution by increasing the number and frequency of prey species identified in the stomach contents of eight species of Canadian boreal shield predatory fishes. In addition, we observed differences in food-web structure, such as increased generalism, habitat coupling, and omnivory, that have strong implications for food-web stability and dynamics. We conclude that DNA barcoding is a powerful tool to evaluate how resolution impacts foodweb properties and can help further our understanding of how food webs are structured by identifying feeding interactions in an unprecedented and highly detailed manner.
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Rudolf VHW, Rasmussen NL. Population structure determines functional differences among species and ecosystem processes. Nat Commun 2014; 4:2318. [PMID: 23933614 DOI: 10.1038/ncomms3318] [Citation(s) in RCA: 74] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2013] [Accepted: 07/17/2013] [Indexed: 11/09/2022] Open
Abstract
Linking the structure of communities to ecosystem functioning has been a perennial challenge in ecology. Studies on ecosystem function are traditionally focused on changes in species composition. However, this species-centric approach neglects the often dramatic changes in the ecology of organisms during their development, thereby limiting our ability to link the structure of populations and communities to the functioning of natural ecosystems. Here we experimentally demonstrate that the impact of organisms on community structure and ecosystem processes often differ more among developmental stages within a species than between species, contrary to current assumptions. Importantly, we show that functional differences between species vary depending on the specific demographic structure of predators. One important implication is that changes in the demography of populations can strongly alter the functional composition of communities and change ecosystem processes long before any species are extirpated from communities.
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Affiliation(s)
- Volker H W Rudolf
- Department of Ecology and Evolutionary Biology, Rice University, 6100 Main Street-MS 170, Houston, Texas 77005, USA.
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33
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Heleno R, Garcia C, Jordano P, Traveset A, Gómez JM, Blüthgen N, Memmott J, Moora M, Cerdeira J, Rodríguez-Echeverría S, Freitas H, Olesen JM. Ecological networks: delving into the architecture of biodiversity. Biol Lett 2014; 10:20131000. [PMID: 24402718 DOI: 10.1098/rsbl.2013.1000] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
In recent years, the analysis of interaction networks has grown popular as a framework to explore ecological processes and the relationships between community structure and its functioning. The field has rapidly grown from its infancy to a vibrant youth, as reflected in the variety and quality of the discussions held at the first international symposium on Ecological Networks in Coimbra-Portugal (23-25 October 2013). The meeting gathered 170 scientists from 22 countries, who presented data from a broad geographical range, and covering all stages of network analyses, from sampling strategies to effective ways of communicating results, presenting new analytical tools, incorporation of temporal and spatial dynamics, new applications and visualization tools.(1) During the meeting it became evident that while many of the caveats diagnosed in early network studies are successfully being tackled, new challenges arise, attesting to the health of the discipline.
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Affiliation(s)
- Ruben Heleno
- Department of Life Sciences, Centre for Functional Ecology, University of Coimbra, , PO Box 3046, Coimbra 3001-455, Portugal
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Complex life cycles in a pond food web: effects of life stage structure and parasites on network properties, trophic positions and the fit of a probabilistic niche model. Oecologia 2013; 174:953-65. [DOI: 10.1007/s00442-013-2806-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2013] [Accepted: 10/09/2013] [Indexed: 11/25/2022]
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35
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Miranda M, Parrini F, Dalerum F. A categorization of recent network approaches to analyse trophic interactions. Methods Ecol Evol 2013. [DOI: 10.1111/2041-210x.12092] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- María Miranda
- Centre for African Ecology; School of Animal, Plant and Environmental Sciences; University of the Witwatersrand; Private Bag 3, Wits 2050; Johannesburg; South Africa
| | - Francesca Parrini
- Centre for African Ecology; School of Animal, Plant and Environmental Sciences; University of the Witwatersrand; Private Bag 3, Wits 2050; Johannesburg; South Africa
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Dunne JA, Lafferty KD, Dobson AP, Hechinger RF, Kuris AM, Martinez ND, McLaughlin JP, Mouritsen KN, Poulin R, Reise K, Stouffer DB, Thieltges DW, Williams RJ, Zander CD. Parasites affect food web structure primarily through increased diversity and complexity. PLoS Biol 2013; 11:e1001579. [PMID: 23776404 PMCID: PMC3679000 DOI: 10.1371/journal.pbio.1001579] [Citation(s) in RCA: 144] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2012] [Accepted: 05/01/2013] [Indexed: 01/11/2023] Open
Abstract
Parasites primarily affect food web structure through changes to diversity and complexity. However, compared to free-living species, their life-history traits lead to more complex feeding niches and altered motifs. Comparative research on food web structure has revealed generalities in trophic organization, produced simple models, and allowed assessment of robustness to species loss. These studies have mostly focused on free-living species. Recent research has suggested that inclusion of parasites alters structure. We assess whether such changes in network structure result from unique roles and traits of parasites or from changes to diversity and complexity. We analyzed seven highly resolved food webs that include metazoan parasite data. Our analyses show that adding parasites usually increases link density and connectance (simple measures of complexity), particularly when including concomitant links (links from predators to parasites of their prey). However, we clarify prior claims that parasites “dominate” food web links. Although parasites can be involved in a majority of links, in most cases classic predation links outnumber classic parasitism links. Regarding network structure, observed changes in degree distributions, 14 commonly studied metrics, and link probabilities are consistent with scale-dependent changes in structure associated with changes in diversity and complexity. Parasite and free-living species thus have similar effects on these aspects of structure. However, two changes point to unique roles of parasites. First, adding parasites and concomitant links strongly alters the frequency of most motifs of interactions among three taxa, reflecting parasites' roles as resources for predators of their hosts, driven by trophic intimacy with their hosts. Second, compared to free-living consumers, many parasites' feeding niches appear broader and less contiguous, which may reflect complex life cycles and small body sizes. This study provides new insights about generic versus unique impacts of parasites on food web structure, extends the generality of food web theory, gives a more rigorous framework for assessing the impact of any species on trophic organization, identifies limitations of current food web models, and provides direction for future structural and dynamical models. Food webs are networks of feeding interactions among species. Although parasites comprise a large proportion of species diversity, they have generally been underrepresented in food web data and analyses. Previous analyses of the few datasets that contain parasites have indicated that their inclusion alters network structure. However, it is unclear whether those alterations were a result of unique roles that parasites play, or resulted from the changes in diversity and complexity that would happen when any type of species is added to a food web. In this study, we analyzed many aspects of the network structure of seven highly resolved coastal estuary or marine food webs with parasites. In most cases, we found that including parasites in the analysis results in generic changes to food web structure that would be expected with increased diversity and complexity. However, in terms of specific patterns of links in the food web (“motifs”) and the breadth and contiguity of feeding niches, parasites do appear to alter structure in ways that result from unique traits—in particular, their close physical intimacy with their hosts, their complex life cycles, and their small body sizes. Thus, this study disentangles unique from generic effects of parasites on food web organization, providing better understanding of similarities and differences between parasites and free-living species in their roles as consumers and resources.
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Affiliation(s)
- Jennifer A Dunne
- Santa Fe Institute, Santa Fe, New Mexico, United States of America.
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37
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Evans DM, Pocock MJO, Memmott J. The robustness of a network of ecological networks to habitat loss. Ecol Lett 2013; 16:844-52. [PMID: 23692559 DOI: 10.1111/ele.12117] [Citation(s) in RCA: 70] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2013] [Revised: 01/03/2013] [Accepted: 04/04/2013] [Indexed: 11/27/2022]
Abstract
There have been considerable advances in our understanding of the tolerance of species interaction networks to sequential extinctions of plants and animals. However, communities of species exist in a mosaic of habitats, and the vulnerability of habitats to anthropogenic change varies. Here, we model the cascading effects of habitat loss, driven by plant extinctions, on the robustness of multiple animal groups. Our network is constructed from empirical observations of 11 animal groups in 12 habitats on farmland. We simulated sequential habitat removal scenarios: randomly; according to prior information; and with a genetic algorithm to identify best- and worst-case permutations of habitat loss. We identified two semi-natural habitats (waste ground and hedgerows together comprising < 5% of the total area of the farm) as disproportionately important to the integrity of the overall network. Our approach provides a new tool for network ecologists and for directing the management and restoration of multiple-habitat sites.
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Affiliation(s)
- Darren M Evans
- School of Biological Sciences, University of Bristol, Bristol, UK.
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Bohan DA, Raybould A, Mulder C, Woodward G, Tamaddoni-Nezhad A, Bluthgen N, Pocock MJ, Muggleton S, Evans DM, Astegiano J, Massol F, Loeuille N, Petit S, Macfadyen S. Networking Agroecology. ADV ECOL RES 2013. [DOI: 10.1016/b978-0-12-420002-9.00001-9] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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Traugott M, Kamenova S, Ruess L, Seeber J, Plantegenest M. Empirically Characterising Trophic Networks. ADV ECOL RES 2013. [DOI: 10.1016/b978-0-12-420002-9.00003-2] [Citation(s) in RCA: 116] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
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41
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Abstract
This review explores some of the reasons why food webs seem to contain relatively few parasite species when compared to the full diversity of free living species in the system. At present, there are few coherent food web theories to guide scientific studies on parasites, and this review posits that the methods, directions and questions in the field of food web ecology are not always congruent with parasitological inquiry. For example, topological analysis (the primary tool in food web studies) focuses on only one of six important steps in trematode life cycles, each of which requires a stable community dynamic to evolve. In addition, these transmission strategies may also utilize pathways within the food web that are not considered in traditional food web investigations. It is asserted that more effort must be focused on parasite-centric models, and a central theme is that many different approaches will be required. One promising approach is the old energetic perspective, which considers energy as the critical resource for all organisms, and the currency of all food web interactions. From the parasitological point of view, energy can be used to characterize the roles of parasites at all levels in the food web, from individuals to populations to community. The literature on parasite energetics in food webs is very sparse, but the evidence suggests that parasite species richness is low in food webs because parasites are limited by the quantity of energy available to their unique lifestyles.
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Affiliation(s)
- Michael V K Sukhdeo
- Department of Ecology, Evolution and Natural Resources, Center for Research on Animal Parasites, Rutgers University, New Brunswick, NJ 08901, USA.
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42
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Liu G, Yang Z, Su M, Chen B. The structure, evolution and sustainability of urban socio-economic system. ECOL INFORM 2012. [DOI: 10.1016/j.ecoinf.2011.10.001] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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43
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Mouquet N, Devictor V, Meynard CN, Munoz F, Bersier LF, Chave J, Couteron P, Dalecky A, Fontaine C, Gravel D, Hardy OJ, Jabot F, Lavergne S, Leibold M, Mouillot D, Münkemüller T, Pavoine S, Prinzing A, Rodrigues ASL, Rohr RP, Thébault E, Thuiller W. Ecophylogenetics: advances and perspectives. Biol Rev Camb Philos Soc 2012; 87:769-85. [PMID: 22432924 DOI: 10.1111/j.1469-185x.2012.00224.x] [Citation(s) in RCA: 206] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ecophylogenetics can be viewed as an emerging fusion of ecology, biogeography and macroevolution. This new and fast-growing field is promoting the incorporation of evolution and historical contingencies into the ecological research agenda through the widespread use of phylogenetic data. Including phylogeny into ecological thinking represents an opportunity for biologists from different fields to collaborate and has provided promising avenues of research in both theoretical and empirical ecology, towards a better understanding of the assembly of communities, the functioning of ecosystems and their responses to environmental changes. The time is ripe to assess critically the extent to which the integration of phylogeny into these different fields of ecology has delivered on its promise. Here we review how phylogenetic information has been used to identify better the key components of species interactions with their biotic and abiotic environments, to determine the relationships between diversity and ecosystem functioning and ultimately to establish good management practices to protect overall biodiversity in the face of global change. We evaluate the relevance of information provided by phylogenies to ecologists, highlighting current potential weaknesses and needs for future developments. We suggest that despite the strong progress that has been made, a consistent unified framework is still missing to link local ecological dynamics to macroevolution. This is a necessary step in order to interpret observed phylogenetic patterns in a wider ecological context. Beyond the fundamental question of how evolutionary history contributes to shape communities, ecophylogenetics will help ecology to become a better integrative and predictive science.
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Affiliation(s)
- Nicolas Mouquet
- Institut des Sciences de l'Evolution, UMR, CNRS, Université Montpellier, France.
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O'Gorman EJ, Fitch JE, Crowe TP. Multiple anthropogenic stressors and the structural properties of food webs. Ecology 2012; 93:441-8. [DOI: 10.1890/11-0982.1] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Coexistence of competing stage-structured populations. Sci Rep 2011; 1:107. [PMID: 22355624 PMCID: PMC3216590 DOI: 10.1038/srep00107] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2011] [Accepted: 09/22/2011] [Indexed: 11/18/2022] Open
Abstract
This paper analyzes the stability of a coexistence equilibrium point of a model for competition between two stage-structured populations. In this model, for each population, competition for resources may affect any one of the following population parameters: reproduction, juvenile survival, maturation rate, or adult survival. The results show that the competitive strength of a population is affected by (1) the ratio of the population parameter influenced by competition under no resource limitation (maximum compensatory capacity) over the same parameter under a resource limitation due to competition (equilibrium rate) and (2) the ratio of interspecific competition over intraspecific competition; this ratio was previously shown to depend on resource-use overlap. The former ratio, which we define as fitness, can be equalized by adjusting organisms' life history strategies, thereby promoting coexistence. We conclude that in addition to niche differentiation among populations, the life history strategies of organisms play an important role in coexistence.
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Williams RJ, Purves DW. The probabilistic niche model reveals substantial variation in the niche structure of empirical food webs. Ecology 2011; 92:1849-57. [DOI: 10.1890/11-0200.1] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Chacoff NP, Vázquez DP, Lomáscolo SB, Stevani EL, Dorado J, Padrón B. Evaluating sampling completeness in a desert plant-pollinator network. J Anim Ecol 2011; 81:190-200. [DOI: 10.1111/j.1365-2656.2011.01883.x] [Citation(s) in RCA: 226] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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48
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Liu G, Yang Z, Chen B, Zhang Y. Ecological network determination of sectoral linkages, utility relations and structural characteristics on urban ecological economic system. Ecol Modell 2011. [DOI: 10.1016/j.ecolmodel.2011.04.034] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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49
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Mulder C. World Wide Food Webs: power to feed ecologists. AMBIO 2011; 40:335-337. [PMID: 21644463 PMCID: PMC3357800 DOI: 10.1007/s13280-010-0069-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2010] [Accepted: 05/24/2010] [Indexed: 05/30/2023]
Affiliation(s)
- Christian Mulder
- National Institute for Public Health and Environment (RIVM), Bilthoven, Netherland.
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50
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Effect of Stipa tenacissima L. on the structure of plant co-occurrence networks in a semi-arid community. Ecol Res 2011. [DOI: 10.1007/s11284-011-0818-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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