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Hua C, Tao J, Zhou Z, Chai L, Yan Y, Liu J, Fu R. EEG classification model for virtual reality motion sickness based on multi-scale CNN feature correlation. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2024; 251:108218. [PMID: 38728828 DOI: 10.1016/j.cmpb.2024.108218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2023] [Revised: 03/28/2024] [Accepted: 05/06/2024] [Indexed: 05/12/2024]
Abstract
BACKGROUND Virtual reality motion sickness (VRMS) is a key issue hindering the development of virtual reality technology, and accurate detection of its occurrence is the first prerequisite for solving the issue. OBJECTIVE In this paper, a convolutional neural network (CNN) EEG detection model based on multi-scale feature correlation is proposed for detecting VRMS. METHODS The model uses multi-scale 1D convolutional layers to extract multi-scale temporal features from the multi-lead EEG data, and then calculates the feature correlations of the extracted multi-scale features among all the leads to form the feature adjacent matrixes, which converts the time-domain features to correlation-based brain network features, thus strengthen the feature representation. Finally, the correlation features of each layer are fused. The fused features are then fed into the channel attention module to filter the channels and classify them using a fully connected network. Finally, we recruit subjects to experience 6 different modes of virtual roller coaster scenes, and collect resting EEG data before and after the task to verify the model. RESULTS The results show that the accuracy, precision, recall and F1-score of this model for the recognition of VRMS are 98.66 %, 98.65 %, 98.68 %, and 98.66 %, respectively. The proposed model outperforms the current classic and advanced EEG recognition models. SIGNIFICANCE It shows that this model can be used for the recognition of VRMS based on the resting state EEG.
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Affiliation(s)
- Chengcheng Hua
- School of Automation, C-IMER, CICAEET, Nanjing University of Information Science & Technology, Nanjing 210044, China
| | - Jianlong Tao
- School of Automation, C-IMER, CICAEET, Nanjing University of Information Science & Technology, Nanjing 210044, China
| | - Zhanfeng Zhou
- School of Automation, C-IMER, CICAEET, Nanjing University of Information Science & Technology, Nanjing 210044, China
| | - Lining Chai
- School of Automation, C-IMER, CICAEET, Nanjing University of Information Science & Technology, Nanjing 210044, China
| | - Ying Yan
- School of Automation, C-IMER, CICAEET, Nanjing University of Information Science & Technology, Nanjing 210044, China
| | - Jia Liu
- School of Automation, C-IMER, CICAEET, Nanjing University of Information Science & Technology, Nanjing 210044, China
| | - Rongrong Fu
- Measurement Technology and Instrumentation Key Laboratory of Hebei Province, Department of Electrical Engineering, Yanshan University, Qinhuangdao 066000, China.
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2
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Mostafavi M, Ko SB, Shokouhi SB, Ayatollahi A. Transfer learning and self-distillation for automated detection of schizophrenia using single-channel EEG and scalogram images. Phys Eng Sci Med 2024:10.1007/s13246-024-01420-1. [PMID: 38652347 DOI: 10.1007/s13246-024-01420-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Accepted: 03/25/2024] [Indexed: 04/25/2024]
Abstract
Schizophrenia (SZ) has been acknowledged as a highly intricate mental disorder for a long time. In fact, individuals with SZ experience a blurred line between fantasy and reality, leading to a lack of awareness about their condition, which can pose significant challenges during the treatment process. Due to the importance of the issue, timely diagnosis of this illness can not only assist patients and their families in managing the condition but also enable early intervention, which may help prevent its advancement. EEG is a widely utilized technique for investigating mental disorders like SZ due to its non-invasive nature, affordability, and wide accessibility. In this study, our main goal is to develop an optimized system that can achieve automatic diagnosis of SZ with minimal input information. To optimize the system, we adopted a strategy of using single-channel EEG signals and integrated knowledge distillation and transfer learning techniques into the model. This approach was designed to improve the performance and efficiency of our proposed method for SZ diagnosis. Additionally, to leverage the pre-trained models effectively, we converted the EEG signals into images using Continuous Wavelet Transform (CWT). This transformation allowed us to harness the capabilities of pre-trained models in the image domain, enabling automatic SZ detection with enhanced efficiency. To achieve a more robust estimate of the model's performance, we employed fivefold cross-validation. The accuracy achieved from the 5-s records of the EEG signal, along with the combination of self-distillation and VGG16 for the P4 channel, is 97.81. This indicates a high level of accuracy in diagnosing SZ using the proposed method.
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Affiliation(s)
- Mohammadreza Mostafavi
- Department of Electrical Engineering, Electronic Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Seok-Bum Ko
- Division of Biomedical Engineering, Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Canada.
| | - Shahriar Baradaran Shokouhi
- Department of Electrical Engineering, Electronic Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Ahmad Ayatollahi
- Department of Electrical Engineering, Electronic Engineering, Iran University of Science and Technology, Tehran, Iran
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3
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Ellis CA, Sancho ML, Miller RL, Calhoun VD. Identifying EEG Biomarkers of Depression with Novel Explainable Deep Learning Architectures. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.03.19.585728. [PMID: 38562835 PMCID: PMC10983917 DOI: 10.1101/2024.03.19.585728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Deep learning methods are increasingly being applied to raw electroencephalogram (EEG) data. However, if these models are to be used in clinical or research contexts, methods to explain them must be developed, and if these models are to be used in research contexts, methods for combining explanations across large numbers of models must be developed to counteract the inherent randomness of existing training approaches. Model visualization-based explainability methods for EEG involve structuring a model architecture such that its extracted features can be characterized and have the potential to offer highly useful insights into the patterns that they uncover. Nevertheless, model visualization-based explainability methods have been underexplored within the context of multichannel EEG, and methods to combine their explanations across folds have not yet been developed. In this study, we present two novel convolutional neural network-based architectures and apply them for automated major depressive disorder diagnosis. Our models obtain slightly lower classification performance than a baseline architecture. However, across 50 training folds, they find that individuals with MDD exhibit higher β power, potentially higher δ power, and higher brain-wide correlation that is most strongly represented within the right hemisphere. This study provides multiple key insights into MDD and represents a significant step forward for the domain of explainable deep learning applied to raw EEG. We hope that it will inspire future efforts that will eventually enable the development of explainable EEG deep learning models that can contribute both to clinical care and novel medical research discoveries.
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Affiliation(s)
- Charles A Ellis
- Center for Translational Research in Neuroimaging and Data Science at Georgia State University, the Georgia Institute of Technology and Emory University, Atlanta GA 30303, USA
| | - Martina Lapera Sancho
- Center for Translational Research in Neuroimaging and Data Science at Georgia State University, the Georgia Institute of Technology and Emory University, Atlanta GA 30303, USA
| | - Robyn L Miller
- Center for Translational Research in Neuroimaging and Data Science at Georgia State University, the Georgia Institute of Technology and Emory University, Atlanta GA 30303, USA
| | - Vince D Calhoun
- Center for Translational Research in Neuroimaging and Data Science at Georgia State University, the Georgia Institute of Technology and Emory University, Atlanta GA 30303, USA
- Department of Computer Science, Georgia State University, Atlanta GA 30303, USA
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4
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Manjur SM, Diaz LRM, Lee IO, Skuse DH, Thompson DA, Marmolejos-Ramos F, Constable PA, Posada-Quintero HF. Detecting Autism Spectrum Disorder and Attention Deficit Hyperactivity Disorder Using Multimodal Time-Frequency Analysis with Machine Learning Using the Electroretinogram from Two Flash Strengths. J Autism Dev Disord 2024:10.1007/s10803-024-06290-w. [PMID: 38393437 DOI: 10.1007/s10803-024-06290-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/13/2024] [Indexed: 02/25/2024]
Abstract
PURPOSE Autism spectrum disorder (ASD) and attention deficit hyperactivity disorder (ADHD) are conditions that similarly alter cognitive functioning ability and challenge the social interaction, attention, and communication skills of affected individuals. Yet these are distinct neurological conditions that can exhibit diverse characteristics which require different management strategies. It is desirable to develop tools to assist with early distinction so that appropriate early interventions and support may be tailored to an individual's specific requirements. The current diagnostic procedures for ASD and ADHD require a multidisciplinary approach and can be lengthy. This study investigated the potential of electroretinogram (ERG), an eye test measuring retinal responses to light, for rapid screening of ASD and ADHD. METHODS Previous studies identified differences in ERG amplitude between ASD and ADHD, but this study explored time-frequency analysis (TFS) to capture dynamic changes in the signal. ERG data from 286 subjects (146 control, 94 ASD, 46 ADHD) was analyzed using two TFS techniques. RESULTS Key features were selected, and machine learning models were trained to classify individuals based on their ERG response. The best model achieved 70% overall accuracy in distinguishing control, ASD, and ADHD groups. CONCLUSION The ERG to the stronger flash strength provided better separation and the high frequency dynamics (80-300 Hz) were more informative features than lower frequency components. To further improve classification a greater number of different flash strengths may be required along with a discrimination comparison to participants who meet both ASD and ADHD classifications and carry both diagnoses.
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Affiliation(s)
| | | | - Irene O Lee
- Behavioral and Brain Sciences Unit, Population Policy and Practice Program, UCL Great Ormond Street Institute of Child Health, University College London, London, UK
| | - David H Skuse
- Behavioral and Brain Sciences Unit, Population Policy and Practice Program, UCL Great Ormond Street Institute of Child Health, University College London, London, UK
| | - Dorothy A Thompson
- Tony Kriss Visual Electrophysiology Unit, Clinical and Academic Department of Ophthalmology, Great Ormond Street Hospital for Children NHS Foundation Trust, London, UK
- UCL Great Ormond Street Institute for Child Health, University College London, London, UK
| | | | - Paul A Constable
- College of Nursing and Health Sciences, Flinders University, Caring Futures Institute, Adelaide, Australia
| | - Hugo F Posada-Quintero
- Department of Biomedical Engineering, University of Connecticut, 06269, Storrs, CT, USA.
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5
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Rahul J, Sharma D, Sharma LD, Nanda U, Sarkar AK. A systematic review of EEG based automated schizophrenia classification through machine learning and deep learning. Front Hum Neurosci 2024; 18:1347082. [PMID: 38419961 PMCID: PMC10899326 DOI: 10.3389/fnhum.2024.1347082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 01/26/2024] [Indexed: 03/02/2024] Open
Abstract
The electroencephalogram (EEG) serves as an essential tool in exploring brain activity and holds particular importance in the field of mental health research. This review paper examines the application of artificial intelligence (AI), encompassing machine learning (ML) and deep learning (DL), for classifying schizophrenia (SCZ) through EEG. It includes a thorough literature review that addresses the difficulties, methodologies, and discoveries in this field. ML approaches utilize conventional models like Support Vector Machines and Decision Trees, which are interpretable and effective with smaller data sets. In contrast, DL techniques, which use neural networks such as convolutional neural networks (CNNs) and long short-term memory networks (LSTMs), are more adaptable to intricate EEG patterns but require significant data and computational power. Both ML and DL face challenges concerning data quality and ethical issues. This paper underscores the importance of integrating various techniques to enhance schizophrenia diagnosis and highlights AI's potential role in this process. It also acknowledges the necessity for collaborative and ethically informed approaches in the automated classification of SCZ using AI.
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Affiliation(s)
- Jagdeep Rahul
- Department of Electronics and Communication Engineering, Rajiv Gandhi University, Arunachal Pradesh, India
| | - Diksha Sharma
- Department of Electronics and Communication, Indian Institute of Information Technology, Sri City, India
| | - Lakhan Dev Sharma
- School of Electronics Engineering, VIT-AP University, Amrawati, India
| | - Umakanta Nanda
- School of Electronics Engineering, VIT-AP University, Amrawati, India
| | - Achintya Kumar Sarkar
- Department of Electronics and Communication, Indian Institute of Information Technology, Sri City, India
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Sancho ML, Ellis CA, Miller RL, Calhoun VD. Identifying Reproducibly Important EEG Markers of Schizophrenia with an Explainable Multi-Model Deep Learning Approach. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.09.579600. [PMID: 38405889 PMCID: PMC10888920 DOI: 10.1101/2024.02.09.579600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/27/2024]
Abstract
The diagnosis of schizophrenia (SZ) can be challenging due to its diverse symptom presentation. As such, many studies have sought to identify diagnostic biomarkers of SZ using explainable machine learning methods. However, the generalizability of identified biomarkers in many machine learning-based studies is highly questionable given that most studies only analyze explanations from a small number of models. In this study, we present (1) a novel feature interaction-based explainability approach and (2) several new approaches for summarizing multi-model explanations. We implement our approach within the context of electroencephalogram (EEG) spectral power data. We further analyze both training and test set explanations with the goal of extracting generalizable insights from the models. Importantly, our analyses identify effects of SZ upon the α, β, and θ frequency bands, the left hemisphere of the brain, and interhemispheric interactions across a majority of folds. We hope that our analysis will provide helpful insights into SZ and inspire the development of robust approaches for identifying neuropsychiatric disorder biomarkers from explainable machine learning models.
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Affiliation(s)
- Martina Lapera Sancho
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, and Emory University Atlanta, USA
| | - Charles A Ellis
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, and Emory University Atlanta, USA
| | - Robyn L Miller
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, and Emory University Atlanta, USA
| | - Vince D Calhoun
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, and Emory University Atlanta, USA
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7
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Shoeibi A, Ghassemi N, Khodatars M, Moridian P, Khosravi A, Zare A, Gorriz JM, Chale-Chale AH, Khadem A, Rajendra Acharya U. Automatic diagnosis of schizophrenia and attention deficit hyperactivity disorder in rs-fMRI modality using convolutional autoencoder model and interval type-2 fuzzy regression. Cogn Neurodyn 2023; 17:1501-1523. [PMID: 37974583 PMCID: PMC10640504 DOI: 10.1007/s11571-022-09897-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2022] [Revised: 09/23/2022] [Accepted: 10/04/2022] [Indexed: 11/13/2022] Open
Abstract
Nowadays, many people worldwide suffer from brain disorders, and their health is in danger. So far, numerous methods have been proposed for the diagnosis of Schizophrenia (SZ) and attention deficit hyperactivity disorder (ADHD), among which functional magnetic resonance imaging (fMRI) modalities are known as a popular method among physicians. This paper presents an SZ and ADHD intelligent detection method of resting-state fMRI (rs-fMRI) modality using a new deep learning method. The University of California Los Angeles dataset, which contains the rs-fMRI modalities of SZ and ADHD patients, has been used for experiments. The FMRIB software library toolbox first performed preprocessing on rs-fMRI data. Then, a convolutional Autoencoder model with the proposed number of layers is used to extract features from rs-fMRI data. In the classification step, a new fuzzy method called interval type-2 fuzzy regression (IT2FR) is introduced and then optimized by genetic algorithm, particle swarm optimization, and gray wolf optimization (GWO) techniques. Also, the results of IT2FR methods are compared with multilayer perceptron, k-nearest neighbors, support vector machine, random forest, and decision tree, and adaptive neuro-fuzzy inference system methods. The experiment results show that the IT2FR method with the GWO optimization algorithm has achieved satisfactory results compared to other classifier methods. Finally, the proposed classification technique was able to provide 72.71% accuracy.
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Affiliation(s)
- Afshin Shoeibi
- FPGA Lab, Faculty of Electrical Engineering, K. N. Toosi University of Technology, Tehran, Iran
| | - Navid Ghassemi
- Computer Engineering Department, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Marjane Khodatars
- Department of Medical Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran
| | - Parisa Moridian
- Faculty of Engineering, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | - Abbas Khosravi
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Geelong, Australia
| | - Assef Zare
- Faculty of Electrical Engineering, Gonabad Branch, Islamic Azad University, Gonabad, Iran
| | - Juan M. Gorriz
- Department of Signal Theory, Networking and Communications, Universidad de Granada, Granada, Spain
| | | | - Ali Khadem
- Faculty of Electrical Engineering, K. N. Toosi University of Technology, Tehran, Iran
| | - U. Rajendra Acharya
- Ngee Ann Polytechnic, Singapore, 599489 Singapore
- Department of Biomedical Informatics and Medical Engineering, Asia University, Taichung, Taiwan
- Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Sciences, Singapore, Singapore
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8
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Ellis CA, Sattiraju A, Miller RL, Calhoun VD. Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder via Transfer Learning with Single Channel Sleep Stage Data. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.04.29.538813. [PMID: 37873255 PMCID: PMC10592604 DOI: 10.1101/2023.04.29.538813] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
As the field of deep learning has grown in recent years, its application to the domain of raw resting-state electroencephalography (EEG) has also increased. Relative to traditional machine learning methods or deep learning methods applied to manually engineered features, there are fewer methods for developing deep learning models on small raw EEG datasets. One potential approach for enhancing deep learning performance, in this case, is the use of transfer learning. While a number of studies have presented transfer learning approaches for manually engineered EEG features, relatively few approaches have been developed for raw resting-state EEG. In this study, we propose a novel EEG transfer learning approach wherein we first train a model on a large publicly available single-channel sleep stage classification dataset. We then use the learned representations to develop a classifier for automated major depressive disorder diagnosis with raw multichannel EEG. Statistical testing reveals that our approach significantly improves the performance of our model (p < 0.05), and we also find that the performance of our approach exceeds that of many previous studies using both engineered features and raw EEG. We further examine how transfer learning affected the representations learned by the model through a pair of explainability analyses, identifying key frequency bands and channels utilized across models. Our proposed approach represents a significant step forward for the domain of raw resting-state EEG classification and has broader implications for use with other electrophysiology and time-series modalities. Importantly, it has the potential to expand the use of deep learning methods across a greater variety of raw EEG datasets and lead to the development of more reliable EEG classifiers.
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Affiliation(s)
- Charles A Ellis
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, Emory University Atlanta, USA
| | - Abhinav Sattiraju
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, Emory University Atlanta, USA
| | - Robyn L Miller
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, Emory University Atlanta, USA
| | - Vince D Calhoun
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, Emory University Atlanta, USA
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9
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Jafari M, Shoeibi A, Khodatars M, Bagherzadeh S, Shalbaf A, García DL, Gorriz JM, Acharya UR. Emotion recognition in EEG signals using deep learning methods: A review. Comput Biol Med 2023; 165:107450. [PMID: 37708717 DOI: 10.1016/j.compbiomed.2023.107450] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 08/03/2023] [Accepted: 09/01/2023] [Indexed: 09/16/2023]
Abstract
Emotions are a critical aspect of daily life and serve a crucial role in human decision-making, planning, reasoning, and other mental states. As a result, they are considered a significant factor in human interactions. Human emotions can be identified through various sources, such as facial expressions, speech, behavior (gesture/position), or physiological signals. The use of physiological signals can enhance the objectivity and reliability of emotion detection. Compared with peripheral physiological signals, electroencephalogram (EEG) recordings are directly generated by the central nervous system and are closely related to human emotions. EEG signals have the great spatial resolution that facilitates the evaluation of brain functions, making them a popular modality in emotion recognition studies. Emotion recognition using EEG signals presents several challenges, including signal variability due to electrode positioning, individual differences in signal morphology, and lack of a universal standard for EEG signal processing. Moreover, identifying the appropriate features for emotion recognition from EEG data requires further research. Finally, there is a need to develop more robust artificial intelligence (AI) including conventional machine learning (ML) and deep learning (DL) methods to handle the complex and diverse EEG signals associated with emotional states. This paper examines the application of DL techniques in emotion recognition from EEG signals and provides a detailed discussion of relevant articles. The paper explores the significant challenges in emotion recognition using EEG signals, highlights the potential of DL techniques in addressing these challenges, and suggests the scope for future research in emotion recognition using DL techniques. The paper concludes with a summary of its findings.
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Affiliation(s)
- Mahboobeh Jafari
- Data Science and Computational Intelligence Institute, University of Granada, Spain
| | - Afshin Shoeibi
- Data Science and Computational Intelligence Institute, University of Granada, Spain.
| | - Marjane Khodatars
- Data Science and Computational Intelligence Institute, University of Granada, Spain
| | - Sara Bagherzadeh
- Department of Biomedical Engineering, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | - Ahmad Shalbaf
- Department of Biomedical Engineering and Medical Physics, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - David López García
- Data Science and Computational Intelligence Institute, University of Granada, Spain
| | - Juan M Gorriz
- Data Science and Computational Intelligence Institute, University of Granada, Spain; Department of Psychiatry, University of Cambridge, UK
| | - U Rajendra Acharya
- School of Mathematics, Physics and Computing, University of Southern Queensland, Springfield, Australia
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10
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Perellón-Alfonso R, Oblak A, Kuclar M, Škrlj B, Pileckyte I, Škodlar B, Pregelj P, Abellaneda-Pérez K, Bartrés-Faz D, Repovš G, Bon J. Dense attention network identifies EEG abnormalities during working memory performance of patients with schizophrenia. Front Psychiatry 2023; 14:1205119. [PMID: 37817830 PMCID: PMC10560761 DOI: 10.3389/fpsyt.2023.1205119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Accepted: 09/04/2023] [Indexed: 10/12/2023] Open
Abstract
Introduction Patients with schizophrenia typically exhibit deficits in working memory (WM) associated with abnormalities in brain activity. Alterations in the encoding, maintenance and retrieval phases of sequential WM tasks are well established. However, due to the heterogeneity of symptoms and complexity of its neurophysiological underpinnings, differential diagnosis remains a challenge. We conducted an electroencephalographic (EEG) study during a visual WM task in fifteen schizophrenia patients and fifteen healthy controls. We hypothesized that EEG abnormalities during the task could be identified, and patients successfully classified by an interpretable machine learning algorithm. Methods We tested a custom dense attention network (DAN) machine learning model to discriminate patients from control subjects and compared its performance with simpler and more commonly used machine learning models. Additionally, we analyzed behavioral performance, event-related EEG potentials, and time-frequency representations of the evoked responses to further characterize abnormalities in patients during WM. Results The DAN model was significantly accurate in discriminating patients from healthy controls, ACC = 0.69, SD = 0.05. There were no significant differences between groups, conditions, or their interaction in behavioral performance or event-related potentials. However, patients showed significantly lower alpha suppression in the task preparation, memory encoding, maintenance, and retrieval phases F(1,28) = 5.93, p = 0.022, η2 = 0.149. Further analysis revealed that the two highest peaks in the attention value vector of the DAN model overlapped in time with the preparation and memory retrieval phases, as well as with two of the four significant time-frequency ROIs. Discussion These results highlight the potential utility of interpretable machine learning algorithms as an aid in diagnosis of schizophrenia and other psychiatric disorders presenting oscillatory abnormalities.
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Affiliation(s)
- Ruben Perellón-Alfonso
- Faculty of Medicine and Health Sciences, and Institute of Neurosciences, University of Barcelona, Barcelona, Spain
- Institute of Biomedical Research August Pi i Sunyer (IDIBAPS), Barcelona, Spain
| | - Aleš Oblak
- University Psychiatric Clinic Ljubljana, Ljubljana, Slovenia
| | - Matija Kuclar
- Department of Psychiatry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia
| | - Blaž Škrlj
- Jožef Stefan Institute, Ljubljana, Slovenia
| | - Indre Pileckyte
- Center for Brain and Cognition, Pompeu Fabra University, Barcelona, Spain
| | - Borut Škodlar
- University Psychiatric Clinic Ljubljana, Ljubljana, Slovenia
- Department of Psychiatry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia
| | - Peter Pregelj
- University Psychiatric Clinic Ljubljana, Ljubljana, Slovenia
- Department of Psychiatry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia
| | - Kilian Abellaneda-Pérez
- Faculty of Medicine and Health Sciences, and Institute of Neurosciences, University of Barcelona, Barcelona, Spain
- Institute of Biomedical Research August Pi i Sunyer (IDIBAPS), Barcelona, Spain
- Institut Guttmann, Institut Universitari de Neurorehabilitació Adscrit a la UAB, Barcelona, Spain
| | - David Bartrés-Faz
- Faculty of Medicine and Health Sciences, and Institute of Neurosciences, University of Barcelona, Barcelona, Spain
- Institute of Biomedical Research August Pi i Sunyer (IDIBAPS), Barcelona, Spain
| | - Grega Repovš
- Department of Psychology, Faculty of Arts, University of Ljubljana, Ljubljana, Slovenia
| | - Jurij Bon
- University Psychiatric Clinic Ljubljana, Ljubljana, Slovenia
- Department of Psychiatry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia
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11
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Jiao Y, He X, Jiao Z. Detecting slow eye movements using multi-scale one-dimensional convolutional neural network for driver sleepiness detection. J Neurosci Methods 2023; 397:109939. [PMID: 37579794 DOI: 10.1016/j.jneumeth.2023.109939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 07/15/2023] [Accepted: 08/03/2023] [Indexed: 08/16/2023]
Abstract
BACKGROUND Slow eye movements (SEMs), which occurs during eye-closed periods with high time coverage rate during simulated driving process, indicate drivers' sleep onset. NEW METHOD For the multi-scale characteristics of slow eye movement waveforms, we propose a multi-scale one-dimensional convolutional neural network (MS-1D-CNN) for classification. The MS-1D-CNN performs multiple down-sampling processing branches on the original signal and uses the local convolutional layer to extract the features for each branch. RESULTS We evaluate the classification performance of this model on ten subjects' standard train-test datasets and continuous test datasets by means of subject-subject evaluation and leave-one-subject-out cross validation, respectively. For the standard train-test datasets, the overall average classification accuracies are about 99.1% and 98.6%, in subject-subject evaluation and leave-one-subject-out cross validation, respectively. For the continuous test datasets, the overall average values of accuracy, precision, recall and F1-score are 99.3%, 98.9%, 99.5% and 99.1% in subject-subject evaluation, are 99.2%, 98.8%, 99.3% and 99.0% in leave-one-subject-out cross validation. COMPARISON WITH EXISTING METHOD Results of the standard train-test datasets show that the overall average classification accuracy of the MS-1D-CNN is quite higher than the baseline method based on hand-designed features by 3.5% and 3.5%, in subject-subject evaluation and leave-one-subject-out cross validation, respectively. CONCLUSIONS These results suggest that multi-scale transformation in the MS-1D-CNN model can enhance the representation ability of features, thereby improving classification accuracy. Experimental results verify the good performance of the MS-1D-CNN model, even in leave-one-subject-out cross validation, thus promoting the application of SEMs detection technology for driver sleepiness detection.
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Affiliation(s)
- Yingying Jiao
- Center for Brain-like Computing and Machine Intelligence, Department of Computer Science and Engineering, Shanghai Jiao Tong University, 800 Dong Chuan Road, Shanghai 200240, China.
| | - Xiujin He
- Center for Brain-like Computing and Machine Intelligence, Department of Computer Science and Engineering, Shanghai Jiao Tong University, 800 Dong Chuan Road, Shanghai 200240, China
| | - Zhuqing Jiao
- Center for Brain-like Computing and Machine Intelligence, Department of Computer Science and Engineering, Shanghai Jiao Tong University, 800 Dong Chuan Road, Shanghai 200240, China
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12
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Khashei M, Bakhtiarvand N. Discrete learning-based intelligent methodology for heart disease diagnosis. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2023]
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13
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Soria C, Arroyo Y, Torres AM, Redondo MÁ, Basar C, Mateo J. Method for Classifying Schizophrenia Patients Based on Machine Learning. J Clin Med 2023; 12:4375. [PMID: 37445410 DOI: 10.3390/jcm12134375] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Revised: 06/21/2023] [Accepted: 06/27/2023] [Indexed: 07/15/2023] Open
Abstract
Schizophrenia is a chronic and severe mental disorder that affects individuals in various ways, particularly in their ability to perceive, process, and respond to stimuli. This condition has a significant impact on a considerable number of individuals. Consequently, the study, analysis, and characterization of this pathology are of paramount importance. Electroencephalography (EEG) is frequently utilized in the diagnostic assessment of various brain disorders due to its non-intrusiveness, excellent resolution and ease of placement. However, the manual analysis of electroencephalogram (EEG) recordings can be a complex and time-consuming task for healthcare professionals. Therefore, the automated analysis of EEG recordings can help alleviate the burden on doctors and provide valuable insights to support clinical diagnosis. Many studies are working along these lines. In this research paper, the authors propose a machine learning (ML) method based on the eXtreme Gradient Boosting (XGB) algorithm for analyzing EEG signals. The study compares the performance of the proposed XGB-based approach with four other supervised ML systems. According to the results, the proposed XGB-based method demonstrates superior performance, with an AUC value of 0.94 and an accuracy value of 0.94, surpassing the other compared methods. The implemented system exhibits high accuracy and robustness in accurately classifying schizophrenia patients based on EEG recordings. This method holds the potential to be implemented as a valuable complementary tool for clinical use in hospitals, supporting clinicians in their clinical diagnosis of schizophrenia.
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Affiliation(s)
- Carmen Soria
- Institute of Technology, University of Castilla-La Mancha, 16071 Cuenca, Spain
- Clinical Neurophysiology Service, Virgen de la Luz Hospital, 16002 Cuenca, Spain
| | - Yoel Arroyo
- Faculty of Social Sciences and Information Technology, University of Castilla-La Mancha, 45600 Talavera de la Reina, Spain
| | - Ana María Torres
- Institute of Technology, University of Castilla-La Mancha, 16071 Cuenca, Spain
| | - Miguel Ángel Redondo
- School of Informatics, University of Castilla-La Mancha, 13071 Ciudad Real, Spain
| | - Christoph Basar
- Faculty of Human and Health Sciences, University of Bremen, 28359 Bremen, Germany
| | - Jorge Mateo
- Institute of Technology, University of Castilla-La Mancha, 16071 Cuenca, Spain
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14
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Rodriguez F, He S, Tan H. The potential of convolutional neural networks for identifying neural states based on electrophysiological signals: experiments on synthetic and real patient data. Front Hum Neurosci 2023; 17:1134599. [PMID: 37333834 PMCID: PMC10272439 DOI: 10.3389/fnhum.2023.1134599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 05/03/2023] [Indexed: 06/20/2023] Open
Abstract
Processing incoming neural oscillatory signals in real-time and decoding from them relevant behavioral or pathological states is often required for adaptive Deep Brain Stimulation (aDBS) and other brain-computer interface (BCI) applications. Most current approaches rely on first extracting a set of predefined features, such as the power in canonical frequency bands or various time-domain features, and then training machine learning systems that use those predefined features as inputs and infer what the underlying brain state is at each given time point. However, whether this algorithmic approach is best suited to extract all available information contained within the neural waveforms remains an open question. Here, we aim to explore different algorithmic approaches in terms of their potential to yield improvements in decoding performance based on neural activity such as measured through local field potentials (LFPs) recordings or electroencephalography (EEG). In particular, we aim to explore the potential of end-to-end convolutional neural networks, and compare this approach with other machine learning methods that are based on extracting predefined feature sets. To this end, we implement and train a number of machine learning models, based either on manually constructed features or, in the case of deep learning-based models, on features directly learnt from the data. We benchmark these models on the task of identifying neural states using simulated data, which incorporates waveform features previously linked to physiological and pathological functions. We then assess the performance of these models in decoding movements based on local field potentials recorded from the motor thalamus of patients with essential tremor. Our findings, derived from both simulated and real patient data, suggest that end-to-end deep learning-based methods may surpass feature-based approaches, particularly when the relevant patterns within the waveform data are either unknown, difficult to quantify, or when there may be, from the point of view of the predefined feature extraction pipeline, unidentified features that could contribute to decoding performance. The methodologies proposed in this study might hold potential for application in adaptive deep brain stimulation (aDBS) and other brain-computer interface systems.
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15
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Ellis CA, Sattiraju A, Miller RL, Calhoun VD. Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder by Pretraining Deep Learning Models with Single Channel Sleep Stage Data. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.29.542700. [PMID: 37398050 PMCID: PMC10312836 DOI: 10.1101/2023.05.29.542700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2023]
Abstract
As the field of deep learning has grown in recent years, its application to the domain of raw resting-state electroencephalography (EEG) has also increased. Relative to traditional machine learning methods or deep learning methods applied to extracted features, there are fewer methods for developing deep learning models on small raw EEG datasets. One potential approach for enhancing deep learning performance in this case is the use of transfer learning. In this study, we propose a novel EEG transfer learning approach wherein we first train a model on a large publicly available sleep stage classification dataset. We then use the learned representations to develop a classifier for automated major depressive disorder diagnosis with raw multichannel EEG. We find that our approach improves model performance, and we further examine how transfer learning affected the representations learned by the model through a pair of explainability analyses. Our proposed approach represents a significant step forward for the domain raw resting-state EEG classification. Furthermore, it has the potential to expand the use of deep learning methods across more raw EEG datasets and lead to the development of more reliable EEG classifiers.
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Affiliation(s)
- Charles A Ellis
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science: Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, GA 30303 USA
| | - Abhinav Sattiraju
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science: Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, GA 30303 USA
| | - Robyn L Miller
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science: Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, GA 30303 USA
| | - Vince D Calhoun
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science: Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, GA 30303 USA
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16
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Meng X, Iraji A, Fu Z, Kochunov P, Belger A, Ford JM, McEwen S, Mathalon DH, Mueller BA, Pearlson G, Potkin SG, Preda A, Turner J, van Erp TGM, Sui J, Calhoun VD. Multi-model order spatially constrained ICA reveals highly replicable group differences and consistent predictive results from resting data: A large N fMRI schizophrenia study. Neuroimage Clin 2023; 38:103434. [PMID: 37209635 PMCID: PMC10209454 DOI: 10.1016/j.nicl.2023.103434] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2022] [Revised: 05/10/2023] [Accepted: 05/12/2023] [Indexed: 05/22/2023]
Abstract
Brain functional networks identified from resting functional magnetic resonance imaging (fMRI) data have the potential to reveal biomarkers for brain disorders, but studies of complex mental illnesses such as schizophrenia (SZ) often yield mixed results across replication studies. This is likely due in part to the complexity of the disorder, the short data acquisition time, and the limited ability of the approaches for brain imaging data mining. Therefore, the use of analytic approaches which can both capture individual variability while offering comparability across analyses is highly preferred. Fully blind data-driven approaches such as independent component analysis (ICA) are hard to compare across studies, and approaches that use fixed atlas-based regions can have limited sensitivity to individual sensitivity. By contrast, spatially constrained ICA (scICA) provides a hybrid, fully automated solution that can incorporate spatial network priors while also adapting to new subjects. However, scICA has thus far only been used with a single spatial scale (ICA dimensionality, i.e., ICA model order). In this work, we present an approach using multi-objective optimization scICA with reference algorithm (MOO-ICAR) to extract subject-specific intrinsic connectivity networks (ICNs) from fMRI data at multiple spatial scales, which also enables us to study interactions across spatial scales. We evaluate this approach using a large N (N > 1,600) study of schizophrenia divided into separate validation and replication sets. A multi-scale ICN template was estimated and labeled, then used as input into scICA which was computed on an individual subject level. We then performed a subsequent analysis of multiscale functional network connectivity (msFNC) to evaluate the patient data, including group differences and classification. Results showed highly consistent group differences in msFNC in regions including cerebellum, thalamus, and motor/auditory networks. Importantly, multiple msFNC pairs linking different spatial scales were implicated. The classification model built on the msFNC features obtained up to 85% F1 score, 83% precision, and 88% recall, indicating the strength of the proposed framework in detecting group differences between schizophrenia and the control group. Finally, we evaluated the relationship of the identified patterns to positive symptoms and found consistent results across datasets. The results verified the robustness of our framework in evaluating brain functional connectivity of schizophrenia at multiple spatial scales, implicated consistent and replicable brain networks, and highlighted a promising approach for leveraging resting fMRI data for brain biomarker development.
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Affiliation(s)
- Xing Meng
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory University, Atlanta, GA, USA
| | - Armin Iraji
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory University, Atlanta, GA, USA
| | - Zening Fu
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory University, Atlanta, GA, USA
| | - Peter Kochunov
- Maryland Psychiatric Research Center, Department of Psychiatry, School of Medicine, University of Maryland, Baltimore, MD, USA
| | - Aysenil Belger
- Department of Psychiatry, University of North Carolina, Chapel Hill, NC, USA
| | - Judy M Ford
- Department of Psychiatry, University of California San Francisco, San Francisco, CA, USA; San Francisco VA Medical Center, San Francisco, CA, USA
| | - Sara McEwen
- Department of Psychiatry and Biobehavioral Sciences, University of California Los Angeles, Los Angeles, CA, USA
| | - Daniel H Mathalon
- Department of Psychiatry, University of California San Francisco, San Francisco, CA, USA; San Francisco VA Medical Center, San Francisco, CA, USA
| | - Bryon A Mueller
- Department of Psychiatry, University of Minnesota, Minneapolis, MN, USA
| | - Godfrey Pearlson
- Departments of Psychiatry and Neuroscience, Yale University, School of Medicine, New Haven, CT, USA
| | - Steven G Potkin
- Department of Psychiatry and Human Behavior, University of California Irvine, Irvine, CA, USA
| | - Adrian Preda
- Department of Psychiatry and Human Behavior, University of California Irvine, Irvine, CA, USA
| | - Jessica Turner
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory University, Atlanta, GA, USA; Department of Psychology, Georgia State University, Atlanta, GA, USA
| | - Theo G M van Erp
- Clinical Translational Neuroscience Laboratory, Department of Psychiatry and Human Behavior, University of California Irvine, Irvine, CA, USA
| | - Jing Sui
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory University, Atlanta, GA, USA; Brainnetome Center and National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing, China
| | - Vince D Calhoun
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory University, Atlanta, GA, USA; Department of Psychology, Georgia State University, Atlanta, GA, USA.
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17
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Jafari M, Shoeibi A, Khodatars M, Ghassemi N, Moridian P, Alizadehsani R, Khosravi A, Ling SH, Delfan N, Zhang YD, Wang SH, Gorriz JM, Alinejad-Rokny H, Acharya UR. Automated diagnosis of cardiovascular diseases from cardiac magnetic resonance imaging using deep learning models: A review. Comput Biol Med 2023; 160:106998. [PMID: 37182422 DOI: 10.1016/j.compbiomed.2023.106998] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2022] [Revised: 03/01/2023] [Accepted: 04/28/2023] [Indexed: 05/16/2023]
Abstract
In recent years, cardiovascular diseases (CVDs) have become one of the leading causes of mortality globally. At early stages, CVDs appear with minor symptoms and progressively get worse. The majority of people experience symptoms such as exhaustion, shortness of breath, ankle swelling, fluid retention, and other symptoms when starting CVD. Coronary artery disease (CAD), arrhythmia, cardiomyopathy, congenital heart defect (CHD), mitral regurgitation, and angina are the most common CVDs. Clinical methods such as blood tests, electrocardiography (ECG) signals, and medical imaging are the most effective methods used for the detection of CVDs. Among the diagnostic methods, cardiac magnetic resonance imaging (CMRI) is increasingly used to diagnose, monitor the disease, plan treatment and predict CVDs. Coupled with all the advantages of CMR data, CVDs diagnosis is challenging for physicians as each scan has many slices of data, and the contrast of it might be low. To address these issues, deep learning (DL) techniques have been employed in the diagnosis of CVDs using CMR data, and much research is currently being conducted in this field. This review provides an overview of the studies performed in CVDs detection using CMR images and DL techniques. The introduction section examined CVDs types, diagnostic methods, and the most important medical imaging techniques. The following presents research to detect CVDs using CMR images and the most significant DL methods. Another section discussed the challenges in diagnosing CVDs from CMRI data. Next, the discussion section discusses the results of this review, and future work in CVDs diagnosis from CMR images and DL techniques are outlined. Finally, the most important findings of this study are presented in the conclusion section.
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Affiliation(s)
- Mahboobeh Jafari
- Internship in BioMedical Machine Learning Lab, The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia
| | - Afshin Shoeibi
- Internship in BioMedical Machine Learning Lab, The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia; Data Science and Computational Intelligence Institute, University of Granada, Spain.
| | - Marjane Khodatars
- Data Science and Computational Intelligence Institute, University of Granada, Spain
| | - Navid Ghassemi
- Internship in BioMedical Machine Learning Lab, The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia
| | - Parisa Moridian
- Data Science and Computational Intelligence Institute, University of Granada, Spain
| | - Roohallah Alizadehsani
- Institute for Intelligent Systems Research and Innovation, Deakin University, Geelong, Australia
| | - Abbas Khosravi
- Institute for Intelligent Systems Research and Innovation, Deakin University, Geelong, Australia
| | - Sai Ho Ling
- Faculty of Engineering and IT, University of Technology Sydney (UTS), Australia
| | - Niloufar Delfan
- Faculty of Computer Engineering, Dept. of Artificial Intelligence Engineering, K. N. Toosi University of Technology, Tehran, Iran
| | - Yu-Dong Zhang
- School of Computing and Mathematical Sciences, University of Leicester, Leicester, UK
| | - Shui-Hua Wang
- School of Computing and Mathematical Sciences, University of Leicester, Leicester, UK
| | - Juan M Gorriz
- Data Science and Computational Intelligence Institute, University of Granada, Spain; Department of Psychiatry, University of Cambridge, UK
| | - Hamid Alinejad-Rokny
- BioMedical Machine Learning Lab, The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia; UNSW Data Science Hub, The University of New South Wales, Sydney, NSW, 2052, Australia; Health Data Analytics Program, Centre for Applied Artificial Intelligence, Macquarie University, Sydney, 2109, Australia
| | - U Rajendra Acharya
- School of Mathematics, Physics and Computing, University of Southern Queensland, Springfield, Australia; Dept. of Biomedical Informatics and Medical Engineering, Asia University, Taichung, Taiwan
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18
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Baygin M, Barua PD, Chakraborty S, Tuncer I, Dogan S, Palmer E, Tuncer T, Kamath AP, Ciaccio EJ, Acharya UR. CCPNet136: automated detection of schizophrenia using carbon chain pattern and iterative TQWT technique with EEG signals. Physiol Meas 2023; 44. [PMID: 36599170 DOI: 10.1088/1361-6579/acb03c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Accepted: 01/04/2023] [Indexed: 01/05/2023]
Abstract
Objective.Schizophrenia (SZ) is a severe, chronic psychiatric-cognitive disorder. The primary objective of this work is to present a handcrafted model using state-of-the-art technique to detect SZ accurately with EEG signals.Approach.In our proposed work, the features are generated using a histogram-based generator and an iterative decomposition model. The graph-based molecular structure of the carbon chain is employed to generate low-level features. Hence, the developed feature generation model is called the carbon chain pattern (CCP). An iterative tunable q-factor wavelet transform (ITQWT) technique is implemented in the feature extraction phase to generate various sub-bands of the EEG signal. The CCP was applied to the generated sub-bands to obtain several feature vectors. The clinically significant features were selected using iterative neighborhood component analysis (INCA). The selected features were then classified using the k nearest neighbor (kNN) with a 10-fold cross-validation strategy. Finally, the iterative weighted majority method was used to obtain the results in multiple channels.Main results.The presented CCP-ITQWT and INCA-based automated model achieved an accuracy of 95.84% and 99.20% using a single channel and majority voting method, respectively with kNN classifier.Significance.Our results highlight the success of the proposed CCP-ITQWT and INCA-based model in the automated detection of SZ using EEG signals.
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Affiliation(s)
- Mehmet Baygin
- Department of Computer Engineering, College of Engineering, Ardahan University, Ardahan, Turkey
| | - Prabal Datta Barua
- School of Management & Enterprise, University of Southern Queensland, Australia.,Faculty of Engineering and Information Technology, University of Technology Sydney, Australia
| | - Subrata Chakraborty
- School of Science and Technology, Faculty of Science, Agriculture, Business and Law, University of New England, Armidale, NSW, 2351, Australia.,Center for Advanced Modelling and Geospatial Information Systems, Faculty of Engineering and IT, University of Technology Sydney, Sydney, NSW, 2007, Australia
| | - Ilknur Tuncer
- Elazig Governorship, Interior Ministry, Elazig, Turkey
| | - Sengul Dogan
- Department of Digital Forensics Engineering, College of Technology, Firat University, Elazig, Turkey
| | - Elizabeth Palmer
- Centre of Clinical Genetics, Sydney Children's Hospitals Network, Randwick 2031, Australia.,School of Women's and Children's Health, University of New South Wales, Randwick 2031, Australia
| | - Turker Tuncer
- Department of Digital Forensics Engineering, College of Technology, Firat University, Elazig, Turkey
| | - Aditya P Kamath
- Biomedical Engineering, Brown University, Providence, RI, United States of America
| | - Edward J Ciaccio
- Department of Medicine, Columbia University Irving Medical Center, United States of America
| | - U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, S599489, Singapore.,Department of Biomedical Engineering, School of Science and Technology, SUSS University, Singapore.,Department of Biomedical Informatics and Medical Engineering, Asia University, Taichung, Taiwan
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Sharma M, Patel RK, Garg A, SanTan R, Acharya UR. Automated detection of schizophrenia using deep learning: a review for the last decade. Physiol Meas 2023; 44. [PMID: 36630717 DOI: 10.1088/1361-6579/acb24d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Accepted: 01/11/2023] [Indexed: 01/12/2023]
Abstract
Schizophrenia (SZ) is a devastating mental disorder that disrupts higher brain functions like thought, perception, etc., with a profound impact on the individual's life. Deep learning (DL) can detect SZ automatically by learning signal data characteristics hierarchically without the need for feature engineering associated with traditional machine learning. We performed a systematic review of DL models for SZ detection. Various deep models like long short-term memory, convolution neural networks, AlexNet, etc., and composite methods have been published based on electroencephalographic signals, and structural and/or functional magnetic resonance imaging acquired from SZ patients and healthy patients control subjects in diverse public and private datasets. The studies, the study datasets, and model methodologies are reported in detail. In addition, the challenges of DL models for SZ diagnosis and future works are discussed.
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Affiliation(s)
- Manish Sharma
- Department of Electrical and Computer Science Engineering, Institute of Infrastructure Technology Research and Management, Ahmedabad 380026, India
| | - Ruchit Kumar Patel
- Department of Electrical and Computer Science Engineering, Institute of Infrastructure Technology Research and Management, Ahmedabad 380026, India
| | - Akshat Garg
- Department of Electrical and Computer Science Engineering, Institute of Infrastructure Technology Research and Management, Ahmedabad 380026, India
| | - Ru SanTan
- Department of Cardiology, National Heart Centre Singapore, Singapore 169609, Singapore
| | - U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 639798, Singapore.,Department of Bioinformatics and Medical Engineering, Asia University, Taichung 41354, Taiwan.,Department of Biomedical Engineering, School of Science and Technology, Singapore 639798, Singapore
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20
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Identification of Clinical Features Associated with Mortality in COVID-19 Patients. OPERATIONS RESEARCH FORUM 2023. [PMCID: PMC9984757 DOI: 10.1007/s43069-022-00191-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
Abstract
AbstractUnderstanding clinical features and risk factors associated with COVID-19 mortality is needed to early identify critically ill patients, initiate treatments and prevent mortality. A retrospective study on COVID-19 patients referred to a tertiary hospital in Iran between March and November 2020 was conducted. COVID-19-related mortality and its association with clinical features including headache, chest pain, symptoms on computerized tomography (CT), hospitalization, time to infection, history of neurological disorders, having a single or multiple risk factors, fever, myalgia, dizziness, seizure, abdominal pain, nausea, vomiting, diarrhoea and anorexia were investigated. Based on the investigation outcome, decision tree and dimension reduction algorithms were used to identify the aforementioned risk factors. Of the 3008 patients (mean age 59.3 ± 18.7 years, 44% women) with COVID-19, 373 died. There was a significant association between COVID-19 mortality and old age, headache, chest pain, low respiratory rate, oxygen saturation < 93%, need for a mechanical ventilator, having symptoms on CT, hospitalization, time to infection, neurological disorders, cardiovascular diseases and having a risk factor or multiple risk factors. In contrast, there was no significant association between mortality and gender, fever, myalgia, dizziness, seizure, abdominal pain, nausea, vomiting, diarrhoea and anorexia. Our results might help identify early symptoms related to COVID-19 and better manage patients according to the extracted decision tree. The proposed ML models identified a number of clinical features and risk factors associated with mortality in COVID-19 patients. These models if implemented in a clinical setting might help to early identify patients needing medical attention and care. However, more studies are needed to confirm these findings.
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Chen Z, Liu X, Yang Q, Wang YJ, Miao K, Gong Z, Yu Y, Leonov A, Liu C, Feng Z, Chuan-Peng H. Evaluation of Risk of Bias in Neuroimaging-Based Artificial Intelligence Models for Psychiatric Diagnosis: A Systematic Review. JAMA Netw Open 2023; 6:e231671. [PMID: 36877519 PMCID: PMC9989906 DOI: 10.1001/jamanetworkopen.2023.1671] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 03/07/2023] Open
Abstract
IMPORTANCE Neuroimaging-based artificial intelligence (AI) diagnostic models have proliferated in psychiatry. However, their clinical applicability and reporting quality (ie, feasibility) for clinical practice have not been systematically evaluated. OBJECTIVE To systematically assess the risk of bias (ROB) and reporting quality of neuroimaging-based AI models for psychiatric diagnosis. EVIDENCE REVIEW PubMed was searched for peer-reviewed, full-length articles published between January 1, 1990, and March 16, 2022. Studies aimed at developing or validating neuroimaging-based AI models for clinical diagnosis of psychiatric disorders were included. Reference lists were further searched for suitable original studies. Data extraction followed the CHARMS (Checklist for Critical Appraisal and Data Extraction for Systematic Reviews of Prediction Modeling Studies) and PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-analyses) guidelines. A closed-loop cross-sequential design was used for quality control. The PROBAST (Prediction Model Risk of Bias Assessment Tool) and modified CLEAR (Checklist for Evaluation of Image-Based Artificial Intelligence Reports) benchmarks were used to systematically evaluate ROB and reporting quality. FINDINGS A total of 517 studies presenting 555 AI models were included and evaluated. Of these models, 461 (83.1%; 95% CI, 80.0%-86.2%) were rated as having a high overall ROB based on the PROBAST. The ROB was particular high in the analysis domain, including inadequate sample size (398 of 555 models [71.7%; 95% CI, 68.0%-75.6%]), poor model performance examination (with 100% of models lacking calibration examination), and lack of handling data complexity (550 of 555 models [99.1%; 95% CI, 98.3%-99.9%]). None of the AI models was perceived to be applicable to clinical practices. Overall reporting completeness (ie, number of reported items/number of total items) for the AI models was 61.2% (95% CI, 60.6%-61.8%), and the completeness was poorest for the technical assessment domain with 39.9% (95% CI, 38.8%-41.1%). CONCLUSIONS AND RELEVANCE This systematic review found that the clinical applicability and feasibility of neuroimaging-based AI models for psychiatric diagnosis were challenged by a high ROB and poor reporting quality. Particularly in the analysis domain, ROB in AI diagnostic models should be addressed before clinical application.
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Affiliation(s)
- Zhiyi Chen
- School of Psychology, Third Military Medical University, Chongqing, China
- Experimental Research Center for Medical and Psychological Science, Third Military Medical University, Chongqing, China
| | - Xuerong Liu
- School of Psychology, Third Military Medical University, Chongqing, China
- Experimental Research Center for Medical and Psychological Science, Third Military Medical University, Chongqing, China
| | - Qingwu Yang
- Department of Neurology, Daping Hospital, Third Military Medical University, Chongqing, China
| | - Yan-Jiang Wang
- Department of Neurology, Daping Hospital, Third Military Medical University, Chongqing, China
| | - Kuan Miao
- School of Psychology, Third Military Medical University, Chongqing, China
- Experimental Research Center for Medical and Psychological Science, Third Military Medical University, Chongqing, China
| | - Zheng Gong
- School of Psychology, Third Military Medical University, Chongqing, China
- Experimental Research Center for Medical and Psychological Science, Third Military Medical University, Chongqing, China
| | - Yang Yu
- School of Psychology, Third Military Medical University, Chongqing, China
| | - Artemiy Leonov
- Department of Psychology, Clark University, Worcester, Massachusetts
| | - Chunlei Liu
- School of Psychology, Qufu Normal University, Qufu, China
| | - Zhengzhi Feng
- School of Psychology, Third Military Medical University, Chongqing, China
- Experimental Research Center for Medical and Psychological Science, Third Military Medical University, Chongqing, China
| | - Hu Chuan-Peng
- School of Psychology, Nanjing Normal University, Nanjing, China
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Yang CY, Chen PC, Huang WC. Cross-Domain Transfer of EEG to EEG or ECG Learning for CNN Classification Models. SENSORS (BASEL, SWITZERLAND) 2023; 23:2458. [PMID: 36904661 PMCID: PMC10007254 DOI: 10.3390/s23052458] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Revised: 02/19/2023] [Accepted: 02/20/2023] [Indexed: 06/18/2023]
Abstract
Electroencephalography (EEG) is often used to evaluate several types of neurological brain disorders because of its noninvasive and high temporal resolution. In contrast to electrocardiography (ECG), EEG can be uncomfortable and inconvenient for patients. Moreover, deep-learning techniques require a large dataset and a long time for training from scratch. Therefore, in this study, EEG-EEG or EEG-ECG transfer learning strategies were applied to explore their effectiveness for the training of simple cross-domain convolutional neural networks (CNNs) used in seizure prediction and sleep staging systems, respectively. The seizure model detected interictal and preictal periods, whereas the sleep staging model classified signals into five stages. The patient-specific seizure prediction model with six frozen layers achieved 100% accuracy for seven out of nine patients and required only 40 s of training time for personalization. Moreover, the cross-signal transfer learning EEG-ECG model for sleep staging achieved an accuracy approximately 2.5% higher than that of the ECG model; additionally, the training time was reduced by >50%. In summary, transfer learning from an EEG model to produce personalized models for a more convenient signal can both reduce the training time and increase the accuracy; moreover, challenges such as data insufficiency, variability, and inefficiency can be effectively overcome.
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23
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Plucińska R, Jędrzejewski K, Malinowska U, Rogala J. Leveraging Multiple Distinct EEG Training Sessions for Improvement of Spectral-Based Biometric Verification Results. SENSORS (BASEL, SWITZERLAND) 2023; 23:2057. [PMID: 36850654 PMCID: PMC9963573 DOI: 10.3390/s23042057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Revised: 02/07/2023] [Accepted: 02/08/2023] [Indexed: 06/18/2023]
Abstract
Most studies on EEG-based biometry recognition report results based on signal databases, with a limited number of recorded EEG sessions using the same single EEG recording for both training and testing a proposed model. However, the EEG signal is highly vulnerable to interferences, electrode placement, and temporary conditions, which can lead to overestimated assessments of the considered methods. Our study examined how different numbers of distinct recording sessions used as training sessions would affect EEG-based verification. We analyzed the original data from 29 participants with 20 distinct recorded sessions each, as well as 23 additional impostors with only one session each. We applied raw coefficients of power spectral density estimate, and the coefficients of power spectral density estimate converted to the decibel scale, as the input to a shallow neural network. Our study showed that the variance introduced by multiple recording sessions affects sensitivity. We also showed that increasing the number of sessions above eight did not improve the results under our conditions. For 15 training sessions, the achieved accuracy was 96.7 ± 4.2%, and for eight training sessions and 12 test sessions, it was 94.9 ± 4.6%. For 15 training sessions, the rate of successful impostor attacks over all attack attempts was 3.1 ± 2.2%, but this number was not significantly different from using six recording sessions for training. Our findings indicate the need to include data from multiple recording sessions in EEG-based recognition for training, and that increasing the number of test sessions did not significantly affect the obtained results. Although the presented results are for the resting-state, they may serve as a baseline for other paradigms.
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Affiliation(s)
- Renata Plucińska
- Institute of Electronic Systems, Faculty of Electronics and Information Technology, Warsaw University of Technology, 00-665 Warsaw, Poland
| | - Konrad Jędrzejewski
- Institute of Electronic Systems, Faculty of Electronics and Information Technology, Warsaw University of Technology, 00-665 Warsaw, Poland
| | - Urszula Malinowska
- Institute of Experimental Physics, Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland
| | - Jacek Rogala
- Institute of Experimental Physics, Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland
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24
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Maddury S. Automated Huntington's Disease Prognosis via Biomedical Signals and Shallow Machine Learning. ARXIV 2023:arXiv:2302.03605v2. [PMID: 36798456 PMCID: PMC9934728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Abstract
Huntington's disease (HD) is a rare, genetically-determined brain disorder that limits the life of the patient, although early prognosis of HD can substantially improve the patient's quality of life. Current HD prognosis methods include using a variety of complex biomarkers such as clinical and imaging factors, however these methods have many shortfalls, such as their resource demand and failure to distinguish symptomatic and asymptomatic patients. Quantitative biomedical signaling has been used for diagnosis of other neurological disorders such as schizophrenia, and has potential for exposing abnormalities in HD patients. In this project, we used a premade, certified dataset collected at a clinic with 27 HD positive patients, 36 controls, and 6 unknowns with electroencephalography, electrocardiography, and functional near-infrared spectroscopy data. We first preprocessed the data and extracted a variety of features from both the transformed and raw signals, after which we applied a plethora of shallow machine learning techniques. We found the highest accuracy was achieved by a scaled-out Extremely Randomized Trees algorithm, with area under the curve of the receiver operator characteristic of 0.963 and accuracy of 91.353%. The subsequent feature analysis showed that 60.865% of the features had p<0.05, with the features from the raw signal being most significant. The results indicate the promise of neural and cardiac signals for marking abnormalities in HD, as well as evaluating the progression of the disease in patients.
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25
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Shen D, Qiu X, Jiang X, Wang D. Dance emotion recognition based on linear predictive Meir frequency cepstrum coefficient and bidirectional long short-term memory from robot environment. Front Neurorobot 2022; 16:1067729. [PMID: 36439288 PMCID: PMC9691754 DOI: 10.3389/fnbot.2022.1067729] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Accepted: 10/31/2022] [Indexed: 07/30/2023] Open
Abstract
Dance emotion recognition is an important research direction of automatic speech recognition, especially in the robot environment. It is an important research content of dance emotion recognition to extract the features that best represent speech emotion and to construct an acoustic model with strong robustness and generalization. The dance emotion data set is small in size and high in dimension. The traditional recurrent neural network (RNN) has the problem of long-range dependence disappearance, and due to the focus on local information of convolutional neural network (CNN), the mining of potential relationships between frames in the input sequence is insufficient. To solve the above problems, this paper proposes a novel linear predictive Meir frequency cepstrum coefficient and bidirectional long short-term memory (LSTM) for dance emotion recognition. In this paper, the linear prediction coefficient (LPC) and Meier frequency cepstrum coefficient (MFCC) are combined to obtain a new feature, namely the linear prediction Meier frequency cepstrum coefficient (LPMFCC). Then, the combined feature obtained by combining LPMFCC with energy feature is used as the extracted dance feature. The extracted features are input into the bidirectional LSTM network for training. Finally, support vector machine (SVM) is used to classify the obtained features through the full connection layer. Finally, we conduct experiments on public data sets and obtain the better effectiveness compared with the state-of-art dance motion recognition methods.
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Affiliation(s)
- Dianhuai Shen
- College of Music and Dance, Huaqiao University, Xiamen, China
| | - Xiaoxi Qiu
- College of Education, Xiamen Nanyang Vocational College, Xiamen, China
| | - Xueying Jiang
- School of Public Policy and Management, Tsinghua University, Beijing, China
| | - Dan Wang
- Department of Computer Science, Heilongjiang University of Science and Technology, Harbin, China
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26
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Barile B, Ashtari P, Stamile C, Marzullo A, Maes F, Durand-Dubief F, Van Huffel S, Sappey-Marinier D. Classification of multiple sclerosis clinical profiles using machine learning and grey matter connectome. Front Robot AI 2022; 9:926255. [PMID: 36313252 PMCID: PMC9608344 DOI: 10.3389/frobt.2022.926255] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 08/18/2022] [Indexed: 11/24/2022] Open
Abstract
Purpose: The main goal of this study is to investigate the discrimination power of Grey Matter (GM) thickness connectome data between Multiple Sclerosis (MS) clinical profiles using statistical and Machine Learning (ML) methods. Materials and Methods: A dataset composed of 90 MS patients acquired at the MS clinic of Lyon Neurological Hospital was used for the analysis. Four MS profiles were considered, corresponding to Clinical Isolated Syndrome (CIS), Relapsing-Remitting MS (RRMS), Secondary Progressive MS (SPMS), and Primary Progressive MS (PPMS). Each patient was classified in one of these profiles by our neurologist and underwent longitudinal MRI examinations including T1-weighted image acquisition at each examination, from which the GM tissue was segmented and the cortical GM thickness measured. Following the GM parcellation using two different atlases (FSAverage and Glasser 2016), the morphological connectome was built and six global metrics (Betweenness Centrality (BC), Assortativity (r), Transitivity (T), Efficiency (Eg), Modularity (Q) and Density (D)) were extracted. Based on their connectivity metrics, MS profiles were first statistically compared and second, classified using four different learning machines (Logistic Regression, Random Forest, Support Vector Machine and AdaBoost), combined in a higher level ensemble model by majority voting. Finally, the impact of the GM spatial resolution on the MS clinical profiles classification was analyzed. Results: Using binary comparisons between the four MS clinical profiles, statistical differences and classification performances higher than 0.7 were observed. Good performances were obtained when comparing the two early clinical forms, RRMS and PPMS (F1 score of 0.86), and the two neurodegenerative profiles, PPMS and SPMS (F1 score of 0.72). When comparing the two atlases, slightly better performances were obtained with the Glasser 2016 atlas, especially between RRMS with PPMS (F1 score of 0.83), compared to the FSAverage atlas (F1 score of 0.69). Also, the thresholding value for graph binarization was investigated suggesting more informative graph properties in the percentile range between 0.6 and 0.8. Conclusion: An automated pipeline was proposed for the classification of MS clinical profiles using six global graph metrics extracted from the GM morphological connectome of MS patients. This work demonstrated that GM morphological connectivity data could provide good classification performances by combining four simple ML models, without the cost of long and complex MR techniques, such as MR diffusion, and/or deep learning architectures.
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Affiliation(s)
- Berardino Barile
- CREATIS (UMR 5220 CNRS & U1294 INSERM), Université Claude Bernard Lyon1, INSA-Lyon, Université de Lyon, Lyon, France
- Department of Electrical Engineering, KU Leuven, Leuven, Belgium
| | - Pooya Ashtari
- Department of Electrical Engineering, KU Leuven, Leuven, Belgium
| | | | - Aldo Marzullo
- Department of Mathematics and Computer Science, University of Calabria, Rende, Italy
| | - Frederik Maes
- Department of Electrical Engineering, KU Leuven, Leuven, Belgium
| | - Françoise Durand-Dubief
- CREATIS (UMR 5220 CNRS & U1294 INSERM), Université Claude Bernard Lyon1, INSA-Lyon, Université de Lyon, Lyon, France
- Hôpital Neurologique, Service de Neurologie, Hospices Civils de Lyon, Bron, France
| | | | - Dominique Sappey-Marinier
- CREATIS (UMR 5220 CNRS & U1294 INSERM), Université Claude Bernard Lyon1, INSA-Lyon, Université de Lyon, Lyon, France
- CERMEP–Imagerie du Vivant, Université de Lyon, Lyon, France
- *Correspondence: Dominique Sappey-Marinier,
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27
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Li M, Liu Y, Liu Y, Pu C, Yin R, Zeng Z, Deng L, Wang X. Resting-state EEG-based convolutional neural network for the diagnosis of depression and its severity. Front Physiol 2022; 13:956254. [PMID: 36299253 PMCID: PMC9589234 DOI: 10.3389/fphys.2022.956254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Accepted: 09/20/2022] [Indexed: 11/13/2022] Open
Abstract
Purpose: The study aimed to assess the value of the resting-state electroencephalogram (EEG)-based convolutional neural network (CNN) method for the diagnosis of depression and its severity in order to better serve depressed patients and at-risk populations. Methods: In this study, we used the resting state EEG-based CNN to identify depression and evaluated its severity. The EEG data were collected from depressed patients and healthy people using the Nihon Kohden EEG-1200 system. Analytical processing of resting-state EEG data was performed using Python and MATLAB software applications. The questionnaire included the Self-Rating Anxiety Scale (SAS), Self-Rating Depression Scale (SDS), Symptom Check-List-90 (SCL-90), and the Eysenck Personality Questionnaire (EPQ). Results: A total of 82 subjects were included in this study, with 41 in the depression group and 41 in the healthy control group. The area under the curve (AUC) of the resting-state EEG-based CNN in depression diagnosis was 0.74 (95%CI: 0.70–0.77) with an accuracy of 66.40%. In the depression group, the SDS, SAS, SCL-90 subscales, and N scores were significantly higher in the major depression group than those in the non-major depression group (p < 0.05). The AUC of the model in depression severity was 0.70 (95%CI: 0.65–0.75) with an accuracy of 66.93%. Correlation analysis revealed that major depression AI scores were significantly correlated with SAS scores (r = 0.508, p = 0.003) and SDS scores (r = 0.765, p < 0.001). Conclusion: Our model can accurately identify the depression-specific EEG signal in terms of depression diagnosis and severity identification. It would eventually provide new strategies for early diagnosis of depression and its severity.
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Affiliation(s)
- Mengqian Li
- Department of Psychosomatic Medicine, The First Affiliated Hospital of Nanchang University, Nanchang, China
| | - Yuan Liu
- Department of Psychosomatic Medicine, The First Affiliated Hospital of Nanchang University, Nanchang, China
| | - Yan Liu
- Second Clinical Medical College, Nanchang University, Nanchang, China
| | - Changqin Pu
- Queen Mary College, Nanchang University, Nanchang, China
| | - Ruocheng Yin
- Queen Mary College, Nanchang University, Nanchang, China
| | - Ziqiang Zeng
- Jiangxi Provincial Key Laboratory of Preventive Medicine, School of Public Health, Nanchang University, Nanchang, China
- School of Public Health, Nanchang University, Nanchang, China
| | - Libin Deng
- Jiangxi Provincial Key Laboratory of Preventive Medicine, School of Public Health, Nanchang University, Nanchang, China
- *Correspondence: Libin Deng, ; Xing Wang,
| | - Xing Wang
- School of Life Sciences, Nanchang University, Nanchang, China
- Clinical Medical Experiment Center, Nanchang University, Nanchang, China
- *Correspondence: Libin Deng, ; Xing Wang,
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28
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Moridian P, Ghassemi N, Jafari M, Salloum-Asfar S, Sadeghi D, Khodatars M, Shoeibi A, Khosravi A, Ling SH, Subasi A, Alizadehsani R, Gorriz JM, Abdulla SA, Acharya UR. Automatic autism spectrum disorder detection using artificial intelligence methods with MRI neuroimaging: A review. Front Mol Neurosci 2022; 15:999605. [PMID: 36267703 PMCID: PMC9577321 DOI: 10.3389/fnmol.2022.999605] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 08/09/2022] [Indexed: 12/04/2022] Open
Abstract
Autism spectrum disorder (ASD) is a brain condition characterized by diverse signs and symptoms that appear in early childhood. ASD is also associated with communication deficits and repetitive behavior in affected individuals. Various ASD detection methods have been developed, including neuroimaging modalities and psychological tests. Among these methods, magnetic resonance imaging (MRI) imaging modalities are of paramount importance to physicians. Clinicians rely on MRI modalities to diagnose ASD accurately. The MRI modalities are non-invasive methods that include functional (fMRI) and structural (sMRI) neuroimaging methods. However, diagnosing ASD with fMRI and sMRI for specialists is often laborious and time-consuming; therefore, several computer-aided design systems (CADS) based on artificial intelligence (AI) have been developed to assist specialist physicians. Conventional machine learning (ML) and deep learning (DL) are the most popular schemes of AI used for diagnosing ASD. This study aims to review the automated detection of ASD using AI. We review several CADS that have been developed using ML techniques for the automated diagnosis of ASD using MRI modalities. There has been very limited work on the use of DL techniques to develop automated diagnostic models for ASD. A summary of the studies developed using DL is provided in the Supplementary Appendix. Then, the challenges encountered during the automated diagnosis of ASD using MRI and AI techniques are described in detail. Additionally, a graphical comparison of studies using ML and DL to diagnose ASD automatically is discussed. We suggest future approaches to detecting ASDs using AI techniques and MRI neuroimaging.
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Affiliation(s)
- Parisa Moridian
- Faculty of Engineering, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | - Navid Ghassemi
- Department of Computer Engineering, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Mahboobeh Jafari
- Faculty of Electrical and Computer Engineering, Semnan University, Semnan, Iran
| | - Salam Salloum-Asfar
- Neurological Disorders Research Center, Qatar Biomedical Research Institute, Hamad Bin Khalifa University, Qatar Foundation, Doha, Qatar
| | - Delaram Sadeghi
- Department of Medical Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran
| | - Marjane Khodatars
- Department of Medical Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran
| | - Afshin Shoeibi
- Data Science and Computational Intelligence Institute, University of Granada, Granada, Spain
| | - Abbas Khosravi
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Geelong, VIC, Australia
| | - Sai Ho Ling
- Faculty of Engineering and IT, University of Technology Sydney (UTS), Ultimo, NSW, Australia
| | - Abdulhamit Subasi
- Faculty of Medicine, Institute of Biomedicine, University of Turku, Turku, Finland
- Department of Computer Science, College of Engineering, Effat University, Jeddah, Saudi Arabia
| | - Roohallah Alizadehsani
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Geelong, VIC, Australia
| | - Juan M. Gorriz
- Data Science and Computational Intelligence Institute, University of Granada, Granada, Spain
| | - Sara A. Abdulla
- Neurological Disorders Research Center, Qatar Biomedical Research Institute, Hamad Bin Khalifa University, Qatar Foundation, Doha, Qatar
| | - U. Rajendra Acharya
- Ngee Ann Polytechnic, Singapore, Singapore
- Department of Biomedical Informatics and Medical Engineering, Asia University, Taichung, Taiwan
- Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Sciences, Singapore, Singapore
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29
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Kralikova I, Babusiak B, Smondrk M. EEG-Based Person Identification during Escalating Cognitive Load. SENSORS (BASEL, SWITZERLAND) 2022; 22:7154. [PMID: 36236268 PMCID: PMC9572021 DOI: 10.3390/s22197154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Revised: 09/16/2022] [Accepted: 09/17/2022] [Indexed: 06/16/2023]
Abstract
With the development of human society, there is an increasing importance for reliable person identification and authentication to protect a person's material and intellectual property. Person identification based on brain signals has captured substantial attention in recent years. These signals are characterized by original patterns for a specific person and are capable of providing security and privacy of an individual in biometric identification. This study presents a biometric identification method based on a novel paradigm with accrual cognitive brain load from relaxing with eyes closed to the end of a serious game, which includes three levels with increasing difficulty. The used database contains EEG data from 21 different subjects. Specific patterns of EEG signals are recognized in the time domain and classified using a 1D Convolutional Neural Network proposed in the MATLAB environment. The ability of person identification based on individual tasks corresponding to a given degree of load and their fusion are examined by 5-fold cross-validation. Final accuracies of more than 99% and 98% were achieved for individual tasks and task fusion, respectively. The reduction of EEG channels is also investigated. The results imply that this approach is suitable to real applications.
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30
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Shoeibi A, Moridian P, Khodatars M, Ghassemi N, Jafari M, Alizadehsani R, Kong Y, Gorriz JM, Ramírez J, Khosravi A, Nahavandi S, Acharya UR. An overview of deep learning techniques for epileptic seizures detection and prediction based on neuroimaging modalities: Methods, challenges, and future works. Comput Biol Med 2022; 149:106053. [DOI: 10.1016/j.compbiomed.2022.106053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2022] [Revised: 08/17/2022] [Accepted: 08/17/2022] [Indexed: 02/01/2023]
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31
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Mughal NE, Khan MJ, Khalil K, Javed K, Sajid H, Naseer N, Ghafoor U, Hong KS. EEG-fNIRS-based hybrid image construction and classification using CNN-LSTM. Front Neurorobot 2022; 16:873239. [PMID: 36119719 PMCID: PMC9472125 DOI: 10.3389/fnbot.2022.873239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Accepted: 07/20/2022] [Indexed: 11/13/2022] Open
Abstract
The constantly evolving human–machine interaction and advancement in sociotechnical systems have made it essential to analyze vital human factors such as mental workload, vigilance, fatigue, and stress by monitoring brain states for optimum performance and human safety. Similarly, brain signals have become paramount for rehabilitation and assistive purposes in fields such as brain–computer interface (BCI) and closed-loop neuromodulation for neurological disorders and motor disabilities. The complexity, non-stationary nature, and low signal-to-noise ratio of brain signals pose significant challenges for researchers to design robust and reliable BCI systems to accurately detect meaningful changes in brain states outside the laboratory environment. Different neuroimaging modalities are used in hybrid settings to enhance accuracy, increase control commands, and decrease the time required for brain activity detection. Functional near-infrared spectroscopy (fNIRS) and electroencephalography (EEG) measure the hemodynamic and electrical activity of the brain with a good spatial and temporal resolution, respectively. However, in hybrid settings, where both modalities enhance the output performance of BCI, their data compatibility due to the huge discrepancy between their sampling rate and the number of channels remains a challenge for real-time BCI applications. Traditional methods, such as downsampling and channel selection, result in important information loss while making both modalities compatible. In this study, we present a novel recurrence plot (RP)-based time-distributed convolutional neural network and long short-term memory (CNN-LSTM) algorithm for the integrated classification of fNIRS EEG for hybrid BCI applications. The acquired brain signals are first projected into a non-linear dimension with RPs and fed into the CNN to extract essential features without performing any downsampling. Then, LSTM is used to learn the chronological features and time-dependence relation to detect brain activity. The average accuracies achieved with the proposed model were 78.44% for fNIRS, 86.24% for EEG, and 88.41% for hybrid EEG-fNIRS BCI. Moreover, the maximum accuracies achieved were 85.9, 88.1, and 92.4%, respectively. The results confirm the viability of the RP-based deep-learning algorithm for successful BCI systems.
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Affiliation(s)
- Nabeeha Ehsan Mughal
- School of Mechanical and Manufacturing Engineering, National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Muhammad Jawad Khan
- School of Mechanical and Manufacturing Engineering, National University of Sciences and Technology (NUST), Islamabad, Pakistan
- National Center of Artificial Intelligence (NCAI) – NUST, Islamabad, Pakistan
| | - Khurram Khalil
- School of Mechanical and Manufacturing Engineering, National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Kashif Javed
- School of Mechanical and Manufacturing Engineering, National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Hasan Sajid
- School of Mechanical and Manufacturing Engineering, National University of Sciences and Technology (NUST), Islamabad, Pakistan
- National Center of Artificial Intelligence (NCAI) – NUST, Islamabad, Pakistan
| | - Noman Naseer
- Department of Mechatronics and Biomedical Engineering, Air University, Islamabad, Pakistan
| | - Usman Ghafoor
- School of Mechanical Engineering, Pusan National University, Busan, South Korea
| | - Keum-Shik Hong
- School of Mechanical Engineering, Pusan National University, Busan, South Korea
- *Correspondence: Keum-Shik Hong
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32
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Fang L, Qiao H. Diabetic retinopathy classification using a novel DAG network based on multi-feature of fundus images. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103810] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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33
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Tiwary T, Mahapatra RP. An accurate generation of image captions for blind people using extended convolutional atom neural network. MULTIMEDIA TOOLS AND APPLICATIONS 2022; 82:3801-3830. [PMID: 35855372 PMCID: PMC9283099 DOI: 10.1007/s11042-022-13443-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/05/2021] [Revised: 02/15/2022] [Accepted: 07/02/2022] [Indexed: 06/15/2023]
Abstract
Recently, the progress on image understanding and AIC (Automatic Image Captioning) has attracted lots of researchers to make use of AI (Artificial Intelligence) models to assist the blind people. AIC integrates the principle of both computer vision and NLP (Natural Language Processing) to generate automatic language descriptions in relation to the image observed. This work presents a new assistive technology based on deep learning which helps the blind people to distinguish the food items in online grocery shopping. The proposed AIC model involves the following steps such as Data Collection, Non-captioned image selection, Extraction of appearance, texture features and Generation of automatic image captions. Initially, the data is collected from two public sources and the selection of non-captioned images are done using the ARO (Adaptive Rain Optimization). Next, the appearance feature is extracted using SDM (Spatial Derivative and Multi-scale) approach and WPLBP (Weighted Patch Local Binary Pattern) is used in the extraction of texture features. Finally, the captions are automatically generated using ECANN (Extended Convolutional Atom Neural Network). ECANN model combines the CNN (Convolutional Neural Network) and LSTM (Long Short-Term Memory) architectures to perform the caption reusable system to select the most accurate caption. The loss in the ECANN architecture is minimized using AAS (Adaptive Atom Search) Optimization algorithm. The implementation tool used is PYTHON and the dataset used for the analysis are Grocery datasets (Freiburg Groceries and Grocery Store Dataset). The proposed ECANN model acquired accuracy (99.46%) on Grocery Store Dataset and (99.32%) accuracy on Freiburg Groceries dataset. Thus, the performance of the proposed ECANN model is compared with other existing models to verify the supremacy of the proposed work over the other existing works.
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Affiliation(s)
- Tejal Tiwary
- Department of Computer Science and Engineering, SRMIST, NCR Campus, Ghaziabad, India
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Sadeghi D, Shoeibi A, Ghassemi N, Moridian P, Khadem A, Alizadehsani R, Teshnehlab M, Gorriz JM, Khozeimeh F, Zhang YD, Nahavandi S, Acharya UR. An overview of artificial intelligence techniques for diagnosis of Schizophrenia based on magnetic resonance imaging modalities: Methods, challenges, and future works. Comput Biol Med 2022; 146:105554. [DOI: 10.1016/j.compbiomed.2022.105554] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 04/11/2022] [Accepted: 04/11/2022] [Indexed: 12/21/2022]
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Rath A, Mishra D, Panda G, Pal M. Development and assessment of machine learning based heart disease detection using imbalanced heart sound signal. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103730] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Abstract
In brain–computer interfaces (BCIs), it is crucial to process brain signals to improve the accuracy of the classification of motor movements. Machine learning (ML) algorithms such as artificial neural networks (ANNs), linear discriminant analysis (LDA), decision tree (D.T.), K-nearest neighbor (KNN), naive Bayes (N.B.), and support vector machine (SVM) have made significant progress in classification issues. This paper aims to present a signal processing analysis of electroencephalographic (EEG) signals among different feature extraction techniques to train selected classification algorithms to classify signals related to motor movements. The motor movements considered are related to the left hand, right hand, both fists, feet, and relaxation, making this a multiclass problem. In this study, nine ML algorithms were trained with a dataset created by the feature extraction of EEG signals.The EEG signals of 30 Physionet subjects were used to create a dataset related to movement. We used electrodes C3, C1, CZ, C2, and C4 according to the standard 10-10 placement. Then, we extracted the epochs of the EEG signals and applied tone, amplitude levels, and statistical techniques to obtain the set of features. LabVIEW™2015 version custom applications were used for reading the EEG signals; for channel selection, noise filtering, band selection, and feature extraction operations; and for creating the dataset. MATLAB 2021a was used for training, testing, and evaluating the performance metrics of the ML algorithms. In this study, the model of Medium-ANN achieved the best performance, with an AUC average of 0.9998, Cohen’s Kappa coefficient of 0.9552, a Matthews correlation coefficient of 0.9819, and a loss of 0.0147. These findings suggest the applicability of our approach to different scenarios, such as implementing robotic prostheses, where the use of superficial features is an acceptable option when resources are limited, as in embedded systems or edge computing devices.
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Zhu Z, Lu S, Wang SH, Gorriz JM, Zhang YD. DSNN: A DenseNet-Based SNN for Explainable Brain Disease Classification. Front Syst Neurosci 2022; 16:838822. [PMID: 35720439 PMCID: PMC9204288 DOI: 10.3389/fnsys.2022.838822] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2021] [Accepted: 04/25/2022] [Indexed: 12/20/2022] Open
Abstract
Aims: Brain diseases refer to intracranial tissue and organ inflammation, vascular diseases, tumors, degeneration, malformations, genetic diseases, immune diseases, nutritional and metabolic diseases, poisoning, trauma, parasitic diseases, etc. Taking Alzheimer’s disease (AD) as an example, the number of patients dramatically increases in developed countries. By 2025, the number of elderly patients with AD aged 65 and over will reach 7.1 million, an increase of nearly 29% over the 5.5 million patients of the same age in 2018. Unless medical breakthroughs are made, AD patients may increase from 5.5 million to 13.8 million by 2050, almost three times the original. Researchers have focused on developing complex machine learning (ML) algorithms, i.e., convolutional neural networks (CNNs), containing millions of parameters. However, CNN models need many training samples. A small number of training samples in CNN models may lead to overfitting problems. With the continuous research of CNN, other networks have been proposed, such as randomized neural networks (RNNs). Schmidt neural network (SNN), random vector functional link (RVFL), and extreme learning machine (ELM) are three types of RNNs.Methods: We propose three novel models to classify brain diseases to cope with these problems. The proposed models are DenseNet-based SNN (DSNN), DenseNet-based RVFL (DRVFL), and DenseNet-based ELM (DELM). The backbone of the three proposed models is the pre-trained “customize” DenseNet. The modified DenseNet is fine-tuned on the empirical dataset. Finally, the last five layers of the fine-tuned DenseNet are substituted by SNN, ELM, and RVFL, respectively.Results: Overall, the DSNN gets the best performance among the three proposed models in classification performance. We evaluate the proposed DSNN by five-fold cross-validation. The accuracy, sensitivity, specificity, precision, and F1-score of the proposed DSNN on the test set are 98.46% ± 2.05%, 100.00% ± 0.00%, 85.00% ± 20.00%, 98.36% ± 2.17%, and 99.16% ± 1.11%, respectively. The proposed DSNN is compared with restricted DenseNet, spiking neural network, and other state-of-the-art methods. Finally, our model obtains the best results among all models.Conclusions: DSNN is an effective model for classifying brain diseases.
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Affiliation(s)
- Ziquan Zhu
- School of Computing and Mathematical Sciences, University of Leicester, East Midlands, United Kingdom
| | - Siyuan Lu
- School of Computing and Mathematical Sciences, University of Leicester, East Midlands, United Kingdom
| | - Shui-Hua Wang
- School of Computing and Mathematical Sciences, University of Leicester, East Midlands, United Kingdom
- School of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China
- *Correspondence: Shui-Hua Wang Juan Manuel Gorriz Yu-Dong Zhang
| | - Juan Manuel Gorriz
- Department of Signal Theory, Networking and Communications, University of Granada, Granada, Spain
- *Correspondence: Shui-Hua Wang Juan Manuel Gorriz Yu-Dong Zhang
| | - Yu-Dong Zhang
- School of Computing and Mathematical Sciences, University of Leicester, East Midlands, United Kingdom
- School of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China
- Guangxi Key Laboratory of Trusted Software, Guilin University of Electronic Technology, Guilin, China
- *Correspondence: Shui-Hua Wang Juan Manuel Gorriz Yu-Dong Zhang
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Diagnostics of Articular Cartilage Damage Based on Generated Acoustic Signals Using ANN—Part II: Patellofemoral Joint. SENSORS 2022; 22:s22103765. [PMID: 35632174 PMCID: PMC9146478 DOI: 10.3390/s22103765] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 05/10/2022] [Accepted: 05/15/2022] [Indexed: 12/04/2022]
Abstract
Cartilage loss due to osteoarthritis (OA) in the patellofemoral joint provokes pain, stiffness, and restriction of joint motion, which strongly reduces quality of life. Early diagnosis is essential for prolonging painless joint function. Vibroarthrography (VAG) has been proposed in the literature as a safe, noninvasive, and reproducible tool for cartilage evaluation. Until now, however, there have been no strict protocols for VAG acquisition especially in regard to differences between the patellofemoral and tibiofemoral joints. The purpose of this study was to evaluate the proposed examination and acquisition protocol for the patellofemoral joint, as well as to determine the optimal examination protocol to obtain the best diagnostic results. Thirty-four patients scheduled for knee surgery due to cartilage lesions were enrolled in the study and compared with 33 healthy individuals in the control group. VAG acquisition was performed prior to surgery, and cartilage status was evaluated during the surgery as a reference point. Both closed (CKC) and open (OKC) kinetic chains were assessed during VAG. The selection of the optimal signal measures was performed using a neighborhood component analysis (NCA) algorithm. The classification was performed using multilayer perceptron (MLP) and radial basis function (RBF) neural networks. The classification using artificial neural networks was performed for three variants: I. open kinetic chain, II. closed kinetic chain, and III. open and closed kinetic chain. The highest diagnostic accuracy was obtained for variants I and II for the RBF 9-35-2 and MLP 10-16-2 networks, respectively, achieving a classification accuracy of 98.53, a sensitivity of 0.958, and a specificity of 1. For variant III, a diagnostic accuracy of 97.79 was obtained with a sensitivity and specificity of 0.978 for MLP 8-3-2. This indicates a possible simplification of the examination protocol to single kinetic chain analyses.
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Khaldi A, Kafi MR, Moad MS. Wrapping based curvelet transform approach for ECG watermarking in telemedicine application. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103540] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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40
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Nayak G, Padhy N, Mishra TK. 2D-DOST for seizure identification from brain MRI during pregnancy using KRVFL. HEALTH AND TECHNOLOGY 2022. [DOI: 10.1007/s12553-022-00669-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Sehar U, Naseem ML. How deep learning is empowering semantic segmentation: Traditional and deep learning techniques for semantic segmentation: A comparison. MULTIMEDIA TOOLS AND APPLICATIONS 2022; 81:30519-30544. [PMID: 35411201 PMCID: PMC8986028 DOI: 10.1007/s11042-022-12821-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 01/28/2022] [Accepted: 03/09/2022] [Indexed: 06/14/2023]
Abstract
Semantic segmentation involves extracting meaningful information from images or input from a video or recording frames. It is the way to perform the extraction by checking pixels by pixel using a classification approach. It gives us more accurate and fine details from the data we need for further evaluation. Formerly, we had a few techniques based on some unsupervised learning perspectives or some conventional ways to do some image processing tasks. With the advent of time, techniques are improving, and we now have more improved and efficient methods for segmentation. Image segmentation is slightly simpler than semantic segmentation because of the technical perspective as semantic segmentation is pixels based. After that, the detected part based on the label will be masked and refer to the masked objects based on the classes we have defined with a relevant class name and the designated color. In this paper, we have reviewed almost all the supervised and unsupervised learning algorithms from scratch to advanced and more efficient algorithms that have been done for semantic segmentation. As far as deep learning is concerned, we have many techniques already developed until now. We have studied around 120 papers in this research area. We have concluded how deep learning is helping in solving the critical issues of semantic segmentation and gives us more efficient results. We have reviewed and comprehensively studied different surveys on semantic segmentation, specifically using deep learning.
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Affiliation(s)
- Uroosa Sehar
- University of Engineering and Technology, Taxila, Pakistan
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Su CH, Chung PC, Lin SF, Tsai HW, Yang TL, Su YC. Multi-Scale Attention Convolutional Network for Masson Stained Bile Duct Segmentation from Liver Pathology Images. SENSORS (BASEL, SWITZERLAND) 2022; 22:s22072679. [PMID: 35408293 PMCID: PMC9003085 DOI: 10.3390/s22072679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Revised: 03/24/2022] [Accepted: 03/29/2022] [Indexed: 05/07/2023]
Abstract
In clinical practice, the Ishak Score system would be adopted to perform the evaluation of the grading and staging of hepatitis according to whether portal areas have fibrous expansion, bridging with other portal areas, or bridging with central veins. Based on these staging criteria, it is necessary to identify portal areas and central veins when performing the Ishak Score staging. The bile ducts have variant types and are very difficult to be detected under a single magnification, hence pathologists must observe bile ducts at different magnifications to obtain sufficient information. This pathologic examinations in routine clinical practice, however, would result in the labor intensive and expensive examination process. Therefore, the automatic quantitative analysis for pathologic examinations has had an increased demand and attracted significant attention recently. A multi-scale inputs of attention convolutional network is proposed in this study to simulate pathologists' examination procedure for observing bile ducts under different magnifications in liver biopsy. The proposed multi-scale attention network integrates cell-level information and adjacent structural feature information for bile duct segmentation. In addition, the attention mechanism of proposed model enables the network to focus the segmentation task on the input of high magnification, reducing the influence from low magnification input, but still helps to provide wider field of surrounding information. In comparison with existing models, including FCN, U-Net, SegNet, DeepLabv3 and DeepLabv3-plus, the experimental results demonstrated that the proposed model improved the segmentation performance on Masson bile duct segmentation task with 72.5% IOU and 84.1% F1-score.
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Affiliation(s)
- Chun-Han Su
- Institute of Computer and Communication Engineering, National Cheng Kung University, Tainan City 701, Taiwan; (C.-H.S.); (P.-C.C.)
| | - Pau-Choo Chung
- Institute of Computer and Communication Engineering, National Cheng Kung University, Tainan City 701, Taiwan; (C.-H.S.); (P.-C.C.)
| | - Sheng-Fung Lin
- Division of Hematology and Oncology, Department of Internal Medicine, E-Da Hospital, Kaohsiung 824, Taiwan;
| | - Hung-Wen Tsai
- Department of Pathology, National Cheng Kung University Hospital, Tainan City 704, Taiwan;
| | - Tsung-Lung Yang
- Kaohsiung Veterans General Hospital, Kaohsiung 813414, Taiwan;
| | - Yu-Chieh Su
- Division of Hematology and Oncology, Department of Internal Medicine, E-Da Hospital, Kaohsiung 824, Taiwan;
- School of Medicine, I-Shou University, Kaohsiung 824, Taiwan
- Correspondence:
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Aydemir E, Dogan S, Baygin M, Ooi CP, Barua PD, Tuncer T, Acharya UR. CGP17Pat: Automated Schizophrenia Detection Based on a Cyclic Group of Prime Order Patterns Using EEG Signals. Healthcare (Basel) 2022; 10:healthcare10040643. [PMID: 35455821 PMCID: PMC9027158 DOI: 10.3390/healthcare10040643] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 03/18/2022] [Accepted: 03/25/2022] [Indexed: 11/16/2022] Open
Abstract
Background and Purpose: Machine learning models have been used to diagnose schizophrenia. The main purpose of this research is to introduce an effective schizophrenia hand-modeled classification method. Method: A public electroencephalogram (EEG) signal data set was used in this work, and an automated schizophrenia detection model is presented using a cyclic group of prime order with a modulo 17 operator. Therefore, the presented feature extractor was named as the cyclic group of prime order pattern, CGP17Pat. Using the proposed CGP17Pat, a new multilevel feature extraction model is presented. To choose a highly distinctive feature, iterative neighborhood component analysis (INCA) was used, and these features were classified using k-nearest neighbors (kNN) with the 10-fold cross-validation and leave-one-subject-out (LOSO) validation techniques. Finally, iterative hard majority voting was employed in the last phase to obtain channel-wise results, and the general results were calculated. Results: The presented CGP17Pat-based EEG classification model attained 99.91% accuracy employing 10-fold cross-validation and 84.33% accuracy using the LOSO strategy. Conclusions: The findings and results depicted the high classification ability of the presented cryptologic pattern for the data set used.
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Affiliation(s)
- Emrah Aydemir
- Department of Management Information Systems, Management Faculty, Sakarya University, Sakarya 54050, Turkey;
| | - Sengul Dogan
- Department of Digital Forensics Engineering, College of Technology, Firat University, Elazig 23119, Turkey;
- Correspondence: ; Tel.: +90-424-2370000-7634
| | - Mehmet Baygin
- Department of Computer Engineering, College of Engineering, Ardahan University, Ardahan 75000, Turkey;
| | - Chui Ping Ooi
- School of Science and Technology, Singapore University of Social Sciences, Singapore 599494, Singapore;
| | - Prabal Datta Barua
- School of Business (Information System), University of Southern Queensland, Toowoomba, QLD 4350, Australia;
- Faculty of Engineering and Information Technology, University of Technology Sydney, Sydney, NSW 2007, Australia
| | - Turker Tuncer
- Department of Digital Forensics Engineering, College of Technology, Firat University, Elazig 23119, Turkey;
| | - U. Rajendra Acharya
- Ngee Ann Polytechnic, Department of Electronics and Computer Engineering, Singapore 599489, Singapore;
- Department of Biomedical Engineering, School of Science and Technology, SUSS University, Singapore 599491, Singapore
- Department of Biomedical Informatics and Medical Engineering, Asia University, Taichung 413, Taiwan
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Abstract
This paper proposes a novel robust latent common subspace learning (RLCSL) method by integrating low-rank and sparse constraints into a joint learning framework. Specifically, we transform the data from source and target domains into a latent common subspace to perform the data reconstruction, i.e., the transformed source data is used to reconstruct the transformed target data. We impose joint low-rank and sparse constraints on the reconstruction coefficient matrix which can achieve following objectives: (1) the data from different domains can be interlaced by using the low-rank constraint; (2) the data from different domains but with the same label can be aligned together by using the sparse constraint. In this way, the new feature representation in the latent common subspace is discriminative and transferable. To learn a suitable classifier, we also integrate the classifier learning and feature representation learning into a unified objective and thus the high-level semantics label (data label) is fully used to guide the learning process of these two tasks. Experiments are conducted on diverse data sets for image, object, and document classifications, and encouraging experimental results show that the proposed method outperforms some state-of-the-arts methods.
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Attention Measurement of an Autism Spectrum Disorder User Using EEG Signals: A Case Study. MATHEMATICAL AND COMPUTATIONAL APPLICATIONS 2022. [DOI: 10.3390/mca27020021] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Autism Spectrum Disorder (ASD) is a neurodevelopmental life condition characterized by problems with social interaction, low verbal and non-verbal communication skills, and repetitive and restricted behavior. People with ASD usually have variable attention levels because they have hypersensitivity and large amounts of environmental information are a problem for them. Attention is a process that occurs at the cognitive level and allows us to orient ourselves towards relevant stimuli, ignoring those that are not, and act accordingly. This paper presents a methodology based on electroencephalographic (EEG) signals for attention measurement in a 13-year-old boy diagnosed with ASD. The EEG signals are acquired with an Epoc+ Brain–Computer Interface (BCI) via the Emotiv Pro platform while developing several learning activities and using Matlab 2019a for signal processing. For this article, we propose to use electrodes F3, F4, P7, and P8. Then, we calculate the band power spectrum density to detect the Theta Relative Power (TRP), Alpha Relative Power (ARP), Beta Relative Power (BRP), Theta–Beta Ratio (TBR), Theta–Alpha Ratio (TAR), and Theta/(Alpha+Beta), which are features related to attention detection and neurofeedback. We train and evaluate several machine learning (ML) models with these features. In this study, the multi-layer perceptron neural network model (MLP-NN) has the best performance, with an AUC of 0.9299, Cohen’s Kappa coefficient of 0.8597, Matthews correlation coefficient of 0.8602, and Hamming loss of 0.0701. These findings make it possible to develop better learning scenarios according to the person’s needs with ASD. Moreover, it makes it possible to obtain quantifiable information on their progress to reinforce the perception of the teacher or therapist.
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Shoeibi A, Ghassemi N, Khodatars M, Moridian P, Alizadehsani R, Zare A, Khosravi A, Subasi A, Rajendra Acharya U, Gorriz JM. Detection of epileptic seizures on EEG signals using ANFIS classifier, autoencoders and fuzzy entropies. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103417] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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Design of a Diagnostic System for Patient Recovery Based on Deep Learning Image Processing: For the Prevention of Bedsores and Leg Rehabilitation. Diagnostics (Basel) 2022; 12:diagnostics12020273. [PMID: 35204364 PMCID: PMC8871307 DOI: 10.3390/diagnostics12020273] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 01/20/2022] [Accepted: 01/20/2022] [Indexed: 11/17/2022] Open
Abstract
Worldwide COVID-19 infections have caused various problems throughout different countries. In the case of Korea, problems related to the demand for medical care concerning wards and doctors are serious, which were already slowly worsening problems in Korea before the COVID-19 pandemic. In this paper, we propose the direction of developing a system by combining artificial intelligence technology with limited areas that do not require high expertise in the rehabilitation medical field that should be improved in Korea through the prevention of bedsores and leg rehabilitation methods. Regarding the introduction of artificial intelligence technology, medical and related laws and regulations were quite limited, so the actual needs of domestic rehabilitation doctors and advice on the hospital environment were obtained. Satisfaction with the test content was high, the degree of provision of important medical data was 95%, and the angular error was within 5 degrees and suitable for recovery confirmation.
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Automatic Diagnosis of Epileptic Seizures in EEG Signals Using Fractal Dimension Features and Convolutional Autoencoder Method. BIG DATA AND COGNITIVE COMPUTING 2021. [DOI: 10.3390/bdcc5040078] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
This paper proposes a new method for epileptic seizure detection in electroencephalography (EEG) signals using nonlinear features based on fractal dimension (FD) and a deep learning (DL) model. Firstly, Bonn and Freiburg datasets were used to perform experiments. The Bonn dataset consists of binary and multi-class classification problems, and the Freiburg dataset consists of two-class EEG classification problems. In the preprocessing step, all datasets were prepossessed using a Butterworth band pass filter with 0.5–60 Hz cut-off frequency. Then, the EEG signals of the datasets were segmented into different time windows. In this section, dual-tree complex wavelet transform (DT-CWT) was used to decompose the EEG signals into the different sub-bands. In the following section, in order to feature extraction, various FD techniques were used, including Higuchi (HFD), Katz (KFD), Petrosian (PFD), Hurst exponent (HE), detrended fluctuation analysis (DFA), Sevcik, box counting (BC), multiresolution box-counting (MBC), Margaos-Sun (MSFD), multifractal DFA (MF-DFA), and recurrence quantification analysis (RQA). In the next step, the minimum redundancy maximum relevance (mRMR) technique was used for feature selection. Finally, the k-nearest neighbors (KNN), support vector machine (SVM), and convolutional autoencoder (CNN-AE) were used for the classification step. In the classification step, the K-fold cross-validation with k = 10 was employed to demonstrate the effectiveness of the classifier methods. The experiment results show that the proposed CNN-AE method achieved an accuracy of 99.736% and 99.176% for the Bonn and Freiburg datasets, respectively.
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