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For: Boyd ES, Hamilton TL, Wang J, He L, Zhang CL. The role of tetraether lipid composition in the adaptation of thermophilic archaea to acidity. Front Microbiol 2013;4:62. [PMID: 23565112 PMCID: PMC3615187 DOI: 10.3389/fmicb.2013.00062] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2013] [Accepted: 03/04/2013] [Indexed: 01/10/2023]  Open
Number Cited by Other Article(s)
1
Shih KC, Leriche G, Liu CH, He J, John VT, Fang J, Barker JG, Nagao M, Yang L, Yang J, Nieh MP. Antivesiculation and Complete Unbinding of Tail-Tethered Lipids. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024;40:1688-1697. [PMID: 38186288 DOI: 10.1021/acs.langmuir.3c02663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2024]
2
Zheng P, Yang H, Zhang H, Shen C, Sun H. Influence of hydrological parameters on hydroxylated tetraether lipids in a deep Lake Fuxian, China: Implications for their use as environmental proxies. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;895:165022. [PMID: 37348708 DOI: 10.1016/j.scitotenv.2023.165022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2023] [Revised: 05/22/2023] [Accepted: 06/18/2023] [Indexed: 06/24/2023]
3
Blum LN, Colman DR, Eloe-Fadrosh EA, Kellom M, Boyd ES, Zhaxybayeva O, Leavitt WD. Distribution and abundance of tetraether lipid cyclization genes in terrestrial hot springs reflect pH. Environ Microbiol 2023;25:1644-1658. [PMID: 37032561 DOI: 10.1111/1462-2920.16375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Accepted: 03/15/2023] [Indexed: 04/11/2023]
4
Weeks K, Trembath-Reichert E, Boyer G, Fecteau K, Howells A, De Martini F, Gile GH, Shock EL. Characterization of microbiomic and geochemical compositions across the photosynthetic fringe. Front Microbiol 2023;14:1176606. [PMID: 37187542 PMCID: PMC10178925 DOI: 10.3389/fmicb.2023.1176606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 04/12/2023] [Indexed: 05/17/2023]  Open
5
Upin HE, Newell DL, Colman DR, Boyd ES. Tectonic settings influence the geochemical and microbial diversity of Peru hot springs. COMMUNICATIONS EARTH & ENVIRONMENT 2023;4:112. [PMID: 38665187 PMCID: PMC11041657 DOI: 10.1038/s43247-023-00787-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 03/29/2023] [Indexed: 04/28/2024]
6
Finkel PL, Carrizo D, Parro V, Sánchez-García L. An Overview of Lipid Biomarkers in Terrestrial Extreme Environments with Relevance for Mars Exploration. ASTROBIOLOGY 2023;23:563-604. [PMID: 36880883 PMCID: PMC10150655 DOI: 10.1089/ast.2022.0083] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
7
Xu Z, Liu G, Gao L, Xu D, Wan H, Dai X, Zhang X, Tao L, Yan LT. Configurational Entropy-Enabled Thermostability of Cell Membranes in Extremophiles: From Molecular Mechanism to Bioinspired Design. NANO LETTERS 2023;23:1109-1118. [PMID: 36716197 DOI: 10.1021/acs.nanolett.2c04939] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
8
Carr S, Buan NR. Insights into the biotechnology potential of Methanosarcina. Front Microbiol 2022;13:1034674. [PMID: 36590411 PMCID: PMC9797515 DOI: 10.3389/fmicb.2022.1034674] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 10/28/2022] [Indexed: 12/23/2022]  Open
9
de la Higuera I, Lázaro E. Viruses in astrobiology. Front Microbiol 2022;13:1032918. [PMID: 36386652 PMCID: PMC9643867 DOI: 10.3389/fmicb.2022.1032918] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Accepted: 10/10/2022] [Indexed: 11/24/2022]  Open
10
de Kok NAW, Driessen AJM. The catalytic and structural basis of archaeal glycerophospholipid biosynthesis. Extremophiles 2022;26:29. [PMID: 35976526 PMCID: PMC9385802 DOI: 10.1007/s00792-022-01277-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Accepted: 08/02/2022] [Indexed: 12/03/2022]
11
Archaeal lipids trace ecology and evolution of marine ammonia-oxidizing archaea. Proc Natl Acad Sci U S A 2022;119:e2123193119. [PMID: 35905325 PMCID: PMC9351445 DOI: 10.1073/pnas.2123193119] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]  Open
12
Spietz RL, Payne D, Kulkarni G, Metcalf WW, Roden EE, Boyd ES. Investigating Abiotic and Biotic Mechanisms of Pyrite Reduction. Front Microbiol 2022;13:878387. [PMID: 35615515 PMCID: PMC9124975 DOI: 10.3389/fmicb.2022.878387] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 03/31/2022] [Indexed: 11/16/2022]  Open
13
Tourte M, Schaeffer P, Grossi V, Oger PM. Membrane adaptation in the hyperthermophilic archaeon Pyrococcus furiosus relies upon a novel strategy involving glycerol monoalkyl glycerol tetraether lipids. Environ Microbiol 2022;24:2029-2046. [PMID: 35106897 DOI: 10.1111/1462-2920.15923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2021] [Revised: 01/21/2022] [Accepted: 01/24/2022] [Indexed: 11/28/2022]
14
Sánchez SV, Navarro N, Catalán-Figueroa J, Morales JO. Nanoparticles as Potential Novel Therapies for Urinary Tract Infections. Front Cell Infect Microbiol 2021;11:656496. [PMID: 33954121 PMCID: PMC8089393 DOI: 10.3389/fcimb.2021.656496] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Accepted: 03/23/2021] [Indexed: 12/21/2022]  Open
15
Tourte M, Schaeffer P, Grossi V, Oger PM. Functionalized Membrane Domains: An Ancestral Feature of Archaea? Front Microbiol 2020;11:526. [PMID: 32296409 PMCID: PMC7137397 DOI: 10.3389/fmicb.2020.00526] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Accepted: 03/11/2020] [Indexed: 01/06/2023]  Open
16
Boyer GM, Schubotz F, Summons RE, Woods J, Shock EL. Carbon Oxidation State in Microbial Polar Lipids Suggests Adaptation to Hot Spring Temperature and Redox Gradients. Front Microbiol 2020;11:229. [PMID: 32153529 PMCID: PMC7044123 DOI: 10.3389/fmicb.2020.00229] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2019] [Accepted: 01/31/2020] [Indexed: 12/18/2022]  Open
17
Colman DR, Lindsay MR, Amenabar MJ, Boyd ES. The Intersection of Geology, Geochemistry, and Microbiology in Continental Hydrothermal Systems. ASTROBIOLOGY 2019;19:1505-1522. [PMID: 31592688 DOI: 10.1089/ast.2018.2016] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
18
Zhou A, Weber Y, Chiu BK, Elling FJ, Cobban AB, Pearson A, Leavitt WD. Energy flux controls tetraether lipid cyclization in Sulfolobus acidocaldarius. Environ Microbiol 2019;22:343-353. [PMID: 31696620 DOI: 10.1111/1462-2920.14851] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2019] [Revised: 10/16/2019] [Accepted: 10/22/2019] [Indexed: 12/31/2022]
19
Hartman R, Eilers BJ, Bollschweiler D, Munson-McGee JH, Engelhardt H, Young MJ, Lawrence CM. The Molecular Mechanism of Cellular Attachment for an Archaeal Virus. Structure 2019;27:1634-1646.e3. [PMID: 31587916 DOI: 10.1016/j.str.2019.09.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Revised: 08/21/2019] [Accepted: 09/16/2019] [Indexed: 12/17/2022]
20
Survey of high-resolution archaeal virus structures. Curr Opin Virol 2019;36:74-83. [PMID: 31238245 DOI: 10.1016/j.coviro.2019.05.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Revised: 04/30/2019] [Accepted: 05/09/2019] [Indexed: 01/21/2023]
21
Kim YH, Leriche G, Diraviyam K, Koyanagi T, Gao K, Onofrei D, Patterson J, Guha A, Gianneschi N, Holland GP, Gilson MK, Mayer M, Sept D, Yang J. Entropic effects enable life at extreme temperatures. SCIENCE ADVANCES 2019;5:eaaw4783. [PMID: 31049402 PMCID: PMC6494508 DOI: 10.1126/sciadv.aaw4783] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2018] [Accepted: 03/14/2019] [Indexed: 06/09/2023]
22
Colman DR, Lindsay MR, Boyd ES. Mixing of meteoric and geothermal fluids supports hyperdiverse chemosynthetic hydrothermal communities. Nat Commun 2019;10:681. [PMID: 30737379 PMCID: PMC6368606 DOI: 10.1038/s41467-019-08499-1] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Accepted: 01/15/2019] [Indexed: 12/28/2022]  Open
23
Belin BJ, Busset N, Giraud E, Molinaro A, Silipo A, Newman DK. Hopanoid lipids: from membranes to plant-bacteria interactions. Nat Rev Microbiol 2018;16:304-315. [PMID: 29456243 PMCID: PMC6087623 DOI: 10.1038/nrmicro.2017.173] [Citation(s) in RCA: 96] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
24
Sollich M, Yoshinaga MY, Häusler S, Price RE, Hinrichs KU, Bühring SI. Heat Stress Dictates Microbial Lipid Composition along a Thermal Gradient in Marine Sediments. Front Microbiol 2017;8:1550. [PMID: 28878741 PMCID: PMC5572230 DOI: 10.3389/fmicb.2017.01550] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2017] [Accepted: 07/31/2017] [Indexed: 12/17/2022]  Open
25
Valdebenito-Rolack E, Ruiz-Tagle N, Abarzúa L, Aroca G, Urrutia H. Characterization of a hyperthermophilic sulphur-oxidizing biofilm produced by archaea isolated from a hot spring. ELECTRON J BIOTECHN 2017. [DOI: 10.1016/j.ejbt.2016.11.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]  Open
26
Jiang X, Takacs-Vesbach CD. Microbial community analysis of pH 4 thermal springs in Yellowstone National Park. Extremophiles 2016;21:135-152. [PMID: 27807621 DOI: 10.1007/s00792-016-0889-8] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2016] [Accepted: 10/20/2016] [Indexed: 02/01/2023]
27
Feyhl-Buska J, Chen Y, Jia C, Wang JX, Zhang CL, Boyd ES. Influence of Growth Phase, pH, and Temperature on the Abundance and Composition of Tetraether Lipids in the Thermoacidophile Picrophilus torridus. Front Microbiol 2016;7:1323. [PMID: 27625636 PMCID: PMC5003844 DOI: 10.3389/fmicb.2016.01323] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Accepted: 08/10/2016] [Indexed: 11/13/2022]  Open
28
Colman DR, Feyhl-Buska J, Robinson KJ, Fecteau KM, Xu H, Shock EL, Boyd ES. Ecological differentiation in planktonic and sediment-associated chemotrophic microbial populations in Yellowstone hot springs. FEMS Microbiol Ecol 2016;92:fiw137. [PMID: 27306555 DOI: 10.1093/femsec/fiw137] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/12/2016] [Indexed: 01/29/2023]  Open
29
Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon "Candidatus Nitrosotalea devanaterra". Appl Environ Microbiol 2016;82:2608-2619. [PMID: 26896134 PMCID: PMC4836417 DOI: 10.1128/aem.04031-15] [Citation(s) in RCA: 72] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2015] [Accepted: 02/13/2016] [Indexed: 01/11/2023]  Open
30
Macqueen DJ, Gubry-Rangin C. Molecular adaptation of ammonia monooxygenase during independent pH specialization in Thaumarchaeota. Mol Ecol 2016;25:1986-99. [DOI: 10.1111/mec.13607] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2015] [Revised: 02/24/2016] [Accepted: 03/02/2016] [Indexed: 11/29/2022]
31
Urschel MR, Hamilton TL, Roden EE, Boyd ES. Substrate preference, uptake kinetics and bioenergetics in a facultatively autotrophic, thermoacidophilic crenarchaeote. FEMS Microbiol Ecol 2016;92:fiw069. [PMID: 27037359 DOI: 10.1093/femsec/fiw069] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/28/2016] [Indexed: 11/12/2022]  Open
32
Chugunov AO, Volynsky PE, Krylov NA, Boldyrev IA, Efremov RG. Liquid but durable: molecular dynamics simulations explain the unique properties of archaeal-like membranes. Sci Rep 2014;4:7462. [PMID: 25501042 PMCID: PMC4264030 DOI: 10.1038/srep07462] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2014] [Accepted: 11/24/2014] [Indexed: 12/12/2022]  Open
33
Xie W, Zhang CL, Wang J, Chen Y, Zhu Y, de la Torre JR, Dong H, Hartnett HE, Hedlund BP, Klotz MG. Distribution of ether lipids and composition of the archaeal community in terrestrial geothermal springs: impact of environmental variables. Environ Microbiol 2014;17:1600-14. [PMID: 25142282 DOI: 10.1111/1462-2920.12595] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2014] [Accepted: 08/08/2014] [Indexed: 11/26/2022]
34
Alsop EB, Boyd ES, Raymond J. Merging metagenomics and geochemistry reveals environmental controls on biological diversity and evolution. BMC Ecol 2014;14:16. [PMID: 24886397 PMCID: PMC4047435 DOI: 10.1186/1472-6785-14-16] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2014] [Accepted: 05/16/2014] [Indexed: 11/13/2022]  Open
35
Competition for ammonia influences the structure of chemotrophic communities in geothermal springs. Appl Environ Microbiol 2013;80:653-61. [PMID: 24242238 DOI: 10.1128/aem.02577-13] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
36
Wu W, Zhang CL, Wang H, He L, Li W, Dong H. Impacts of temperature and pH on the distribution of archaeal lipids in Yunnan hot springs, China. Front Microbiol 2013;4:312. [PMID: 24194734 PMCID: PMC3812992 DOI: 10.3389/fmicb.2013.00312] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2013] [Accepted: 09/28/2013] [Indexed: 11/13/2022]  Open
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