1
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Zucconi L, Cavallini G, Canini F. Trends in Antarctic soil fungal research in the context of environmental changes. Braz J Microbiol 2024; 55:1625-1634. [PMID: 38652442 PMCID: PMC11153391 DOI: 10.1007/s42770-024-01333-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 04/03/2024] [Indexed: 04/25/2024] Open
Abstract
Antarctic soils represent one of the most pristine environments on Earth, where highly adapted and often endemic microbial species withstand multiple extremes. Specifically, fungal diversity is extremely low in Antarctic soils and species distribution and diversity are still not fully characterized in the continent. Despite the unique features of this environment and the international interest in its preservation, several factors pose severe threats to the conservation of inhabiting ecosystems. In this light, we aimed to provide an overview of the effects on fungal communities of the main changes endangering the soils of the continent. Among these, the increasing human presence, both for touristic and scientific purposes, has led to increased use of fuels for transport and energy supply, which has been linked to an increase in unintentional environmental contamination. It has been reported that several fungal species have evolved cellular processes in response to these soil contamination episodes, which may be exploited for restoring contaminated areas at low temperatures. Additionally, the effects of climate change are another significant threat to Antarctic ecosystems, with the expected merging of previously isolated ecosystems and their homogenization. A possible reduction of biodiversity due to the disappearance of well-adapted, often endemic species, as well as an increase of biodiversity, due to the spreading of non-native, more competitive species have been suggested. Despite some studies describing the specialization of fungal communities and their correlation with environmental parameters, our comprehension of how soil communities may respond to these changes remains limited. The majority of studies attempting to precisely define the effects of climate change, including in situ and laboratory simulations, have mainly focused on the bacterial components of these soils, and further studies are necessary, including the other biotic components.
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Affiliation(s)
- Laura Zucconi
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy.
- National Research Council, Institute of Polar Sciences, Messina, Italy.
| | - Giorgia Cavallini
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - Fabiana Canini
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
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2
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Monsanto DM, Hedding DW, Durand S, Parbhu SP, Adair MG, Emami‐Khoyi A, Teske PR, Jansen van Vuuren B. The effect of terrain on the fine-scale genetic diversity of sub-Antarctic Collembola: A landscape genetics approach. Ecol Evol 2024; 14:e11519. [PMID: 38895565 PMCID: PMC11183960 DOI: 10.1002/ece3.11519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Revised: 05/08/2024] [Accepted: 05/20/2024] [Indexed: 06/21/2024] Open
Abstract
Biodiversity patterns are shaped by the interplay between geodiversity and organismal characteristics. Superimposing genetic structure onto landscape heterogeneity (i.e., landscape genetics) can help to disentangle their interactions and better understand population dynamics. Previous studies on the sub-Antarctic Prince Edward Islands (located midway between Antarctica and Africa) have highlighted the importance of landscape and climatic barriers in shaping spatial genetic patterns and have drawn attention to the value of these islands as natural laboratories for studying fundamental concepts in biology. Here, we assessed the fine-scale spatial genetic structure of the springtail, Cryptopygus antarcticus travei, which is endemic to Marion Island, in tandem with high-resolution geological data. Using a species-specific suite of microsatellite markers, a fine-scale sampling design incorporating landscape complexity and generalised linear models (GLMs), we examined genetic patterns overlaid onto high-resolution digital surface models and surface geology data across two 1-km sampling transects. The GLMs revealed that genetic patterns across the landscape closely track landscape resistance data in concert with landscape discontinuities and barriers to gene flow identified at a scale of a few metres. These results show that the island's geodiversity plays an important role in shaping biodiversity patterns and intraspecific genetic diversity. This study illustrates that fine-scale genetic patterns in soil arthropods are markedly more structured than anticipated, given that previous studies have reported high levels of genetic diversity and evidence of genetic structing linked to landscape changes for springtail species and considering the homogeneity of the vegetation complexes characteristic of the island at the scale of tens to hundreds of metres. By incorporating fine-scale and high-resolution landscape features into our study, we were able to explain much of the observed spatial genetic patterns. Our study highlights geodiversity as a driver of spatial complexity. More widely, it holds important implications for the conservation and management of the sub-Antarctic islands.
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Affiliation(s)
- Daniela Marques Monsanto
- Department of Zoology, Centre for Ecological Genomics and Wildlife ConservationUniversity of JohannesburgAuckland ParkSouth Africa
| | | | - Sandra Durand
- Department of GeographyUniversity of South AfricaPretoriaSouth Africa
| | - Shilpa Pradeep Parbhu
- Department of Zoology, Centre for Ecological Genomics and Wildlife ConservationUniversity of JohannesburgAuckland ParkSouth Africa
| | - Matthew Grant Adair
- Department of Zoology, Centre for Ecological Genomics and Wildlife ConservationUniversity of JohannesburgAuckland ParkSouth Africa
| | - Arsalan Emami‐Khoyi
- Department of Zoology, Centre for Ecological Genomics and Wildlife ConservationUniversity of JohannesburgAuckland ParkSouth Africa
- Institute of Wildlife Management and Nature ConservationHungarian University of Agriculture and Life SciencesGödöllőHungary
| | - Peter Rodja Teske
- Department of Zoology, Centre for Ecological Genomics and Wildlife ConservationUniversity of JohannesburgAuckland ParkSouth Africa
| | - Bettine Jansen van Vuuren
- Department of Zoology, Centre for Ecological Genomics and Wildlife ConservationUniversity of JohannesburgAuckland ParkSouth Africa
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3
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Varliero G, Lebre PH, Adams B, Chown SL, Convey P, Dennis PG, Fan D, Ferrari B, Frey B, Hogg ID, Hopkins DW, Kong W, Makhalanyane T, Matcher G, Newsham KK, Stevens MI, Weigh KV, Cowan DA. Biogeographic survey of soil bacterial communities across Antarctica. MICROBIOME 2024; 12:9. [PMID: 38212738 PMCID: PMC10785390 DOI: 10.1186/s40168-023-01719-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 11/11/2023] [Indexed: 01/13/2024]
Abstract
BACKGROUND Antarctica and its unique biodiversity are increasingly at risk from the effects of global climate change and other human influences. A significant recent element underpinning strategies for Antarctic conservation has been the development of a system of Antarctic Conservation Biogeographic Regions (ACBRs). The datasets supporting this classification are, however, dominated by eukaryotic taxa, with contributions from the bacterial domain restricted to Actinomycetota and Cyanobacteriota. Nevertheless, the ice-free areas of the Antarctic continent and the sub-Antarctic islands are dominated in terms of diversity by bacteria. Our study aims to generate a comprehensive phylogenetic dataset of Antarctic bacteria with wide geographical coverage on the continent and sub-Antarctic islands, to investigate whether bacterial diversity and distribution is reflected in the current ACBRs. RESULTS Soil bacterial diversity and community composition did not fully conform with the ACBR classification. Although 19% of the variability was explained by this classification, the largest differences in bacterial community composition were between the broader continental and maritime Antarctic regions, where a degree of structural overlapping within continental and maritime bacterial communities was apparent, not fully reflecting the division into separate ACBRs. Strong divergence in soil bacterial community composition was also apparent between the Antarctic/sub-Antarctic islands and the Antarctic mainland. Bacterial communities were partially shaped by bioclimatic conditions, with 28% of dominant genera showing habitat preferences connected to at least one of the bioclimatic variables included in our analyses. These genera were also reported as indicator taxa for the ACBRs. CONCLUSIONS Overall, our data indicate that the current ACBR subdivision of the Antarctic continent does not fully reflect bacterial distribution and diversity in Antarctica. We observed considerable overlap in the structure of soil bacterial communities within the maritime Antarctic region and within the continental Antarctic region. Our results also suggest that bacterial communities might be impacted by regional climatic and other environmental changes. The dataset developed in this study provides a comprehensive baseline that will provide a valuable tool for biodiversity conservation efforts on the continent. Further studies are clearly required, and we emphasize the need for more extensive campaigns to systematically sample and characterize Antarctic and sub-Antarctic soil microbial communities. Video Abstract.
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Affiliation(s)
- Gilda Varliero
- Department of Biochemistry, Genetics and Microbiology, Centre for Microbial Ecology and Genomics, University of Pretoria, Pretoria, 0002, South Africa
- Rhizosphere Processes Group, Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland
| | - Pedro H Lebre
- Department of Biochemistry, Genetics and Microbiology, Centre for Microbial Ecology and Genomics, University of Pretoria, Pretoria, 0002, South Africa
| | - Byron Adams
- Department of Biology, Brigham Young University, Provo, UT, 84602, USA
- Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT, 84602, USA
| | - Steven L Chown
- Securing Antarctica's Environmental Future, School of Biological Sciences, Monash University, Clayton, VA, 3800, Australia
| | - Peter Convey
- British Antarctic Survey, Natural Environment Research Council, High Cross, Madingley Road, Cambridge, CB3 0ET, UK
- Department of Zoology, University of Johannesburg, PO Box 524, Auckland Park, 2006, South Africa
- Biodiversity of Antarctic and Sub-Antarctic Ecosystems (BASE), Santiago, Chile
| | - Paul G Dennis
- School of the Environment, The University of Queensland, Brisbane, QLD, 4072, Australia
| | - Dandan Fan
- State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources (TPESER), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Belinda Ferrari
- School of Biotechnology and Biomolecular Sciences, University of NSW, Sydney, NSW, 2052, Australia
| | - Beat Frey
- Rhizosphere Processes Group, Swiss Federal Research Institute WSL, 8903, Birmensdorf, Switzerland
| | - Ian D Hogg
- School of Science, University of Waikato, Hamilton, New Zealand
- Canadian High Arctic Research Station, Polar Knowledge Canada, Cambridge Bay, NU, Canada
| | - David W Hopkins
- SRUC - Scotland's Rural College, West Mains Road, Edinburgh, EH9 3JG, Scotland, UK
| | - Weidong Kong
- State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources (TPESER), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Thulani Makhalanyane
- Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, 0002, South Africa
| | - Gwynneth Matcher
- Department of Biochemistry and Microbiology, Rhodes University, Makhanda, South Africa
| | - Kevin K Newsham
- British Antarctic Survey, Natural Environment Research Council, High Cross, Madingley Road, Cambridge, CB3 0ET, UK
| | - Mark I Stevens
- Securing Antarctica's Environmental Future, Earth and Biological Sciences, South Australian Museum, Adelaide, SA, 5000, Australia
- School of Biological Sciences, University of Adelaide, Adelaide, SA, 5005, Australia
| | - Katherine V Weigh
- School of the Environment, The University of Queensland, Brisbane, QLD, 4072, Australia
| | - Don A Cowan
- Department of Biochemistry, Genetics and Microbiology, Centre for Microbial Ecology and Genomics, University of Pretoria, Pretoria, 0002, South Africa.
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4
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Tytgat B, Verleyen E, Sweetlove M, Van den Berge K, Pinseel E, Hodgson DA, Chown SL, Sabbe K, Wilmotte A, Willems A, Vyverman W. Polar lake microbiomes have distinct evolutionary histories. SCIENCE ADVANCES 2023; 9:eade7130. [PMID: 37976353 PMCID: PMC10656066 DOI: 10.1126/sciadv.ade7130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 10/19/2023] [Indexed: 11/19/2023]
Abstract
Toward the poles, life on land is increasingly dominated by microorganisms, yet the evolutionary origin of polar microbiomes remains poorly understood. Here, we use metabarcoding of Arctic, sub-Antarctic, and Antarctic lacustrine benthic microbial communities to test the hypothesis that high-latitude microbiomes are recruited from a globally dispersing species pool through environmental selection. We demonstrate that taxonomic overlap between the regions is limited within most phyla, even at higher-order taxonomic levels, with unique deep-branching phylogenetic clades being present in each region. We show that local and regional taxon richness and net diversification rate of regionally restricted taxa differ substantially between polar regions in both microeukaryotic and bacterial biota. This suggests that long-term evolutionary divergence resulting from low interhemispheric dispersal and diversification in isolation has been a prominent process shaping present-day polar lake microbiomes. Our findings illuminate the distinctive biogeography of polar lake ecosystems and underscore that conservation efforts should include their unique microbiota.
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Affiliation(s)
- Bjorn Tytgat
- Laboratory of Protistology and Aquatic Ecology, Ghent University, Gent, Belgium
| | - Elie Verleyen
- Laboratory of Protistology and Aquatic Ecology, Ghent University, Gent, Belgium
| | - Maxime Sweetlove
- Laboratory of Protistology and Aquatic Ecology, Ghent University, Gent, Belgium
| | - Koen Van den Berge
- Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Gent, Belgium
| | - Eveline Pinseel
- Laboratory of Protistology and Aquatic Ecology, Ghent University, Gent, Belgium
- Meise Botanic Garden, Meise, Belgium
| | - Dominic A. Hodgson
- British Antarctic Survey, Natural Environment Research Council, Cambridge, UK
- Department of Geography, Durham University, Durham, UK
| | - Steven L. Chown
- Securing Antarctica’s Environmental Future, School of Biological Sciences, Monash University, Melbourne, VIC, Australia
| | - Koen Sabbe
- Laboratory of Protistology and Aquatic Ecology, Ghent University, Gent, Belgium
| | - Annick Wilmotte
- InBio-Centre for Protein Engineering, University of Liège, Liège, Belgium
| | - Anne Willems
- Laboratory of Microbiology, Ghent University, Gent, Belgium
| | | | - Wim Vyverman
- Laboratory of Protistology and Aquatic Ecology, Ghent University, Gent, Belgium
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5
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Lee JR, Waterman MJ, Shaw JD, Bergstrom DM, Lynch HJ, Wall DH, Robinson SA. Islands in the ice: Potential impacts of habitat transformation on Antarctic biodiversity. GLOBAL CHANGE BIOLOGY 2022; 28:5865-5880. [PMID: 35795907 PMCID: PMC9542894 DOI: 10.1111/gcb.16331] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 06/15/2022] [Indexed: 05/04/2023]
Abstract
Antarctic biodiversity faces an unknown future with a changing climate. Most terrestrial biota is restricted to limited patches of ice-free land in a sea of ice, where they are adapted to the continent's extreme cold and wind and exploit microhabitats of suitable conditions. As temperatures rise, ice-free areas are predicted to expand, more rapidly in some areas than others. There is high uncertainty as to how species' distributions, physiology, abundance, and survivorship will be affected as their habitats transform. Here we use current knowledge to propose hypotheses that ice-free area expansion (i) will increase habitat availability, though the quality of habitat will vary; (ii) will increase structural connectivity, although not necessarily increase opportunities for species establishment; (iii) combined with milder climates will increase likelihood of non-native species establishment, but may also lengthen activity windows for all species; and (iv) will benefit some species and not others, possibly resulting in increased homogeneity of biodiversity. We anticipate considerable spatial, temporal, and taxonomic variation in species responses, and a heightened need for interdisciplinary research to understand the factors associated with ecosystem resilience under future scenarios. Such research will help identify at-risk species or vulnerable localities and is crucial for informing environmental management and policymaking into the future.
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Affiliation(s)
- Jasmine R. Lee
- British Antarctic SurveyNERCCambridgeUK
- Securing Antarctica's Environmental Future, School of Biology and Environmental ScienceQueensland University of TechnologyBrisbaneQLDAustralia
| | - Melinda J. Waterman
- Securing Antarctica's Environmental Future, School of Earth, Atmospheric and Life SciencesUniversity of WollongongWollongongNew South WalesAustralia
| | - Justine D. Shaw
- Securing Antarctica's Environmental Future, School of Biology and Environmental ScienceQueensland University of TechnologyBrisbaneQLDAustralia
| | - Dana M. Bergstrom
- Australian Antarctic Division, Department of AgricultureWater and the EnvironmentKingstonTASAustralia
- Global Challenges ProgramUniversity of WollongongWollongongNew South WalesAustralia
| | - Heather J. Lynch
- Department of Ecology and EvolutionStony Brook UniversityStony BrookNew YorkUSA
| | - Diana H. Wall
- Department of Biology and School of Global Environmental SustainabilityColorado State UniversityFort CollinsColoradoUSA
| | - Sharon A. Robinson
- Securing Antarctica's Environmental Future, School of Earth, Atmospheric and Life SciencesUniversity of WollongongWollongongNew South WalesAustralia
- Global Challenges ProgramUniversity of WollongongWollongongNew South WalesAustralia
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6
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Beet CR, Hogg ID, Cary SC, McDonald IR, Sinclair BJ. The Resilience of Polar Collembola (Springtails) in a Changing Climate. CURRENT RESEARCH IN INSECT SCIENCE 2022; 2:100046. [PMID: 36683955 PMCID: PMC9846479 DOI: 10.1016/j.cris.2022.100046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 08/30/2022] [Accepted: 09/08/2022] [Indexed: 06/17/2023]
Abstract
Assessing the resilience of polar biota to climate change is essential for predicting the effects of changing environmental conditions for ecosystems. Collembola are abundant in terrestrial polar ecosystems and are integral to food-webs and soil nutrient cycling. Using available literature, we consider resistance (genetic diversity; behavioural avoidance and physiological tolerances; biotic interactions) and recovery potential for polar Collembola. Polar Collembola have high levels of genetic diversity, considerable capacity for behavioural avoidance, wide thermal tolerance ranges, physiological plasticity, generalist-opportunistic feeding habits and broad ecological niches. The biggest threats to the ongoing resistance of polar Collembola are increasing levels of dispersal (gene flow), increased mean and extreme temperatures, drought, changing biotic interactions, and the arrival and spread of invasive species. If resistance capacities are insufficient, numerous studies have highlighted that while some species can recover from disturbances quickly, complete community-level recovery is exceedingly slow. Species dwelling deeper in the soil profile may be less able to resist climate change and may not recover in ecologically realistic timescales given the current rate of climate change. Ultimately, diverse communities are more likely to have species or populations that are able to resist or recover from disturbances. While much of the Arctic has comparatively high levels of diversity and phenotypic plasticity; areas of Antarctica have extremely low levels of diversity and are potentially much more vulnerable to climate change.
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Affiliation(s)
- Clare R. Beet
- Te Aka Mātuatua - School of Science, Te Whare Wānanga o Waikato - University of Waikato, Hamilton, New Zealand
- International Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand
| | - Ian D. Hogg
- Te Aka Mātuatua - School of Science, Te Whare Wānanga o Waikato - University of Waikato, Hamilton, New Zealand
- Canadian High Arctic Research Station, Polar Knowledge Canada, Cambridge Bay, Nunavut, Canada
| | - S. Craig Cary
- Te Aka Mātuatua - School of Science, Te Whare Wānanga o Waikato - University of Waikato, Hamilton, New Zealand
- International Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand
| | - Ian R. McDonald
- Te Aka Mātuatua - School of Science, Te Whare Wānanga o Waikato - University of Waikato, Hamilton, New Zealand
- International Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand
| | - Brent J. Sinclair
- Department of Biology, University of Western Ontario, London, ON, Canada
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7
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Andújar C, Arribas P, López H, Arjona Y, Pérez-Delgado A, Oromí P, Vogler AP, Emerson BC. Community assembly and metaphylogeography of soil biodiversity: insights from haplotype-level community DNA metabarcoding within an oceanic island. Mol Ecol 2022; 31:4078-4094. [PMID: 35665980 PMCID: PMC9544582 DOI: 10.1111/mec.16560] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 05/04/2022] [Accepted: 05/24/2022] [Indexed: 11/26/2022]
Abstract
Most of our understanding of island diversity comes from the study of aboveground systems, while the patterns and processes of diversification and community assembly for belowground biotas remain poorly understood. Here, we take advantage of a relatively young and dynamic oceanic island to advance our understanding of ecoevolutionary processes driving community assembly within soil mesofauna. Using whole organism community DNA (wocDNA) metabarcoding and the recently developed metaMATE pipeline, we have generated spatially explicit and reliable haplotype‐level DNA sequence data for soil mesofaunal assemblages sampled across the four main habitats within the island of Tenerife. Community ecological and metaphylogeographic analyses have been performed at multiple levels of genetic similarity, from haplotypes to species and supraspecific groupings. Broadly consistent patterns of local‐scale species richness across different insular habitats have been found, whereas local insular richness is lower than in continental settings. Our results reveal an important role for niche conservatism as a driver of insular community assembly of soil mesofauna, with only limited evidence for habitat shifts promoting diversification. Furthermore, support is found for a fundamental role of habitat in the assembly of soil mesofauna, where habitat specialism is mainly due to colonization and the establishment of preadapted species. Hierarchical patterns of distance decay at the community level and metaphylogeographical analyses support a pattern of geographic structuring over limited spatial scales, from the level of haplotypes through to species and lineages, as expected for taxa with strong dispersal limitations. Our results demonstrate the potential for wocDNA metabarcoding to advance our understanding of biodiversity.
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Affiliation(s)
- Carmelo Andújar
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain
| | - Paula Arribas
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain
| | - Heriberto López
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain
| | - Yurena Arjona
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain
| | - Antonio Pérez-Delgado
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain.,School of Doctoral and Postgraduate Studies, University of La Laguna, La Laguna Tenerife, Canary Islands, Spain
| | - Pedro Oromí
- Department of Animal Biology, Edaphology and Geology, University of La Laguna, La Laguna Tenerife, Canary Islands, Spain
| | - Alfried P Vogler
- Department of Life Sciences, Natural History Museum, Cromwell Road, London, UK.,Department of Life Sciences, Imperial College London Silwood Park Campus, Ascot, UK
| | - Brent C Emerson
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna Tenerife, Canary Islands, Spain
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8
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Ross GM, Berg MP, Salmon S, Nielsen UN. Phylogenies of traits and functions in soil invertebrate assemblages. AUSTRAL ECOL 2022. [DOI: 10.1111/aec.13153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Giles M. Ross
- Hawkesbury Institute for the Environment Western Sydney University Locked Bag 1797 Penrith NSW 2751 Australia
| | - Matty P. Berg
- Department of Ecological Science Vrije Universiteit Amsterdam, De Boelelaan 1085 Amsterdam HV 1081 The Netherlands
- Community and Conservation Ecology Group, Groningen Institute for Evolutionary Life Sciences University of Groningen Nijenborgh 7 Groningen AG 9747 The Netherlands
| | - Sandrine Salmon
- Department of Living Adaptations UMR 7179 MECADEV, Muséum National d'Histoire Naturelle 1 Avenue du Petit Château, Brunoy Paris 91800 France
| | - Uffe N. Nielsen
- Hawkesbury Institute for the Environment Western Sydney University Locked Bag 1797 Penrith NSW 2751 Australia
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9
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Stevens MI, Greenslade P, D’Haese CA. Species diversity in
Friesea
(Neanuridae) reveals similar biogeographic patterns among Antarctic Collembola. ZOOL SCR 2021. [DOI: 10.1111/zsc.12490] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Mark I. Stevens
- Biological and Earth Sciences South Australian Museum Adelaide SA Australia
- School of Biological Sciences University of Adelaide Adelaide SA Australia
| | - Penelope Greenslade
- Environmental Management School of Science, Psychology and Sport Federation University Ballarat VIC Australia
- School of Biology Australian National University Canberra ACT Australia
| | - Cyrille A. D’Haese
- MECADEV UMR 7179 CNRS MNHN Muséum national d'Histoire naturelle Paris France
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10
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Leo C, Nardi F, Cucini C, Frati F, Convey P, Weedon JT, Roelofs D, Carapelli A. Evidence for strong environmental control on bacterial microbiomes of Antarctic springtails. Sci Rep 2021; 11:2973. [PMID: 33536493 PMCID: PMC7858589 DOI: 10.1038/s41598-021-82379-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Accepted: 01/13/2021] [Indexed: 01/04/2023] Open
Abstract
Collembola are a key component of the soil biota globally, playing an important role in community and ecosystem dynamics. Equally significant are their associated microbiomes, that can contribute to key metabolic functions. In the present study, we investigated the bacterial community composition of four Antarctic springtail species to assess if and how the extreme Antarctic environment has shaped the collembolans’ microbiomes. Springtails were collected from two biogeographical regions, the maritime and the continental Antarctic. From each region, two endemic species, belonging to the genera Cryptopygus (Isotomidae, Entomobryomorpha) and Friesea (Neanuridae, Poduromorpha), were included. This experimental design allowed us to quantify the relative importance of ecological factors (different regions of occurrence) and/or phylogenetic divergence in the host (different Orders) in shaping the Collembola microbiome. The diversity and richness of springtail microbiomes was lower in the Antarctic taxa compared to published information from species from temperate regions. The microbiome composition was predominantly species-specific, with a limited core microbiome shared across the four species examined. While both geographic origin and host species influenced the associated microbiomes, the former was the prevalent driver, with closer similarity between springtails from the same bioregion than between those belonging to the same genus.
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Affiliation(s)
- Chiara Leo
- Life Science Department, University of Siena, Via Aldo Moro 2, 53100, Siena, Italy. .,Department of Life Sciences, Imperial College London, London, UK.
| | - Francesco Nardi
- Life Science Department, University of Siena, Via Aldo Moro 2, 53100, Siena, Italy
| | - Claudio Cucini
- Life Science Department, University of Siena, Via Aldo Moro 2, 53100, Siena, Italy
| | - Francesco Frati
- Life Science Department, University of Siena, Via Aldo Moro 2, 53100, Siena, Italy
| | - Peter Convey
- British Antarctic Survey, Natural Environment Research Council, High Cross, Madingley Road, Cambridge, CB3 0ET, UK
| | - James T Weedon
- Department of Ecological Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands
| | - Dick Roelofs
- Keygene N.V., Agro Business Park 90, 6708 PW, Wageningen, The Netherlands
| | - Antonio Carapelli
- Life Science Department, University of Siena, Via Aldo Moro 2, 53100, Siena, Italy
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11
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Arribas P, Andújar C, Salces-Castellano A, Emerson BC, Vogler AP. The limited spatial scale of dispersal in soil arthropods revealed with whole-community haplotype-level metabarcoding. Mol Ecol 2020; 30:48-61. [PMID: 32772446 DOI: 10.1111/mec.15591] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 07/27/2020] [Accepted: 07/31/2020] [Indexed: 01/04/2023]
Abstract
Soil arthropod communities are highly diverse and critical for ecosystem functioning. However, our knowledge of spatial structure and the underlying processes of community assembly are scarce, hampered by limited empirical data on species diversity and turnover. We implement a high-throughput sequencing approach to generate comparative data for thousands of arthropods at three hierarchical levels: genetic, species and supra-specific lineages. A joint analysis of the spatial arrangement across these levels can reveal the predominant processes driving the variation in biological assemblages at the local scale. This multihierarchical approach was performed using haplotype-level COI metabarcoding of entire communities of mites, springtails and beetles from three Iberian mountain regions. Tens of thousands of specimens were extracted from deep and superficial soil layers and produced comparative phylogeographic data for >1,000 codistributed species and nearly 3,000 haplotypes. Local assemblage composition differed greatly between grasslands and forests and, within each habitat, showed strong spatial structure and high endemicity. Distance decay was high at all levels, even at the scale of a few kilometres or less. The local distance decay patterns were self-similar for the haplotypes and higher hierarchical entities, and this fractal structure was similar in all regions, suggesting that uniform processes of limited dispersal determine local-scale community assembly. Our results from whole-community metabarcoding provide insight into how dispersal limitations constrain mesofauna community structure within local spatial settings over evolutionary timescales. If generalized across wider areas, the high turnover and endemicity in the soil locally may indicate extremely high richness globally, challenging our current estimations of total arthropod diversity on Earth.
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Affiliation(s)
- Paula Arribas
- Island Ecology and Evolution Research Group (IPNA-CSIC), La Laguna, Spain.,Department of Life Sciences, Natural History Museum, London, UK.,Department of Life Sciences, Imperial College London, Ascot, UK
| | - Carmelo Andújar
- Island Ecology and Evolution Research Group (IPNA-CSIC), La Laguna, Spain.,Department of Life Sciences, Natural History Museum, London, UK.,Department of Life Sciences, Imperial College London, Ascot, UK
| | | | - Brent C Emerson
- Island Ecology and Evolution Research Group (IPNA-CSIC), La Laguna, Spain
| | - Alfried P Vogler
- Department of Life Sciences, Natural History Museum, London, UK.,Department of Life Sciences, Imperial College London, Ascot, UK
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Genetic diversity of soil invertebrates corroborates timing estimates for past collapses of the West Antarctic Ice Sheet. Proc Natl Acad Sci U S A 2020; 117:22293-22302. [PMID: 32839321 PMCID: PMC7486705 DOI: 10.1073/pnas.2007925117] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Abstract
Changes in the extent of ice sheets through evolutionary timescales have influenced the connectivity of soil invertebrate populations across the Antarctic landscape. We use genetic divergences to estimate isolation times for soil invertebrates along the Transantarctic Mountains. Four species of Collembola (Arthropoda) each showed genetically distinct populations at locations likely isolated for millions of years. Two further species were less genetically diverse although also range restricted. Our genetic data corroborate climate reconstructions and estimates of past warm periods of reduced ice and absent ice shelf in the Ross Sea region, during which time open seaways would have facilitated dispersal of Collembola, and possibly other taxa. During austral summer field seasons between 1999 and 2018, we sampled at 91 locations throughout southern Victoria Land and along the Transantarctic Mountains for six species of endemic microarthropods (Collembola), covering a latitudinal range from 76.0°S to 87.3°S. We assembled individual mitochondrial cytochrome c oxidase subunit 1 (COI) sequences (n = 866) and found high levels of sequence divergence at both small (<10 km) and large (>600 km) spatial scales for four of the six Collembola species. We applied molecular clock estimates and assessed genetic divergences relative to the timing of past glacial cycles, including collapses of the West Antarctic Ice Sheet (WAIS). We found that genetically distinct lineages within three species have likely been isolated for at least 5.54 My to 3.52 My, while the other three species diverged more recently (<2 My). We suggest that Collembola had greater dispersal opportunities under past warmer climates, via flotation along coastal margins. Similarly increased opportunities for dispersal may occur under contemporary climate warming scenarios, which could influence the genetic structure of extant populations. As Collembola are a living record of past landscape evolution within Antarctica, these findings provide biological evidence to support geological and glaciological estimates of historical WAIS dynamics over the last ca. 5 My.
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Carapelli A, Greenslade P, Nardi F, Leo C, Convey P, Frati F, Fanciulli PP. Evidence for Cryptic Diversity in the "Pan-Antarctic" Springtail Friesea antarctica and the Description of Two New Species. INSECTS 2020; 11:insects11030141. [PMID: 32106429 PMCID: PMC7143604 DOI: 10.3390/insects11030141] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 02/18/2020] [Accepted: 02/20/2020] [Indexed: 02/05/2023]
Abstract
The invertebrate terrestrial fauna of Antarctica is being investigated with increasing interest to discover how life interacts with the extreme polar environment and how millions of years of evolution have shaped their biodiversity. Classical taxonomic approaches, complemented by molecular tools, are improving our understanding of the systematic relationships of some species, changing the nomenclature of taxa and challenging the taxonomic status of others. The springtail Friesea grisea has previously been described as the only species with a “pan-Antarctic” distribution. However, recent genetic comparisons have pointed to another scenario. The latest morphological study has confined F. grisea to the sub-Antarctic island of South Georgia, from which it was originally described, and resurrected F. antarctica as a congeneric species occurring on the continental mainland. Molecular data demonstrate that populations of this taxon, ostensibly occurring across Maritime and Continental Antarctica, as well as on some offshore islands, are evolutionarily isolated and divergent and cannot be included within a single species. The present study, combining morphological with molecular data, attempts to validate this hypothesis and challenges the taxonomic status of F. antarctica, suggesting that two additional new species, described here as Friesea gretae sp. nov. and Friesea propria sp. nov., are present in Continental Antarctica.
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Affiliation(s)
- Antonio Carapelli
- Department of Life Sciences, University of Siena, Via A. Moro 2, 53100 Siena, Italy; (F.N.); (C.L.); (F.F.); (P.P.F.)
- Correspondence: ; Tel.: +39-0577-234-410
| | - Penelope Greenslade
- Environmental Management, School of Health and Life Sciences, Federation University, Ballarat, VIC 3350, Australia;
| | - Francesco Nardi
- Department of Life Sciences, University of Siena, Via A. Moro 2, 53100 Siena, Italy; (F.N.); (C.L.); (F.F.); (P.P.F.)
| | - Chiara Leo
- Department of Life Sciences, University of Siena, Via A. Moro 2, 53100 Siena, Italy; (F.N.); (C.L.); (F.F.); (P.P.F.)
| | - Peter Convey
- British Antarctic Survey, NERC, High Cross, Madingley Road, Cambridge CB3 0ET, UK;
| | - Francesco Frati
- Department of Life Sciences, University of Siena, Via A. Moro 2, 53100 Siena, Italy; (F.N.); (C.L.); (F.F.); (P.P.F.)
| | - Pietro Paolo Fanciulli
- Department of Life Sciences, University of Siena, Via A. Moro 2, 53100 Siena, Italy; (F.N.); (C.L.); (F.F.); (P.P.F.)
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14
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Convey P, Peck LS. Antarctic environmental change and biological responses. SCIENCE ADVANCES 2019; 5:eaaz0888. [PMID: 31807713 PMCID: PMC6881164 DOI: 10.1126/sciadv.aaz0888] [Citation(s) in RCA: 117] [Impact Index Per Article: 23.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2019] [Accepted: 11/04/2019] [Indexed: 05/22/2023]
Abstract
Antarctica and the surrounding Southern Ocean are facing complex environmental change. Their native biota has adapted to the region's extreme conditions over many millions of years. This unique biota is now challenged by environmental change and the direct impacts of human activity. The terrestrial biota is characterized by considerable physiological and ecological flexibility and is expected to show increases in productivity, population sizes and ranges of individual species, and community complexity. However, the establishment of non-native organisms in both terrestrial and marine ecosystems may present an even greater threat than climate change itself. In the marine environment, much more limited response flexibility means that even small levels of warming are threatening. Changing sea ice has large impacts on ecosystem processes, while ocean acidification and coastal freshening are expected to have major impacts.
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McGaughran A, Terauds A, Convey P, Fraser CI. Genome‐wide SNP data reveal improved evidence for Antarctic glacial refugia and dispersal of terrestrial invertebrates. Mol Ecol 2019; 28:4941-4957. [DOI: 10.1111/mec.15269] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 09/19/2019] [Accepted: 09/25/2019] [Indexed: 01/05/2023]
Affiliation(s)
- Angela McGaughran
- Division of Ecology and Evolution Research School of Biology Australian National University Canberra ACT Australia
- Black Mountain Laboratories Commonwealth Scientific and Industrial Research Organisation Acton ACT Australia
| | - Aleks Terauds
- Department of Energy and the Environment Australian Antarctic Division Kingston Tas. Australia
- Fenner School of Environment and Society College of Science Australian National University Canberra ACT Australia
| | - Peter Convey
- British Antarctic Survey NERC, High Cross Cambridge UK
| | - Ceridwen I. Fraser
- Fenner School of Environment and Society College of Science Australian National University Canberra ACT Australia
- Department of Marine Science University of Otago Dunedin New Zealand
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