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Yu H, Kotlyar M, Thuras P, Dufresne S, Pakhomov SV. Towards Predicting Smoking Events for Just-in-time Interventions. AMIA JOINT SUMMITS ON TRANSLATIONAL SCIENCE PROCEEDINGS. AMIA JOINT SUMMITS ON TRANSLATIONAL SCIENCE 2024; 2024:468-477. [PMID: 38827079 PMCID: PMC11141818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/04/2024]
Abstract
Consumer-grade heart rate (HR) sensors are widely used for tracking physical and mental health status. We explore the feasibility of using Polar H10 electrocardiogram (ECG) sensor to detect and predict cigarette smoking events in naturalistic settings with several machine learning approaches. We have collected and analyzed data for 28 participants observed over a two-week period. We found that using bidirectional long short-term memory (BiLSTM) with ECG-derived and GPS location input features yielded the highest mean accuracy of 69% for smoking event detection. For predicting smoking events, the highest accuracy of 67% was achieved using the fine-tuned LSTM approach. We also found a significant correlation between accuracy and the number of smoking events available from each participant. Our findings indicate that both detection and prediction of smoking events are feasible but require an individualized approach to training the models, particularly for prediction.
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Affiliation(s)
- Hang Yu
- University of Minnesota, Minneapolis, MN, United States
| | | | - Paul Thuras
- University of Minnesota, Minneapolis, MN, United States
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Siegel LN, Wiseman KP, Budenz A, Prutzman Y. Identifying Patterns of Smoking Cessation App Feature Use That Predict Successful Quitting: Secondary Analysis of Experimental Data Leveraging Machine Learning. JMIR AI 2024; 3:e51756. [PMID: 38875564 PMCID: PMC11153975 DOI: 10.2196/51756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 02/29/2024] [Accepted: 03/04/2024] [Indexed: 06/16/2024]
Abstract
BACKGROUND Leveraging free smartphone apps can help expand the availability and use of evidence-based smoking cessation interventions. However, there is a need for additional research investigating how the use of different features within such apps impacts their effectiveness. OBJECTIVE We used observational data collected from an experiment of a publicly available smoking cessation app to develop supervised machine learning (SML) algorithms intended to distinguish the app features that promote successful smoking cessation. We then assessed the extent to which patterns of app feature use accounted for variance in cessation that could not be explained by other known predictors of cessation (eg, tobacco use behaviors). METHODS Data came from an experiment (ClinicalTrials.gov NCT04623736) testing the impacts of incentivizing ecological momentary assessments within the National Cancer Institute's quitSTART app. Participants' (N=133) app activity, including every action they took within the app and its corresponding time stamp, was recorded. Demographic and baseline tobacco use characteristics were measured at the start of the experiment, and short-term smoking cessation (7-day point prevalence abstinence) was measured at 4 weeks after baseline. Logistic regression SML modeling was used to estimate participants' probability of cessation from 28 variables reflecting participants' use of different app features, assigned experimental conditions, and phone type (iPhone [Apple Inc] or Android [Google]). The SML model was first fit in a training set (n=100) and then its accuracy was assessed in a held-aside test set (n=33). Within the test set, a likelihood ratio test (n=30) assessed whether adding individuals' SML-predicted probabilities of cessation to a logistic regression model that included demographic and tobacco use (eg, polyuse) variables explained additional variance in 4-week cessation. RESULTS The SML model's sensitivity (0.67) and specificity (0.67) in the held-aside test set indicated that individuals' patterns of using different app features predicted cessation with reasonable accuracy. The likelihood ratio test showed that the logistic regression, which included the SML model-predicted probabilities, was statistically equivalent to the model that only included the demographic and tobacco use variables (P=.16). CONCLUSIONS Harnessing user data through SML could help determine the features of smoking cessation apps that are most useful. This methodological approach could be applied in future research focusing on smoking cessation app features to inform the development and improvement of smoking cessation apps. TRIAL REGISTRATION ClinicalTrials.gov NCT04623736; https://clinicaltrials.gov/study/NCT04623736.
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Affiliation(s)
- Leeann Nicole Siegel
- National Cancer Instiute, National Institutes of Health, Rockville, MD, United States
| | - Kara P Wiseman
- University of Virginia School of Medicine, Charlottesville, VA, United States
| | - Alex Budenz
- National Cancer Instiute, National Institutes of Health, Rockville, MD, United States
| | - Yvonne Prutzman
- National Cancer Instiute, National Institutes of Health, Rockville, MD, United States
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Balamurugan M, Meera DS. Hybrid optimized temporal convolutional networks with long short-term memory for heart disease prediction with deep features. Comput Methods Biomech Biomed Engin 2024:1-25. [PMID: 38584483 DOI: 10.1080/10255842.2024.2310075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Accepted: 01/10/2024] [Indexed: 04/09/2024]
Abstract
A heart attack is intended as top prevalent among all ruinous ailments. Day by day, the number of affected people count is increasing globally. The medical field is struggling to detect heart disease in the initial step. Early prediction can help patients to save their life. Thus, this paper implements a novel heart disease prediction model with the help of a hybrid deep learning strategy. The developed framework consists of various steps like (i) Data collection, (ii) Deep feature extraction, and (iii) Disease prediction. Initially, the standard medical data from various patients are acquired from the clinical standard datasets. Here, a One-Dimensional Convolutional Neural Network (1DCNN) is utilized for extracting the deep features from the acquired medical data to minimize the number of redundant data from the gathered large-scale data. The acquired deep features are directly fed to the Hybrid Optimized Deep Classifier (HODC) with the integration of Temporal Convolutional Networks (TCN) with Long Short-Term Memory (LSTM), where the parameters in both classifiers are optimized using the newly suggested Enhanced Forensic-Based Investigation (EFBI) inspired meta-optimization algorithm. Throughout the result analysis, the accuracy and precision rate of the offered approach is 98.67% and 99.48%. The evaluation outcomes show that the recommended system outperforms the extant systems in terms of performance metrics examination.
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Affiliation(s)
- M Balamurugan
- Research Scholar, Department of Computer Science and Engineering, Vels Institute of Science, Technology & Advanced Studies (VISTAS), Chennai, India
| | - Dr S Meera
- Associate Professor, Vels Institute of Science, Technology & Advanced Studies (VISTAS), Pallavaram, Chennai, Tamil Nadu, India
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Schneidergruber T, Blechert J, Arzt S, Pannicke B, Reichenberger J, Arend AK, Ginzinger S. Predicting food craving in everyday life through smartphone-derived sensor and usage data. Front Digit Health 2023; 5:1163386. [PMID: 37435352 PMCID: PMC10331138 DOI: 10.3389/fdgth.2023.1163386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 05/31/2023] [Indexed: 07/13/2023] Open
Abstract
Background Food craving relates to unhealthy eating behaviors such as overeating or binge eating and is thus a promising target for digital interventions. Yet, craving varies strongly across the day and is more likely in some contexts (external, internal) than in others. Prediction of food cravings ahead of time would enable preventive interventions. Objective The objective of this study was to investigate whether upcoming food cravings could be detected and predicted from passive smartphone sensor data (excluding geolocation information) without the need for repeated questionnaires. Methods Momentary food craving ratings, given six times a day for 14 days by 56 participants, served as the dependent variable. Predictor variables were environmental noise, light, device movement, screen activity, notifications, and time of the day recorded from 150 to 30 min prior to these ratings. Results Individual high vs. low craving ratings could be predicted on the test set with a mean area under the curve (AUC) of 0.78. This outperformed a baseline model trained on past craving values in 85% of participants by 14%. Yet, this AUC value is likely the upper bound and needs to be independently validated with longer data sets that allow a split into training, validation, and test sets. Conclusions Craving states can be forecast from external and internal circumstances as these can be measured through smartphone sensors or usage patterns in most participants. This would allow for just-in-time adaptive interventions based on passive data collection and hence with minimal participant burden.
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Affiliation(s)
- Thomas Schneidergruber
- Department Creative Technologies, University of Applied Sciences Salzburg, Salzburg, Austria
| | - Jens Blechert
- Department of Psychology, Paris-Lodron-University of Salzburg, Salzburg, Austria
- Centre for Cognitive Neuroscience, Paris-Lodron-University of Salzburg, Salzburg, Austria
| | - Samuel Arzt
- Department Creative Technologies, University of Applied Sciences Salzburg, Salzburg, Austria
| | - Björn Pannicke
- Department of Psychology, Paris-Lodron-University of Salzburg, Salzburg, Austria
- Centre for Cognitive Neuroscience, Paris-Lodron-University of Salzburg, Salzburg, Austria
| | - Julia Reichenberger
- Department of Psychology, Paris-Lodron-University of Salzburg, Salzburg, Austria
- Centre for Cognitive Neuroscience, Paris-Lodron-University of Salzburg, Salzburg, Austria
| | - Ann-Kathrin Arend
- Department of Psychology, Paris-Lodron-University of Salzburg, Salzburg, Austria
- Centre for Cognitive Neuroscience, Paris-Lodron-University of Salzburg, Salzburg, Austria
| | - Simon Ginzinger
- Department Creative Technologies, University of Applied Sciences Salzburg, Salzburg, Austria
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Luken A, Desjardins MR, Moran MB, Mendelson T, Zipunnikov V, Kirchner TR, Naughton F, Latkin C, Thrul J. Using Smartphone Survey and GPS Data to Inform Smoking Cessation Intervention Delivery: Case Study. JMIR Mhealth Uhealth 2023; 11:e43990. [PMID: 37327031 PMCID: PMC10337446 DOI: 10.2196/43990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 02/23/2023] [Accepted: 04/07/2023] [Indexed: 06/17/2023] Open
Abstract
BACKGROUND Interest in quitting smoking is common among young adults who smoke, but it can prove challenging. Although evidence-based smoking cessation interventions exist and are effective, a lack of access to these interventions specifically designed for young adults remains a major barrier for this population to successfully quit smoking. Therefore, researchers have begun to develop modern, smartphone-based interventions to deliver smoking cessation messages at the appropriate place and time for an individual. A promising approach is the delivery of interventions using geofences-spatial buffers around high-risk locations for smoking that trigger intervention messages when an individual's phone enters the perimeter. Despite growth in personalized and ubiquitous smoking cessation interventions, few studies have incorporated spatial methods to optimize intervention delivery using place and time information. OBJECTIVE This study demonstrates an exploratory method of generating person-specific geofences around high-risk areas for smoking by presenting 4 case studies using a combination of self-reported smartphone-based surveys and passively tracked location data. The study also examines which geofence construction method could inform a subsequent study design that will automate the process of deploying coping messages when young adults enter geofence boundaries. METHODS Data came from an ecological momentary assessment study with young adult smokers conducted from 2016 to 2017 in the San Francisco Bay area. Participants reported smoking and nonsmoking events through a smartphone app for 30 days, and GPS data was recorded by the app. We sampled 4 cases along ecological momentary assessment compliance quartiles and constructed person-specific geofences around locations with self-reported smoking events for each 3-hour time interval using zones with normalized mean kernel density estimates exceeding 0.7. We assessed the percentage of smoking events captured within geofences constructed for 3 types of zones (census blocks, 500 ft2 fishnet grids, and 1000 ft2 fishnet grids). Descriptive comparisons were made across the 4 cases to better understand the strengths and limitations of each geofence construction method. RESULTS The number of reported past 30-day smoking events ranged from 12 to 177 for the 4 cases. Each 3-hour geofence for 3 of the 4 cases captured over 50% of smoking events. The 1000 ft2 fishnet grid captured the highest percentage of smoking events compared to census blocks across the 4 cases. Across 3-hour periods except for 3:00 AM-5:59 AM for 1 case, geofences contained an average of 36.4%-100% of smoking events. Findings showed that fishnet grid geofences may capture more smoking events compared to census blocks. CONCLUSIONS Our findings suggest that this geofence construction method can identify high-risk smoking situations by time and place and has potential for generating individually tailored geofences for smoking cessation intervention delivery. In a subsequent smartphone-based smoking cessation intervention study, we plan to use fishnet grid geofences to inform the delivery of intervention messages.
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Affiliation(s)
- Amanda Luken
- Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States
| | - Michael R Desjardins
- Spatial Science for Public Health Center, Johns Hopkins University, Baltimore, MD, United States
- Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States
| | - Meghan B Moran
- Department of Health, Behavior and Society, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States
| | - Tamar Mendelson
- Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States
| | - Vadim Zipunnikov
- Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States
| | - Thomas R Kirchner
- Department of Social and Behavioral Sciences, New York University School of Global Public Health, New York, NY, United States
- Center for Urban Science and Progress, New York University Tandon School of Engineering, New York, NY, United States
| | - Felix Naughton
- Behavioural and Implementation Science Research Group, University of East Anglia, Norwich, United Kingdom
| | - Carl Latkin
- Department of Health, Behavior and Society, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States
| | - Johannes Thrul
- Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States
- Sidney Kimmel Comprehensive Cancer Center, Baltimore, MD, United States
- Centre for Alcohol Policy Research, La Trobe University, Melbourne, Australia
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Perski O, Li K, Pontikos N, Simons D, Goldstein SP, Naughton F, Brown J. Classification of Lapses in Smokers Attempting to Stop: A Supervised Machine Learning Approach Using Data From a Popular Smoking Cessation Smartphone App. Nicotine Tob Res 2023; 25:1330-1339. [PMID: 36971111 PMCID: PMC10256890 DOI: 10.1093/ntr/ntad051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 03/20/2023] [Accepted: 03/24/2023] [Indexed: 03/29/2023]
Abstract
INTRODUCTION Smoking lapses after the quit date often lead to full relapse. To inform the development of real time, tailored lapse prevention support, we used observational data from a popular smoking cessation app to develop supervised machine learning algorithms to distinguish lapse from non-lapse reports. AIMS AND METHODS We used data from app users with ≥20 unprompted data entries, which included information about craving severity, mood, activity, social context, and lapse incidence. A series of group-level supervised machine learning algorithms (eg, Random Forest, XGBoost) were trained and tested. Their ability to classify lapses for out-of-sample (1) observations and (2) individuals were evaluated. Next, a series of individual-level and hybrid algorithms were trained and tested. RESULTS Participants (N = 791) provided 37 002 data entries (7.6% lapses). The best-performing group-level algorithm had an area under the receiver operating characteristic curve (AUC) of 0.969 (95% confidence interval [CI] = 0.961 to 0.978). Its ability to classify lapses for out-of-sample individuals ranged from poor to excellent (AUC = 0.482-1.000). Individual-level algorithms could be constructed for 39/791 participants with sufficient data, with a median AUC of 0.938 (range: 0.518-1.000). Hybrid algorithms could be constructed for 184/791 participants and had a median AUC of 0.825 (range: 0.375-1.000). CONCLUSIONS Using unprompted app data appeared feasible for constructing a high-performing group-level lapse classification algorithm but its performance was variable when applied to unseen individuals. Algorithms trained on each individual's dataset, in addition to hybrid algorithms trained on the group plus a proportion of each individual's data, had improved performance but could only be constructed for a minority of participants. IMPLICATIONS This study used routinely collected data from a popular smartphone app to train and test a series of supervised machine learning algorithms to distinguish lapse from non-lapse events. Although a high-performing group-level algorithm was developed, it had variable performance when applied to new, unseen individuals. Individual-level and hybrid algorithms had somewhat greater performance but could not be constructed for all participants because of the lack of variability in the outcome measure. Triangulation of results with those from a prompted study design is recommended prior to intervention development, with real-world lapse prediction likely requiring a balance between unprompted and prompted app data.
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Affiliation(s)
- Olga Perski
- Department of Behavioural Science and Health, University College London, London, UK
- SPECTRUM Consortium, London, UK
| | - Kezhi Li
- Institute of Health Informatics, University College London, London, UK
| | - Nikolas Pontikos
- UCL Institute of Ophthalmology, University College London, London, UK
| | - David Simons
- Centre for Emerging, Endemic and Exotic Diseases, Royal Veterinary College, London, UK
| | - Stephanie P Goldstein
- Weight Control and Diabetes Research Center, The Miriam Hospital, Providence, RI, USA
- Department of Psychiatry and Human Behavior, Alpert Medical School of Brown University, Providence, RI, USA
| | - Felix Naughton
- Behavioural and Implementation Science Research Group, School of Health Sciences, University of East Anglia, Norwich, UK
| | - Jamie Brown
- Department of Behavioural Science and Health, University College London, London, UK
- SPECTRUM Consortium, London, UK
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Fu R, Kundu A, Mitsakakis N, Elton-Marshall T, Wang W, Hill S, Bondy SJ, Hamilton H, Selby P, Schwartz R, Chaiton MO. Machine learning applications in tobacco research: a scoping review. Tob Control 2023; 32:99-109. [PMID: 34452986 DOI: 10.1136/tobaccocontrol-2020-056438] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Accepted: 04/14/2021] [Indexed: 12/23/2022]
Abstract
OBJECTIVE Identify and review the body of tobacco research literature that self-identified as using machine learning (ML) in the analysis. DATA SOURCES MEDLINE, EMABSE, PubMed, CINAHL Plus, APA PsycINFO and IEEE Xplore databases were searched up to September 2020. Studies were restricted to peer-reviewed, English-language journal articles, dissertations and conference papers comprising an empirical analysis where ML was identified to be the method used to examine human experience of tobacco. Studies of genomics and diagnostic imaging were excluded. STUDY SELECTION Two reviewers independently screened the titles and abstracts. The reference list of articles was also searched. In an iterative process, eligible studies were classified into domains based on their objectives and types of data used in the analysis. DATA EXTRACTION Using data charting forms, two reviewers independently extracted data from all studies. A narrative synthesis method was used to describe findings from each domain such as study design, objective, ML classes/algorithms, knowledge users and the presence of a data sharing statement. Trends of publication were visually depicted. DATA SYNTHESIS 74 studies were grouped into four domains: ML-powered technology to assist smoking cessation (n=22); content analysis of tobacco on social media (n=32); smoker status classification from narrative clinical texts (n=6) and tobacco-related outcome prediction using administrative, survey or clinical trial data (n=14). Implications of these studies and future directions for ML researchers in tobacco control were discussed. CONCLUSIONS ML represents a powerful tool that could advance the research and policy decision-making of tobacco control. Further opportunities should be explored.
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Affiliation(s)
- Rui Fu
- Institute of Health Policy Management and Evaluation, University of Toronto, Toronto, Ontario, Canada
| | - Anasua Kundu
- Ontario Tobacco Research Unit, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada
| | - Nicholas Mitsakakis
- Institute of Health Policy Management and Evaluation, University of Toronto, Toronto, Ontario, Canada
- Children's Hospital of Eastern Ontario Research Institute, Ottawa, Ontario, Canada
| | - Tara Elton-Marshall
- Institute for Mental Health Policy Research, Centre for Addiction and Mental Health, Toronto, Ontario, Canada
| | - Wei Wang
- Centre for Addiction and Mental Health, Toronto, Ontario, Canada
| | - Sean Hill
- Centre for Addiction and Mental Health, Toronto, Ontario, Canada
| | - Susan J Bondy
- Centre for Addiction and Mental Health, Toronto, Ontario, Canada
| | - Hayley Hamilton
- Centre for Addiction and Mental Health, Toronto, Ontario, Canada
| | - Peter Selby
- Centre for Addiction and Mental Health, Toronto, Ontario, Canada
| | - Robert Schwartz
- Ontario Tobacco Research Unit, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada
- Institute for Mental Health Policy Research, Centre for Addiction and Mental Health, Toronto, Ontario, Canada
| | - Michael Oliver Chaiton
- Ontario Tobacco Research Unit, Dalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada
- Institute for Mental Health Policy Research, Centre for Addiction and Mental Health, Toronto, Ontario, Canada
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Guessoum S, Belda S, Ferrandiz JM, Modiri S, Raut S, Dhar S, Heinkelmann R, Schuh H. The Short-Term Prediction of Length of Day Using 1D Convolutional Neural Networks (1D CNN). SENSORS (BASEL, SWITZERLAND) 2022; 22:9517. [PMID: 36502228 PMCID: PMC9740590 DOI: 10.3390/s22239517] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 11/04/2022] [Accepted: 11/29/2022] [Indexed: 06/17/2023]
Abstract
Accurate Earth orientation parameter (EOP) predictions are needed for many applications, e.g., for the tracking and navigation of interplanetary spacecraft missions. One of the most difficult parameters to forecast is the length of day (LOD), which represents the variation in the Earth's rotation rate since it is primarily affected by the torques associated with changes in atmospheric circulation. In this study, a new-generation time-series prediction algorithm is developed. The one-dimensional convolutional neural network (1D CNN), which is one of the deep learning methods, is introduced to model and predict the LOD using the IERS EOP 14 C04 and axial Z component of the atmospheric angular momentum (AAM), which was taken from the German Research Centre for Geosciences (GFZ) since it is strongly correlated with the LOD changes. The prediction procedure operates as follows: first, we detrend the LOD and Z-component series using the LS method, then, we obtain the residual series of each one to be used in the 1D CNN prediction algorithm. Finally, we analyze the results before and after introducing the AAM function. The results prove the potential of the proposed method as an optimal algorithm to successfully reconstruct and predict the LOD for up to 7 days.
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Affiliation(s)
- Sonia Guessoum
- UAVAC, Department of Applied Mathematics, Universidad de Alicante, Carretera San Vicente del Raspeig s/n, 03690 San Vicente del Raspeig, Alicante, Spain
| | - Santiago Belda
- UAVAC, Department of Applied Mathematics, Universidad de Alicante, Carretera San Vicente del Raspeig s/n, 03690 San Vicente del Raspeig, Alicante, Spain
| | - Jose M. Ferrandiz
- UAVAC, Department of Applied Mathematics, Universidad de Alicante, Carretera San Vicente del Raspeig s/n, 03690 San Vicente del Raspeig, Alicante, Spain
| | - Sadegh Modiri
- Department Geodesy, Federal Agency for Cartography and Geodesy (BKG), 60322 Frankfurt am Main, Germany
| | - Shrishail Raut
- GFZ German Research Centre for Geosciences, 14473 Potsdam, Germany
- Institute for Geodesy and Geoinformation Science, Technische Universität Berlin, 10623 Berlin, Germany
| | - Sujata Dhar
- GFZ German Research Centre for Geosciences, 14473 Potsdam, Germany
- Indian Institute of Technology Kanpur, Kanpur 208 016, Uttar Pradesh, India
| | | | - Harald Schuh
- GFZ German Research Centre for Geosciences, 14473 Potsdam, Germany
- Institute for Geodesy and Geoinformation Science, Technische Universität Berlin, 10623 Berlin, Germany
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Prediction of Pulmonary Function Parameters Based on a Combination Algorithm. Bioengineering (Basel) 2022; 9:bioengineering9040136. [PMID: 35447696 PMCID: PMC9032560 DOI: 10.3390/bioengineering9040136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 03/18/2022] [Accepted: 03/23/2022] [Indexed: 11/19/2022] Open
Abstract
Objective: Pulmonary function parameters play a pivotal role in the assessment of respiratory diseases. However, the accuracy of the existing methods for the prediction of pulmonary function parameters is low. This study proposes a combination algorithm to improve the accuracy of pulmonary function parameter prediction. Methods: We first established a system to collect volumetric capnography and then processed the data with a combination algorithm to predict pulmonary function parameters. The algorithm consists of three main parts: a medical feature regression structure consisting of support vector machines (SVM) and extreme gradient boosting (XGBoost) algorithms, a sequence feature regression structure consisting of one-dimensional convolutional neural network (1D-CNN), and an error correction structure using improved K-nearest neighbor (KNN) algorithm. Results: The root mean square error (RMSE) of the pulmonary function parameters predicted by the combination algorithm was less than 0.39L and the R2 was found to be greater than 0.85 through a ten-fold cross-validation experiment. Conclusion: Compared with the existing methods for predicting pulmonary function parameters, the present algorithm can achieve a higher accuracy rate. At the same time, this algorithm uses specific processing structures for different features, and the interpretability of the algorithm is ensured while mining the feature depth information.
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Engelhard MM, D'Arcy J, Oliver JA, Kozink R, McClernon FJ. Prediction of Smoking Risk From Repeated Sampling of Environmental Images: Model Validation. J Med Internet Res 2021; 23:e27875. [PMID: 34723819 PMCID: PMC8593805 DOI: 10.2196/27875] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Revised: 04/01/2021] [Accepted: 08/01/2021] [Indexed: 01/27/2023] Open
Abstract
Background Viewing their habitual smoking environments increases smokers’ craving and smoking behaviors in laboratory settings. A deep learning approach can differentiate between habitual smoking versus nonsmoking environments, suggesting that it may be possible to predict environment-associated smoking risk from continuously acquired images of smokers’ daily environments. Objective In this study, we aim to predict environment-associated risk from continuously acquired images of smokers’ daily environments. We also aim to understand how model performance varies by location type, as reported by participants. Methods Smokers from Durham, North Carolina and surrounding areas completed ecological momentary assessments both immediately after smoking and at randomly selected times throughout the day for 2 weeks. At each assessment, participants took a picture of their current environment and completed a questionnaire on smoking, craving, and the environmental setting. A convolutional neural network–based model was trained to predict smoking, craving, whether smoking was permitted in the current environment and whether the participant was outside based on images of participants’ daily environments, the time since their last cigarette, and baseline data on daily smoking habits. Prediction performance, quantified using the area under the receiver operating characteristic curve (AUC) and average precision (AP), was assessed for out-of-sample prediction as well as personalized models trained on images from days 1 to 10. The models were optimized for mobile devices and implemented as a smartphone app. Results A total of 48 participants completed the study, and 8008 images were acquired. The personalized models were highly effective in predicting smoking risk (AUC=0.827; AP=0.882), craving (AUC=0.837; AP=0.798), whether smoking was permitted in the current environment (AUC=0.932; AP=0.981), and whether the participant was outside (AUC=0.977; AP=0.956). The out-of-sample models were also effective in predicting smoking risk (AUC=0.723; AP=0.785), whether smoking was permitted in the current environment (AUC=0.815; AP=0.937), and whether the participant was outside (AUC=0.949; AP=0.922); however, they were not effective in predicting craving (AUC=0.522; AP=0.427). Omitting image features reduced AUC by over 0.1 when predicting all outcomes except craving. Prediction of smoking was more effective for participants whose self-reported location type was more variable (Spearman ρ=0.48; P=.001). Conclusions Images of daily environments can be used to effectively predict smoking risk. Model personalization, achieved by incorporating information about daily smoking habits and training on participant-specific images, further improves prediction performance. Environment-associated smoking risk can be assessed in real time on a mobile device and can be incorporated into device-based smoking cessation interventions.
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Affiliation(s)
- Matthew M Engelhard
- Department of Biostatistics & Bioinformatics, Duke University School of Medicine, Durham, NC, United States
| | - Joshua D'Arcy
- Department of Biostatistics & Bioinformatics, Duke University School of Medicine, Durham, NC, United States
| | - Jason A Oliver
- Department of Biostatistics & Bioinformatics, Duke University School of Medicine, Durham, NC, United States
| | - Rachel Kozink
- Department of Biostatistics & Bioinformatics, Duke University School of Medicine, Durham, NC, United States
| | - F Joseph McClernon
- Department of Biostatistics & Bioinformatics, Duke University School of Medicine, Durham, NC, United States
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Mohd Yusof N, Muda AK, Pratama SF, Carbo-Dorca R. Amphetamine-type stimulants (ATS) drug classification using shallow one-dimensional convolutional neural network. Mol Divers 2021; 26:1609-1619. [PMID: 34338915 DOI: 10.1007/s11030-021-10289-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Accepted: 07/27/2021] [Indexed: 10/20/2022]
Abstract
Amphetamine-type stimulants (ATS) drug analysis and identification are challenging and critical nowadays with the emergence production of new synthetic ATS drugs with sophisticated design compounds. In the present study, we proposed a one-dimensional convolutional neural network (1DCNN) model to perform ATS drug classification as an alternative method. We investigate as well as explore the classification behavior of 1DCNN with the utilization of the existing novel 3D molecular descriptors as ATS drugs representation to become the model input. The proposed 1DCNN model is composed of one convolutional layer to reduce the model complexity. Besides, pooling operation that is a standard part of traditional CNN is not applied in this architecture to have more features in the classification phase. The dropout regularization technique is employed to improve model generalization. Experiments were conducted to find the optimal values for three dominant hyper-parameters of the 1DCNN model which are the filter size, transfer function, and batch size. Our findings found that kernel size 11, exponential linear unit (ELU) transfer function and batch size 32 are optimal for the 1DCNN model. A comparison with several machine learning classifiers has shown that our proposed 1DCNN has achieved comparable performance with the Random Forest classifier and competitive performance with the others.
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Affiliation(s)
- Norfadzlia Mohd Yusof
- Fakulti Teknologi Kejuruteraan Elektrik dan Elektronik, Universiti Teknikal Malaysia Melaka (UTeM), Durian Tunggal, 76100, Melaka, Malaysia
| | - Azah Kamilah Muda
- Fakulti Teknologi Maklumat dan Komunikasi, Universiti Teknikal Malaysia Melaka (UTeM), Durian Tunggal, 76100, Melaka, Malaysia.
| | - Satrya Fajri Pratama
- Fakulti Teknologi Maklumat dan Komunikasi, Universiti Teknikal Malaysia Melaka (UTeM), Durian Tunggal, 76100, Melaka, Malaysia
| | - Ramon Carbo-Dorca
- Institut de Qu´ımica Computacional i Cata`lisi, Universitat de Girona, 17071, Girona, Catalonia, Spain
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Abo-Tabik M, Benn Y, Costen N. Are Machine Learning Methods the Future for Smoking Cessation Apps? SENSORS 2021; 21:s21134254. [PMID: 34206167 PMCID: PMC8271573 DOI: 10.3390/s21134254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Revised: 06/07/2021] [Accepted: 06/16/2021] [Indexed: 11/16/2022]
Abstract
Smoking cessation apps provide efficient, low-cost and accessible support to smokers who are trying to quit smoking. This article focuses on how up-to-date machine learning algorithms, combined with the improvement of mobile phone technology, can enhance our understanding of smoking behaviour and support the development of advanced smoking cessation apps. In particular, we focus on the pros and cons of existing approaches that have been used in the design of smoking cessation apps to date, highlighting the need to improve the performance of these apps by minimizing reliance on self-reporting of environmental conditions (e.g., location), craving status and/or smoking events as a method of data collection. Lastly, we propose that making use of more advanced machine learning methods while enabling the processing of information about the user’s circumstances in real time is likely to result in dramatic improvement in our understanding of smoking behaviour, while also increasing the effectiveness and ease-of-use of smoking cessation apps, by enabling the provision of timely, targeted and personalised intervention.
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Affiliation(s)
- Maryam Abo-Tabik
- Department of Computing and Mathematics, Manchester Metropolitan University, Manchester M1 5GD, UK;
| | - Yael Benn
- Department of Psychology, Manchester Metropolitan University, Manchester M15 6GX, UK
- Correspondence: (Y.B.); (N.C.)
| | - Nicholas Costen
- Department of Computing and Mathematics, Manchester Metropolitan University, Manchester M1 5GD, UK;
- Correspondence: (Y.B.); (N.C.)
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Navaz AN, Serhani MA, El Kassabi HT, Al-Qirim N, Ismail H. Trends, Technologies, and Key Challenges in Smart and Connected Healthcare. IEEE ACCESS : PRACTICAL INNOVATIONS, OPEN SOLUTIONS 2021; 9:74044-74067. [PMID: 34812394 PMCID: PMC8545204 DOI: 10.1109/access.2021.3079217] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Accepted: 05/05/2021] [Indexed: 05/04/2023]
Abstract
Cardio Vascular Diseases (CVD) is the leading cause of death globally and is increasing at an alarming rate, according to the American Heart Association's Heart Attack and Stroke Statistics-2021. This increase has been further exacerbated because of the current coronavirus (COVID-19) pandemic, thereby increasing the pressure on existing healthcare resources. Smart and Connected Health (SCH) is a viable solution for the prevalent healthcare challenges. It can reshape the course of healthcare to be more strategic, preventive, and custom-designed, making it more effective with value-added services. This research endeavors to classify state-of-the-art SCH technologies via a thorough literature review and analysis to comprehensively define SCH features and identify the enabling technology-related challenges in SCH adoption. We also propose an architectural model that captures the technological aspect of the SCH solution, its environment, and its primary involved stakeholders. It serves as a reference model for SCH acceptance and implementation. We reflected the COVID-19 case study illustrating how some countries have tackled the pandemic differently in terms of leveraging the power of different SCH technologies, such as big data, cloud computing, Internet of Things, artificial intelligence, robotics, blockchain, and mobile applications. In combating the pandemic, SCH has been used efficiently at different stages such as disease diagnosis, virus detection, individual monitoring, tracking, controlling, and resource allocation. Furthermore, this review highlights the challenges to SCH acceptance, as well as the potential research directions for better patient-centric healthcare.
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Affiliation(s)
- Alramzana Nujum Navaz
- Department of Information Systems and SecurityCollege of Information TechnologyUnited Arab Emirates UniversityAl AinUnited Arab Emirates
| | - Mohamed Adel Serhani
- Department of Information Systems and SecurityCollege of Information TechnologyUnited Arab Emirates UniversityAl AinUnited Arab Emirates
| | - Hadeel T. El Kassabi
- Department of Computer Science and Software EngineeringCollege of Information TechnologyUAE UniversityAl AinUnited Arab Emirates
| | - Nabeel Al-Qirim
- Department of Information Systems and SecurityCollege of Information TechnologyUnited Arab Emirates UniversityAl AinUnited Arab Emirates
| | - Heba Ismail
- Department of Computer Science and Information Technology (CS-IT)College of EngineeringAbu Dhabi UniversityAl AinUnited Arab Emirates
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15
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Brunese L, Mercaldo F, Reginelli A, Santone A. Radiomics for Gleason Score Detection through Deep Learning. SENSORS (BASEL, SWITZERLAND) 2020; 20:E5411. [PMID: 32967291 PMCID: PMC7570598 DOI: 10.3390/s20185411] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Accepted: 09/18/2020] [Indexed: 02/07/2023]
Abstract
Prostate cancer is classified into different stages, each stage is related to a different Gleason score. The labeling of a diagnosed prostate cancer is a task usually performed by radiologists. In this paper we propose a deep architecture, based on several convolutional layers, aimed to automatically assign the Gleason score to Magnetic Resonance Imaging (MRI) under analysis. We exploit a set of 71 radiomic features belonging to five categories: First Order, Shape, Gray Level Co-occurrence Matrix, Gray Level Run Length Matrix and Gray Level Size Zone Matrix. The radiomic features are gathered directly from segmented MRIs using two free-available dataset for research purpose obtained from different institutions. The results, obtained in terms of accuracy, are promising: they are ranging between 0.96 and 0.98 for Gleason score prediction.
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Affiliation(s)
- Luca Brunese
- Department of Medicine and Health Sciences “Vincenzo Tiberio”, University of Molise, 86100 Campobasso, Italy; (L.B.); (A.S.)
| | - Francesco Mercaldo
- Department of Medicine and Health Sciences “Vincenzo Tiberio”, University of Molise, 86100 Campobasso, Italy; (L.B.); (A.S.)
- Institute for Informatics and Telematics, National Research Council of Italy, 56121 Pisa, Italy
| | - Alfonso Reginelli
- Department of Precision Medicine, University of Campania “Luigi Vanvitelli”, 80100 Napoli, Italy;
| | - Antonella Santone
- Department of Medicine and Health Sciences “Vincenzo Tiberio”, University of Molise, 86100 Campobasso, Italy; (L.B.); (A.S.)
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