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Hao Z, Wang Q, Wang J, Deng Y, Yan Z, Tian L, Jiang H. Water Level Fluctuations Modulate the Microbiomes Involved in Biogeochemical Cycling in Floodplains. MICROBIAL ECOLOGY 2023; 87:24. [PMID: 38159125 DOI: 10.1007/s00248-023-02331-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Accepted: 12/08/2023] [Indexed: 01/03/2024]
Abstract
Drastic changes in hydrological conditions within floodplain ecosystems create distinct microbial habitats. However, there remains a lack of exploration regarding the variations in microbial function potentials across the flooding and drought seasons. In this study, metagenomics and environmental analyses were employed in floodplains that experience hydrological variations across four seasons. Analysis of functional gene composition, encompassing nitrogen, carbon, and sulfur metabolisms, revealed apparent differences between the flooding and drought seasons. The primary environmental drivers identified were water level, overlying water depth, submergence time, and temperature. Specific modules, e.g., the hydrolysis of β-1,4-glucosidic bond, denitrification, and dissimilatory/assimilatory nitrate reduction to ammonium, exhibited higher relative abundance in summer compared to winter. It is suggested that cellulose degradation was potentially coupled with nitrate reduction during the flooding season. Phylogenomic analysis of metagenome-assembled genomes (MAGs) unveiled that the Desulfobacterota lineage possessed abundant nitrogen metabolism genes supported by pathway reconstruction. Variation of relative abundance implied its environmental adaptability to both the wet and dry seasons. Furthermore, a novel order was found within Methylomirabilota, containing nitrogen reduction genes in the MAG. Overall, this study highlights the crucial role of hydrological factors in modulating microbial functional diversity and generating genomes with abundant nitrogen metabolism potentials.
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Affiliation(s)
- Zheng Hao
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, 73 East Beijing Road, Nanjing, 210008, China
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Qianhong Wang
- Changjiang Nanjing Waterway Engineering Bureau, Nanjing, 210011, China
| | - Jianjun Wang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, 73 East Beijing Road, Nanjing, 210008, China
| | - Ye Deng
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Zaisheng Yan
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, 73 East Beijing Road, Nanjing, 210008, China
| | - Linqi Tian
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, 73 East Beijing Road, Nanjing, 210008, China
| | - Helong Jiang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, 73 East Beijing Road, Nanjing, 210008, China.
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Zheng X, Yan Z, Zhao C, He L, Lin Z, Liu M. Homogeneous environmental selection mainly determines the denitrifying bacterial community in intensive aquaculture water. Front Microbiol 2023; 14:1280450. [PMID: 38029183 PMCID: PMC10653326 DOI: 10.3389/fmicb.2023.1280450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 10/18/2023] [Indexed: 12/01/2023] Open
Abstract
Nitrate reduction by napA (encodes periplasmic nitrate reductase) bacteria and nitrous oxide reduction by nosZ (encodes nitrous oxide reductase) bacteria play important roles in nitrogen cycling and removal in intensive aquaculture systems. This study investigated the diversity, dynamics, drivers, and assembly mechanisms of total bacteria as well as napA and nosZ denitrifiers in intensive shrimp aquaculture ponds over a 100-day period. Alpha diversity of the total bacterial community increased significantly over time. In contrast, the alpha diversity of napA and nosZ bacteria remained relatively stable throughout the aquaculture process. The community structure changed markedly across all groups over the culture period. Total nitrogen, phosphate, total phosphorus, and silicate were identified as significant drivers of the denitrifying bacterial communities. Network analysis revealed complex co-occurrence patterns between total, napA, and nosZ bacteria which fluctuated over time. A null model approach showed that, unlike the total community dominated by stochastic factors, napA and nosZ bacteria were primarily governed by deterministic processes. The level of determinism increased with nutrient loading, suggesting the denitrifying community can be manipulated by bioaugmentation. The dominant genus Ruegeria may be a promising candidate for introducing targeted denitrifiers into aquaculture systems to improve nitrogen removal. Overall, this study provides important ecological insights into aerobic and nitrous oxide-reducing denitrifiers in intensive aquaculture, supporting strategies to optimize microbial community structure and function.
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Affiliation(s)
- Xiafei Zheng
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
| | - Zhongneng Yan
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
| | - Chenxi Zhao
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
| | - Lin He
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
| | - Zhihua Lin
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
| | - Minhai Liu
- Ninghai Institute of Mariculture Breeding and Seed Industry, Zhejiang Wanli University, Ningbo, China
- Zhejiang Key Laboratory of Aquatic Germplasm Resource, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China
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3
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Huidobro-López B, León C, López-Heras I, Martínez-Hernández V, Nozal L, Crego AL, de Bustamante I. Untargeted metabolomic analysis to explore the impact of soil amendments in a non-conventional wastewater treatment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 870:161890. [PMID: 36731565 DOI: 10.1016/j.scitotenv.2023.161890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 01/24/2023] [Accepted: 01/25/2023] [Indexed: 06/18/2023]
Abstract
As non-conventional wastewater treatment, vegetation filters make the most of the natural attenuation processes that occur in soil to remove contaminants, while providing several environmental benefits. However, this practice may introduce contaminants of emerging concern (CECs) and their transformation products (TPs) into the environment. A potential improvement to the system was tested using column experiments containing soil (S) and soil amended with woodchips (SW) or biochar (SB) irrigated with synthetic wastewater that included 11 selected CECs. This study evaluated: i) known CECs attenuation and ii) unknown metabolites formation. Known CECs attenuation was assessed by total mass balance by considering both water and soil media. An untargeted metabolomic strategy was developed to assess the formation of unknown metabolites and to identify them in water samples. The results indicated that SB enhanced CECs attenuation and led to the formation of fewer metabolites. Sorption and biodegradation processes were favored by the bigger surface area of particles in SB column, especially for compounds with negative charges. Incorporating woodchips into soil shortened retention times in the column, which reduced attenuation phenomena and resulted in the formation of significantly more metabolites. Incomplete biodegradation reactions, fostered by shorter retention times in SW column could mainly explain these results.
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Affiliation(s)
- Blanca Huidobro-López
- IMDEA Water, Avenida Punto Com 2, E-28805 Madrid, Spain; Alcalá University, Department of Analytical Chemistry, Physical Chemistry and Chemical Engineering, E-28871 Madrid, Spain.
| | - Carlos León
- Carlos III University, Department of Bioengineering, E-28911 Madrid, Spain
| | | | | | - Leonor Nozal
- Alcalá University and General Foundation of Alcalá University, Center of Applied Chemistry and Biotechnology, E-28871 Madrid, Spain
| | - Antonio L Crego
- Alcalá University, Department of Analytical Chemistry, Physical Chemistry and Chemical Engineering, E-28871 Madrid, Spain.
| | - Irene de Bustamante
- IMDEA Water, Avenida Punto Com 2, E-28805 Madrid, Spain; Alcalá University, Department of Geology, Geography and Environment, E-28871 Madrid, Spain
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Tanmoy DS, Bezares-Cruz JC, LeFevre GH. The use of recycled materials in a biofilter to polish anammox wastewater treatment plant effluent. CHEMOSPHERE 2022; 296:134058. [PMID: 35192854 DOI: 10.1016/j.chemosphere.2022.134058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Revised: 02/16/2022] [Accepted: 02/18/2022] [Indexed: 06/14/2023]
Abstract
Anammox is gaining popularity for treating wastewater containing high-strength ammonia due to lower energy demand compared to conventional nitrification-denitrification processes; however, anammox is reported to increase nitrate loads in the effluent. The objective of this study was to assess the applicability of recycled materials [recycled concrete aggregate (RCA) and rice husks (RH)] as a polishing step to improve anammox reactor effluent quality. Anammox effluents were separately passed through two single-stage columns containing RCA and RH, and one two-stage column (50% RCA, 50% RH) to quantify total N, ammonia, nitrate, nitrite, and phosphate removal efficiencies. Langmuir isotherm experiments were conducted to quantify nitrate, nitrite, and phosphate sorption capacities in the columns. The RCA column exhibited the highest phosphate sorption capacity (0.074 mg/g), while the RH column exhibited higher nitrite and nitrate adsorption (0.063 mg/g and 0.023 mg/g respectively). We created a Hydrus-1D model to estimate pseudo-first-order reaction rates in the columns. Because RCA media can form metal-phosphate precipitates, the fastest phosphate reaction rate (1.58 min-1) occurred in the RCA column. The two-stage column demonstrated the greatest overall removals for all nutrients, and removal rates were consistent throughout the experimental period. The two-stage column achieved 15% total N, 94% ammonia-N, 38% nitrate-N, 75% nitrite-N, and 27% phosphate removal. The maximum nitrite, nitrate, and phosphate adsorption capacities in the two-stage column were 0.030 mg/g, 0.017 mg/g, and 0.014 mg/g respectively. This is the first study to demonstrate that recycled materials can successfully be integrated into a biofilter as an effluent polishing step to remove nutrients from anammox wastewater.
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Affiliation(s)
- Debojit S Tanmoy
- Department of Civil and Environmental Engineering, University of Iowa, 4105 Seamans Center, Iowa City, IA, 52242, United States; IIHR-Hydroscience and Engineering, University of Iowa, 100 C. Maxwell Stanley Hydraulics Laboratory, Iowa City, IA, 52242, United States; Department of Environmental Engineering, Texas A&M University-Kingsville, MSC 213, 925 W. Avenue B, Kingsville, TX, 78363, USA
| | - Juan C Bezares-Cruz
- Department of Environmental Engineering, Texas A&M University-Kingsville, MSC 213, 925 W. Avenue B, Kingsville, TX, 78363, USA
| | - Gregory H LeFevre
- Department of Civil and Environmental Engineering, University of Iowa, 4105 Seamans Center, Iowa City, IA, 52242, United States; IIHR-Hydroscience and Engineering, University of Iowa, 100 C. Maxwell Stanley Hydraulics Laboratory, Iowa City, IA, 52242, United States.
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5
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Shen C, Zhao Y, Li Y, Liu R, Wang J, Yang Y. Treating carbon-limited wastewater by DWTR and woodchip augmented floating constructed wetlands. CHEMOSPHERE 2021; 285:131331. [PMID: 34237501 DOI: 10.1016/j.chemosphere.2021.131331] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 06/06/2021] [Accepted: 06/23/2021] [Indexed: 06/13/2023]
Abstract
Floating constructed wetlands (FCWs) have attained tremendous popularity for water purification purposes. However, FCW functions establishment in nutrients removal from carbon-limited wastewater, especially in cold weather, is still a challenge. Here, two drinking water treatment residual (DWTR) based biocarriers (B-I: DWTR cakes, B-II: DWTR cakes combined with woodchips) have been augmented into FCW to enhance the nutrients (N and P) removal performance. Compared to the traditional FCW, the intensified FCWs simultaneously achieved higher N and P removal efficiencies, with average pollutants removal of 52.16 ± 11.51% for TN and 92.72 ± 1.61% for TP in FCW-I and 57.65 ± 9.43% for TN and 92.17 ± 2.55% for TP in FCW-II, respectively, while their removal in FCW-III of 27.74 ± 7.11% for TN and 17.91 ± 9.27% for TP. B-II performed best in overcoming the negative influence of low temperature in nutrients removal. Mass balance budget indicated that most P was enriched in DWTR based biocarriers. Thus it is feasible to recycle and recover P from the surface water. Furthermore, P in the sediment can be changed from active P to stable P, mitigating the internal P release risk. This study can help to expand the understanding of the intensified FCWs and promote the practical application of FCWs.
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Affiliation(s)
- Cheng Shen
- School of Environment and Natural Resources, Zhejiang University Science & Technology, Zhejiang Prov. Key Lab. of Recycling & Ecotreatment Waste, Hangzhou, 310000, Zhejiang, PR China; Dooge Centre for Water Resources Research, School of Civil Engineering, University College Dublin, Belfield, Dublin 4, Ireland.
| | - Yaqian Zhao
- State Key Laboratory of Eco-Hydraulics in Northwest Arid Region, Xi'an University of Technology, Xi'an, 710048, PR China.
| | - Yan Li
- Institute of Environment Resource and Soil Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310000, Zhejiang, PR China
| | - Ranbin Liu
- Dooge Centre for Water Resources Research, School of Civil Engineering, University College Dublin, Belfield, Dublin 4, Ireland; Sino-Dutch R&D Centre for Future Wastewater Treatment Technologies, Beijing Advanced Innovation Center of Future Urban Design, Beijing University of Civil Engineering & Architecture, Beijing, 100044, PR China
| | - Jie Wang
- School of Environment and Natural Resources, Zhejiang University Science & Technology, Zhejiang Prov. Key Lab. of Recycling & Ecotreatment Waste, Hangzhou, 310000, Zhejiang, PR China
| | - Yan Yang
- Dooge Centre for Water Resources Research, School of Civil Engineering, University College Dublin, Belfield, Dublin 4, Ireland
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Jéglot A, Sørensen SR, Schnorr KM, Plauborg F, Elsgaard L. Temperature Sensitivity and Composition of Nitrate-Reducing Microbiomes from a Full-Scale Woodchip Bioreactor Treating Agricultural Drainage Water. Microorganisms 2021; 9:1331. [PMID: 34207422 PMCID: PMC8235139 DOI: 10.3390/microorganisms9061331] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Revised: 06/15/2021] [Accepted: 06/17/2021] [Indexed: 02/06/2023] Open
Abstract
Denitrifying woodchip bioreactors (WBR), which aim to reduce nitrate (NO3-) pollution from agricultural drainage water, are less efficient when cold temperatures slow down the microbial transformation processes. Conducting bioaugmentation could potentially increase the NO3- removal efficiency during these specific periods. First, it is necessary to investigate denitrifying microbial populations in these facilities and understand their temperature responses. We hypothesized that seasonal changes and subsequent adaptations of microbial populations would allow for enrichment of cold-adapted denitrifying bacterial populations with potential use for bioaugmentation. Woodchip material was sampled from an operating WBR during spring, fall, and winter and used for enrichments of denitrifiers that were characterized by studies of metagenomics and temperature dependence of NO3- depletion. The successful enrichment of psychrotolerant denitrifiers was supported by the differences in temperature response, with the apparent domination of the phylum Proteobacteria and the genus Pseudomonas. The enrichments were found to have different microbiomes' composition and they mainly differed with native woodchip microbiomes by a lower abundance of the genus Flavobacterium. Overall, the performance and composition of the enriched denitrifying population from the WBR microbiome indicated a potential for efficient NO3- removal at cold temperatures that could be stimulated by the addition of selected cold-adapted denitrifying bacteria.
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Affiliation(s)
- Arnaud Jéglot
- Department of Agroecology, Aarhus University, Blichers Allé 20, 8830 Tjele, Denmark; (F.P.); (L.E.)
- WATEC Centre for Water Technology, Department of Agroecology, Aarhus University, Blichers Allé 20, 8830 Tjele, Denmark
| | | | - Kirk M. Schnorr
- Novozymes A/S, Biologiens Vej 2, 2800 Kongens Lyngby, Denmark; (S.R.S.); (K.M.S.)
| | - Finn Plauborg
- Department of Agroecology, Aarhus University, Blichers Allé 20, 8830 Tjele, Denmark; (F.P.); (L.E.)
- WATEC Centre for Water Technology, Department of Agroecology, Aarhus University, Blichers Allé 20, 8830 Tjele, Denmark
| | - Lars Elsgaard
- Department of Agroecology, Aarhus University, Blichers Allé 20, 8830 Tjele, Denmark; (F.P.); (L.E.)
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Hellman M, Hubalek V, Juhanson J, Almstrand R, Peura S, Hallin S. Substrate type determines microbial activity and community composition in bioreactors for nitrate removal by denitrification at low temperature. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 755:143023. [PMID: 33158531 DOI: 10.1016/j.scitotenv.2020.143023] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 10/08/2020] [Accepted: 10/08/2020] [Indexed: 06/11/2023]
Abstract
High levels of nitrogen originating from blasting operations, for example at mining sites or quarries, risk contaminating water bodies through leaching from waste rock dumps. Woodchip bioreactors can be a simple and cost-effective way of reducing nitrate concentrations in the leachate. In this study we investigated how bottle sedge, barley straw, and pine woodchips used as electron donors for denitrification influenced microbial community composition and nitrate removal in lab-scale bioreactors during 270 days. The reactors were operated to ensure that nitrate was never limiting and to achieve similar nitrate removal (%). Distinct bacterial communities developed due to the different substrates, as determined by sequencing of the 16S rRNA gene. Sedge and straw reactors shared more taxa with each other than with woodchips and throughout the experimental period, sedge and straw were more diverse than woodchips. Cellulose degrading bacteria like Fibrobacteres and Verrucomicrobia were detected in the substrates after 100-150 days of operation. Nitrate removal rates were highest in the sedge and straw reactors. After initial fluctuations, these reactors removed 5.1-6.3 g N m-3 water day-1, which was 3.3-4.4 times more than in the woodchip reactors. This corresponded to 48%, 42%, and 44% nitrate removal for the sedge, straw, and woodchip reactors respectively. The functional communities were characterized by quantitative PCR and denitrification was the major nitrate removing process based on genetic potential and water chemistry, although sedge and straw developed a capacity for ammonification. Gene ratios suggested that denitrification was initially incomplete and terminating with nitrous oxide. An increase in abundances of nitrous oxide reducing capacity in all substrate types towards the end increased the potential for less emissions of the greenhouse gas nitrous oxide.
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Affiliation(s)
- Maria Hellman
- Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, Box 7026, 75007 Uppsala, Sweden.
| | - Valerie Hubalek
- Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, Box 7026, 75007 Uppsala, Sweden.
| | - Jaanis Juhanson
- Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, Box 7026, 75007 Uppsala, Sweden.
| | - Robert Almstrand
- Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, Box 7026, 75007 Uppsala, Sweden.
| | - Sari Peura
- Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, Box 7026, 75007 Uppsala, Sweden.
| | - Sara Hallin
- Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, Box 7026, 75007 Uppsala, Sweden.
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Grießmeier V, Wienhöfer J, Horn H, Gescher J. Assessing and modeling biocatalysis in field denitrification beds reveals key influencing factors for future constructions. WATER RESEARCH 2021; 188:116467. [PMID: 33068909 DOI: 10.1016/j.watres.2020.116467] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2020] [Revised: 09/23/2020] [Accepted: 09/24/2020] [Indexed: 06/11/2023]
Abstract
Environmental contamination with fertilizers is threatening biodiversity in many ecosystems due to nitrate-based eutrophication. One opportunity for a cost-efficient nitrate elimination are denitrification beds in which a microbial community thrives under anoxic conditions with polymeric plant material as a carbon and an electron source. Incoming nitrate is used as electron acceptor and reduced to molecular nitrogen. Projects realizing denitrification beds in field scale are sparse and robust data on their efficiency throughout the year mostly not available. This study analyzed the nitrate elimination efficiency and microbiology of a 216 m3 denitrification bed over the time course of more than three years. Phylogenetic as well as transcriptomic analysis revealed that the reactor contained a biofilm community growing on the surface of the wood chips and a planktonic community. Both differed in composition but their variance was affected only to a minor extend by seasonal temperature changes. Cellulose degradation was mainly conducted by the biofilm population while denitrification was mostly conducted by the planktonic community. Methanogens were detectable only to a very minor extend. Using online data from the nitrate concentration of in- and outflowing water as well as a hydrological model to predict the water inflow, it was possible to establish a process model that sufficiently describes the denitrification process. This model clearly indicates that the denitrification efficiency is mostly impacted by temperature and hydraulic retention time. It also suggests that the simple design of the denitrification bed most likely leads to different flow paths through the reactor depending on the volumetric flow rate. This study allows for the first time a robust estimation of the necessary reactor size for nitrate removal in a moderate continental climate setting. It also suggests how future denitrification beds could be improved for better performance.
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Affiliation(s)
- Victoria Grießmeier
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Jan Wienhöfer
- Department Hydrology, Institute of Water and River Basin Management, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Harald Horn
- Department Water Chemistry and Water Technology, Engler-Bunte-Institut, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Johannes Gescher
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany; Institute for Biological Interfaces, Karlsruhe Institute of Technology (KIT), Eggenstein-Leopoldshafen, Germany.
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9
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Nordström A, Hellman M, Hallin S, Herbert RB. Microbial controls on net production of nitrous oxide in a denitrifying woodchip bioreactor. JOURNAL OF ENVIRONMENTAL QUALITY 2021; 50:228-240. [PMID: 33270921 DOI: 10.1002/jeq2.20181] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Accepted: 11/19/2020] [Indexed: 06/12/2023]
Abstract
Denitrifying woodchip bioreactors are potential low-cost technologies for the removal of nitrate (NO3 - ) in water through denitrification. However, if environmental conditions do not support microbial communities performing complete denitrification, other N transformation processes will occur, resulting in the export of nitrite (NO2 - ), nitrous oxide (N2 O), or ammonium (NH4 + ). To identify the factors controlling the relative accumulation of NO2 - , N2 O, and/or NH4 + in denitrifying woodchip bioreactors, porewater samples were collected over two operational years from a denitrifying woodchip bioreactor designed for removing NO3 - from mine water. Woodchip samples were collected at the end of the operational period. Changes in the abundances of functional genes involved in denitrification, N2 O reduction, and dissimilatory NO3 - reduction to NH4 + were correlated with porewater chemistry and temperature. Temporal changes in the abundance of the denitrification gene nirS were significantly correlated with increases in porewater N2 O concentrations and indicated the preferential selection of incomplete denitrifying pathways ending with N2 O. Temperature and the total organic carbon/NO3 - ratio were strongly correlated with NH4 + concentrations and inversely correlated with the ratio between denitrification genes and the genes indicative of ammonification (Σnir/nrfA), suggesting an environmental control on NO3 - transformations. Overall, our results for a denitrifying woodchip bioreactor operated at hydraulic residence times of 1.0-2.6 d demonstrate the temporal development in the microbial community and indicate an increased potential for N2 O emissions with time from the denitrifying woodchip bioreactor.
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Affiliation(s)
- Albin Nordström
- Dep. of Earth Sciences, Uppsala Univ., Villavägen 16, Uppsala, SE-752 36, Sweden
| | - Maria Hellman
- Dep. of Forest Mycology and Plant, Pathology, Swedish Univ. of Agricultural Sciences, Box 7026, Uppsala, SE-750 07, Sweden
| | - Sara Hallin
- Dep. of Forest Mycology and Plant, Pathology, Swedish Univ. of Agricultural Sciences, Box 7026, Uppsala, SE-750 07, Sweden
| | - Roger B Herbert
- Dep. of Earth Sciences, Uppsala Univ., Villavägen 16, Uppsala, SE-752 36, Sweden
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10
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Lu Q, Song Y, Mao G, Lin B, Wang Y, Gao G. Spatial variation in bacterial biomass, community composition and driving factors across a eutrophic river. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 205:111113. [PMID: 32836153 DOI: 10.1016/j.ecoenv.2020.111113] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2019] [Revised: 07/18/2020] [Accepted: 07/31/2020] [Indexed: 06/11/2023]
Abstract
Eutrophication is a global problem, and bacterial diversity and community composition are usually affected by eutrophication. However, limited information on the ecological significance of bacterial community during algae blooms of rivers has been given, more studies should be focused on the bacterial diversity and distribution characteristics in eutrophic rivers. In this study, we explored the spatial variations of bacterial biomass, community structure, and their relationship with environmental factors in the eutrophic Xiangxi River. The content of Chlorophyll (Chl) was about 16 mg/L in the midstream (S2, S3), which was in the range of light eutrophication. Significant spatial variation of bacterial community structure was found at different sites and depths (p < 0.05), and the driving environmental factor was found to be nitrogen, mainly detected as total nitrogen (TN), Kjeldahl nitrogen (KN), and ammonia nitrogen (NH4+) (p < 0.05). The midstream sites had some significantly different bacteria, including algicidal bacteria and dominant lineages during algal blooms. This result was consistent with the functional prediction, where significant higher abundance of Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways was associated with algicidal substances in the midstream. At different water depths, some populations adapted to the surface layer, such as the class Flavobacteriia, and others preferred to inhabit in the bottom layer, such as Betaproteobacteria and Acidobacteria. The bacterial biomass was higher in the bottom layer than that in the surface and middle layer, and temperature and pH were found to be the major driving factors. The bacterial diversity increased with the increasing of depths in most sampling sites according to operational taxonomic units (OTUs), Chao1 and ACE indexes, and PO43- was demonstrated to be the most significant factor. In summary, this study offered the evidence for microbial distribution characteristics across different sites and depths in summer, and its relationship with environmental variables in a eutrophic river.
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Affiliation(s)
- Qianqian Lu
- Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin, 300371, China
| | - Yuhao Song
- Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin, 300371, China
| | - Guannan Mao
- Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin, 300371, China
| | - Binliang Lin
- State Key Laboratory of Hydroscience and Engineering, Tsinghua University, China
| | - Yingying Wang
- Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin, 300371, China.
| | - Guanghai Gao
- Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin, 300371, China; State Key Laboratory of Hydroscience and Engineering, Tsinghua University, China.
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11
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Chik AHS, Emelko MB, Anderson WB, O'Sullivan KE, Savio D, Farnleitner AH, Blaschke AP, Schijven JF. Evaluation of groundwater bacterial community composition to inform waterborne pathogen vulnerability assessments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 743:140472. [PMID: 32758810 DOI: 10.1016/j.scitotenv.2020.140472] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Revised: 06/05/2020] [Accepted: 06/22/2020] [Indexed: 06/11/2023]
Abstract
Microbial water quality evaluations are essential for determining the vulnerability of subsurface drinking water sources to fecal pathogen intrusion. Rather than directly monitor waterborne pathogens using culture- or enumeration-based techniques, the potential of assessing bacterial community using 16S rRNA gene amplicon sequencing to support these evaluations was investigated. A framework for analyzing 16S rRNA gene amplicon sequencing results featuring negative-binomial generalized linear models is demonstrated, and applied to bacterial taxa sequences in purge water samples collected from a shallow, highly aerobic, unconfined aquifer. Bacterial taxa relevant as indicators of fecal source and surface connectivity were examined using this approach. Observed sequences of Escherichia, a genus suggestive of fecal source, were consistently detected but not confirmed by culture-based methods. On the other hand, episodic appearance of anaerobic taxa sequences in this highly aerobic environment, namely Clostridia and Bacteroides, warrants further investigation as potential indicators of fecal contamination. Betaproteobacteria sequences varied significantly on a seasonal basis, and therefore may be linked to understanding surface-water groundwater interactions at this site. However, sequences that are often encountered in surface water bodies (Cyanobacteria and Flavobacteriia) were notably absent or present at very low levels, suggesting that microbial transport from surface-derived sources may be rather limited. This work demonstrates the utility of 16S rRNA gene amplicon sequencing for contextualizing and complementing conventional microbial techniques, allowing for hypotheses about source and transport processes to be tested and refined.
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Affiliation(s)
- Alex H S Chik
- Utrecht University, Domplein 29, 3512 JE Utrecht, Netherlands; TU Wien, Karlsplatz 13, 1040 Vienna, Austria; University of Waterloo, 200 University Ave. W., Waterloo, Ontario N2L 3G1, Canada.
| | - Monica B Emelko
- University of Waterloo, 200 University Ave. W., Waterloo, Ontario N2L 3G1, Canada
| | - William B Anderson
- University of Waterloo, 200 University Ave. W., Waterloo, Ontario N2L 3G1, Canada
| | - Kaitlyn E O'Sullivan
- University of Waterloo, 200 University Ave. W., Waterloo, Ontario N2L 3G1, Canada
| | - Domenico Savio
- Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, 3500 Krems an der Donau, Austria; TU Wien, Gumpendorfer Straße 1a, 1060 Vienna, Austria.
| | - Andreas H Farnleitner
- Karl Landsteiner University of Health Sciences, Dr.-Karl-Dorrek-Straße 30, 3500 Krems an der Donau, Austria; TU Wien, Gumpendorfer Straße 1a, 1060 Vienna, Austria.
| | | | - Jack F Schijven
- Utrecht University, Domplein 29, 3512 JE Utrecht, Netherlands
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12
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Effect of Denitrifying Bacterial Biomass and Carbon Sources on Nitrate Removal. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2020. [DOI: 10.22207/jpam.14.4.19] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Denitrification based on immobilized microbial cellulose may offer an economical replacement for conventional treatment for nitrate removal. The environmental and bacterial biomass may influence the rate of biological denitrification processes. This study aimed to investigate the factors that affect denitrification rates, including carbon sources, pH, and bacterial inoculum. Different inoculum biomass of Pseudomonas aeruginosa and various carbon sources of glucose, sucrose, and cellulose with different concentrations were tested to assimilate 100 mg/L of KNO3 as nitrate source. Additionally, five additional inoculations, five different incubation time, and seven different pH levels were studied. The Pseudomonas aeruginosa isolates used different mineral media with three carbon sources, glucose, sucrose, and cellulose, with different concentrations at different rates to denitrify nitrate. The highest denitrification rate was with glucose after 18 hrs and was after 24 hrs when sucrose and cellulose were used, respectively. The bacterial biomass denitrification level was the highest, between 0.8% and 1% of OD600=1. Nitrate removal by Pseudomonas aeruginosa was the highest at pH 7, 8, and 9. This report suggests that when glucose is used as a carbon source, at neutral to alkaline pH, and 1% of denitrifying bacterial biomass, the highest level of biological denitrification process may be achieved.
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13
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Díaz-García C, Martínez-Sánchez JJ, Álvarez-Rogel J. Bioreactors for brine denitrification produced during polluted groundwater desalination in fertigation areas of SE Spain: batch assays for substrate selection. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:34388-34397. [PMID: 32557047 DOI: 10.1007/s11356-020-09567-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 06/01/2020] [Indexed: 06/11/2023]
Abstract
Increasing knowledge of nitrate removal using denitrifying bioreactors has illustrated the usefulness of this management practice for treating discharge water from agricultural land uses. The objective of this study was to assess the viability of almond shell, chopped carob, olive bone, and citrus woodchip as carbon media for denitrification of brine with high nitrate load (EC ≈ 20 dS m-1, NO3--N concentration ≈ 65-80 mg NO3--N L-1) in bioreactors. To the authors' knowledge, this is the first test of denitrifying brine using organic wastes as the carbon substrate, and the first use of these carbon media for that purpose. Nitrate removal efficiency and efficiency:cost ratio were considered. The results indicated that the best removal efficiency and cheapest cost were provided by citrus woodchip (3.02 ± 0.15 mg NO3--N m-3 d-1) at a cost of ≈ 6€ m-3, followed by almond shell (1.54 ± 0.20 mg NO3--N m-3 d-1) at a cost of ≈ 19€ m-3. Chopped carob and olive bone showed negligible nitrate removal in the brine; chopped carob generated acidic leachate with extremely high dissolved organic carbon, and olive bone resulted in a highly saline leachate. Of the four media tested, the results of this study indicated that citrus woodchip was the most suitable media for denitrification of the brine.
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Affiliation(s)
- Carolina Díaz-García
- Departamento de Ingeniería Agronómica, E.T.S. de Ingeniería Agronómica, Universidad Politécnica de Cartagena, Paseo Alfonso XIII, 48, Cartagena, 30203, Murcia, Spain.
| | - Juan J Martínez-Sánchez
- Departamento de Ingeniería Agronómica, E.T.S. de Ingeniería Agronómica, Universidad Politécnica de Cartagena, Paseo Alfonso XIII, 48, Cartagena, 30203, Murcia, Spain
| | - José Álvarez-Rogel
- Departamento de Ingeniería Agronómica, E.T.S. de Ingeniería Agronómica, Universidad Politécnica de Cartagena, Paseo Alfonso XIII, 48, Cartagena, 30203, Murcia, Spain
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14
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Lu S, Sun Y, Lu B, Zheng D, Xu S. Change of abundance and correlation of Nitrospira inopinata-like comammox and populations in nitrogen cycle during different seasons. CHEMOSPHERE 2020; 241:125098. [PMID: 31877618 DOI: 10.1016/j.chemosphere.2019.125098] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Revised: 07/25/2019] [Accepted: 10/09/2019] [Indexed: 06/10/2023]
Abstract
Complete-nitrifying bacteria (comammox) play important roles in nitrogen-overloading aquatic systems. However, the understanding of the environmental relevance is still limited. Here, we studied the responses of comammox bacteria (Nitrospira inopinata) in a tributary of the Yellow River, with the water and sediment, microbial, seasonal, and chemical variations considered. Illumina sequencing indicated that the predominant phyla in the river sediment were Proterobacteria, Bacteroidetes, Actinobacteria, and Chloroflex. Quantitative PCR revealed that N. inopinata-like comammox were approximately twice as abundant in the water during the wet season and in the sediment during the dry season than that of other conditions. Significant correlations were found between the abundance of N. inopinata-like comammox and pH (r = 0.58), temperature (r = 0.63), and dissolved oxygen (r = - 0.77). The abundance of N. inopinata-like comammox was higher than that of ammonia oxidizing archaea (AOA), and lower than that of ammonia oxidizing bacteria (AOB) and nitrite oxidizing bacteria (NOB). Furthermore, a significant correlation was discovered between N. inopinata-like comammox and NOB (r = 0.60), and so was anammox bacteria (r = 0.358). Interestingly, N. inopinata-like comammox also showed positive relationships with denitrifying microbes (r = 0.559).
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Affiliation(s)
- Sidan Lu
- College of Water Sciences, Beijing Normal University, Beijing, China
| | - Yujiao Sun
- College of Water Sciences, Beijing Normal University, Beijing, China; Beijing Key Laboratory of Urban Hydrological Cycle and Sponge City Technology, Beijing, China.
| | - Baiyun Lu
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Heilongjiang, Harbin, 150090 China
| | - Danyang Zheng
- College of Water Sciences, Beijing Normal University, Beijing, China
| | - Shangwei Xu
- College of Water Sciences, Beijing Normal University, Beijing, China
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15
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Grießmeier V, Leberecht K, Gescher J. NO 3 - removal efficiency in field denitrification beds: key controlling factors and main implications. ENVIRONMENTAL MICROBIOLOGY REPORTS 2019; 11:316-329. [PMID: 30977281 DOI: 10.1111/1758-2229.12758] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Revised: 04/10/2019] [Accepted: 04/10/2019] [Indexed: 06/09/2023]
Abstract
Nitrate pollution is a growing environmental threat that affects both ground- and surface-water. The typically used technique for nitrate elimination in wastewater treatment plants cannot be applied for all water streams as it necessitates a highly developed technical infrastructure. Field denitrification beds comprise one strategy to treat surface water containing high nitrate loads, which typically is due to the increasing agricultural land use. Here, the water passes through a basin containing a cheap carbon material as electron donor that provides the environmental niche for a complex microbial biocenosis. The microorganisms catalyse the hydrolysis of the polymeric organic carbon substrate and a variety of fermentative and respiratory pathways that are in the end supposed to lead to an efficient denitrification process. This review article integrates our current knowledge on environmental and operating parameters of and within denitrification beds including biotic and abiotic factors influencing the nitrate removal efficiency. Steering of these two factors can allow to minimise pollution swapping and the formation of greenhouse gases.
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Affiliation(s)
- Victoria Grießmeier
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Kerstin Leberecht
- Institute for Biological Interfaces, Karlsruhe Institute of Technology (KIT), Eggenstein-Leopoldshafen, Germany
| | - Johannes Gescher
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
- Institute for Biological Interfaces, Karlsruhe Institute of Technology (KIT), Eggenstein-Leopoldshafen, Germany
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