1
|
Hussain I, Irshad M, Hussain A, Qadir M, Mehmood A, Rahman M, Alrefaei AF, Almutairi MH, Ali S, Hamayun M. Phosphate solubilizing Aspergillus Niger PH1 ameliorates growth and alleviates lead stress in maize through improved photosynthetic and antioxidant response. BMC PLANT BIOLOGY 2024; 24:642. [PMID: 38972980 PMCID: PMC11229273 DOI: 10.1186/s12870-024-05361-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Accepted: 07/01/2024] [Indexed: 07/09/2024]
Abstract
Among the several threats to humanity by anthropogenic activities, contamination of the environment by heavy metals is of great concern. Upon entry into the food chain, these metals cause serious hazards to plants and other organisms including humans. Use of microbes for bioremediation of the soil and stress mitigation in plants are among the preferred strategies to provide an efficient, cost-effective, eco-friendly solution of the problem. The current investigation is an attempt in this direction where fungal strain PH1 was isolated from the rhizosphere of Parthenium hysterophorus which was identified as Aspergillus niger by sequence homology of the ITS 1 and ITS 4 regions of the rRNA. The strain was tested for its effect on growth and biochemical parameters as reflection of its potential to mitigate Pb stress in Zea mays exposed to 100, 200 and 500 µg of Pb/g of soil. In the initial screening, it was revealed that the strain has the ability to tolerate lead stress, solubilize insoluble phosphate and produce plant growth promoting hormones (IAA and SA) and other metabolites like phenolics, flavonoids, sugar, protein and lipids. Under 500 µg of Pb/g of soil, Z. mays exhibited significant growth retardation with a reduction of 31% in root length, 30.5% in shoot length, 57.5% in fresh weight and 45.2% in dry weight as compared to control plants. Inoculation of A. niger to Pb treated plants not only restored root and shoot length, rather promoted it to a level significantly higher than the control plants. Association of the strain modulated the physio-hormonal attributes of maize plants that resulted in their better growth which indicated a state of low stress. Additionally, the strain boosted the antioxidant defence system of the maize there by causing a significant reduction in the ascorbic acid peroxidase (1.5%), catalase (19%) and 1,1-diphenyl-2 picrylhydrazyl (DPPH) radical scavenging activity (33.3%), indicating a lower stress condition as compared to their non-inoculated stressed plants. Based on current evidence, this strain can potentially be used as a biofertilizer for Pb-contaminated sites where it will improve overall plant health with the hope of achieving better biological and agricultural yields.
Collapse
Affiliation(s)
- Iqbal Hussain
- Department of Botany, Abdul Wali Khan University, Mardan, 23200, Pakistan
| | - Muhammad Irshad
- Department of Botany, Abdul Wali Khan University, Mardan, 23200, Pakistan.
| | - Anwar Hussain
- Department of Botany, Abdul Wali Khan University, Mardan, 23200, Pakistan
| | - Muhammad Qadir
- Department of Botany, Abdul Wali Khan University, Mardan, 23200, Pakistan
| | - Asif Mehmood
- Institute of Biological Sciences Sarhad University, Peshawar, Pakistan
| | - Muneebur Rahman
- Department of Botany, Abdul Wali Khan University, Mardan, 23200, Pakistan
| | | | - Mikhlid H Almutairi
- Department of Zoology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Sajid Ali
- Department of Horticulture and Life Science, Yeungnam University, Gyeongsan, Republic of Korea.
| | - Muhammad Hamayun
- Department of Botany, Abdul Wali Khan University, Mardan, 23200, Pakistan
| |
Collapse
|
2
|
Kumar D, Ali M, Sharma N, Sharma R, Manhas RK, Ohri P. Unboxing PGPR-mediated management of abiotic stress and environmental cleanup: what lies inside? ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:47423-47460. [PMID: 38992305 DOI: 10.1007/s11356-024-34157-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 06/24/2024] [Indexed: 07/13/2024]
Abstract
Abiotic stresses including heavy metal toxicity, drought, salt and temperature extremes disrupt the plant growth and development and lowers crop output. Presence of environmental pollutants further causes plants suffering and restrict their ability to thrive. Overuse of chemical fertilizers to reduce the negative impact of these stresses is deteriorating the environment and induces various secondary stresses to plants. Therefore, an environmentally friendly strategy like utilizing plant growth-promoting rhizobacteria (PGPR) is a promising way to lessen the negative effects of stressors and to boost plant growth in stressful conditions. These are naturally occurring inhabitants of various environments, an essential component of the natural ecosystem and have remarkable abilities to promote plant growth. Furthermore, multifarious role of PGPR has recently been widely exploited to restore natural soil against a range of contaminants and to mitigate abiotic stress. For instance, PGPR may mitigate metal phytotoxicity by boosting metal translocation inside the plant and changing the metal bioavailability in the soil. PGPR have been also reported to mitigate other abiotic stress and to degrade environmental contaminants remarkably. Nevertheless, despite the substantial quantity of information that has been produced in the meantime, there has not been much advancement in either the knowledge of the processes behind the alleged positive benefits or in effective yield improvements by PGPR inoculation. This review focuses on addressing the progress accomplished in understanding various mechanisms behind the protective benefits of PGPR against a variety of abiotic stressors and in environmental cleanups and identifying the cause of the restricted applicability in real-world.
Collapse
Affiliation(s)
- Deepak Kumar
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Mohd Ali
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Nandni Sharma
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Roohi Sharma
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Rajesh Kumari Manhas
- Department of Microbiology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Puja Ohri
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India.
| |
Collapse
|
3
|
Qadir M, Hussain A, Shah M, Hamayun M, Al-Huqail AA, Iqbal A, Ali S. Improving sunflower growth and arsenic bioremediation in polluted environments: Insights from ecotoxicology and sustainable mitigation approaches. Heliyon 2024; 10:e33078. [PMID: 38988560 PMCID: PMC11234106 DOI: 10.1016/j.heliyon.2024.e33078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Revised: 05/25/2024] [Accepted: 06/13/2024] [Indexed: 07/12/2024] Open
Abstract
The issue of arsenic (As) contamination in the environment has become a critical concern, impacting both human health and ecological equilibrium. Addressing this challenge requires a comprehensive strategy encompassing water treatment technologies, regulatory measures for industrial effluents, and the implementation of sustainable agricultural practices. In this study, diverse strategies were explored to enhance As accumulation in the presence of Acinetobacter bouvetii while safeguarding the host from the toxic effects of arsenate exposure. The sunflower seedlings associated with A. bouvetii demonstrated a favorable relative growth rate (RGR) and net assimilation rate (NAR) even less than 100 ppm of As stress. Remarkably, the NAR and RGR of A. bouvetii-associated seedlings outperformed those of control seedlings cultivated without A. bouvetii in As-free conditions. Additionally, a markedly greater buildup of bio-transformed As was observed in A. bouvetii-associated seedlings (P = 0.05). An intriguing observation was the normal levels of reactive oxygen species (ROS) in A. bouvetii-associated seedlings, along with elevated activities of key enzymatic antioxidants like catalases (CAT), ascorbate peroxidase (APX), superoxide dismutase (SOD), and peroxidases (POD), along with non-enzymatic antioxidants (phenols and flavonoids). This coordinated antioxidant defense system likely contributed to the improved survival and growth of the host plant species amidst As stress. A. bouvetii not only augmented the growth of the host plants but also facilitated the uptake of bio-transformed As in the contaminated medium. The rhizobacterium's modulation of various biochemical and physiological parameters indicates its role in ensuring the better survival and progression of the host plants under As stress.
Collapse
Affiliation(s)
- Muhammad Qadir
- Department of Botany, Garden Campus, Abdul Wali Khan University Mardan, Khyber Pakhtunkhwa Pakistan
| | - Anwar Hussain
- Department of Botany, Garden Campus, Abdul Wali Khan University Mardan, Khyber Pakhtunkhwa Pakistan
| | - Mohib Shah
- Department of Botany, Garden Campus, Abdul Wali Khan University Mardan, Khyber Pakhtunkhwa Pakistan
| | - Muhammad Hamayun
- Department of Botany, Garden Campus, Abdul Wali Khan University Mardan, Khyber Pakhtunkhwa Pakistan
| | - Asma A. Al-Huqail
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia
| | - Amjad Iqbal
- Department of Food Science & Technology, Garden Campus, Abdul Wali Khan University Mardan, Khyber Pakhtunkhwa Pakistan
| | - Sajid Ali
- Department of Horticulture and Life Science, Yeungnam University, Republic of Korea
| |
Collapse
|
4
|
Qadir M, Hussain A, Shah M, Hamayun M, Iqbal A, Irshad M, Ahmad A, Alrefaei AF, Ali S. Staphylococcus arlettae mediated defense mechanisms and metabolite modulation against arsenic stress in Helianthus annuus. FRONTIERS IN PLANT SCIENCE 2024; 15:1391348. [PMID: 38952849 PMCID: PMC11216036 DOI: 10.3389/fpls.2024.1391348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Accepted: 06/05/2024] [Indexed: 07/03/2024]
Abstract
Introduction Arsenate, a metalloid, acting as an analog to phosphate, has a tendency to accumulate more readily in plant species, leading to adverse effects. Methods In the current study, sunflower seedlings were exposed to 25, 50 and 100 ppm of the arsenic. Results Likewise, a notable reduction (p<0.05) was observed in the relative growth rate (RGR) by 4-folds and net assimilation rate (NAR) by 75% of Helianthus annuus when subjected to arsenic (As) stress. Nevertheless, the presence of Staphylococcus arlettae, a plant growth-promoting rhizobacterium with As tolerance, yielded an escalation in the growth of H. annuus within As-contaminated media. S. arlettae facilitated the conversion of As into a form accessible to plants, thereby, increasing its uptake and subsequent accumulation in plant tissues. S. arlettae encouraged the enzymatic antioxidant systems (Superoxide dismutase (SOD), peroxidase (POD), ascorbate peroxidase (APX) and catalase (CAT)) and non-enzymatic antioxidants (flavonoids, phenolics, and glutathione) in H. annuus seedlings following substantial As accumulation. The strain also induced the host plant to produce osmolytes like proline and sugars, mitigating water loss and maintaining cellular osmotic balance under As-induced stress. S. arlettae rectified imbalances in lignin content, reduced high malonaldehyde (MDA) levels, and minimized electrolyte leakage, thus counteracting the toxic impacts of the metal. Conclusion The strain exhibited the capability to concurrently encourage plant growth and remediate Ascontaminated growth media through 2-folds rate of biotransformation and bio-mobilization.
Collapse
Affiliation(s)
- Muhammad Qadir
- Department of Botany, Abdul Wali Khan University, Mardan, Pakistan
| | - Anwar Hussain
- Department of Botany, Abdul Wali Khan University, Mardan, Pakistan
| | - Mohib Shah
- Department of Botany, Abdul Wali Khan University, Mardan, Pakistan
| | - Muhammad Hamayun
- Department of Botany, Abdul Wali Khan University, Mardan, Pakistan
| | - Amjad Iqbal
- Department of Food Science and Technology, Abdul Wali Khan University, Mardan, Pakistan
| | - Muhammad Irshad
- Department of Botany, Abdul Wali Khan University, Mardan, Pakistan
| | - Ayaz Ahmad
- Department of Biotechnology, Abdul Wali Khan University, Mardan, Pakistan
| | | | - Sajid Ali
- Department of Horticulture and Life Science, Yeungnam University, Gyeongsan, Republic of Korea
| |
Collapse
|
5
|
Qadir M, Hussain A, Shah M, Hamayun M, Iqbal A, Irshad M, Khan ZH, Islam B, Elansary HO, Mahmoud EA, Lee IJ. Pantoea conspicua promoted sunflower growth and engulfed rhizospheric arsenate by secreting exopolysaccharide. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 201:107826. [PMID: 37331076 DOI: 10.1016/j.plaphy.2023.107826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 05/21/2023] [Accepted: 06/05/2023] [Indexed: 06/20/2023]
Abstract
A rhizobacterium, Pantoea conspicua, was examined against sunflower seedlings' growth under arsenate stress. Sunflower upon exposure to arsenate resulted in compromised growth that might be due to the accumulation of higher concentrations of arsenate and reactive oxygen species (ROS) in seedlings' tissues. The deposited arsenate led to oxidative damage and electrolyte leakage, making the sunflower seedlings vulnerable to compromise its growth and development. However, inoculation of sunflower seedlings with P. conspicua alleviated arsenate stress in host by initiating a multilayered defence mechanism. In fact, P. conspicua filtered out 75.1% of the arsenate from growth medium that were available to the plant roots in the absence of the said strain. To accomplish such activity, P. conspicua secreted exopolysaccharides as well as altered lignification in host roots. The arsenate (24.9%) that made its way to plant tissues was countered by helping the host seedlings to produce higher levels of indole acetic acid, non enzymatic antioxidants (phenolics and flavonoids) and antioxidant enzymes (catalase, ascorbte peroxidase, peroxidase, superoxide dismutase). As a result, ROS accumulation and electrolyte leakage were brought back to normal levels as observed in control seedlings. Hence, the rhizobacterium associated host seedlings achieved higher net assimilation (127.7%) and relative growth rate (113.5%) under 100 ppm of arsenate stress. The work concluded that P. conspicua alleviated arsenate stress in the host plants by imposing physical barrier as well as improving host seedlings' physiology and biochemistry.
Collapse
Affiliation(s)
- Muhammad Qadir
- Department of Botany, Garden Campus, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Anwar Hussain
- Department of Botany, Garden Campus, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan.
| | - Mohib Shah
- Department of Botany, Garden Campus, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Muhammad Hamayun
- Department of Botany, Garden Campus, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Amjad Iqbal
- Department of Food Science & Technology, Garden Campus, Abdul Wali Khan University, Mardan, Khyber, Pakhtunkhwa, Pakistan
| | - Muhammad Irshad
- Department of Botany, Garden Campus, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Zafar Hayat Khan
- Department of Agronomy, Garden Campus, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Badshah Islam
- Department of Horticulture, Garden Campus, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Hosam O Elansary
- Plant Production Department, College of Food and Agricultural Sciences, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia.
| | - Eman A Mahmoud
- Department of Food Industries, Faculty of Agriculture, Damietta University, Damietta, 34511, Egypt.
| | - In-Jung Lee
- Department of Applied Biosciences, Kyungpook National University, Daegu, 702-701, Republic of Korea
| |
Collapse
|
6
|
Ayilara MS, Adeleke BS, Babalola OO. Bioprospecting and Challenges of Plant Microbiome Research for Sustainable Agriculture, a Review on Soybean Endophytic Bacteria. MICROBIAL ECOLOGY 2023; 85:1113-1135. [PMID: 36319743 PMCID: PMC10156819 DOI: 10.1007/s00248-022-02136-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Accepted: 10/24/2022] [Indexed: 05/04/2023]
Abstract
This review evaluates oilseed crop soybean endophytic bacteria, their prospects, and challenges for sustainable agriculture. Soybean is one of the most important oilseed crops with about 20-25% protein content and 20% edible oil production. The ability of soybean root-associated microbes to restore soil nutrients enhances crop yield. Naturally, the soybean root endosphere harbors root nodule bacteria, and endophytic bacteria, which help increase the nitrogen pool and reclamation of another nutrient loss in the soil for plant nutrition. Endophytic bacteria can sustain plant growth and health by exhibiting antibiosis against phytopathogens, production of enzymes, phytohormone biosynthesis, organic acids, and secondary metabolite secretions. Considerable effort in the agricultural industry is focused on multifunctional concepts and bioprospecting on the use of bioinput from endophytic microbes to ensure a stable ecosystem. Bioprospecting in the case of this review is a systemic overview of the biorational approach to harness beneficial plant-associated microbes to ensure food security in the future. Progress in this endeavor is limited by available techniques. The use of molecular techniques in unraveling the functions of soybean endophytic bacteria can explore their use in integrated organic farming. Our review brings to light the endophytic microbial dynamics of soybeans and current status of plant microbiome research for sustainable agriculture.
Collapse
Affiliation(s)
- Modupe Stella Ayilara
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho, 2735, South Africa
| | - Bartholomew Saanu Adeleke
- Department of Biological Sciences, Microbiology Unit, Faculty of Science, Olusegun Agagu University of Science and Technology, PMB 353, Okitipupa, Nigeria
| | - Olubukola Oluranti Babalola
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho, 2735, South Africa.
| |
Collapse
|
7
|
EDTA and IAA Ameliorates Phytoextraction Potential and Growth of Sunflower by Mitigating Cu-Induced Morphological and Biochemical Injuries. Life (Basel) 2023; 13:life13030759. [PMID: 36983913 PMCID: PMC10051917 DOI: 10.3390/life13030759] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 02/08/2023] [Accepted: 03/09/2023] [Indexed: 03/14/2023] Open
Abstract
As an essential micronutrient, copper is vital for normal growth and development of plants, however, its accumulation in soil exerts a severe negative impact on the agronomic characteristics and yield of the crop plants. Phytoextraction is a low-cost method for restoring soil fertility and avoiding losses due to heavy metal contamination. We found that using EDTA and IAA together improved sunflower hyperaccumulation capacity. Sunflowers were cultivated under various levels of Cu (0 (control), 25, 50, and 75 mg/kg of soil) and treated with EDTA alone or combined with IAA. The results revealed that the amended treatment significantly enhanced the absorption and accumulation of Cu in the sunflowers. Furthermore, the various doses of Cu significantly reduced the root and shoot growth of sunflowers in a concentration-dependent manner by impairing the chlorophyll content, hormones (indole 3-acetic acid, salicylic acid, and gibberellic acid), flavonoids, phenolics, and antioxidant response. The injurious effect of Cu was reduced by the addition of EDTA alone, and the supplementation of IAA led to a significant restoration of shoot growth (~70%) and root growth (~13%) as compared to the plant treated with Cu alone. Moreover, significantly higher levels of chlorophyll content, GA3, endogenous IAA, and flavonoids were recorded, indicating the effectiveness of the treatment in ameliorating plant health. The results also showed considerable restoration of the catalase and ascorbate peroxidase activities in plants treated with EDTA and IAA. These results are suggestive that application of EDTA and IAA enhances the Cu absorption potential of sunflower and increases its tolerance to copper, which may not only serve as a better technique for phytoextraction of Cu, but also to bring Cu contaminated soil under cultivation.
Collapse
|
8
|
Qadir M, Hussain A, Shah M, Hamayun M, Iqbal A. Enhancement of chromate phytoremediation and soil reclamation potential of Brassica campestris L. by Aspergillus niger. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:9471-9482. [PMID: 36057704 DOI: 10.1007/s11356-022-22678-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Accepted: 08/18/2022] [Indexed: 06/15/2023]
Abstract
In the past decades, chromium contamination of agricultural land has become an emerging concern. For land reclamation, several strategies including bioremediation have been used. Owing the potential of hyperaccumulators, the current project aims to enhance the phytoremediation potential of Brassica campestris L. with the application of chromate tolerant endophytic fungus Aspergillus niger CSR3. when B. campestris was watered with chromate concentration (300, 500, and 1000 ppm) in the form of potassium chromate (K2CrO4), seed germination, hypocotyl length, root shoot length, and leaf area were severely reduced (p < 0.05). However, reproductive parts of the plants remained viable once initiated. Inoculation of the selected endophyte stimulated host growth, reducing the severity of the chromate stress. Interestingly, CSR3-inoculated plants accumulated 1.82-, 1.51-, and 2.16-fold greater quantities of chromate than the un-inoculated plants. To cope better with the stress, endophyte-associated host had stronger antioxidant system supported by enhanced production of nonenzymatic antioxidants (flavonoids, phenolics, and proline) and enzymatic antioxidants (SOD, CAT, APX, and POD) than the non-endophytes host plants. It may be concluded that hyperaccumulator B. campestris accumulates even higher quantities of chromate in the presence of endophytic A. niger CSR3 and tolerates elevated levels of chromate with boosted antioxidant system. Thus, hyperaccumulator host associated with heavy metal tolerant endophytic fungi can be the possible efficient way to reclaim the contaminated site from the heavy metals effectively in a short time period.
Collapse
Affiliation(s)
- Muhammad Qadir
- Department of Botany, Garden Campus, Abdul Wali Khan University, Khyber Pakhtunkhwa, Mardan, Pakistan
| | - Anwar Hussain
- Department of Botany, Garden Campus, Abdul Wali Khan University, Khyber Pakhtunkhwa, Mardan, Pakistan.
| | - Mohib Shah
- Department of Botany, Garden Campus, Abdul Wali Khan University, Khyber Pakhtunkhwa, Mardan, Pakistan
| | - Muhammad Hamayun
- Department of Botany, Garden Campus, Abdul Wali Khan University, Khyber Pakhtunkhwa, Mardan, Pakistan
| | - Amjad Iqbal
- Department of Food Science and Technology, Garden Campus, Abdul Wali Khan University, Khyber Pakhtunkhwa, Mardan, Pakistan
| |
Collapse
|
9
|
Zhao Y, Wei HM, Yuan JL, Xu L, Sun JQ. A comprehensive genomic analysis provides insights on the high environmental adaptability of Acinetobacter strains. Front Microbiol 2023; 14:1177951. [PMID: 37138596 PMCID: PMC10149724 DOI: 10.3389/fmicb.2023.1177951] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 03/28/2023] [Indexed: 05/05/2023] Open
Abstract
Acinetobacter is ubiquitous, and it has a high species diversity and a complex evolutionary pattern. To elucidate the mechanism of its high ability to adapt to various environment, 312 genomes of Acinetobacter strains were analyzed using the phylogenomic and comparative genomics methods. It was revealed that the Acinetobacter genus has an open pan-genome and strong genome plasticity. The pan-genome consists of 47,500 genes, with 818 shared by all the genomes of Acinetobacter, while 22,291 are unique genes. Although Acinetobacter strains do not have a complete glycolytic pathway to directly utilize glucose as carbon source, most of them harbored the n-alkane-degrading genes alkB/alkM (97.1% of tested strains) and almA (96.7% of tested strains), which were responsible for medium-and long-chain n-alkane terminal oxidation reaction, respectively. Most Acinetobacter strains also have catA (93.3% of tested strains) and benAB (92.0% of tested strains) genes that can degrade the aromatic compounds catechol and benzoic acid, respectively. These abilities enable the Acinetobacter strains to easily obtain carbon and energy sources from their environment for survival. The Acinetobacter strains can manage osmotic pressure by accumulating potassium and compatible solutes, including betaine, mannitol, trehalose, glutamic acid, and proline. They respond to oxidative stress by synthesizing superoxide dismutase, catalase, disulfide isomerase, and methionine sulfoxide reductase that repair the damage caused by reactive oxygen species. In addition, most Acinetobacter strains contain many efflux pump genes and resistance genes to manage antibiotic stress and can synthesize a variety of secondary metabolites, including arylpolyene, β-lactone and siderophores among others, to adapt to their environment. These genes enable Acinetobacter strains to survive extreme stresses. The genome of each Acinetobacter strain contained different numbers of prophages (0-12) and genomic islands (GIs) (6-70), and genes related to antibiotic resistance were found in the GIs. The phylogenetic analysis revealed that the alkM and almA genes have a similar evolutionary position with the core genome, indicating that they may have been acquired by vertical gene transfer from their ancestor, while catA, benA, benB and the antibiotic resistance genes could have been acquired by horizontal gene transfer from the other organisms.
Collapse
Affiliation(s)
- Yang Zhao
- Lab for Microbial Resources, School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Hua-Mei Wei
- Lab for Microbial Resources, School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Jia-Li Yuan
- Lab for Microbial Resources, School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Lian Xu
- Jiangsu Key Lab for Organic Solid Waste Utilization, Educational Ministry Engineering Center of Resource-Saving Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing, China
| | - Ji-Quan Sun
- Lab for Microbial Resources, School of Ecology and Environment, Inner Mongolia University, Hohhot, China
- *Correspondence: Ji-Quan Sun,
| |
Collapse
|
10
|
Husna, Hussain A, Shah M, Hamayun M, Iqbal A, Qadir M, Alataway A, Dewidar AZ, Elansary HO, Lee IJ. Phytohormones producing rhizobacteria alleviate heavy metals stress in soybean through multilayered response. Microbiol Res 2023; 266:127237. [DOI: 10.1016/j.micres.2022.127237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 09/26/2022] [Accepted: 10/12/2022] [Indexed: 11/06/2022]
|
11
|
Khan A, Ali S, Khan M, Hamayun M, Moon YS. Parthenium hysterophorus's Endophytes: The Second Layer of Defense against Biotic and Abiotic Stresses. Microorganisms 2022; 10:2217. [PMID: 36363809 PMCID: PMC9696505 DOI: 10.3390/microorganisms10112217] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 11/07/2022] [Accepted: 11/08/2022] [Indexed: 09/10/2023] Open
Abstract
Parthenium hysterophorus L. is considered an obnoxious weed due to its rapid dispersal, fast multiplications, and agricultural and health hazards. In addition to its physio-molecular and phytotoxic allelochemical usage, this weed most probably uses endophytic flora as an additional line of defense to deal with stressful conditions and tolerate both biotic and abiotic stresses. The aim of this article is to report the diversity of endophytic flora (fungi and bacteria) in P. hysterophorus and their role in the stress mitigation (biotic and abiotic) of other important crops. Various endophytes were reported from P. hysterophorus and their roles in crops evaluated under biotic and abiotic stressed conditions. These endophytes have the potential to alleviate different stresses by improving crops/plants growth, development, biomass, and photosynthetic and other physiological traits. The beneficial role of the endophytes may be attributed to stress-modulating enzymes such as the antioxidants SOD, POD and APX and ACC deaminases. Additionally, the higher production of different classes of bioactive secondary metabolites, i.e., flavonoids, proline, and glutathione may also overcome tissue damage to plants under stressed conditions. Interestingly, a number of medicinally important phytochemicals such as anhydropseudo-phlegmcin-9, 10-quinone-3-amino-8-O methyl ether 'anhydropseudophlegmacin-9, 10-quinone-3-amino-8-Omethyl ether were reported from the endophytic flora of P. hysterophorus. Moreover, various reports revealed that fungal and bacterial endophytes of P. hysterophorus enhance plant growth-promoting attributes and could be added to the consortium of biofertilizers.
Collapse
Affiliation(s)
- Asif Khan
- Laboratory of Phytochemistry, Department of Botany, University of São Paulo, São Paulo 05508-090, Brazil
| | - Sajid Ali
- Department of Horticulture and Life Science, Yeungnam University, Gyeongsan 712-749, Korea
| | - Murtaza Khan
- Department of Horticulture and Life Science, Yeungnam University, Gyeongsan 712-749, Korea
| | - Muhammad Hamayun
- Department of Botany, Garden Campus, Abdul Wali Khan University Mardan, Mardan 23200, Pakistan
| | - Yong-Sun Moon
- Department of Horticulture and Life Science, Yeungnam University, Gyeongsan 712-749, Korea
| |
Collapse
|
12
|
Husna H, Hussain A, Shah M, Hamayun M, Iqbal A, Qadir M, Asim S, Lee IJ. Stemphylium lycopersici and Stemphylium solani improved antioxidant system of soybean under chromate stress. Front Microbiol 2022; 13:1001847. [PMID: 36406387 PMCID: PMC9668875 DOI: 10.3389/fmicb.2022.1001847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Accepted: 10/11/2022] [Indexed: 11/06/2022] Open
Abstract
Ecologists around the world are giving great attention to the metal pollution of agronomic soil. Recently, several techniques have been employed to remediate heavy metals, but the use of microorganisms is cheap, less time-consuming, and easily available. In the current study, the endophytic strains, Cp1 and Cp2 were isolated from sterilized 1–5 cm long root and leaf segments of Chlorophytum comosum using Hagem media. To get pure colonies, the strains were repeatedly cultured on potato dextrose agar (PDA) media. The strains Cp1 and CP2 were identified as Stemphylium lycopersici and Stemphylium solani based on ITS sequencing and neighbor joining (NJ) method. Both strains showed a growth-promoting potential in soybean seedlings exposed to chromate (Cr) stress. Moreover, S. lycopersici and S. solani improved the Indole-3-acetic acid (IAA), flavonoids, phenolics, protein, and proline contents, whereas, lowered Salicylic acid (SA) production in the seedlings. The selected endophytic fungal strains also promoted the antioxidant system of soybean seedlings through enhanced production of ascorbic acid oxidase (AAO), catalases (CAT), peroxidase, and free radical scavenging enzymes. Both strains bio-transformed the toxic Cr-VI to less toxic Cr-III in the cultural filtrate as well as host plants. In fact, efficient uptake of Cr and its conversion by the isolated endophytic fungal strains could be used as a viable tool to remediate Cr contamination in agricultural soils.
Collapse
Affiliation(s)
- Husna Husna
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Khyber Pakhtunkhwa, Pakistan
- Microbial Safety Division, Agro-Food Safety and Crop Protection Department, National Institute of Agricultural Science, Rural Development Administration, Wanju, South Korea
| | - Anwar Hussain
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Khyber Pakhtunkhwa, Pakistan
- *Correspondence: Anwar Hussain,
| | - Mohib Shah
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Muhammad Hamayun
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Amjad Iqbal
- Department of Food Science and Technology, Abdul Wali Khan University Mardan, Mardan, Khyber Pakhtunkhwa, Pakistan
- Amjad Iqbal,
| | - Muhammad Qadir
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Syed Asim
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - In-Jung Lee
- Department of Applied Biosciences, Kyungpook National University, Daegu, South Korea
- In-Jung Lee,
| |
Collapse
|
13
|
Aziz L, Hamayun M, Rauf M, Iqbal A, Husssin A, Khan SA, Shafique M, Arif M, Ahmad A, Rehman G, Ali S, Kang SM, Lee IJ. Aspergillus violaceofuscus alleviates cadmium and chromium stress in Okra through biochemical modulation. PLoS One 2022; 17:e0273908. [PMID: 36240136 PMCID: PMC9565449 DOI: 10.1371/journal.pone.0273908] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Accepted: 08/17/2022] [Indexed: 11/05/2022] Open
Abstract
Endophytic fungi from the Chilli were used to help okra plants exposed to cadmium (Cd) or chromium (Cr) stress. Initially, the strain Ch06 produced higher amounts of indole acetic acid (IAA) (230.5 μg/mL), sugar (130.7 μg/mL), proteins (128.2 μg/mL), phenolics (525.6 μg/mL) and flavonoids (98.4 μg/mL) in Czapek broth supplemented with Cd or Cr. The production of IAA and other metabolites in such a higher concentration suggested that Ch06 might improve plant growth under heavy metal stress. For this reason, an experiment was designed, in which biomass of Ch06 (at 2g/100g of sand) were applied to the okra plants exposed to Cd or Cr stress (at 100 or 500 μg/g). The results exhibited that Ch06 improved the total chlorophyll (36.4±0.2 SPAD), shoot length (22.6±0.2 cm), root length (9.1±0.6 cm), fresh weight (5±0.6 g), dry weight (1.25±0.01 g), sugars (151.6 μg/g), proteins (114.8 μg/g), proline (6.7 μg/g), flavonoids (37.9 μg/g), phenolics (70.7 μg/g), IAA (106.7 μg/g), catalase (0.75 enzyme units/g tissue) and ascorbic acid oxidaze (2.2 enzyme units/g tissue) of the associated okra plants. Similar observations have been recorded in Ch06 associated okra plants under Cd and Cr stress. Also, Ch06 association reduced translocation of Cd (35% and 45%) and Cr (47% and 53%) to the upper parts of the okra plants and thus reduced their toxicity. The internal transcribed spacer (ITS) region amplification of 18S rDNA (ribosomal deoxyribo nucleic acid) exhibited that the potent strain Ch06 was Aspergillus violaceofuscus. The results implied that A. violaceofuscus has the ability to promote host species growth exposed to Cd and Cr. Moreover, it helped the host plants to recover in Cd and Cr polluted soils, hence can be used as biofertilizer.
Collapse
Affiliation(s)
- Laila Aziz
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Muhammad Hamayun
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Pakistan
- * E-mail: (IL); (MH)
| | - Mamoona Rauf
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Amjad Iqbal
- Department of Food Science & Technology, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Anwar Husssin
- Department of Botany, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Sumera Afzal Khan
- Centre of Biotechnology and Microbiology, University of Peshawar, Peshawar, Pakistan
| | - Maryam Shafique
- Department of Microbiology, Federal Urdu University of Art, Science & Technology, Karachi, Pakistan
| | - Muhammad Arif
- Department of Biotechnology, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Ayaz Ahmad
- Department of Biotechnology, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Gauhar Rehman
- Department of Zoology, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Sajid Ali
- Department of Horticulture and Life Science, Yeumgnam University, Gyeongsan, Republic of Korea
| | - Sang Mo Kang
- Department of Applied Bioscience, College of Agriculture and Life Science, Kyungpook National University, Daegu, Republic of Korea
| | - In-Jung Lee
- Department of Applied Bioscience, College of Agriculture and Life Science, Kyungpook National University, Daegu, Republic of Korea
- * E-mail: (IL); (MH)
| |
Collapse
|
14
|
Fujita M, Hasanuzzaman M. Approaches to Enhancing Antioxidant Defense in Plants. Antioxidants (Basel) 2022; 11:antiox11050925. [PMID: 35624789 PMCID: PMC9137904 DOI: 10.3390/antiox11050925] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 05/05/2022] [Indexed: 12/17/2022] Open
Affiliation(s)
- Masayuki Fujita
- Laboratory of Plant Stress Responses, Faculty of Agriculture, Kagawa University, Miki-cho, Kita-gun, Takamatsu 761-0795, Japan;
| | - Mirza Hasanuzzaman
- Department of Agronomy, Faculty of Agriculture, Sher-e-Bangla Agricultural University, Dhaka 1207, Bangladesh
- Correspondence: ; Tel.: +880-17165-87711
| |
Collapse
|
15
|
Parada R, Mendoza L, Cotoras M, Ortiz C. Endophytic fungi isolated from plants present on a mine tailing facility show a differential growth response to lead. Lett Appl Microbiol 2022; 75:345-354. [PMID: 35486037 DOI: 10.1111/lam.13730] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2021] [Revised: 04/08/2022] [Accepted: 04/25/2022] [Indexed: 11/27/2022]
Abstract
Plants growing in metal polluted sites can be a source of microorganisms suitable for bio-assisted phytoremediation strategies. In this work, three endophytic fungi from the roots of Poa stuckertii and Poa pratensis, two grasses that naturally colonize a Lead-Zinc tailing storage facility in Southern Chile, were isolated and identified. The leachate of the tailing sands showed a Pb content of 1.36 ± 0.71 ppm, and a pH of 7.3. By amplifying the ITS1/ITS4 region of fungal ribosomal DNA, the isolates were identified as Bjerkandera sp., Microdochium sp. and Sarocladium sp. When the growth media was supplemented with 50 ppm of Pb at pH 4.5, Microdochium sp. showed an 80% decrease in the biomass, but the biomass production of Bjerkandera sp. and Sarocladium sp. was not affected by the same treatment. The accumulation of Pb in Microdochium sp. increased as a function of the concentration of the metal in the growth media, between 48.3 μM and 241.3 μM. We showed that two Poaceae plants growing on a Lead-Zinc tailing storage facility are a source of endophyte fungi, and that Pb had a differential effect on the growth of the isolated fungi independent of the plant of origin.
Collapse
Affiliation(s)
- Rodolfo Parada
- Facultad de Química y Biología Universidad de Santiago de Chile, Santiago, Chile Av. Bernardo O´Higgins 3363, Post-code 9170022, Estación Central, Chile
| | - Leonora Mendoza
- Facultad de Química y Biología Universidad de Santiago de Chile, Santiago, Chile Av. Bernardo O´Higgins 3363, Post-code 9170022, Estación Central, Chile
| | - Milena Cotoras
- Facultad de Química y Biología Universidad de Santiago de Chile, Santiago, Chile Av. Bernardo O´Higgins 3363, Post-code 9170022, Estación Central, Chile
| | - Claudia Ortiz
- Facultad de Química y Biología Universidad de Santiago de Chile, Santiago, Chile Av. Bernardo O´Higgins 3363, Post-code 9170022, Estación Central, Chile
| |
Collapse
|