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Arbabi F, Shapoury R, Haghi F, Zeighami H, Pirzeh R. Investigating the bacterial profiles of Lactobacillus, Bifidobacterium, Actinobacteria, Fusobacterium, Firmicutes, and Bacteroides in stool samples from patients with severe depression and healthy individuals. Psychoneuroendocrinology 2024; 170:107090. [PMID: 39217732 DOI: 10.1016/j.psyneuen.2024.107090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 05/17/2024] [Accepted: 05/30/2024] [Indexed: 09/04/2024]
Abstract
Depression is a multifaceted mental health disorder with complex etiology and significant global burden. Recent research indicates that the gut microbiota plays a role in the pathophysiology of depression, highlighting the potential role of specific bacterial species in influencing mood and cognitive function. In this study, we aimed to investigate the presence, copy numbers, and Ct values of selected bacterial species in stool samples from depressed patients (n=50) compared to control subjects (n=50). Our findings revealed significant differences in the abundance of Fusobacterium spp., Bifidobacterium spp., Lactobacillus spp., Bacteroidetes phylum, Firmicutes phylum, and Actinobacteria spp. between the two groups. Dysregulation of the gut microbiota, characterized by decreased presence of beneficial bacteria (e.g., Bifidobacterium spp., Lactobacillus spp.) and altered abundance of potentially pathogenic bacteria (e.g., Fusobacterium spp.), may contribute to the development or exacerbation of depression. These findings support the emerging concept of the gut-brain axis and its role in mental health. However, further research is needed to better understand the underlying mechanisms and explore the therapeutic potential of microbiota-targeted interventions for depression. Understanding the intricate interplay between the gut microbiota and depression could pave the way for novel treatment strategies and personalized approaches in mental health care.
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Affiliation(s)
- Fatemeh Arbabi
- Department of Microbiology, Zanjan Branch, Islamic Azad University, Zanjan, Iran
| | - Reza Shapoury
- Department of Microbiology, Zanjan Branch, Islamic Azad University, Zanjan, Iran.
| | - Fakhri Haghi
- Department of Microbiology and Virology, School of Medicine, Zanjan University of Medical Science, Zanjan, Iran
| | - Habib Zeighami
- Department of Microbiology and Virology, School of Medicine, Zanjan University of Medical Science, Zanjan, Iran
| | - Reza Pirzeh
- Shahid Beheshti Hospital, Zanjan University of Medical Science, Zanjan, Iran
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2
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Rabelo JDS, Carvalho FCTD, Rebouças RH, Sousa OVD. Microbial ocean-atmosphere transfer: The influence of sewage discharge into coastal waters on bioaerosols from an urban beach in the subtropical Atlantic. MARINE ENVIRONMENTAL RESEARCH 2024; 202:106765. [PMID: 39357203 DOI: 10.1016/j.marenvres.2024.106765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 09/21/2024] [Accepted: 09/22/2024] [Indexed: 10/04/2024]
Abstract
All over the world, the oceans are the final destination of sewage transported by river estuaries, rainwater and other coastal discharges. The risks to human health related to direct contact with water and consumption of contaminated fish are well known, but little is known about the potential for atmospheric exposure to pollutants and pathogens from contaminated seawater. The release of microbial particles from the sea into the atmosphere occurs mainly by the eruption of rising bubbles through the sea surface microlayer (SML) or by sea spray. We investigated the heterotrophic bacteria density and relative abundance in SML and bioaerosols originated on the seafront of Fortaleza (Atlantic coastal zone, northeastern Brazil) influenced by wastewater disposal. There was a difference in the density of total heterotrophic bacteria (THB) according to the matrix analyzed during two seasons: the bacterial count was highest in the SML during the rainy season while the highest number of bacteria in bioaerosols samples was recorded during the dry season. Twenty-nine bacterial taxonomic groups were identified with variable abundance for both environments. These were the same in both matrices, with environmental variables influencing their abundance and composition. The contribution of the marine and continental environments in shaping the microbiota of the SML and coastal bioaerosols was clear, with the constant and representative presence of Enterobacteria standing out. The aerosolization of bacteria resulting from the discharge of untreated sewage is an important issue related to coastal environmental health and ecological safety.
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Affiliation(s)
| | | | - Rosa Helena Rebouças
- Department of Fisheries Engineering, University of Delta do Parnaíba (UFDPar), Piauí, Brazil
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3
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Brame JE, Liddicoat C, Abbott CA, Edwards RA, Robinson JM, Gauthier NE, Breed MF. The macroecology of butyrate-producing bacteria via metagenomic assessment of butyrate production capacity. Ecol Evol 2024; 14:e11239. [PMID: 38694752 PMCID: PMC11057059 DOI: 10.1002/ece3.11239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 03/15/2024] [Accepted: 03/22/2024] [Indexed: 05/04/2024] Open
Abstract
Butyrate-producing bacteria are found in many outdoor ecosystems and host organisms, including humans, and are vital to ecosystem functionality and human health. These bacteria ferment organic matter, producing the short-chain fatty acid butyrate. However, the macroecological influences on their biogeographical distribution remain poorly resolved. Here we aimed to characterise their global distribution together with key explanatory climatic, geographical and physicochemical variables. We developed new normalised butyrate production capacity (BPC) indices derived from global metagenomic (n = 13,078) and Australia-wide soil 16S rRNA (n = 1331) data, using Geographic Information System (GIS) and modelling techniques to detail their ecological and biogeographical associations. The highest median BPC scores were found in anoxic and fermentative environments, including the human (BPC = 2.99) and non-human animal gut (BPC = 2.91), and in some plant-soil systems (BPC = 2.33). Within plant-soil systems, roots (BPC = 2.50) and rhizospheres (BPC = 2.34) had the highest median BPC scores. Among soil samples, geographical and climatic variables had the strongest overall effects on BPC scores (variable importance score range = 0.30-0.03), with human population density also making a notable contribution (variable importance score = 0.20). Higher BPC scores were in soils from seasonally productive sandy rangelands, temperate rural residential areas and sites with moderate-to-high soil iron concentrations. Abundances of butyrate-producing bacteria in outdoor soils followed complex ecological patterns influenced by geography, climate, soil chemistry and hydrological fluctuations. These new macroecological insights further our understanding of the ecological patterns of outdoor butyrate-producing bacteria, with implications for emerging microbially focused ecological and human health policies.
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Affiliation(s)
- Joel E. Brame
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
| | - Craig Liddicoat
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
- School of Public HealthThe University of AdelaideAdelaideSouth AustraliaAustralia
| | - Catherine A. Abbott
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
| | - Robert A. Edwards
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
| | - Jake M. Robinson
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
| | | | - Martin F. Breed
- College of Science and EngineeringFlinders UniversityBedford ParkSouth AustraliaAustralia
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4
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Nga DDY, Nhung VH, Nhan NT, Hien TT. Study on the concentration, composition, and recovery rate of bacterial bioaerosols after rainfall in Ho Chi Minh City. ENVIRONMENTAL MONITORING AND ASSESSMENT 2024; 196:295. [PMID: 38383896 DOI: 10.1007/s10661-024-12442-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2023] [Accepted: 02/12/2024] [Indexed: 02/23/2024]
Abstract
Aerosolized microorganisms have become an important factor in assessing air quality. To determine the characteristics of bacterial bioaerosols in air and rainwater, as well as calculate the recovery rate of bacteria after rains in Ho Chi Minh City, our study was performed using the SKC Biostage sampler for airborne bacteria and Plate Count Agar (PCA) medium for bacterial concentration. Subsequently, the study determined the bacterial community composition at the phylum and order levels using the 16S rRNA (16S metabarcoding) method. Before the rain, bacterial concentrations in the air ranged from 263.39 ± 21.00 to 277.39 ± 78.99 CFU/m3, and in rainwater 264.89 ± 51.17 to 285.72 ± 28.00 CFU/m3. Following rains, the bacterial concentrations decreased to their lowest levels within the first 1-2 h and gradually increased thereafter, reaching their peak after 9 h for heavy rain and after 12 h for light and moderate rains. The bacterial bioaerosols recovery rate was determined to be 100% for light and moderate rains and 94.6% for heavy rain. The change in bacterial concentration after rainfall showed a positive correlation with temperature (r = 0.85) and CO2 concentration (r = 0.70) and a negative correlation with relative humidity (r = - 0.79). Bacterial composition analysis revealed that the Actinobacteria, Firmicutes, and Proteobacteria phyla were dominant and characteristic of the humid tropical climate in Vietnam. Notably, Firmicutes were the most prevalent phylum both before and after rains. The increased prevalence of certain bacterial orders, particularly Staphylococcus, could contribute to the spread of pathogens, particularly foodborne pathogens. In addition to rain, relative humidity contributed to reducing bacterial bioaerosols concentration and their recovery rate after the rain.
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Affiliation(s)
- Dang Diep Yen Nga
- Department of Environmental Engineering, Faculty of Environment, University of Science, VNUHCM, Ho Chi Minh City, Vietnam.
- Viet Nam National University, Ho Chi Minh City, Vietnam.
| | - Vuong Hong Nhung
- Department of Environmental Engineering, Faculty of Environment, University of Science, VNUHCM, Ho Chi Minh City, Vietnam
- Viet Nam National University, Ho Chi Minh City, Vietnam
| | - Nguyen Tri Nhan
- Viet Nam National University, Ho Chi Minh City, Vietnam
- Faculty of Biology and Biotechnology, University of Science, VNUHCM, Ho Chi Minh City, Vietnam
| | - To Thi Hien
- Department of Environmental Engineering, Faculty of Environment, University of Science, VNUHCM, Ho Chi Minh City, Vietnam
- Viet Nam National University, Ho Chi Minh City, Vietnam
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5
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Li X, Zhu L, Zhang SY, Li J, Lin D, Wang M. Characterization of microbial contamination in agricultural soil: A public health perspective. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:169139. [PMID: 38070547 DOI: 10.1016/j.scitotenv.2023.169139] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 12/03/2023] [Accepted: 12/04/2023] [Indexed: 01/18/2024]
Abstract
Soil is widely recognized as a reservoir of microbial contaminants including antibiotic resistance genes (ARGs) and human bacterial pathogens (HBPs), which are major public health concerns. Although the risks associated with soil safety in different soil habitats have been studied, the results are not comprehensive. In this study, dryland soils used for vegetable, corn, and soybean planting, and submerged soils used for rice planting and crab farming were collected and subjected to metagenomic sequencing to characterize HBPs, ARGs, and virulence factor genes (VFGs). The results showed that submerged soils had a higher abundance of HBP than dryland soils. In addition, the submerged soil microbiome acquired significantly higher levels of high-risk ARGs than the dryland soil microbiome and these ARGs were mainly assigned to bacA, sul1, and aadA genes submerged. Network analysis revealed that 11 HBPs, including Yersinia enterocolitica, Vibrio cholerae, Escherichia coli, and Leptospira interrogans, were high-risk because of their close association with ARGs, VFGs, and mobile genetic elements (MGEs). Procrustes and network analyses showed that HBPs and ARGs were more closely linked in submerged soil. This study confirms that submerged field has higher ecological environment risk and human health risk than dryland soil.
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Affiliation(s)
- Xiaodi Li
- International Science and Technology Cooperation Platform for Low-Carbon Recycling of Waste and Green Development & Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Lin Zhu
- International Science and Technology Cooperation Platform for Low-Carbon Recycling of Waste and Green Development & Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Si-Yu Zhang
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Jingpeng Li
- International Science and Technology Cooperation Platform for Low-Carbon Recycling of Waste and Green Development & Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Da Lin
- International Science and Technology Cooperation Platform for Low-Carbon Recycling of Waste and Green Development & Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Meizhen Wang
- International Science and Technology Cooperation Platform for Low-Carbon Recycling of Waste and Green Development & Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China.
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6
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Chen Y, Lei X, Jiang J, Qin Y, Jiang L, Liu YL. Microbial diversity on grape epidermis and wine volatile aroma in spontaneous fermentation comprehensively driven by geography, subregion, and variety. Int J Food Microbiol 2023; 404:110315. [PMID: 37467530 DOI: 10.1016/j.ijfoodmicro.2023.110315] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 06/15/2023] [Accepted: 07/05/2023] [Indexed: 07/21/2023]
Abstract
On their journey from the wine grape to the resulting wine, microbiota from grape surfaces controlled by multiple factors is transferred to wine spontaneous fermentation process with indisputable consequences for wine quality parameters. The associated microbiota was regionally distinct (defined to microbial terroir) but how these microbial patterns with significantly regional distinctiveness quantitatively drive the wine regional characteristics are not definite within a complete grape ecosystem at different geographical (> 300 km), subregional (< 10 km), and varietal scales. Here, we collected 24 samples (containing two grape varieties) from four subregions of two regions in Xinjiang wine production area to investigate fungal distribution patterns and the association with wine chemical composition at different evaluation scales. Meanwhile, the relationships were established between geographical, subregional, varietal community of fungi, and wine volatile aroma using partial least squares regression (PLSR) and structural equation modeling (SEM). Results show that microbial and volatile samples present the significantly regional difference inside the complete ecosystem. Microbiota showed a stronger heterogeneity at geography scales, which drove the distributions of subregional and varietal microbiota thereby influencing the volatile composition of finished wines. Moreover, geographical microbiota seems to weaken the effects of varietal community on wine aroma compounds. Microbial communities respond to environmental changes within a completely set grape-related ecosystem at different scales, and these responses resulted in the wine regional distinctiveness based on the volatile profiles. Our findings further confirmed the important role of microbial terroir in shaping wine styles and provided the new cerebration for the terroir drivers of microbiota.
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Affiliation(s)
- Yu Chen
- College of Enology, Northwest A & F University, Yangling, China
| | - Xingmeng Lei
- College of Enology, Northwest A & F University, Yangling, China
| | - Jiao Jiang
- College of Enology, Northwest A & F University, Yangling, China
| | - Yi Qin
- College of Enology, Northwest A & F University, Yangling, China
| | - Lei Jiang
- College of Life and Geographical Sciences, Kashi University, Kashi, China.
| | - Yan-Lin Liu
- College of Enology, Northwest A & F University, Yangling, China.
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7
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Guillemette R, Harwell MC, Brown CA. Metabolically active bacteria detected with click chemistry in low organic matter rainwater. PLoS One 2023; 18:e0285816. [PMID: 37200308 DOI: 10.1371/journal.pone.0285816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Accepted: 05/01/2023] [Indexed: 05/20/2023] Open
Abstract
Rain contains encapsulated bacteria that can be transported over vast distances during relatively short periods of time. However, the ecological significance of bacteria in "precontact" rainwater-rainwater prior to contact with non-atmospheric surfaces-remains relatively undefined given the methodological challenges of studying low-abundance microbes in a natural assemblage. Here, we implement single-cell "click" chemistry in a novel application to detect the protein synthesis of bacteria in precontact rainwater samples as a measure of metabolic activity. Using epifluorescence microscopy, we find approximately 103-104 bacteria cells mL-1 with up to 7.2% of the observed cells actively synthesizing protein. Additionally, our measurement of less than 30 μM total organic carbon in the samples show that some rainwater bacteria can metabolize substrates in very low organic matter conditions, comparable to extremophiles in the deep ocean. Overall, our results raise new questions for the field of rainwater microbiology and may help inform efforts to develop quantitative microbial risk assessments for the appropriate use of harvested rainwater.
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Affiliation(s)
- Ryan Guillemette
- Pacific Coastal Ecology Branch, United States Environmental Protection Agency, Newport, Oregon, United States of America
| | - Matthew C Harwell
- Pacific Coastal Ecology Branch, United States Environmental Protection Agency, Newport, Oregon, United States of America
| | - Cheryl A Brown
- Pacific Coastal Ecology Branch, United States Environmental Protection Agency, Newport, Oregon, United States of America
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8
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Neira M, Erguler K, Ahmady-Birgani H, Al-Hmoud ND, Fears R, Gogos C, Hobbhahn N, Koliou M, Kostrikis LG, Lelieveld J, Majeed A, Paz S, Rudich Y, Saad-Hussein A, Shaheen M, Tobias A, Christophides G. Climate change and human health in the Eastern Mediterranean and Middle East: Literature review, research priorities and policy suggestions. ENVIRONMENTAL RESEARCH 2023; 216:114537. [PMID: 36273599 PMCID: PMC9729515 DOI: 10.1016/j.envres.2022.114537] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 09/29/2022] [Accepted: 10/06/2022] [Indexed: 05/17/2023]
Abstract
Human health is linked to climatic factors in complex ways, and climate change can have profound direct and indirect impacts on the health status of any given region. Susceptibility to climate change is modulated by biological, ecological and socio-political factors such as age, gender, geographic location, socio-economic status, occupation, health status and housing conditions, among other. In the Eastern Mediterranean and Middle East (EMME), climatic factors known to affect human health include extreme heat, water shortages and air pollution. Furthermore, the epidemiology of vector-borne diseases (VBDs) and the health consequences of population displacement are also influenced by climate change in this region. To inform future policies for adaptation and mitigation measures, and based on an extensive review of the available knowledge, we recommend several research priorities for the region. These include the generation of more empirical evidence on exposure-response functions involving climate change and specific health outcomes, the development of appropriate methodologies to evaluate the physical and psychological effects of climate change on vulnerable populations, determining how climate change alters the ecological determinants of human health, improving our understanding of the effects of long-term exposure to heat stress and air pollution, and evaluating the interactions between adaptation and mitigation strategies. Because national boundaries do not limit most climate-related factors expected to impact human health, we propose that adaptation/mitigation policies must have a regional scope, and therefore require collaborative efforts among EMME nations. Policy suggestions include a decisive region-wide decarbonisation, the integration of environmentally driven morbidity and mortality data throughout the region, advancing the development and widespread use of affordable technologies for the production and management of drinking water by non-traditional means, the development of comprehensive strategies to improve the health status of displaced populations, and fostering regional networks for monitoring and controlling the spread of infectious diseases and disease vectors.
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Affiliation(s)
- Marco Neira
- Climate and Atmosphere Research Center (CARE-C), The Cyprus Institute, Nicosia, Cyprus.
| | - Kamil Erguler
- Climate and Atmosphere Research Center (CARE-C), The Cyprus Institute, Nicosia, Cyprus
| | | | | | - Robin Fears
- European Academies Science Advisory Council (EASAC), Halle (Saale), Germany
| | | | - Nina Hobbhahn
- European Academies Science Advisory Council (EASAC), Halle (Saale), Germany
| | - Maria Koliou
- University of Cyprus Medical School, Nicosia, Cyprus
| | - Leondios G Kostrikis
- Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus; Cyprus Academy of Sciences, Letters, and Arts, Nicosia, Cyprus
| | - Jos Lelieveld
- Climate and Atmosphere Research Center (CARE-C), The Cyprus Institute, Nicosia, Cyprus; Max Planck Institute for Chemistry, Mainz, Germany
| | - Azeem Majeed
- Department of Primary Care & Public Health, Imperial College London, London, United Kingdom
| | - Shlomit Paz
- Department of Geography and Environmental Studies, University of Haifa, Haifa, Israel
| | - Yinon Rudich
- Department of Earth and Planetary Sciences, The Weismann Institute of Science, Rehovot, Israel
| | - Amal Saad-Hussein
- Environment and Climate Change Research Institute, National Research Centre, Cairo, Egypt
| | - Mohammed Shaheen
- Damour for Community Development - Research Department, Palestine
| | - Aurelio Tobias
- Institute of Environmental Assessment and Water Research (IDAEA), Spanish Council for Scientific Research (CSIC), Barcelona, Spain
| | - George Christophides
- Climate and Atmosphere Research Center (CARE-C), The Cyprus Institute, Nicosia, Cyprus; Department of Life Sciences, Imperial College London, London, United Kingdom.
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9
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Wang J, Huang JJ, Lynch I. Seasonal and short-term variations of bacteria and pathogenic bacteria on road deposited sediments. ENVIRONMENTAL RESEARCH 2022; 204:111903. [PMID: 34454932 DOI: 10.1016/j.envres.2021.111903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 08/13/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
The bacteria (including pathogenic bacteria) attached to road deposited sediments (RDS) may interrelate with the microbe in the atmosphere, soil and water through resuspension and wash-off, and is of great significance to human and ecological health. However, the characteristics of bacterial communities with different time scale on RDS were unknown to dates. Climate change prolonged the dry days between rain events in many areas, making the varied trend of bacterial communities might be more significant in short term. This study revealed the characteristics of bacterial communities on RDS in urban and suburban areas through seasonal and daily scale. The correlations between other factors (land use, particle size, and chemical components) and the bacterial communities were also analyzed. It was found that the season showed a higher association with the bacterial community diversity than land use and particle size in urban areas. The bacterial community diversity increased substantially throughout the short-term study period (41 days) and the variation of dominant bacteria could be fitted by quadratic function in suburbs. In addition, urbanization notably increased the bacterial community diversity, while the potential pathogenic bacteria were more abundant in the suburban areas, coarse RDS (>75 μm), and in spring. The chemical components on RDS showed special correlations with the relative abundance of dominant bacteria. The research findings would fill the knowledge gap on RDS bacterial communities and be helpful for the future research on the assembly process of bacterial communities.
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Affiliation(s)
- Jingshu Wang
- College of Environmental Science and Engineering/Sino-Canada Joint R&D Centre on Water and Environmental Safety, Nankai University, 300071, Tianjin, China
| | - Jinhui Jeanne Huang
- College of Environmental Science and Engineering/Sino-Canada Joint R&D Centre on Water and Environmental Safety, Nankai University, 300071, Tianjin, China.
| | - Iseult Lynch
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom
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Yan D, Zhang T, Bai JL, Su J, Zhao LL, Wang H, Fang XM, Zhang YQ, Liu HY, Yu LY. Isolation, Characterization, and Antimicrobial Activity of Bacterial and Fungal Representatives Associated With Particulate Matter During Haze and Non-haze Days. Front Microbiol 2022; 12:793037. [PMID: 35087495 PMCID: PMC8787346 DOI: 10.3389/fmicb.2021.793037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 12/07/2021] [Indexed: 12/07/2022] Open
Abstract
Particulate matter (PM) has been a threat to the environment and public health in the metropolises of developing industrial countries such as Beijing. The microorganisms associated with PM have an impact on human health if they are exposed to the respiratory tract persistently. There are few reports on the microbial resources collected from PM and their antimicrobial activities. In this study, we greatly expanded the diversity of available commensal organisms by collecting 1,258 bacterial and 456 fungal isolates from 63 PM samples. A total of 77 bacterial genera and 35 fungal genera were included in our pure cultures, with Bacillus as the most prevalent cultured bacterial genus, Aspergillus, and Penicillium as the most prevalent fungal ones. During heavy-haze days, the numbers of colony-forming units (CFUs) and isolates of bacteria and fungi were decreased. Bacillus, Paenibacillus, and Chaetomium were found to be enriched during haze days, while Kocuria, Microbacterium, and Penicillium were found to be enriched during non-haze days. Antimicrobial activity against common pathogens have been found in 40 bacterial representatives and 1 fungal representative. The collection of airborne strains will provide a basis to greatly increase our understanding of the relationship between bacteria and fungi associated with PM and human health.
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Affiliation(s)
- Dong Yan
- China Pharmaceutical Culture Collection, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
- Xinxiang Key Laboratory of Pathogenic Biology, Department of Pathogenic Biology, School of Basic Medical Sciences, Xinxiang Medical University, Xinxiang, China
| | - Tao Zhang
- China Pharmaceutical Culture Collection, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Jing-Lin Bai
- China Pharmaceutical Culture Collection, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Jing Su
- China Pharmaceutical Culture Collection, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Li-Li Zhao
- China Pharmaceutical Culture Collection, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Hao Wang
- China Pharmaceutical Culture Collection, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Xiao-Mei Fang
- China Pharmaceutical Culture Collection, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Yu-Qin Zhang
- China Pharmaceutical Culture Collection, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Hong-Yu Liu
- China Pharmaceutical Culture Collection, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Li-Yan Yu
- China Pharmaceutical Culture Collection, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
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11
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Triadó-Margarit X, Cáliz J, Casamayor EO. A long-term atmospheric baseline for intercontinental exchange of airborne pathogens. ENVIRONMENT INTERNATIONAL 2022; 158:106916. [PMID: 34627012 DOI: 10.1016/j.envint.2021.106916] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 09/30/2021] [Accepted: 10/01/2021] [Indexed: 06/13/2023]
Abstract
The atmosphere is a potential pathway for global-scale and long-range dispersal of viable microorganisms, promoting biological interconnections among the total environment. We aimed to provide relevant baseline information for long-range long-term intercontinental exchange of potentially infectious airborne microorganisms of major interest in environmental and health-related disciplines. We used an interannual survey (7-y) with wet depositions fortnightly collected above the boundary layer (free troposphere) at a remote high-elevation LTER (Long-Term-Ecological-Research) site, analyzed by 16S and 18S rRNA genes, and compared to a database of 475 well-known pathogens. We applied a conservative approach on close relatives of pathogenic species (>98% identity) standing their theoretical upper limit for atmospheric baseline relative abundances. We identified c. 2-3% of the total airborne microbiota as potential pathogens. Their most frequent environmental origins were soil, aquatic, and anthropogenic sources. Phytopathogens (mostly fungi) were the potential infectious agents most widely present. We uncovered consistent interannual dynamics with taxa foreseeable over time (i.e., predictable seasonal behavior) and under recurrent environmental scenarios (e.g., Saharan dust intrusions), respectively, being highly valuable microbial forensic environmental indicators. Up to 8 bacterial and 21 fungal genera consistently showed temporal abundances and recurrences unevenly distributed. Incidence of allergenic fungi was lower in summer, and significantly higher in spring. Close relatives to Coccidioides posadasii consistently showed higher signals (i.e., high specificity and high fidelity) in winter, whereas Cryptococcus neoformans had a significant signal in spring. Along Saharan dust intrusions, the bacterial phytopathogens Acidovorax avenae and Agrobacterium tumefaciens and the fungal phytopathogens Pseudozyma hubeiensis and Peniophora sp. consistently showed higher signals. Potential human pathogens showed low proportion, being mostly fungal allergens. Microorganisms related to obligated human, amphibian and fish pathogens were commonly found in winter. More studies in remote field sites above the boundary layer will unveil whether or not a similar trend is found globally.
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Affiliation(s)
- Xavier Triadó-Margarit
- Integrative Freshwater Ecology Group & LTER-AT Research Group, Centre of Advanced Studies of Blanes-Spanish Council for Research CEAB-CSIC, Blanes E-17300, Spain
| | - Joan Cáliz
- Integrative Freshwater Ecology Group & LTER-AT Research Group, Centre of Advanced Studies of Blanes-Spanish Council for Research CEAB-CSIC, Blanes E-17300, Spain
| | - Emilio O Casamayor
- Integrative Freshwater Ecology Group & LTER-AT Research Group, Centre of Advanced Studies of Blanes-Spanish Council for Research CEAB-CSIC, Blanes E-17300, Spain.
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12
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Alsante AN, Thornton DCO, Brooks SD. Ocean Aerobiology. Front Microbiol 2021; 12:764178. [PMID: 34777320 PMCID: PMC8586456 DOI: 10.3389/fmicb.2021.764178] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Accepted: 09/27/2021] [Indexed: 12/12/2022] Open
Abstract
Ocean aerobiology is defined here as the study of biological particles of marine origin, including living organisms, present in the atmosphere and their role in ecological, biogeochemical, and climate processes. Hundreds of trillions of microorganisms are exchanged between ocean and atmosphere daily. Within a few days, tropospheric transport potentially disperses microorganisms over continents and between oceans. There is a need to better identify and quantify marine aerobiota, characterize the time spans and distances of marine microorganisms’ atmospheric transport, and determine whether microorganisms acclimate to atmospheric conditions and remain viable, or even grow. Exploring the atmosphere as a microbial habitat is fundamental for understanding the consequences of dispersal and will expand our knowledge of biodiversity, biogeography, and ecosystem connectivity across different marine environments. Marine organic matter is chemically transformed in the atmosphere, including remineralization back to CO2. The magnitude of these transformations is insignificant in the context of the annual marine carbon cycle, but may be a significant sink for marine recalcitrant organic matter over long (∼104 years) timescales. In addition, organic matter in sea spray aerosol plays a significant role in the Earth’s radiative budget by scattering solar radiation, and indirectly by affecting cloud properties. Marine organic matter is generally a poor source of cloud condensation nuclei (CCN), but a significant source of ice nucleating particles (INPs), affecting the formation of mixed-phase and ice clouds. This review will show that marine biogenic aerosol plays an impactful, but poorly constrained, role in marine ecosystems, biogeochemical processes, and the Earth’s climate system. Further work is needed to characterize the connectivity and feedbacks between the atmosphere and ocean ecosystems in order to integrate this complexity into Earth System models, facilitating future climate and biogeochemical predictions.
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Affiliation(s)
- Alyssa N Alsante
- Department of Oceanography, Texas A&M University, College Station, TX, United States
| | - Daniel C O Thornton
- Department of Oceanography, Texas A&M University, College Station, TX, United States
| | - Sarah D Brooks
- Department of Atmospheric Sciences, Texas A&M University, College Station, TX, United States
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13
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Lambertucci SA, Speziale KL. Need for global conservation assessments and frameworks to include airspace habitat. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2021; 35:1341-1343. [PMID: 32975330 DOI: 10.1111/cobi.13641] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 09/12/2020] [Accepted: 09/20/2020] [Indexed: 06/11/2023]
Affiliation(s)
- Sergio A Lambertucci
- Grupo de Investigaciones en Biología de la Conservación, INIBIOMA, Universidad Nacional del Comahue - CONICET, Bariloche, 8400, Argentina
| | - Karina L Speziale
- Grupo de Investigaciones en Biología de la Conservación, INIBIOMA, Universidad Nacional del Comahue - CONICET, Bariloche, 8400, Argentina
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14
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Krupnik N, Asis DT, Belkin N, Rubin-Blum M, Israel Á, Paytan A, Meiri D, Herut B, Rahav E. Dust-borne microbes affect Ulva ohnoi's growth and physiological state. FEMS Microbiol Ecol 2021; 97:6129349. [PMID: 33544820 DOI: 10.1093/femsec/fiab020] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Accepted: 02/03/2021] [Indexed: 11/12/2022] Open
Abstract
The marine macroalgae Ulva sp. is considered an ecosystem engineer in rocky shores of temperate waters worldwide. Ulva sp. harbors a rich diversity of associated microbial epibionts, which are known to affect the algae's typical morphological development and 'health'. We examined the interaction between airborne microbes derived from atmospheric aerosols and Ulva ohnoi growth and physiological state. Specifically, we measured U. ohnoi growth rates and photosynthetic efficiency (Fv/Fm), alongside its microbial epibionts abundance, activity and diversity following dust (containing nutrients and airborne microorganisms) or UV-treated dust (only nutrients) amendments to filtered seawater. Parallel incubations with epibionts-free U. ohnoi (treated with antibiotics that removed the algae epibionts) were also tested to specifically examine if dust-borne microbes can replenish the epibiont community of U. ohnoi. We show that viable airborne microbes can restore U. ohnoi natural microbial epibionts communities, thereby keeping the seaweed alive and 'healthy'. These results suggest that microbes delivered through atmospheric aerosols can affect epiphyte biodiversity in marine flora, especially in areas subjected to high annual atmospheric dust deposition such as the Mediterranean Sea.
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Affiliation(s)
- Nimrod Krupnik
- Israel Oceanographic and Limnological Research, Tel-Shikmona 8030, Haifa, 310800, Israel.,Department of Biology, Technion-Israel Institute of Technology, Technion City, Haifa, 3200003, Israel
| | - Dorin Theodora Asis
- Department of Evolutionary and Human Biology, University of Haifa, Abba Khoushy Ave 199, Haifa, 3498838, Israel
| | - Natalia Belkin
- Israel Oceanographic and Limnological Research, Tel-Shikmona 8030, Haifa, 310800, Israel
| | - Maxim Rubin-Blum
- Israel Oceanographic and Limnological Research, Tel-Shikmona 8030, Haifa, 310800, Israel
| | - Álvaro Israel
- Israel Oceanographic and Limnological Research, Tel-Shikmona 8030, Haifa, 310800, Israel
| | - Adina Paytan
- Institute of Marine Science, University of California, 1156 High St, Santa Cruz, CA, 95064, USA
| | - David Meiri
- Department of Biology, Technion-Israel Institute of Technology, Technion City, Haifa, 3200003, Israel
| | - Barak Herut
- Israel Oceanographic and Limnological Research, Tel-Shikmona 8030, Haifa, 310800, Israel
| | - Eyal Rahav
- Israel Oceanographic and Limnological Research, Tel-Shikmona 8030, Haifa, 310800, Israel
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15
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Petroselli C, Montalbani E, La Porta G, Crocchianti S, Moroni B, Casagrande C, Ceci E, Selvaggi R, Sebastiani B, Gandolfi I, Franzetti A, Federici E, Cappelletti D. Characterization of long-range transported bioaerosols in the Central Mediterranean. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 763:143010. [PMID: 33131845 PMCID: PMC7571444 DOI: 10.1016/j.scitotenv.2020.143010] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 10/06/2020] [Accepted: 10/07/2020] [Indexed: 05/13/2023]
Abstract
Airborne bacteria were characterized over a 2-y period via high-throughput massive sequencing of 16S rRNA gene in aerosol samples collected at a background mountain European Monitoring and Evaluation Programme (EMEP) Network site (Monte Martano, Italy) located in the Central Mediterranean area. The air mass origin of nineteen samples was identified by air mass modelling and a detailed chemical analysis was performed. Four main origins (Saharan, North-western, North-eastern, and Regional) were identified, and distinct microbial communities were associated with these air masses. Samples featured a great bacterial diversity with Protobacteria being the most abundant phylum, and Sphingomonas followed by Acidovorax, Acinetobacter and Stenotrophomonas the most abundant genera of the dataset. Bacterial genera including potential human and animal pathogens were more abundant in European and in Regional samples compared to Saharan samples; this stressed the relevance of anthropic impact on bacterial populations transported by air masses that cross densely populated areas. The principal aerosol chemical characteristics and the airborne bacterial communities were correlated by cluster analysis, similarity tests and non-metric multidimensional scaling analysis, explaining most of the variability observed. However, the strong correlation between bacterial community structure and air mass origin hampered the possibility to disentangle the effects of variations in bacterial populations and in dust provenance on variations in chemical variables.
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Affiliation(s)
- Chiara Petroselli
- Faculty of Engineering and Physical Sciences, University of Southampton, University Road, SO17 1BJ Southampton, UK
| | - Elena Montalbani
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Gianandrea La Porta
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Stefano Crocchianti
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Beatrice Moroni
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Chiara Casagrande
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Elisa Ceci
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Roberta Selvaggi
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Bartolomeo Sebastiani
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - Isabella Gandolfi
- Department of Earth and Environmental Sciences, University of Milano-Bicocca, Milano, Italy
| | - Andrea Franzetti
- Department of Earth and Environmental Sciences, University of Milano-Bicocca, Milano, Italy
| | - Ermanno Federici
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy
| | - David Cappelletti
- Department of Chemistry, Biology and Biotechnology, University of Perugia, Perugia, Italy; CNR-ISP, Institute of Polar Science, National Research Council, Via Gobetti 101, Bologna, Italy.
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16
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Dillon CF, Dillon MB. Multi-Scale Airborne Infectious Disease Transmission. Appl Environ Microbiol 2021; 87:AEM.02314-20. [PMID: 33277266 PMCID: PMC7851691 DOI: 10.1128/aem.02314-20] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
Airborne disease transmission is central to many scientific disciplines including agriculture, veterinary biosafety, medicine, and public health. Legal and regulatory standards are in place to prevent agricultural, nosocomial, and community airborne disease transmission. However, the overall importance of the airborne pathway is underappreciated, e.g.,, US National Library of Medicine's Medical Subjects Headings (MESH) thesaurus lacks an airborne disease transmission indexing term. This has practical consequences as airborne precautions to control epidemic disease spread may not be taken when airborne transmission is important, but unrecognized. Publishing clearer practical methodological guidelines for surveillance studies and disease outbreak evaluations could help address this situation.To inform future work, this paper highlights selected, well-established airborne transmission events - largely cases replicated in multiple, independently conducted scientific studies. Methodologies include field experiments, modeling, epidemiology studies, disease outbreak investigations and mitigation studies. Collectively, this literature demonstrates that airborne viruses, bacteria, and fungal pathogens have the capability to cause disease in plants, animals, and humans over multiple distances - from near range (< 5 m) to continental (> 500 km) in scale. The plausibility and implications of undetected airborne disease transmission are discussed, including the notable underreporting of disease burden for several airborne transmitted diseases.
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Affiliation(s)
| | - Michael B Dillon
- Atmospheric, Earth, and Energy Division, Lawrence Livermore National Laboratory Livermore, California, USA 94551
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17
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Ling Y, Li W, Tong T, Li Z, Li Q, Bai Z, Wang G, Chen J, Wang Y. Assessing the Microbial Communities in Four Different Daqus by Using PCR-DGGE, PLFA, and Biolog Analyses. Pol J Microbiol 2020; 69:1-11. [PMID: 32067441 PMCID: PMC7256838 DOI: 10.33073/pjm-2020-004] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2019] [Revised: 01/04/2020] [Accepted: 07/19/2020] [Indexed: 12/30/2022] Open
Abstract
Daqu made from raw wheat, barley or pea is used as an inoculum for the fermentation of Chinese Baijiu. In this study, the microbial communities of four different types of Daqus (sauce-flavor Wuling Daqu, sauce and strong-flavor Baisha Daqu, strong-flavor Deshan Daqu, and light-flavor Niulanshan Daqu) were analyzed by polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE), phospholipid fatty acid (PLFA) analysis, and Biolog EcoPlates analysis (Biolog). Clear differences were seen between the microbial communities of the four Daqus. PCR-DGGE showed differences in the number and brightness of bands between the Daqus, indicating the presence of unique bacterial species in Deshan Daqu, Wuling Daqu, and Niulanshan Daqu. Lactobacillus sanfranciscensis, Bacillus thermoamylovorans, and some unclassified bacteria were unique to Wuling Daqu, Deshan Daqu, and Niulanshan Daqu, respectively. Moreover, some bacterial species were observed in all four Daqus. A total of 26 PLFAs between C12 to C20 were detected from the four Daqus by PLFA analysis. Wuling Daqu had the highest total and fungal biomasses, Baisha Daqu had the highest bacterial biomass, and Niulanshan Daqu had the highest ratio of fungal biomass to bacterial biomass. The Biolog results indicated differences in the carbon source use and mode of the four Daqus, and also demonstrated that each Daqu had varying abilities to utilize different types of carbon sources. The cluster analysis of the three methods showed that the microbial communities of the four Daqus were different. This study also demonstrates the applicability of the three analytical methods in the evaluating of the microbial communities of Daqus.
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Affiliation(s)
- Yuxi Ling
- College of Biochemical Engineering , Beijing Union University , Beijing , China
| | - Wenying Li
- College of Liberal Arts and Sciences , National University of Defense Technology , Changsha , China
| | - Tong Tong
- College of Biochemical Engineering , Beijing Union University , Beijing , China
| | - Zuming Li
- College of Biochemical Engineering , Beijing Union University , Beijing , China
| | - Qian Li
- College of Biochemical Engineering , Beijing Union University , Beijing , China
| | - Zhihui Bai
- Research Center for Eco-Environmental Sciences , Chinese Academy of Sciences , Beijing , China
| | - Guijun Wang
- Hunan Wuling Spirits Co., Ltd. , Changde , China
| | - Jiahao Chen
- Hunan Wuling Spirits Co., Ltd. , Changde , China
| | - Yuguang Wang
- Hunan Wuling Spirits Co., Ltd. , Changde , China
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18
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Haas D, Kriso A, Fritz T, Galler H, Habib J, Ilieva M, Kropsch M, Ofner-Kopeinig P, Stonitsch M, Strasser A, Zentner E, Reinthaler FF. Background Concentrations of Cultivable, Mesophilic Bacteria and Dust Particles in the Air in Urban, Rural and Mountain Regions. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:ijerph17249572. [PMID: 33371355 PMCID: PMC7767401 DOI: 10.3390/ijerph17249572] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Revised: 12/08/2020] [Accepted: 12/15/2020] [Indexed: 11/16/2022]
Abstract
Particulate air components can be of anthropogenic or natural origin. It is assumed that in different geographical areas varying concentrations of mesophilic bacteria are present in the ambient air. The aim of this study was to determine the background concentrations of airborne culturable mesophilic bacteria and particulate matter in the ambient air. Furthermore, the association between their concentrations and some environmental factors was analysed. In the period from July to October 2019, concentrations of mesophilic bacteria and dust particles were measured in urban, rural and mountain areas using the single-stage air sampler and the particle counter. The concentrations of bacteria and dust particles in the air were counted as number of Colony Forming Units per cubic metre (CFU/m3) and particles per cubic metre (pa/m3). Staphylococcus sp. were identified. The median values of the cultivated mesophilic bacteria at 30 °C and 37 °C were 7.1 × 102 CFU/m3 and 2.3 × 101 CFU/m3 in mountain regions, 1.3 × 102 CFU/m3 and 6.9 × 101 CFU/m3 in rural regions and 2.1 × 102 CFU/m3 and 6.5 × 101 CFU/m3 in urban regions. The median of Staphylococcus sp. was 2.5 × 100 CFU/m3 in alpine areas and 7.5 × 100 CFU/m3 in urban and rural areas. Higher bacterial concentrations were measured in sunshine and in windy weather. A relationship was observed between the concentrations of airborne mesophilic bacteria and the coarse particles in all three areas. The present study determined values between 5.0 × 100 and 4.6 × 102 CFU/m3 as natural background concentrations of airborne mesophilic bacteria and 1.2 × 107 pa/m3 and 6.5 × 104 pa/m3 for fine and coarse particles, respectively. These results can be proposed as baseline for the assessment of the emission sources of mesophilic bacteria for summer and early autumn.
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Affiliation(s)
- Doris Haas
- D&R Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, 8010 Graz, Austria; (A.K.); (T.F.); (H.G.); (J.H.); (M.I.); (M.S.); (A.S.); (F.F.R.)
- Correspondence:
| | - Angela Kriso
- D&R Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, 8010 Graz, Austria; (A.K.); (T.F.); (H.G.); (J.H.); (M.I.); (M.S.); (A.S.); (F.F.R.)
| | - Theresa Fritz
- D&R Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, 8010 Graz, Austria; (A.K.); (T.F.); (H.G.); (J.H.); (M.I.); (M.S.); (A.S.); (F.F.R.)
| | - Herbert Galler
- D&R Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, 8010 Graz, Austria; (A.K.); (T.F.); (H.G.); (J.H.); (M.I.); (M.S.); (A.S.); (F.F.R.)
| | - Juliana Habib
- D&R Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, 8010 Graz, Austria; (A.K.); (T.F.); (H.G.); (J.H.); (M.I.); (M.S.); (A.S.); (F.F.R.)
| | - Mihaela Ilieva
- D&R Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, 8010 Graz, Austria; (A.K.); (T.F.); (H.G.); (J.H.); (M.I.); (M.S.); (A.S.); (F.F.R.)
| | - Michael Kropsch
- Agricultural Research and Education Center Raumberg Gumpenstein, 8952 Irdning, Austria; (M.K.); (E.Z.)
| | - Petra Ofner-Kopeinig
- Institute for Medical Informatics Statistics and Documentation, Medical University of Graz, 8036 Graz, Austria;
| | - Martin Stonitsch
- D&R Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, 8010 Graz, Austria; (A.K.); (T.F.); (H.G.); (J.H.); (M.I.); (M.S.); (A.S.); (F.F.R.)
| | - Andreas Strasser
- D&R Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, 8010 Graz, Austria; (A.K.); (T.F.); (H.G.); (J.H.); (M.I.); (M.S.); (A.S.); (F.F.R.)
| | - Eduard Zentner
- Agricultural Research and Education Center Raumberg Gumpenstein, 8952 Irdning, Austria; (M.K.); (E.Z.)
| | - Franz F. Reinthaler
- D&R Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, 8010 Graz, Austria; (A.K.); (T.F.); (H.G.); (J.H.); (M.I.); (M.S.); (A.S.); (F.F.R.)
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Chai A, Yuan L, Li L, Shi Y, Xie X, Wang Q, Li B. Aerosol transmission of Pseudomonas amygdali pv. lachrymans in greenhouses. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 748:141433. [PMID: 32818894 DOI: 10.1016/j.scitotenv.2020.141433] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Revised: 07/15/2020] [Accepted: 07/31/2020] [Indexed: 06/11/2023]
Abstract
Most previous studies on aerosols have focused on the role of aerosols in the transmission of human and animal pathogens; however, little is known about the role of aerosols in the transmission of plant bacterial disease. In this study, experimental evidence for the emission and transmission of Pseunomonas. amygdali pv. lachrymans (Pal) aerosol was provided, and the results supported that diseased cucumber plants served as the main source of Pal aerosol. Bacterial aerosols released by infected plants played a significant role in the epidemiology of cucumber angular leaf spot (ALS) disease. Aerosol chambers were constructed to study the characteristics of Pal aerosols released by artificially infested cucumber plants. The particle size of Pal aerosol was predominately distributed from 1.1 to 4.7 μm, accounting for 72.16% of the total amount of Pal aerosol. The infection threshold of aerosolized Pal to cause ALS disease was 84-179 CFU/m3. In addition, the transmission dynamics of Pal aerosols from donor cucumber plants to recipient cucumber plants were also confirmed in exposure chambers and greenhouses. The results from the present study verified the hypothesis that aerosol dissemination is a potential route for the epidemiology of plant bacterial disease, and these data will contribute to the development of new strategies for the effective alleviation and control of plant bacterial diseases.
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Affiliation(s)
- Ali Chai
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Lifang Yuan
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China; Department of Plant Pathology, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Lei Li
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Yanxia Shi
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Xuewen Xie
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Qi Wang
- Department of Plant Pathology, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Baoju Li
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
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20
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Ruiz-Gil T, Acuña JJ, Fujiyoshi S, Tanaka D, Noda J, Maruyama F, Jorquera MA. Airborne bacterial communities of outdoor environments and their associated influencing factors. ENVIRONMENT INTERNATIONAL 2020; 145:106156. [PMID: 33039877 DOI: 10.1016/j.envint.2020.106156] [Citation(s) in RCA: 80] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 09/20/2020] [Accepted: 09/21/2020] [Indexed: 05/16/2023]
Abstract
Microbial entities (such bacteria, fungi, archaea and viruses) within outdoor aerosols have been scarcely studied compared with indoor aerosols and nonbiological components, and only during the last few decades have their studies increased. Bacteria represent an important part of the microbial abundance and diversity in a wide variety of rural and urban outdoor bioaerosols. Currently, airborne bacterial communities are mainly sampled in two aerosol size fractions (2.5 and 10 µm) and characterized by culture-dependent (plate-counting) and culture-independent (DNA sequencing) approaches. Studies have revealed a large diversity of bacteria in bioaerosols, highlighting Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes as ubiquitous phyla. Seasonal variations in and dispersion of bacterial communities have also been observed between geographical locations as has their correlation with specific atmospheric factors. Several investigations have also suggested the relevance of airborne bacteria in the public health and agriculture sectors as well as remediation and atmospheric processes. However, although factors influencing airborne bacterial communities and standardized procedures for their assessment have recently been proposed, the use of bacterial taxa as microbial indicators of specific bioaerosol sources and seasonality have not been broadly explored. Thus, in this review, we summarize and discuss recent advances in the study of airborne bacterial communities in outdoor environments and the possible factors influencing their abundance, diversity, and seasonal variation. Furthermore, airborne bacterial activity and bioprospecting in different fields (e.g., the textile industry, the food industry, medicine, and bioremediation) are discussed. We expect that this review will reveal the relevance and influencing factors of airborne bacteria in outdoor environments as well as stimulate new investigations on the atmospheric microbiome, particularly in areas where air quality is a public concern.
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Affiliation(s)
- Tay Ruiz-Gil
- Doctorado en Ciencias de Recursos Naturales, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Temuco, Chile; Laboratorio de Ecología Microbiana Aplicada (EMALAB), Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile
| | - Jacquelinne J Acuña
- Laboratorio de Ecología Microbiana Aplicada (EMALAB), Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile; Network for Extreme Environment Research (NEXER), Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile; Center for Holobiome and Built Environment (CHOBE), Hiroshima University, Japan
| | - So Fujiyoshi
- Laboratorio de Ecología Microbiana Aplicada (EMALAB), Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile; Network for Extreme Environment Research (NEXER), Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile; Microbial Genomics and Ecology, Office of Industry-Academia-Government and Community Collaboration, Hiroshima University, Hiroshima, Japan; Center for Holobiome and Built Environment (CHOBE), Hiroshima University, Japan
| | - Daisuke Tanaka
- Graduate School of Science and Engineering, University of Toyama, Toyama, Japan
| | - Jun Noda
- Center for Holobiome and Built Environment (CHOBE), Hiroshima University, Japan; Graduate School of Veterinary Science, Rakuno Gakuen University, Hokkaido, Japan
| | - Fumito Maruyama
- Laboratorio de Ecología Microbiana Aplicada (EMALAB), Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile; Network for Extreme Environment Research (NEXER), Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile; Microbial Genomics and Ecology, Office of Industry-Academia-Government and Community Collaboration, Hiroshima University, Hiroshima, Japan; Center for Holobiome and Built Environment (CHOBE), Hiroshima University, Japan
| | - Milko A Jorquera
- Laboratorio de Ecología Microbiana Aplicada (EMALAB), Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile; Network for Extreme Environment Research (NEXER), Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile; Center for Holobiome and Built Environment (CHOBE), Hiroshima University, Japan.
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21
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Stange M, Barrett RDH, Hendry AP. The importance of genomic variation for biodiversity, ecosystems and people. Nat Rev Genet 2020; 22:89-105. [PMID: 33067582 DOI: 10.1038/s41576-020-00288-7] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/07/2020] [Indexed: 11/09/2022]
Abstract
The 2019 United Nations Global assessment report on biodiversity and ecosystem services estimated that approximately 1 million species are at risk of extinction. This primarily human-driven loss of biodiversity has unprecedented negative consequences for ecosystems and people. Classic and emerging approaches in genetics and genomics have the potential to dramatically improve these outcomes. In particular, the study of interactions among genetic loci within and between species will play a critical role in understanding the adaptive potential of species and communities, and hence their direct and indirect effects on biodiversity, ecosystems and people. We explore these population and community genomic contexts in the hope of finding solutions for maintaining and improving ecosystem services and nature's contributions to people.
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Affiliation(s)
- Madlen Stange
- Redpath Museum, McGill University, Montreal, QC, Canada
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22
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Bulski K. Bioaerosols at plants processing materials of plant origin-a review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:27507-27514. [PMID: 32415447 PMCID: PMC7334269 DOI: 10.1007/s11356-020-09121-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Accepted: 04/29/2020] [Indexed: 05/03/2023]
Abstract
Due to the dynamic development of industry, related to the processing of plant materials and a subsequent significant increase in the number of employees working in this kind of industry, the indoor air quality is of great importance for the human health. The premises of plants processing plant materials are a specific environment, related to exposure to biological agents. The major sources of microbial contamination of premises are employees' activities and the operation of devices used in the production process, quality of plant materials, technological processes, construction materials, ventilation (air-conditioning) systems, and outdoor air. Biological agents (primarily bacteria and fungi) transported in the air can cause numerous adverse health outcomes in exposed workers.
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Affiliation(s)
- Karol Bulski
- Department of Microbiology and Biomonitoring, University of Agriculture in Krakow, Krakow, Poland.
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23
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Garcia-Alcega S, Nasir ZA, Cipullo S, Ferguson R, Yan C, Whitby C, Dumbrell AJ, Drew G, Colbeck I, Tyrrel S, Coulon F. Fingerprinting ambient air to understand bioaerosol profiles in three different environments in the south east of England. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 719:137542. [PMID: 32120091 DOI: 10.1016/j.scitotenv.2020.137542] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Revised: 02/23/2020] [Accepted: 02/23/2020] [Indexed: 06/10/2023]
Abstract
Molecular and chemical fingerprints from 10 contrasting outdoor air environments, including three agricultural farms, three urban parks and four industrial sites were investigated to advance our understanding of bioaerosol distribution and emissions. Both phospholipid fatty acids (PLFA) and microbial volatile organic compounds (MVOC) profiles showed a different distribution in summer compared to winter. Further to this, a strong positive correlation was found between the total concentration of MVOCs and PLFAs (r = 0.670, p = 0.004 in winter and r = 0.767, p = 0.001 in summer) demonstrating that either chemical or molecular fingerprints of outdoor environments can provide good insights into the sources and distribution of bioaerosols. Environment specific variables and most representative MVOCs were identified and linked to microbial species emissions via a MVOC database and PLFAs taxonomical classification. While similar MVOCs and PLFAs were identified across all the environments suggesting common microbial communities, specific MVOCs were identified for each contrasting environment. Specifically, 3,4-dimethylpent-1-yn-3-ol, ethoxyethane and propanal were identified as key MVOCs for the industrial areas (and were correlated to fungi, Staphylococcus aureus (Gram positive bacteria) and Gram negative bacteria, R = 0.863, R = 0.618 and R = 0.676, respectively) while phthalic acid, propene and isobutane were key for urban environments (correlated to Gram negative bacteria, fungi and bacteria, R = 0.874, R = 0.962 and R = 0.969 respectively); and ethanol, 2-methyl-2-propanol, 2-methyl-1-pentene, butane, isoprene and methyl acetate were key for farms (correlated to fungi, Gram positive bacteria and bacteria, R = 0.690 and 0.783, R = 0.706 and R = 0.790, 0.761 and 0.768). The combination of MVOCs and PLFAs markers can assist in rapid microbial fingerprinting of distinct environmental influences on ambient air quality.
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Affiliation(s)
- Sonia Garcia-Alcega
- Cranfield University, School of Water, Energy and Environment, Cranfield MK43 0AL, UK
| | - Zaheer Ahmad Nasir
- Cranfield University, School of Water, Energy and Environment, Cranfield MK43 0AL, UK
| | - Sabrina Cipullo
- Cranfield University, School of Water, Energy and Environment, Cranfield MK43 0AL, UK
| | - Robert Ferguson
- University of Essex, School of Biological Sciences, Wivenhoe Park, Colchester CO4 3SQ, UK
| | - Cheng Yan
- Cranfield University, School of Water, Energy and Environment, Cranfield MK43 0AL, UK; China University of Geosciences, School of Environmental Studies, Wuhan 430074, PR China
| | - Corinne Whitby
- University of Essex, School of Biological Sciences, Wivenhoe Park, Colchester CO4 3SQ, UK
| | - Alex J Dumbrell
- University of Essex, School of Biological Sciences, Wivenhoe Park, Colchester CO4 3SQ, UK
| | - Gillian Drew
- Cranfield University, School of Water, Energy and Environment, Cranfield MK43 0AL, UK
| | - Ian Colbeck
- University of Essex, School of Biological Sciences, Wivenhoe Park, Colchester CO4 3SQ, UK
| | - Sean Tyrrel
- Cranfield University, School of Water, Energy and Environment, Cranfield MK43 0AL, UK
| | - Frederic Coulon
- Cranfield University, School of Water, Energy and Environment, Cranfield MK43 0AL, UK.
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24
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Els N, Greilinger M, Reisecker M, Tignat-Perrier R, Baumann-Stanzer K, Kasper-Giebl A, Sattler B, Larose C. Comparison of Bacterial and Fungal Composition and Their Chemical Interaction in Free Tropospheric Air and Snow Over an Entire Winter Season at Mount Sonnblick, Austria. Front Microbiol 2020; 11:980. [PMID: 32508790 PMCID: PMC7251065 DOI: 10.3389/fmicb.2020.00980] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2020] [Accepted: 04/23/2020] [Indexed: 11/24/2022] Open
Abstract
We investigated the interactions of air and snow over one entire winter accumulation period as well as the importance of chemical markers in a pristine free-tropospheric environment to explain variation in a microbiological dataset. To overcome the limitations of short term bioaerosol sampling, we sampled the atmosphere continuously onto quartzfiber air filters using a DIGITEL high volume PM10 sampler. The bacterial and fungal communities, sequenced using Illumina MiSeq, as well as the chemical components of the atmosphere were compared to those of a late season snow profile. Results reveal strong dynamics in the composition of bacterial and fungal communities in air and snow. In fall the two compartments were similar, suggesting a strong interaction between them. The overlap diminished as the season progressed due to an evolution within the snowpack throughout winter and spring. Certain bacterial and fungal genera were only detected in air samples, which implies that a distinct air microbiome might exist. These organisms are likely not incorporated in clouds and thus not precipitated or scavenged in snow. Although snow appears to be seeded by the atmosphere, both air and snow showed differing bacterial and fungal communities and chemical composition. Season and alpha diversity were major drivers for microbial variability in snow and air, and only a few chemical markers were identified as important in explaining microbial diversity. Air microbial community variation was more related to chemical markers than snow microbial composition. For air microbial communities Cl–, TC/OC, SO42–, Mg2+, and Fe/Al, all compounds related to dust or anthropogenic activities, were identified as related to bacterial variability while dust related Ca2+ was significant in snow. The only common driver for snow and air was SO42–, a tracer for anthropogenic sources. The occurrence of chemical compounds was coupled with boundary layer injections in the free troposphere (FT). Boundary layer injections also caused the observed variations in community composition and chemistry between the two compartments. Long-term monitoring is required for a more valid insight in post-depositional selection in snow.
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Affiliation(s)
- Nora Els
- Institute of Ecology, University of Innsbruck, Innsbruck, Austria
| | - Marion Greilinger
- Institute of Chemical Technologies and Analytics, Vienna University of Technology, Vienna, Austria.,Zentralanstalt für Meteorologie und Geodynamik (ZAMG), Vienna, Austria
| | - Michael Reisecker
- Avalanche Warning Service Tyrol, Department of Civil Protection, Federal State Government of Tyrol, Innsbruck, Austria
| | - Romie Tignat-Perrier
- Environmental Microbial Genomics Group, Laboratoire Ampère, École Centrale de Lyon, Écully, France
| | | | - Anne Kasper-Giebl
- Institute of Chemical Technologies and Analytics, Vienna University of Technology, Vienna, Austria
| | - Birgit Sattler
- Institute of Ecology, University of Innsbruck, Innsbruck, Austria
| | - Catherine Larose
- Environmental Microbial Genomics Group, Laboratoire Ampère, École Centrale de Lyon, Écully, France
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25
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Mechan Llontop ME, Hurley K, Tian L, Bernal Galeano VA, Wildschutte HK, Marine SC, Yoder KS, Vinatzer BA. Exploring Rain as Source of Biological Control Agents for Fire Blight on Apple. Front Microbiol 2020; 11:199. [PMID: 32117187 PMCID: PMC7033628 DOI: 10.3389/fmicb.2020.00199] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Accepted: 01/28/2020] [Indexed: 01/20/2023] Open
Abstract
Poor survival on plants can limit the efficacy of Biological Control Agents (BCAs) in the field. Yet bacteria survive in the atmosphere, despite their exposure to high solar radiation and extreme temperatures. If conditions in the atmosphere are similar to, or more extreme than, the environmental conditions on the plant surface, then precipitation may serve as a reservoir of robust BCAs. To test this hypothesis, two hundred and fifty-four rain-borne isolates were screened for in vitro inhibition of Erwinia amylovora, the causal agent of fire blight, as well as of other plant pathogenic bacteria, fungi and oomycetes. Two isolates showed strong activity against E. amylovora and other plant pathogenic bacteria, while other isolates showed activity against fungal and oomycete pathogens. Survival assays suggested that the two isolates that inhibited E. amylovora were able to survive on apple blossoms and branches similarly to E. amylovora. Pathogen population size and associated fire blight symptoms were significantly reduced when detached apple blossoms were treated with the two isolates before pathogen inoculation, however, disease reduction on attached blossoms within an orchard was inconsistent. Using whole genome sequencing, the isolates were identified as Pantoea agglomerans and P. ananatis, respectively. A UV-mutagenesis screen pointed to a phenazine antibiotic D-alanylgriseoluteic acid synthesis gene cluster as being at the base of the antimicrobial activity of the P. agglomerans isolate. Our work reveals the potential of precipitation as an under-explored source of BCAs, whole genome sequencing as an effective approach to precisely identify BCAs, and UV-mutagenesis as a technically simple screen to investigate the genetic basis of BCAs. More field trials are needed to determine the efficacy of the identified BCAs in fire blight control.
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Affiliation(s)
| | - Kelly Hurley
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| | - Long Tian
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
| | | | - Hans K. Wildschutte
- Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, United States
| | - Sasha C. Marine
- Department of Biochemistry, Virginia Tech, Blacksburg, VA, United States
| | - Keith S. Yoder
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
- Alson H. Smith Jr. Agricultural Research and Extension Center, Virginia Tech, Winchester, VA, United States
| | - Boris A. Vinatzer
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States
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26
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Zhao D, Liu G, Wang X, Daraz U, Sun Q. Abundance of human pathogen genes in the phyllosphere of four landscape plants. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2020; 255:109933. [PMID: 32063310 DOI: 10.1016/j.jenvman.2019.109933] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2019] [Revised: 11/23/2019] [Accepted: 11/25/2019] [Indexed: 06/10/2023]
Abstract
The surface of leaf, also known as phyllosphere, harbors diverse microbial communities which include both beneficial microorganisms promoting plants growth and harmful microorganisms, such as plant pathogens and human pathogens. Several studies have investigated the interaction between plants and human pathogens, while few works have focused on the quantitative analysis of pathogenic bacteria. On the basis of real-time polymerase chain reaction (qPCR), this study aimed to evaluate the abundance of following genes: the nuc and pvl of Staphylococcus aureus, the lytA and psaA of Streptococcus pneumoniae, and the ttr and invA of Salmonella enterica in the phyllosphere of four landscape plants (Nandina domestica, Rhododendron pulchrum, Photinia serrulata, and Cinnamomum camphora) growing in two habitats. Our results indicated that the relative abundance of pathogenic genes in the phyllosphere ranged from 10-9 to 10-6. The specific genes of S. aureus, S. pneumoniae and S. enterica in landscape plants were pvl, lytA and ttr, respectively. The two pathogenic genes of S. pneumoniae and the 16S rRNA gene were mainly affected by habitats, host species, and habitats-species interaction. Moreover, for the abundance of lytA and 16S rRNA, results showed that plants present in roadside with traffic pollution were relatively higher than that of campus with less pollution. The N. domestica and C. camphora were recommended for planting along the roadsides due to lower abundance of pathogenic genes. However, we have observed no significant difference in the abundance of pathogenic genes among four plants in the campus. Thereby, this study provided a valuable reference for selecting landscape plants in view of human health.
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Affiliation(s)
- Dandan Zhao
- School of Resources and Environmental Engineering, Anhui University, Hefei, Anhui Province, 230601, China; Key Laboratory of Wetland Ecological Protection and Restoration, China; Anhui Province Engineering Laboratory for Mine Ecological Remediation, China
| | - Guijia Liu
- School of Resources and Environmental Engineering, Anhui University, Hefei, Anhui Province, 230601, China; Key Laboratory of Wetland Ecological Protection and Restoration, China; Anhui Province Engineering Laboratory for Mine Ecological Remediation, China
| | - Xuefei Wang
- School of Resources and Environmental Engineering, Anhui University, Hefei, Anhui Province, 230601, China; Key Laboratory of Wetland Ecological Protection and Restoration, China; Anhui Province Engineering Laboratory for Mine Ecological Remediation, China
| | - Umar Daraz
- School of Resources and Environmental Engineering, Anhui University, Hefei, Anhui Province, 230601, China; Key Laboratory of Wetland Ecological Protection and Restoration, China; Anhui Province Engineering Laboratory for Mine Ecological Remediation, China
| | - Qingye Sun
- School of Resources and Environmental Engineering, Anhui University, Hefei, Anhui Province, 230601, China; Key Laboratory of Wetland Ecological Protection and Restoration, China; Anhui Province Engineering Laboratory for Mine Ecological Remediation, China.
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27
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Liddicoat C, Sydnor H, Cando-Dumancela C, Dresken R, Liu J, Gellie NJC, Mills JG, Young JM, Weyrich LS, Hutchinson MR, Weinstein P, Breed MF. Naturally-diverse airborne environmental microbial exposures modulate the gut microbiome and may provide anxiolytic benefits in mice. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 701:134684. [PMID: 31704402 DOI: 10.1016/j.scitotenv.2019.134684] [Citation(s) in RCA: 79] [Impact Index Per Article: 19.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Revised: 09/25/2019] [Accepted: 09/26/2019] [Indexed: 05/14/2023]
Abstract
Growing epidemiological evidence links natural green space exposure with a range of health benefits, including for mental health. Conversely, greater urbanisation associates with increased risk of mental health disorders. Microbiomes are proposed as an important but understudied link that may help explain many green space-human health associations. However, there remains a lack of controlled experimental evidence testing possible beneficial effects from passive exposure to natural biodiversity via airborne microbiota. Previous mouse model studies have used unrealistic environmental microbial exposures-including excessive soil and organic matter contact, feed supplements and injections-to demonstrate host microbiota, immune biomarker, and behavioural changes. Here, in a randomised controlled experiment, we demonstrate that realistic exposures to trace-level dust from a high biodiversity soil can change mouse gut microbiota, in comparison to dust from low biodiversity soil or no soil (control) (n = 54 total mice, comprising 3 treatments × 18 mice, with 9 females + 9 males per group). Furthermore, we found a nominal soil-derived anaerobic spore-forming butyrate-producer, Kineothrix alysoides, was supplemented to a greater extent in the gut microbiomes of high biodiversity treatment mice. Also, increasing relative abundance of this rare organism correlated with reduced anxiety-like behaviour in the most anxious mice. Our results point to an intriguing new hypothesis: that biodiverse soils may represent an important supplementary source of butyrate-producing bacteria capable of resupplying the mammalian gut microbiome, with potential for gut health and mental health benefits. Our findings have potential to inform cost-effective population health interventions through microbiome-conscious green space design and, ultimately, the mainstreaming of biodiversity into health care.
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Affiliation(s)
- Craig Liddicoat
- School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, South Australia 5005, Australia.
| | - Harrison Sydnor
- School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Christian Cando-Dumancela
- School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Romy Dresken
- School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Jiajun Liu
- Adelaide Medical School, The University of Adelaide, Adelaide, South Australia 5005, Australia; Australian Research Council Centre of Excellence for Nanoscale BioPhotonics, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Nicholas J C Gellie
- School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Jacob G Mills
- School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Jennifer M Young
- School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, South Australia 5005, Australia; College of Science and Engineering, Flinders University, Bedford Park, South Australia 5042, Australia
| | - Laura S Weyrich
- Australian Centre for Ancient DNA, The University of Adelaide, Adelaide, South Australia 5005, Australia; Australian Research Council Centre of Excellence for Australian Biodiversity and Heritage, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Mark R Hutchinson
- Adelaide Medical School, The University of Adelaide, Adelaide, South Australia 5005, Australia; Australian Research Council Centre of Excellence for Nanoscale BioPhotonics, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Philip Weinstein
- School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Martin F Breed
- School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, South Australia 5005, Australia; College of Science and Engineering, Flinders University, Bedford Park, South Australia 5042, Australia.
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28
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Ouyang W, Gao B, Cheng H, Zhang L, Wang Y, Lin C, Chen J. Airborne bacterial communities and antibiotic resistance gene dynamics in PM 2.5 during rainfall. ENVIRONMENT INTERNATIONAL 2020; 134:105318. [PMID: 31726367 DOI: 10.1016/j.envint.2019.105318] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Revised: 11/05/2019] [Accepted: 11/06/2019] [Indexed: 06/10/2023]
Abstract
The biotoxicity and public health effects of airborne bacteria and antibiotic resistance genes (ARGs) in fine particulate matter (PM2.5) are being increasingly recognized. The characteristics of bacterial community composition and ARGs in PM2.5 under different rainfall conditions were studied based on the on-site synchronous measurements in downtown Beijing. Marked differences were evident in the bacterial community characteristics of PM2.5 before, during, and after rain events (p < 0.05). The rain intensities affected the bacterial community abundance in PM2.5 and heavy rain had greater washing effects. The Proteobacteria (phylum level), α-Proteobacteria (class level), Pseudomonadales (order level), Pseudomonadaceae (family level), and Cyanobacteria (genus level) were the dominant bacterial taxa associated with PM2.5 in Beijing during rain events. However, the bacteria at each level that displayed the biggest percentage variance was not the dominant type under different rain intensities. The ermB, tetW, and mphE genes were the primary ARGs, with abundances of 18 to 30 copies/m3, which was a relatively smaller value than other observations. Real-time monitoring of the meteorological condition of rain events and physicochemical properties of PM2.5 were used to identify the main factors during rainfall. The bacterial community was sensitive to the ionic and metal element components of PM2.5 during rainfall. The abundance of ARGs was closely correlated with some groups of the bacterial community, which were also close to the initial value before the rain. Statistical analysis demonstrated that temperature, relative humidity, and duration of rain were the primary meteorological factors for the biological characteristics. The ionic species, rather than metal elements, in PM2.5 were the sensitive factors for the bacteria community and ARGs, which varied at the phylum, class, order, family, and genus levels. The observations provide insights for the biological risk assessment in an urban rainfall water and the potential health impact on citizens.
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Affiliation(s)
- Wei Ouyang
- School of Environment, State Key Laboratory of Water Environment Simulation, Beijing Normal University, Beijing 100875, China.
| | - Bing Gao
- School of Environment, State Key Laboratory of Water Environment Simulation, Beijing Normal University, Beijing 100875, China
| | - Hongguang Cheng
- School of Environment, State Key Laboratory of Water Environment Simulation, Beijing Normal University, Beijing 100875, China
| | - Lei Zhang
- School of Environment, State Key Laboratory of Water Environment Simulation, Beijing Normal University, Beijing 100875, China
| | - Yidi Wang
- School of Environment, State Key Laboratory of Water Environment Simulation, Beijing Normal University, Beijing 100875, China
| | - Chunye Lin
- School of Environment, State Key Laboratory of Water Environment Simulation, Beijing Normal University, Beijing 100875, China
| | - Jing Chen
- School of Environment, State Key Laboratory of Water Environment Simulation, Beijing Normal University, Beijing 100875, China; Center of Atmospheric Environmental Studies, Beijing Normal University, Beijing 100875, China
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29
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Accessing the Life in Smoke: A New Application of Unmanned Aircraft Systems (UAS) to Sample Wildland Fire Bioaerosol Emissions and Their Environment. FIRE-SWITZERLAND 2019. [DOI: 10.3390/fire2040056] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Wildland fire is a major producer of aerosols from combustion of vegetation and soils, but little is known about the abundance and composition of smoke’s biological content. Bioaerosols, or aerosols derived from biological sources, may be a significant component of the aerosol load vectored in wildland fire smoke. If bioaerosols are injected into the upper troposphere via high-intensity wildland fires and transported across continents, there may be consequences for the ecosystems they reach. Such transport would also alter the concept of a wildfire’s perimeter and the disturbance domain of its impact. Recent research has revealed that viable microorganisms are directly aerosolized during biomass combustion, but sampling systems and methodology for quantifying this phenomenon are poorly developed. Using a series of prescribed fires in frequently burned forest ecosystems, we report the results of employing a small rotary-wing unmanned aircraft system (UAS) to concurrently sample aerosolized bacteria and fungi, particulate matter, and micrometeorology in smoke plumes versus background conditions. Airborne impaction-based bioaerosol sampling indicated that microbial composition differed between background air and smoke, with seven unique organisms in smoke vs. three in background air. The air temperature was negatively correlated with the number of fungal colony-forming units detected. Our results demonstrate the utility of a UAS-based sampling platform for active sampling of viable aerosolized microbes in smoke arising from wildland fires. This methodology can be extended to sample viable microbes in a wide variety of emissions sampling pursuits, especially those in hazardous and inaccessible environments.
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30
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Liddicoat C, Weinstein P, Bissett A, Gellie NJC, Mills JG, Waycott M, Breed MF. Can bacterial indicators of a grassy woodland restoration inform ecosystem assessment and microbiota-mediated human health? ENVIRONMENT INTERNATIONAL 2019; 129:105-117. [PMID: 31125730 DOI: 10.1016/j.envint.2019.05.011] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Revised: 05/05/2019] [Accepted: 05/06/2019] [Indexed: 05/21/2023]
Abstract
Understanding how microbial communities change with environmental degradation and restoration may offer new insights into the understudied ecology that connects humans, microbiota, and the natural world. Immunomodulatory microbial diversity and 'Old Friends' are thought to be supplemented from biodiverse natural environments, yet deficient in anthropogenically disturbed or degraded environments. However, few studies have compared the microbiomes of natural vs. human-altered environments and there is little knowledge of which microbial taxa are representative of ecological restoration-i.e. the assisted recovery of degraded ecosystems typically towards a more natural, biodiverse state. Here we use novel bootstrap-style resampling of site-level soil bacterial 16S rRNA gene environmental DNA data to identify genus-level indicators of restoration from a 10-year grassy eucalypt woodland restoration chronosequence at Mt Bold, South Australia. We found two key indicator groups emerged: 'opportunistic taxa' that decreased in relative abundance with restoration and more stable and specialist, 'niche-adapted taxa' that increased. We validated these results, finding seven of the top ten opportunists and eight of the top ten niche-adapted taxa displayed consistent differential abundance patterns between human-altered vs. natural samples elsewhere across Australia. Extending this, we propose a two-dimensional mapping for ecosystem condition based on the proportions of these divergent indicator groups. We also show that restoring a more biodiverse ecosystem at Mt Bold has increased the potentially immune-boosting environmental microbial diversity. Furthermore, environmental opportunists including the pathogen-containing genera Bacillus, Clostridium, Enterobacter, Legionella and Pseudomonas associated with disturbed ecosystems. Our approach is generalizable with potential to inform DNA-based methods for ecosystem assessment and help target environmental interventions that may promote microbiota-mediated human health gains.
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Affiliation(s)
- Craig Liddicoat
- School of Biological Sciences and the Environment Institute, The University of Adelaide, SA 5005, Australia.
| | - Philip Weinstein
- School of Biological Sciences and the Environment Institute, The University of Adelaide, SA 5005, Australia.
| | - Andrew Bissett
- CSIRO Oceans and Atmosphere, Hobart, TAS, 7000, Australia.
| | - Nicholas J C Gellie
- School of Biological Sciences and the Environment Institute, The University of Adelaide, SA 5005, Australia.
| | - Jacob G Mills
- School of Biological Sciences and the Environment Institute, The University of Adelaide, SA 5005, Australia.
| | - Michelle Waycott
- School of Biological Sciences and the Environment Institute, The University of Adelaide, SA 5005, Australia.
| | - Martin F Breed
- School of Biological Sciences and the Environment Institute, The University of Adelaide, SA 5005, Australia.
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31
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Dust-Associated Airborne Microbes Affect Primary and Bacterial Production Rates, and Eukaryotes Diversity, in the Northern Red Sea: A Mesocosm Approach. ATMOSPHERE 2019. [DOI: 10.3390/atmos10070358] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The northern Red Sea (NRS) is a low-nutrient, low-chlorophyll (LNLC) ecosystem with high rates of atmospheric deposition due to its proximity to arid regions. Impacts of atmospheric deposition on LNLC ecosystems have been attributed to the chemical constituents of dust, while overlooking bioaerosols. Understanding how these vast areas of the ocean will respond to future climate and anthropogenic change hinges on the response of microbial communities to these changes. We tested the impacts of bioaerosols on the surface water microbial diversity and the primary and bacterial production rates in the NRS, a system representative of other LNLC oceanic regions, using a mesocosm bioassay experiment. By treating NRS surface seawater with dust, which contained nutrients, metals, and viable organisms, and “UV-treated dust” (which contained only nutrients and metals), we were able to assess the impacts of bioaerosols on local natural microbial populations. Following amendments (20 and 44 h) the incubations treated with “live dust” showed different responses than those with UV-treated dust. After 44 h, primary production was suppressed (as much as 50%), and bacterial production increased (as much as 55%) in the live dust treatments relative to incubations amended with UV-treated dust or the control. The diversity of eukaryotes was lower in treatments with airborne microbes. These results suggest that the airborne microorganisms and viruses alter the surface microbial ecology of the NRS. These results may have implications for the carbon cycle in LNLC ecosystems, which are expanding and are especially important since dust storms are predicted to increase in the future due to desertification and expansion of arid regions.
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The Relationship between Air-Mass Trajectories and the Abundance of Dust-Borne Prokaryotes at the SE Mediterranean Sea. ATMOSPHERE 2019. [DOI: 10.3390/atmos10050280] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Airborne prokaryotes are transported along with dust/aerosols, yet very little attention is given to their temporal variability above the oceans and the factors that govern their abundance. We analyzed the abundance of autotrophic (cyanobacteria) and heterotopic airborne microbes in 34 sampling events between 2015–2018 at a coastal site in the SE Mediterranean Sea. We show that airborne autotrophic (0.2–7.6 cells × 103 m−3) and heterotrophic (0.2–30.6 cells × 103 m−3) abundances were affected by the origin and air mass trajectory, and the concentration of dust/aerosols in the air, while seasonality was not coherent. The averaged ratio between heterotrophic and autotrophic prokaryotes in marine-dominated trajectories was ~1.7 ± 0.6, significantly lower than for terrestrial routes (6.8 ± 6.1). Airborne prokaryotic abundances were linearly and positively correlated to the concentrations of total aerosol, while negatively correlated with the aerosol’s anthropogenic fraction (using Pb/Al or Cu/Al ratios as proxies). While aerosols may play a major role in dispersing terrestrial and marine airborne microbes in the SE Mediterranean Sea, the mechanisms involved in the dispersal and diversity of airborne microorganisms remain to be studied and should include standardization in collection and analysis protocols.
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Kalisa E, Archer S, Nagato E, Bizuru E, Lee K, Tang N, Pointing S, Hayakawa K, Lacap-Bugler D. Chemical and Biological Components of Urban Aerosols in Africa: Current Status and Knowledge Gaps. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2019; 16:E941. [PMID: 30875989 PMCID: PMC6466367 DOI: 10.3390/ijerph16060941] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Revised: 03/08/2019] [Accepted: 03/09/2019] [Indexed: 12/22/2022]
Abstract
Aerosolized particulate matter (PM) is a complex mixture that has been recognized as the greatest cause of premature human mortality in low- and middle-income countries. Its toxicity arises largely from its chemical and biological components. These include polycyclic aromatic hydrocarbons (PAHs) and their nitro-derivatives (NPAHs) as well as microorganisms. In Africa, fossil fuel combustion and biomass burning in urban settings are the major sources of human exposure to PM, yet data on the role of aerosols in disease association in Africa remains scarce. This review is the first to examine studies conducted in Africa on both PAHs/NPAHs and airborne microorganisms associated with PM. These studies demonstrate that PM exposure in Africa exceeds World Health Organization (WHO) safety limits and carcinogenic PAHs/NPAHs and pathogenic microorganisms are the major components of PM aerosols. The health impacts of PAHs/NPAHs and airborne microbial loadings in PM are reviewed. This will be important for future epidemiological evaluations and may contribute to the development of effective management strategies to improve ambient air quality in the African continent.
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Affiliation(s)
- Egide Kalisa
- Institute for Applied Ecology New Zealand, School of Science, Auckland University of Technology, Auckland 1142, New Zealand.
- School of Sciences, College of Science and Technology, University of Rwanda, P.O. Box 4285, Kigali, Rwanda.
| | - Stephen Archer
- Institute for Applied Ecology New Zealand, School of Science, Auckland University of Technology, Auckland 1142, New Zealand.
| | - Edward Nagato
- Institute of Natural and Environmental Technology, Kanazawa University, Kakuma-machi, Kanazawa, Ishikawa 920-1192, Japan.
| | - Elias Bizuru
- School of Sciences, College of Science and Technology, University of Rwanda, P.O. Box 4285, Kigali, Rwanda.
| | - Kevin Lee
- Institute for Applied Ecology New Zealand, School of Science, Auckland University of Technology, Auckland 1142, New Zealand.
| | - Ning Tang
- Institute of Natural and Environmental Technology, Kanazawa University, Kakuma-machi, Kanazawa, Ishikawa 920-1192, Japan.
| | - Stephen Pointing
- Yale NUS-College and Department of Biological Sciences, National University of Singapore, Singapore 138527, Singapore.
| | - Kazuichi Hayakawa
- Institute of Natural and Environmental Technology, Kanazawa University, Kakuma-machi, Kanazawa, Ishikawa 920-1192, Japan.
| | - Donnabella Lacap-Bugler
- Institute for Applied Ecology New Zealand, School of Science, Auckland University of Technology, Auckland 1142, New Zealand.
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Alsved M, Holm S, Christiansen S, Smidt M, Rosati B, Ling M, Boesen T, Finster K, Bilde M, Löndahl J, Šantl-Temkiv T. Effect of Aerosolization and Drying on the Viability of Pseudomonas syringae Cells. Front Microbiol 2018; 9:3086. [PMID: 30619167 PMCID: PMC6305290 DOI: 10.3389/fmicb.2018.03086] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2018] [Accepted: 11/29/2018] [Indexed: 11/13/2022] Open
Abstract
Airborne dispersal of microorganisms influences their biogeography, gene flow, atmospheric processes, human health and transmission of pathogens that affect humans, plants and animals. The extent of their impact depends essentially on cell-survival rates during the process of aerosolization. A central factor for cell-survival is water availability prior to and upon aerosolization. Also, the ability of cells to successfully cope with stress induced by drying determines their chances of survival. In this study, we used the ice-nucleation active, plant pathogenic Pseudomonas syringae strain R10.79 as a model organism to investigate the effect of drying on cell survival. Two forms of drying were simulated: drying of cells in small droplets aerosolized from a wet environment by bubble bursting and drying of cells in large droplets deposited on a surface. For drying of cells both in aerosol and surface droplets, the relative humidity (RH) was varied in the range between 10 and 90%. The fraction of surviving cells was determined by live/dead staining followed by flow cytometry. We also evaluated the effect of salt concentration in the water droplets on the survival of drying cells by varying the ionic strength between 0 and 700 mM using NaCl and sea salt. For both aerosol and surface drying, cell survival increased with decreasing RH (p < 0.01), and for surface drying, survival was correlated with increasing salt concentration (p < 0.001). Imaging cells with TEM showed shrunk cytoplasm and cell wall damage for a large fraction of aerosolized cells. Ultimately, we observed a 10-fold higher fraction of surviving cells when dried as aerosol compared to when dried on a surface. We conclude that the conditions, under which cells dry, significantly affect their survival and thus their success to spread through the atmosphere and colonize new environments as well as their ability to affect atmospheric processes.
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Affiliation(s)
- Malin Alsved
- Ergonomics and Aerosol Technology, Department of Design Sciences, Lund University, Lund, Sweden.,NanoLund, Lund University, Lund, Sweden
| | - Stine Holm
- Department of Physics and Astronomy, Stellar Astrophysics Centre, Aarhus University, Aarhus, Denmark.,Microbiology Section, Department of Bioscience, Aarhus University, Aarhus, Denmark
| | - Sigurd Christiansen
- Atmospheric Physical Chemistry, Department of Chemistry, Aarhus University, Aarhus, Denmark
| | - Mads Smidt
- Department of Physics and Astronomy, Stellar Astrophysics Centre, Aarhus University, Aarhus, Denmark.,Microbiology Section, Department of Bioscience, Aarhus University, Aarhus, Denmark
| | - Bernadette Rosati
- Atmospheric Physical Chemistry, Department of Chemistry, Aarhus University, Aarhus, Denmark
| | - Meilee Ling
- Department of Physics and Astronomy, Stellar Astrophysics Centre, Aarhus University, Aarhus, Denmark.,Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark
| | - Thomas Boesen
- Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark
| | - Kai Finster
- Department of Physics and Astronomy, Stellar Astrophysics Centre, Aarhus University, Aarhus, Denmark.,Microbiology Section, Department of Bioscience, Aarhus University, Aarhus, Denmark
| | - Merete Bilde
- Atmospheric Physical Chemistry, Department of Chemistry, Aarhus University, Aarhus, Denmark
| | - Jakob Löndahl
- Ergonomics and Aerosol Technology, Department of Design Sciences, Lund University, Lund, Sweden.,NanoLund, Lund University, Lund, Sweden
| | - Tina Šantl-Temkiv
- Ergonomics and Aerosol Technology, Department of Design Sciences, Lund University, Lund, Sweden.,Department of Physics and Astronomy, Stellar Astrophysics Centre, Aarhus University, Aarhus, Denmark.,Microbiology Section, Department of Bioscience, Aarhus University, Aarhus, Denmark
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35
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A long-term survey unveils strong seasonal patterns in the airborne microbiome coupled to general and regional atmospheric circulations. Proc Natl Acad Sci U S A 2018; 115:12229-12234. [PMID: 30420511 DOI: 10.1073/pnas.1812826115] [Citation(s) in RCA: 96] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Airborne microbes (bacteria, archaea, protists, and fungi) were surveyed over a 7-y period via high-throughput massive sequencing of 16S and 18S rRNA genes in rain and snow samples collected fortnightly at a high-elevation mountain Long-Term Ecological Research (LTER) Network site (LTER-Aigüestortes, Central Pyrenees, Spain). This survey constitutes the most comprehensive mountain-top aerobiology study reported to date. The air mass origins were tracked through modeled back-trajectories and analysis of rain water chemical composition. Consistent microbial seasonal patterns were observed with highly divergent summer and winter communities recurrent in time. Indicative microbial taxa were unveiled as a forensic signature, and ubiquitous taxa were observed as common atmosphere inhabitants, highlighting aerosols as a potentially successful mechanism for global microbial dispersal. Source-tracking analyses identified freshwater, cropland, and urban biomes as the most important sources for airborne bacteria in summer, while marine and forest biomes prevailed in winter, in agreement with air mass retrotrajectories and the prevailing general and regional atmospheric circulation.
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36
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Pietsch RB, Grothe H, Hanlon R, Powers CW, Jung S, Ross SD, Schmale Iii DG. Wind-driven spume droplet production and the transport of Pseudomonas syringae from aquatic environments. PeerJ 2018; 6:e5663. [PMID: 30280035 PMCID: PMC6163035 DOI: 10.7717/peerj.5663] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Accepted: 08/28/2018] [Indexed: 12/04/2022] Open
Abstract
Natural aquatic environments such as oceans, lakes, and rivers are home to a tremendous diversity of microorganisms. Some may cross the air-water interface within droplets and become airborne, with the potential to impact the Earth’s radiation budget, precipitation processes, and spread of disease. Larger droplets are likely to return to the water or adjacent land, but smaller droplets may be suspended in the atmosphere for transport over long distances. Here, we report on a series of controlled laboratory experiments to quantify wind-driven droplet production from a freshwater source for low wind speeds. The rate of droplet production increased quadratically with wind speed above a critical value (10-m equivalent 5.7 m/s) where droplet production initiated. Droplet diameter and ejection speeds were fit by a gamma distribution. The droplet mass flux and momentum flux increased with wind speed. Two mechanisms of droplet production, bubble bursting and fragmentation, yielded different distributions for diameter, speed, and angle. At a wind speed of about 3.5 m/s, aqueous suspensions of the ice-nucleating bacterium Pseudomonas syringae were collected at rates of 283 cells m−2 s−1 at 5 cm above the water surface, and at 14 cells m−2 s−1 at 10 cm above the water surface. At a wind speed of about 4.0 m/s, aqueous suspensions of P. syringae were collected at rates of 509 cells m−2 s−1 at 5 cm above the water surface, and at 81 cells m−2 s−1 at 10 cm above the water surface. The potential for microbial flux into the atmosphere from aquatic environments was calculated using known concentrations of bacteria in natural freshwater systems. Up to 3.1 × 104 cells m−2 s−1 of water surface were estimated to leave the water in potentially suspended droplets (diameters <100 µm). Understanding the sources and mechanisms for bacteria to aerosolize from freshwater aquatic sources may aid in designing management strategies for pathogenic bacteria, and could shed light on how bacteria are involved in mesoscale atmospheric processes.
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Affiliation(s)
- Renee B Pietsch
- Biological Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America
| | - Hinrich Grothe
- School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America.,Institute of Materials Chemistry (E165), TU Wien, Vienna, Austria
| | - Regina Hanlon
- School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America
| | - Craig W Powers
- Civil and Environmental Engineering, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America
| | - Sunghwan Jung
- Biomedical Engineering and Mechanics, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America
| | - Shane D Ross
- Biomedical Engineering and Mechanics, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America
| | - David G Schmale Iii
- School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America
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37
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Phytoplankton and Bacterial Response to Desert Dust Deposition in the Coastal Waters of the Southeastern Mediterranean Sea: A Four-Year In Situ Survey. ATMOSPHERE 2018. [DOI: 10.3390/atmos9080305] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Atmospheric dust/aerosol deposition is an important source of external nutrients for the surface of the ocean. This study shows high-resolution observational data gathered in situ over a period of four years on bacterial and phytoplankton abundance and activity during typical background atmospheric conditions and during intense dust storm events in the low-nutrient, low-chlorophyll (LNLC) coastal waters of the southeastern Mediterranean Sea (SEMS). Chlorophyll a (an estimate for phytoplankton biomass) and bacterial abundance show moderate changes in response to dust deposition/events (−10% and +20%, respectively), while primary production, bacterial production, and N2 fixation rates were all significantly and positively affected by deposition (+25 to +40%; p < 0.05). The rapid changes in bacterial and/or phytoplankton rate parameters suggest that the released micro-/macronutrients from atmospheric deposition are tunneled directly in metabolic processes and, to a lesser extent, for biomass accumulation. The predicted expansion of LNLC areas in oceans in the future, and the projected increase in dust emission due to desertification, may affect the production of marine microbial communities in the surface of the ocean, yet only moderately affect their biomass or standing stock. Such alterations may impact carbon sequestration to the deep ocean.
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38
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Behzad H, Mineta K, Gojobori T. Global Ramifications of Dust and Sandstorm Microbiota. Genome Biol Evol 2018; 10:1970-1987. [PMID: 29961874 PMCID: PMC6097598 DOI: 10.1093/gbe/evy134] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/28/2018] [Indexed: 12/17/2022] Open
Abstract
Dust and sandstorm events inject substantial quantities of foreign microorganisms into global ecosystems, with the ability to impact distant environments. The majority of these microorganisms originate from deserts and drylands where the soil is laden with highly stress-resistant microbes capable of thriving under extreme environmental conditions, and a substantial portion of them survive long journeys through the atmosphere. This large-scale transmission of highly resilient alien microbial contaminants raises concerns with regards to the invasion of sensitive and/or pristine sink environments, and to human health-concerns exacerbated by increases in the rate of desertification. Further increases in the transport of dust-associated microbiota could extend the spread of foreign microbes to new ecosystems, increase their load in present sink environments, disrupt ecosystem balance, and potentially introduce new pathogens. Our present understanding of these microorganisms, their phylogenic affiliations and functional significance, is insufficient to determine their impact. The purpose of this review is to provide an overview of available data regarding dust and sandstorm microbiota and their potential ramifications on human and ecosystem health. We conclude by discussing current gaps in dust and sandstorm microbiota research, and the need for collaborative studies involving high-resolution meta-omic approaches in conjunction with extensive ecological time-series studies to advance the field towards an improved and sufficient understanding of these invisible atmospheric travelers and their global ramifications.
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Affiliation(s)
- Hayedeh Behzad
- King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal, Saudi Arabia
- King Abdullah University of Science and Technology (KAUST), Biological and Environmental Sciences and Engineering Division (BESE), Thuwal, Saudi Arabia
| | - Katsuhiko Mineta
- King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal, Saudi Arabia
- King Abdullah University of Science and Technology (KAUST), Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Thuwal, Saudi Arabia
| | - Takashi Gojobori
- King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal, Saudi Arabia
- King Abdullah University of Science and Technology (KAUST), Biological and Environmental Sciences and Engineering Division (BESE), Thuwal, Saudi Arabia
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39
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Liddicoat C, Bi P, Waycott M, Glover J, Breed M, Weinstein P. Ambient soil cation exchange capacity inversely associates with infectious and parasitic disease risk in regional Australia. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 626:117-125. [PMID: 29335166 DOI: 10.1016/j.scitotenv.2018.01.077] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Revised: 01/08/2018] [Accepted: 01/08/2018] [Indexed: 06/07/2023]
Abstract
Human contact with soil may be important for building and maintaining normal healthy immune defence mechanisms, however this idea remains untested at the population-level. In this continent-wide, cross-sectional study we examine the possible public health benefit of ambient exposures to soil of high cation exchange capacity (CEC), a surrogate for potential immunomodulatory soil microbial diversity. We compare distributions of normalized mean 2011/12-2012/13 age-standardized public hospital admission rates (cumulative incidence) for infectious and parasitic diseases across regional Australia (representing an average of 29,516 patients/year in 228 local government areas), within tertiles of socioeconomic status and soil exposure. To test the significance of soil CEC, we use probabilistic individual-level environmental exposure data (with or without soil), and group-level variables, in robust non-parametric multilevel modelling to predict disease rates in unseen groups. Our results show that in socioeconomically-deprived areas with high CEC soils, rates of infectious and parasitic disease are significantly lower than areas with low CEC soils. Also, health inequality (relative risk) due to socioeconomic status is significantly lower in areas with high CEC soils compared to low CEC soils (Δ relative risk = 0.47; 95% CI: 0.13, 0.82). Including soil exposure when modelling rates of infectious and parasitic disease significantly improves prediction performance, explaining an additional 7.5% (Δ r2 = 0.075; 95% CI: 0.05, 0.10) of variation in disease risk, in local government areas that were not used for model building. Our findings suggest that exposure to high CEC soils (typically high soil biodiversity) associates with reduced risk of infectious and parasitic diseases, particularly in lower socioeconomic areas.
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Affiliation(s)
- Craig Liddicoat
- School of Biological Sciences and The Environment Institute, The University of Adelaide, North Terrace, Adelaide, SA 5005, Australia.
| | - Peng Bi
- School of Public Health, The University of Adelaide, North Terrace, Adelaide, SA 5005, Australia
| | - Michelle Waycott
- School of Biological Sciences and The Environment Institute, The University of Adelaide, North Terrace, Adelaide, SA 5005, Australia; Department of Environment, Water and Natural Resources, GPO Box 1047, Adelaide, SA 5001, Australia
| | - John Glover
- Public Health Information Development Unit, Torrens University Australia, Level 1, 200 Victoria Square, Adelaide, SA 5000, Australia
| | - Martin Breed
- School of Biological Sciences and The Environment Institute, The University of Adelaide, North Terrace, Adelaide, SA 5005, Australia
| | - Philip Weinstein
- School of Biological Sciences and The Environment Institute, The University of Adelaide, North Terrace, Adelaide, SA 5005, Australia
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40
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Zhai Y, Li X, Wang T, Wang B, Li C, Zeng G. A review on airborne microorganisms in particulate matters: Composition, characteristics and influence factors. ENVIRONMENT INTERNATIONAL 2018; 113:74-90. [PMID: 29421410 DOI: 10.1016/j.envint.2018.01.007] [Citation(s) in RCA: 113] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2017] [Revised: 01/08/2018] [Accepted: 01/12/2018] [Indexed: 05/21/2023]
Abstract
Airborne microorganisms (AM), vital components of particulate matters (PM), are widespread in the atmosphere. Since some AM have pathogenicity, they can lead to a wide range of diseases in human and other organisms, meanwhile, some AM act as cloud condensation nuclei and ice nuclei which let them can affect the climate. The inherent characteristics of AM play critical roles in many aspects which, in turn, can decide microbial traits. The uncertain factors bring various influences on AM, which make it difficult to elaborate effect trends as whole. Because of the potential roles of AM in environment and potent effects of factors on AM, detailed knowledge of them is of primary significance. This review highlights the issues of composition and characteristics of AM with size-distribution, species diversity, variation and so on, and summarizes the main factors which affect airborne microbial features. This general information is a knowledge base for further thorough researches of AM and relevant aspects. Besides, current knowledge gaps and new perspectives are offered to roundly understand the impacts and application of AM in nature and human health.
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Affiliation(s)
- Yunbo Zhai
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China.
| | - Xue Li
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Tengfei Wang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Bei Wang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Caiting Li
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Guangming Zeng
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
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41
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Abrego N, Norros V, Halme P, Somervuo P, Ali-Kovero H, Ovaskainen O. Give me a sample of air and I will tell which species are found from your region: Molecular identification of fungi from airborne spore samples. Mol Ecol Resour 2018; 18:511-524. [PMID: 29330936 DOI: 10.1111/1755-0998.12755] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2017] [Revised: 01/02/2018] [Accepted: 01/03/2018] [Indexed: 11/26/2022]
Abstract
Fungi are a megadiverse group of organisms, they play major roles in ecosystem functioning and are important for human health, food production and nature conservation. Our knowledge on fungal diversity and fungal ecology is however still very limited, in part because surveying and identifying fungi is time demanding and requires expert knowledge. We present a method that allows anyone to generate a list of fungal species likely to occur in a region of interest, with minimal effort and without requiring taxonomical expertise. The method consists of using a cyclone sampler to acquire fungal spores directly from the air to an Eppendorf tube, and applying DNA barcoding with probabilistic species identification to generate a list of species from the sample. We tested the feasibility of the method by acquiring replicate air samples from different geographical regions within Finland. Our results show that air sampling is adequate for regional-level surveys, with samples collected >100 km apart varying but samples collected <10 km apart not varying in their species composition. The data show marked phenology, and thus obtaining a representative species list requires aerial sampling that covers the entire fruiting season. In sum, aerial sampling combined with probabilistic molecular species identification offers a highly effective method for generating a species list of air-dispersing fungi. The method presented here has the potential to revolutionize fungal surveys, as it provides a highly cost-efficient way to include fungi as a part of large-scale biodiversity assessments and monitoring programs.
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Affiliation(s)
- Nerea Abrego
- Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland
| | - Veera Norros
- Department of Biosciences, University of Helsinki, Helsinki, Finland.,Marine Research Centre, Finnish Environment Institute, Helsinki, Finland
| | - Panu Halme
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
| | - Panu Somervuo
- Department of Biosciences, University of Helsinki, Helsinki, Finland
| | - Heini Ali-Kovero
- Department of Biosciences, University of Helsinki, Helsinki, Finland
| | - Otso Ovaskainen
- Department of Biosciences, University of Helsinki, Helsinki, Finland.,Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway
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42
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Liddicoat C, Bi P, Waycott M, Glover J, Lowe AJ, Weinstein P. Landscape biodiversity correlates with respiratory health in Australia. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2018; 206:113-122. [PMID: 29059566 DOI: 10.1016/j.jenvman.2017.10.007] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2017] [Revised: 09/12/2017] [Accepted: 10/06/2017] [Indexed: 05/05/2023]
Abstract
Megatrends of urbanisation and reducing contact with natural environments may pose a largely unappreciated risk to human health, particularly in children, through declining normal (healthy) immunomodulatory environmental exposures. On the other hand, building knowledge of connections between environments, biodiversity and human health may offer new integrated ways of addressing global challenges of rising population health costs and declining biodiversity. In this study we are motivated to build insight and provide context and priority for emerging research into potential protective (e.g. immunomodulatory) environmental exposures. We use respiratory health as a test case to explore whether some types and qualities of environment may be more beneficial than others, and how such exposures may compare to known respiratory health influences, via a cross-sectional ecological epidemiology study for the continent of Australia. Using Lasso penalized regression (to interpret key predictors from many candidate variables) and 10-fold cross-validation modelling (to indicate reproducibility and uncertainty), within different socio-geographic settings, our results show surrogate measures of landscape biodiversity correlate with respiratory health, and rank amongst known predictors. A range of possible drivers for this relationship are discussed. Perhaps most novel and interesting of these is the possibility of protective immunomodulatory influence from microbial diversity (suggested by the understudied 'biodiversity hypothesis') and other bioactive agents associated with biodiverse environments. If beneficial influences can be demonstrated from biodiverse environments on immunomodulation and human health, there may be potential to design new cost-effective nature-based health intervention programs to reduce the risk of immune-related disease at a population level. Our approach and findings are also likely to have use in the evaluation of environment and health associations elsewhere.
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Affiliation(s)
- Craig Liddicoat
- School of Biological Sciences and the Environment Institute, The University of Adelaide, North Terrace, Adelaide, SA 5005, Australia; Department of Environment, Water and Natural Resources, GPO Box 1047, Adelaide, SA 5001, Australia.
| | - Peng Bi
- School of Public Health, The University of Adelaide, North Terrace, Adelaide, SA 5005, Australia
| | - Michelle Waycott
- School of Biological Sciences and the Environment Institute, The University of Adelaide, North Terrace, Adelaide, SA 5005, Australia; Department of Environment, Water and Natural Resources, GPO Box 1047, Adelaide, SA 5001, Australia
| | - John Glover
- Public Health Information Development Unit, Torrens University Australia, Level 1, 200 Victoria Square, Adelaide, SA 5000, Australia
| | - Andrew J Lowe
- School of Biological Sciences and the Environment Institute, The University of Adelaide, North Terrace, Adelaide, SA 5005, Australia
| | - Philip Weinstein
- School of Biological Sciences and the Environment Institute, The University of Adelaide, North Terrace, Adelaide, SA 5005, Australia
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43
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Zhen Q, Deng Y, Wang Y, Wang X, Zhang H, Sun X, Ouyang Z. Meteorological factors had more impact on airborne bacterial communities than air pollutants. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 601-602:703-712. [PMID: 28577405 DOI: 10.1016/j.scitotenv.2017.05.049] [Citation(s) in RCA: 87] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Revised: 04/30/2017] [Accepted: 05/05/2017] [Indexed: 05/27/2023]
Abstract
Airborne bacteria have gained increasing attention because they affect ecological balance and pose potential risks on human health. Recently, some studies have focused on the abundance and composition of airborne bacteria under heavy, hazy polluted weather in China, but they reached different conclusions about the comparisons with non-polluted days. In this study, we tested the hypothesis that meteorological factors could have a higher impact on shaping airborne bacterial communities than air pollutants by systematically monitoring the communities for 1year. Total suspended particles in Beijing were sampled for 20 consecutive days in each season of 2015. Bacterial abundance varied from 8.71×103 to 2.14×107 ribosomal operons per cubic meter according to the quantitative PCR analysis. There were relatively higher bacterial counts in spring and in autumn than in winter and summer. Airborne bacterial communities displayed a strong seasonality, according to the hierarchical cluster analysis. Only two exceptions overtook the seasonal trend, and both occurred in or after violent meteorological changes (sandstorm or rain). Aggregated boosted tree analysis performed on bacterial abundance showed that the dominant factors shaping bacterial communities were meteorological. They were air pressure in winter, air temperature and relative humidity in spring, RH in summer, and vapor pressure in autumn. Variation partition analysis on community structure showed that meteorological factors explained more variations than air pollutants. Therefore, both of the two models verified our hypothesis that the differences in airborne bacterial communities in polluted days or non-polluted days were mainly driven by the discrepancies of meteorological factors rather than by the presence of air pollutants.
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Affiliation(s)
- Quan Zhen
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ye Deng
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Yaqing Wang
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaoke Wang
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; Beijing Urban Ecosystem Research Station, State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Hongxing Zhang
- Beijing Urban Ecosystem Research Station, State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Xu Sun
- Beijing Urban Ecosystem Research Station, State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Zhiyun Ouyang
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
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44
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DasSarma P, DasSarma S. Survival of microbes in Earth's stratosphere. Curr Opin Microbiol 2017; 43:24-30. [PMID: 29156444 DOI: 10.1016/j.mib.2017.11.002] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2017] [Revised: 11/01/2017] [Accepted: 11/03/2017] [Indexed: 12/18/2022]
Abstract
The remarkable survival of microorganisms high above the surface of the Earth is of increasing interest. At stratospheric levels, multiple stressors including ultraviolet and ionizing radiation, low temperatures, hypobaric conditions, extreme desiccation, and nutrient scarcity are all significant challenges. Our understanding of which microorganisms are capable of tolerating such stressful conditions has been addressed by stratospheric sample collection and survival assays, through launching and recovery, and exposure to simulated conditions in the laboratory. Here, we review stratospheric microbiology studies providing our current perspective on microbial life at extremely high altitudes and discuss implications for health and agriculture, climate change, planetary protection, and astrobiology.
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Affiliation(s)
- Priya DasSarma
- University of Maryland School of Medicine and Institute of Marine and Environmental Technology, 701 East Pratt Street, Baltimore, MD 21202, USA
| | - Shiladitya DasSarma
- University of Maryland School of Medicine and Institute of Marine and Environmental Technology, 701 East Pratt Street, Baltimore, MD 21202, USA.
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45
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Innocente E, Squizzato S, Visin F, Facca C, Rampazzo G, Bertolini V, Gandolfi I, Franzetti A, Ambrosini R, Bestetti G. Influence of seasonality, air mass origin and particulate matter chemical composition on airborne bacterial community structure in the Po Valley, Italy. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 593-594:677-687. [PMID: 28363180 DOI: 10.1016/j.scitotenv.2017.03.199] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Revised: 03/02/2017] [Accepted: 03/21/2017] [Indexed: 05/26/2023]
Abstract
The integration of chemical and biological data in aerosol studies represents a new challenge in atmospheric science. In this perspective it will be possible to gain a clearer and deeper comprehension of biogeochemical cycles in the atmosphere. In this view, this study aimed to investigate the relationships occurring between bacterial populations and PM chemical composition in one of the most polluted and urbanized areas in Europe: the Po Valley (Italy). Moreover, seasonality, long- and short-range transports were also evaluated to investigate the influence on airborne bacterial communities. PM samples were collected in two cities of the Po Valley (Milan and Venice) characterized by different meteorological conditions and atmospheric pollutant sources. Samples were analysed for water-soluble inorganic ions (WSIIs) and bacterial community structure. Chemical and biological data were jointly processed by using redundancy discriminate analysis (RDA), while the influence of atmospheric circulation was evaluated by using wind ground data and back-trajectories analysis. Results showed strong seasonal shifts of bacterial community structure in both cities, while a different behaviour was observed for air mass circulation at Milan ad Venice sites: long-range transport significantly affected bacterial populations in Milan whereas local ground wind had more influence in the Venice area. Moreover, difference in taxonomic composition can be mostly addressed to the characteristics of sampling sites. This evidence could suggest that, while PM composition is influenced by long-range transport, bacterial populations are affected, besides transport, by other factors (i.e., season and sampling site location). This perspective allow to better understand and explain airborne bacterial community behaviour.
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Affiliation(s)
- Elena Innocente
- Department of Environmental Sciences, Informatics and Statistics (DAIS), Università Ca' Foscari Venezia, Campus Scientifico, Via Torino 155, 30172 Mestre, VE, Italy.
| | - Stefania Squizzato
- Department of Environmental Sciences, Informatics and Statistics (DAIS), Università Ca' Foscari Venezia, Campus Scientifico, Via Torino 155, 30172 Mestre, VE, Italy; Center for Air Resources Engineering and Science, Clarkson University, Box 5708, Potsdam, NY 13699-5708, USA
| | - Flavia Visin
- Department of Environmental Sciences, Informatics and Statistics (DAIS), Università Ca' Foscari Venezia, Campus Scientifico, Via Torino 155, 30172 Mestre, VE, Italy
| | - Chiara Facca
- Department of Environmental Sciences, Informatics and Statistics (DAIS), Università Ca' Foscari Venezia, Campus Scientifico, Via Torino 155, 30172 Mestre, VE, Italy
| | - Giancarlo Rampazzo
- Department of Environmental Sciences, Informatics and Statistics (DAIS), Università Ca' Foscari Venezia, Campus Scientifico, Via Torino 155, 30172 Mestre, VE, Italy
| | - Valentina Bertolini
- Department of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126 Milano, Italy
| | - Isabella Gandolfi
- Department of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126 Milano, Italy
| | - Andrea Franzetti
- Department of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126 Milano, Italy
| | - Roberto Ambrosini
- Department of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126 Milano, Italy
| | - Giuseppina Bestetti
- Department of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126 Milano, Italy
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46
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Mayol E, Arrieta JM, Jiménez MA, Martínez-Asensio A, Garcias-Bonet N, Dachs J, González-Gaya B, Royer SJ, Benítez-Barrios VM, Fraile-Nuez E, Duarte CM. Long-range transport of airborne microbes over the global tropical and subtropical ocean. Nat Commun 2017; 8:201. [PMID: 28779070 PMCID: PMC5544686 DOI: 10.1038/s41467-017-00110-9] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2016] [Accepted: 06/01/2017] [Indexed: 11/26/2022] Open
Abstract
The atmosphere plays a fundamental role in the transport of microbes across the planet but it is often neglected as a microbial habitat. Although the ocean represents two thirds of the Earth’s surface, there is little information on the atmospheric microbial load over the open ocean. Here we provide a global estimate of microbial loads and air-sea exchanges over the tropical and subtropical oceans based on the data collected along the Malaspina 2010 Circumnavigation Expedition. Total loads of airborne prokaryotes and eukaryotes were estimated at 2.2 × 1021 and 2.1 × 1021 cells, respectively. Overall 33–68% of these microorganisms could be traced to a marine origin, being transported thousands of kilometres before re-entering the ocean. Moreover, our results show a substantial load of terrestrial microbes transported over the oceans, with abundances declining exponentially with distance from land and indicate that islands may act as stepping stones facilitating the transoceanic transport of terrestrial microbes. The extent to which the ocean acts as a sink and source of airborne particles to the atmosphere is unresolved. Here, the authors report high microbial loads over the tropical Atlantic, Pacific and Indian oceans and propose islands as stepping stones for the transoceanic transport of terrestrial microbes..
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Affiliation(s)
- Eva Mayol
- Department of Global Change Research, Mediterranean Institute for Advanced Studies (IMEDEA), Spanish Council for Scientific Research - University of the Balearic Islands (CSIC-UIB), Esporles, Mallorca, Spain. .,Institute of Littoral, Environment and Societies (LIENSs), National Centre for Scientific Research (CNRS) - University of La Rochelle, La Rochelle, France.
| | - Jesús M Arrieta
- Department of Global Change Research, Mediterranean Institute for Advanced Studies (IMEDEA), Spanish Council for Scientific Research - University of the Balearic Islands (CSIC-UIB), Esporles, Mallorca, Spain.,King Abdullah University of Science and Technology, Red Sea Research Center, Thuwal, 23955-6900, Saudi Arabia.,Spanish Institute of Oceanography (IEO), Oceanographic Center of The Canary Islands, Santa Cruz de Tenerife, 38180, Spain
| | - Maria A Jiménez
- Department of Global Change Research, Mediterranean Institute for Advanced Studies (IMEDEA), Spanish Council for Scientific Research - University of the Balearic Islands (CSIC-UIB), Esporles, Mallorca, Spain.,Department of Physics, University of the Balearic Islands (UIB), Palma de Mallorca, Spain
| | - Adrián Martínez-Asensio
- Institute of Littoral, Environment and Societies (LIENSs), National Centre for Scientific Research (CNRS) - University of La Rochelle, La Rochelle, France.,Department of Physics, University of the Balearic Islands (UIB), Palma de Mallorca, Spain
| | - Neus Garcias-Bonet
- Department of Global Change Research, Mediterranean Institute for Advanced Studies (IMEDEA), Spanish Council for Scientific Research - University of the Balearic Islands (CSIC-UIB), Esporles, Mallorca, Spain.,King Abdullah University of Science and Technology, Red Sea Research Center, Thuwal, 23955-6900, Saudi Arabia
| | - Jordi Dachs
- Department of Environmental Chemistry, Institute of Environmental Assessment and Water Research - Spanish Council for Scientific Research (IDAEA-CSIC), Barcelona, Catalonia, Spain
| | - Belén González-Gaya
- Department of Environmental Chemistry, Institute of Environmental Assessment and Water Research - Spanish Council for Scientific Research (IDAEA-CSIC), Barcelona, Catalonia, Spain.,Department of Instrumental Analysis and Environmental Chemistry, Institute of Organic Chemistry - Spanish Council for Scientific Research (IQOG-CSIC), Madrid, Spain
| | - Sarah-J Royer
- Institute of Marine Sciences - Spanish Council for Scientific Research (ICM-CSIC), Barcelona, Catalonia, Spain.,Daniel K. Inouye Center for Microbial Oceanography, Research and Education, University of Hawaii at Manoa, Honolulu, USA
| | - Verónica M Benítez-Barrios
- Spanish Institute of Oceanography (IEO), Oceanographic Center of The Canary Islands, Santa Cruz de Tenerife, 38180, Spain.,OCEOMIC, Marine Bio and Technology S.L., Fuerteventura Technology Park, Puerto del Rosario, E35600, Spain
| | - Eugenio Fraile-Nuez
- Spanish Institute of Oceanography (IEO), Oceanographic Center of The Canary Islands, Santa Cruz de Tenerife, 38180, Spain
| | - Carlos M Duarte
- Department of Global Change Research, Mediterranean Institute for Advanced Studies (IMEDEA), Spanish Council for Scientific Research - University of the Balearic Islands (CSIC-UIB), Esporles, Mallorca, Spain.,King Abdullah University of Science and Technology, Red Sea Research Center, Thuwal, 23955-6900, Saudi Arabia
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47
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Gat D, Mazar Y, Cytryn E, Rudich Y. Origin-Dependent Variations in the Atmospheric Microbiome Community in Eastern Mediterranean Dust Storms. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2017; 51:6709-6718. [PMID: 28422476 DOI: 10.1021/acs.est.7b00362] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Microorganisms carried by dust storms are transported through the atmosphere and may affect human health and the functionality of microbial communities in various environments. Characterizing the dust-borne microbiome in dust storms of different origins or that followed different trajectories provides valuable data to improve our understanding of global health and environmental impacts. We present a comparative study on the diversity of dust-borne bacterial communities in dust storms from three distinct origins (North Africa, Syria and Saudi Arabia) and compare them with local bacterial communities sampled on clear days, all collected at a single location: Rehovot, Israel. Storms from different dust origins exhibited distinct bacterial communities, with signature bacterial taxa. Dust storms were characterized by a lower abundance of selected antibiotic resistance genes (ARGs) compared with ambient dust, asserting that the origin of these genes is local and possibly anthropogenic. With the progression of the storm, the storm-borne bacterial community showed increasing resemblance to ambient dust, suggesting mixing with local dust. These results show, for the first time, that dust storms from different sources display distinct bacterial communities, suggesting possible diverse effects on the environment and public health.
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Affiliation(s)
- Daniella Gat
- Department of Earth and Planetary Sciences, Weizmann Institute of Science , Rehovot 7610001, Israel
| | - Yinon Mazar
- Department of Earth and Planetary Sciences, Weizmann Institute of Science , Rehovot 7610001, Israel
| | - Eddie Cytryn
- Institute of Soil, Water and Environmental Sciences, The Volcani Center, Agriculture Research Organization , Rishon Lezion 7528809, Israel
| | - Yinon Rudich
- Department of Earth and Planetary Sciences, Weizmann Institute of Science , Rehovot 7610001, Israel
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48
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Weerasundara L, Amarasekara RWK, Magana-Arachchi DN, Ziyath AM, Karunaratne DGGP, Goonetilleke A, Vithanage M. Microorganisms and heavy metals associated with atmospheric deposition in a congested urban environment of a developing country: Sri Lanka. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 584-585:803-812. [PMID: 28185730 DOI: 10.1016/j.scitotenv.2017.01.121] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2016] [Revised: 01/17/2017] [Accepted: 01/18/2017] [Indexed: 06/06/2023]
Abstract
The presence of bacteria and heavy metals in atmospheric deposition were investigated in Kandy, Sri Lanka, which is a typical city in the developing world with significant traffic congestion. Atmospheric deposition samples were analyzed for Al, Cr, Mn, Fe, Ni, Cu, Zn, Cd and Pb which are heavy metals common to urban environments. Al and Fe were found in high concentrations due to the presence of natural sources, but may also be re-suspended by vehicular traffic. Relatively high concentrations of toxic metals such as Cr and Pb in dissolved form were also found. High Zn loads can be attributed to vehicular emissions and the wide use of Zn coated roofing materials. The metal loads in wet deposition showed higher concentrations compared to dry deposition. The metal concentrations among the different sampling sites significantly differ from each other depending on the traffic conditions. Industrial activities are not significant in Kandy City. Consequently, the traffic exerts high influence on heavy metal loadings. As part of the bacterial investigations, nine species of culturable bacteria, namely; Sphingomonas sp., Pseudomonas aeruginosa, Pseudomonas monteilii, Klebsiella pneumonia, Ochrobactrum intermedium, Leclercia adecarboxylata, Exiguobacterium sp., Bacillus pumilus and Kocuria kristinae, which are opportunistic pathogens, were identified. This is the first time Pseudomonas monteilii and Ochrobactrum intermedium has been reported from a country in Asia. The culturable fraction constituted ~0.01 to 10%. Pigmented bacteria and endospore forming bacteria were copious in the atmospheric depositions due to their capability to withstand harsh environmental conditions. The presence of pathogenic bacteria and heavy metals creates potential human and ecosystem health risk.
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Affiliation(s)
- Lakshika Weerasundara
- Environmental Chemodynamics Project, National Institute of Fundamental Studies, Kandy, Sri Lanka
| | - R W K Amarasekara
- Cell Biology, National Institute of Fundamental Studies, Kandy, Sri Lanka
| | | | - Abdul M Ziyath
- Science and Engineering Faculty, Queensland University of Technology (QUT), Brisbane, Australia
| | - D G G P Karunaratne
- Department of Chemical and Process Engineering, Faculty of Engineering, University of Peradeniya, Sri Lanka
| | - Ashantha Goonetilleke
- Science and Engineering Faculty, Queensland University of Technology (QUT), Brisbane, Australia
| | - Meththika Vithanage
- Environmental Chemodynamics Project, National Institute of Fundamental Studies, Kandy, Sri Lanka.
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49
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Bacterial diversity in fumarole environments of the Paricutín volcano, Michoacán (Mexico). Extremophiles 2017; 21:499-511. [DOI: 10.1007/s00792-017-0920-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2016] [Accepted: 02/13/2017] [Indexed: 10/20/2022]
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50
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Liddicoat C, Waycott M, Weinstein P. Environmental Change and Human Health: Can Environmental Proxies Inform the Biodiversity Hypothesis for Protective Microbial–Human Contact? Bioscience 2016. [DOI: 10.1093/biosci/biw127] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
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