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Martens N, Russnak V, Woodhouse J, Grossart HP, Schaum CE. Metabarcoding reveals potentially mixotrophic flagellates and picophytoplankton as key groups of phytoplankton in the Elbe estuary. ENVIRONMENTAL RESEARCH 2024; 252:119126. [PMID: 38734293 DOI: 10.1016/j.envres.2024.119126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 05/07/2024] [Accepted: 05/09/2024] [Indexed: 05/13/2024]
Abstract
In estuaries, phytoplankton are faced with strong environmental forcing (e.g. high turbidity, salinity gradients). Taxa that appear under such conditions may play a critical role in maintaining food webs and biological carbon pumping, but knowledge about estuarine biota remains limited. This is also the case in the Elbe estuary where the lower 70 km of the water body are largely unexplored. In the present study, we investigated the phytoplankton composition in the Elbe estuary via metabarcoding. Our aim was to identify key taxa in the unmonitored reaches of this ecosystem and compare our results from the monitored area with available microscopy data. Phytoplankton communities followed distinct seasonal and spatial patterns. Community composition was similar across methods. Contributions of key classes and genera were correlated to each other (p < 0.05) when obtained from reads and biovolume (R2 = 0.59 and 0.33, respectively). Centric diatoms (e.g. Stephanodiscus) were the dominant group - comprising on average 55 % of the reads and 66-69 % of the biovolume. However, results from metabarcoding imply that microscopy underestimates the prevalence of picophytoplankton and flagellates with a potential for mixotrophy (e.g. cryptophytes). This might be due to their small size and sensitivity to fixation agents. We argue that mixotrophic flagellates are ecologically relevant in the mid to lower estuary, where, e.g., high turbidity render living conditions rather unfavorable, and skills such as phagotrophy provide fundamental advantages. Nevertheless, further findings - e.g. important taxa missing from the metabarcoding dataset - emphasize potential limitations of this method and quantitative biases can result from varying numbers of gene copies in different taxa. Further research should address these methodological issues but also shed light on the causal relationship of taxa with the environmental conditions, also with respect to active mixotrophic behavior.
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Affiliation(s)
- Nele Martens
- Institute of Marine Ecosystem and Fishery Science, Olbersweg 24, 22767, Hamburg, Germany.
| | - Vanessa Russnak
- Helmholtz-Zentrum hereon, Max-Planck-Straße 1, 21502, Geesthacht, Germany.
| | - Jason Woodhouse
- Institute of Cell and Systems Biology of Animals, Martin-Luther-King-Platz 3, 20146, Hamburg, Germany.
| | - Hans-Peter Grossart
- Leibniz Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhütte 2, 16775, Stechlin, Germany; Institute of Biochemistry and Biology, Maulbeerallee 2, 14469, Potsdam, Germany.
| | - C-Elisa Schaum
- Institute of Marine Ecosystem and Fishery Science, Olbersweg 24, 22767, Hamburg, Germany; Center for Earth System Research and Sustainability, Bundesstraße 53-55, 20146, Hamburg, Germany.
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Li Z, Xu K, Meng M, Xu Y, Ji D, Wang W, Xie C. Environmental heterogeneity caused by large-scale cultivation of Pyropia haitanensis shapes multi-group biodiversity distribution in coastal areas. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 931:172692. [PMID: 38663622 DOI: 10.1016/j.scitotenv.2024.172692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 04/19/2024] [Accepted: 04/20/2024] [Indexed: 05/09/2024]
Abstract
The response of marine biodiversity to mariculture has long been a research focus in marine ecology. However, the effects of seaweed cultivation on biological community assembly are poorly understood, especially in diverse communities with distinct ecological characteristics. In this study, we used environmental DNA metabarcoding to investigate the spatial distribution patterns of bacterial, protistan, and metazoan diversity, aiming to reveal the mechanisms of community assembly in the Pyropia haitanensis cultivation zone along the Fujian coast, China. We found that, compared with the biological communities in control zones, those in P. haitanensis cultivation zones exhibited stronger geographic distance-decay patterns and displayed more complex and stable network structures. Deterministic processes (environmental selection) played a more important role in the assembly of bacterial, protistan, and metazoan communities in P. haitanensis cultivation zones, especially metazoan communities. Variance partitioning analysis showed that environmental variables made greater contributions to the diversity of the three types of communities within the P. haitanensis cultivation zones than in the control zones. Partial least squares path modeling analysis identified nitrate‑nitrogen (NO3-N), pH, particulate organic carbon (POC), and dissolved organic carbon (DOC) as the key environmental variables affecting biodiversity. Overall, the environmental heterogeneity caused by the large-scale cultivation of P. haitanensis could be the crucial factor influencing the composition and structure of various biological communities. Our results highlight the importance of the responses of multi-group organisms to the cultivation of seaweed, and provide insights into the coexistence patterns of biodiversity at the spatial scale.
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Affiliation(s)
- Zongtang Li
- Fisheries College, Jimei University, Xiamen, China; Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Xiamen, China; Fujian Engineering Research Center of Aquatic Breeding and Healthy Aquaculture, Xiamen, China; State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei University, Ningde 352100, China
| | - Kai Xu
- Fisheries College, Jimei University, Xiamen, China; Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Xiamen, China; Fujian Engineering Research Center of Aquatic Breeding and Healthy Aquaculture, Xiamen, China; State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei University, Ningde 352100, China
| | - Muhan Meng
- Fisheries College, Jimei University, Xiamen, China; Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Xiamen, China; Fujian Engineering Research Center of Aquatic Breeding and Healthy Aquaculture, Xiamen, China
| | - Yan Xu
- Fisheries College, Jimei University, Xiamen, China; Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Xiamen, China; Fujian Engineering Research Center of Aquatic Breeding and Healthy Aquaculture, Xiamen, China; State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei University, Ningde 352100, China
| | - Dehua Ji
- Fisheries College, Jimei University, Xiamen, China; Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Xiamen, China; Fujian Engineering Research Center of Aquatic Breeding and Healthy Aquaculture, Xiamen, China; State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei University, Ningde 352100, China
| | - Wenlei Wang
- Fisheries College, Jimei University, Xiamen, China; Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Xiamen, China; Fujian Engineering Research Center of Aquatic Breeding and Healthy Aquaculture, Xiamen, China; State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei University, Ningde 352100, China.
| | - Chaotian Xie
- Fisheries College, Jimei University, Xiamen, China; Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Xiamen, China; Fujian Engineering Research Center of Aquatic Breeding and Healthy Aquaculture, Xiamen, China; State Key Laboratory of Mariculture Breeding, Fisheries College of Jimei University, Ningde 352100, China.
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Fagiano V, Compa M, Alomar C, Deudero S. Global Meta-Analysis and Review of Microplastic in Marine Copepods. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 351:124092. [PMID: 38701964 DOI: 10.1016/j.envpol.2024.124092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 04/12/2024] [Accepted: 04/30/2024] [Indexed: 05/06/2024]
Abstract
Plastic pollution has spread through all parts of the marine environment, representing a significant threat to species and ecosystems. This study investigates the role of copepods as widespread microplastic reservoirs in the marine environment, by performing, a systematic review, meta-analysis, and semiquantitative analysis of scientific articles focusing on the interaction between copepods and microplastics under field conditions. Our findings indicate that despite uniformly low ingestion of microplastics across different marine layers and geographical areas, with a slight uptake in neustonic copepods, copepods might constitute one of the largest marine microplastic reservoirs. This phenomenon is attributed more to their vast abundance than to average microplastic ingestion values. In this article, a framework for data analysis and reporting is proposed to facilitate future large-scale evaluations and modelling of their extent and impact on plastic and carbon cycles. These insights place copepods at the forefront of the marine plastic cycle, possibly affecting plastic distribution, and bioavailability, thereby opening new pathways for understanding the complex dynamics of microplastics in marine ecosystems.
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Affiliation(s)
- V Fagiano
- Oceanographic Centre of the Balearic Islands (COB-IEO, CSIC), Moll de Ponent s/n, 07015, Palma Balearic Islands, Spain.
| | - M Compa
- Oceanographic Centre of the Balearic Islands (COB-IEO, CSIC), Moll de Ponent s/n, 07015, Palma Balearic Islands, Spain
| | - C Alomar
- Oceanographic Centre of the Balearic Islands (COB-IEO, CSIC), Moll de Ponent s/n, 07015, Palma Balearic Islands, Spain
| | - S Deudero
- Oceanographic Centre of the Balearic Islands (COB-IEO, CSIC), Moll de Ponent s/n, 07015, Palma Balearic Islands, Spain
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Ayub H, Ijaz U, Raza A, Zuberi A, Liaqat N, Ujan JA, Habib SS, Batool AI, Ullah M, Khan K, Khayyam K, Mohany M. Ecological patterns of phytoplankton across lake cross-section: insights into co-evolution of physicochemical conditions in Chashma Lake on Indus River. ENVIRONMENTAL MONITORING AND ASSESSMENT 2024; 196:613. [PMID: 38871952 DOI: 10.1007/s10661-024-12776-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 06/05/2024] [Indexed: 06/15/2024]
Abstract
Physicochemical properties of water influence planktonic diversity and distribution, which is essential in obtaining basic knowledge of aquatic biodiversity. Thus current study aims to investigate the spatiotemporal diversity, abundance ratio, and distribution of phytoplankton species and their association with water quality parameters of Chashma Lake, Pakistan. During the study period from 2018 to 2019, we measured 13 physicochemical parameters across three selected sampling sites (S1, S2, and S3) in Chashma Lake, revealing both spatial and temporal variability. Dissolved oxygen (DO) was higher in S3, while S1 exhibited higher alkalinity levels, carbon dioxide, phosphorus, and chloride levels. The study identified 77 phytoplankton species grouped into five taxonomic categories, with Cyanobacteria dominating (39.90%), followed by Chlorophyta (33.4%) and Bacillariophyta (24.88%). Euglenozoa and Ochrophyta were less abundant (1.3% and 0.41%, respectively). Spatial variations in phytoplankton distribution were noted, with Chlorophyta being more abundant at S2, Bacillariophyta and Cyanobacteria at S1, and Euglenozoa dominating at S3. Canonical Correspondence Analysis (CCA) revealed the influence of various physicochemical parameters on phytoplankton distribution. This comprehensive study provides valuable insights for the ecological assessment and monitoring of water bodies. It is recommended that continuous monitoring is required to capture long-term trends, further explore the specific environmental drivers impacting phytoplankton dynamics, and consider management strategies for maintaining water quality and biodiversity in Chashma Lake.
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Affiliation(s)
- Huma Ayub
- Department of Zoology, Mirpur University of Science and Technology (MUST), Mirpur, 10250, AJK, Pakistan
| | - Umar Ijaz
- College of Hydraulic and Environment Engineering, China Three Gorges University, Yichang, 443002, Hubei, China
| | - Asif Raza
- Government Degree College Nasirabad, District- Qambar-Shahdadkot, Qambar, 77020, Sindh, Pakistan
| | - Amina Zuberi
- Fisheries & Aquaculture Program, Department of Zoology, Faculty of Biological Sciences, Quaid-I-Azam University Islamabad, Islamabad, 45320, Pakistan
| | - Nusrat Liaqat
- College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, 201306, China
| | - Javed Ahmed Ujan
- Department of Zoology, Shah Abdul Latif University, Khairpur, 66020, Sindh, Pakistan
- Department of Animal Sciences, University of Florida, Gainesville, FL, 32608, USA
| | - Syed Sikandar Habib
- Department of Zoology, University of Sargodha, Sargodha, 40100, Punjab, Pakistan.
| | - Aima Iram Batool
- Department of Zoology, University of Sargodha, Sargodha, 40100, Punjab, Pakistan
| | - Mujeeb Ullah
- Department of Zoology, Islamia College University, Peshawar, 25120, Khyber Pakhtunkhwa, Pakistan
| | - Khalid Khan
- Department of Zoology, Islamia College University, Peshawar, 25120, Khyber Pakhtunkhwa, Pakistan
| | - Khayyam Khayyam
- Department of Zoology, Islamia College University, Peshawar, 25120, Khyber Pakhtunkhwa, Pakistan
| | - Mohamed Mohany
- Department of Pharmacology and Toxicology, College of Pharmacy, King Saud University, P.O. Box 55760, 11451, Riyadh, Saudi Arabia
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5
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Miller IR, Bui H, Wood JB, Fields MW, Gerlach R. Understanding phycosomal dynamics to improve industrial microalgae cultivation. Trends Biotechnol 2024; 42:680-698. [PMID: 38184438 DOI: 10.1016/j.tibtech.2023.12.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 12/06/2023] [Accepted: 12/06/2023] [Indexed: 01/08/2024]
Abstract
Algal-bacterial interactions are ubiquitous in both natural and industrial systems, and the characterization of these interactions has been reinvigorated by potential applications in biosystem productivity. Different growth conditions can be used for operational functions, such as the use of low-quality water or high pH/alkalinity, and the altered operating conditions likely constrain microbial community structure and function in unique ways. However, research is necessary to better understand whether consortia can be designed to improve the productivity, processing, and sustainability of industrial-scale cultivations through different controls that can constrain microbial interactions for maximal light-driven outputs. The review highlights current knowledge and gaps for relevant operating conditions, as well as suggestions for near-term and longer-term improvements for large-scale cultivation and polyculture engineering.
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Affiliation(s)
- Isaac R Miller
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA; Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA
| | - Huyen Bui
- Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA
| | - Jessica B Wood
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA; Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA
| | - Matthew W Fields
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA; Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA; Department of Civil Engineering, Montana State University, Bozeman, MT, USA; Energy Research Institute, Montana State University, Bozeman, MT, USA.
| | - Robin Gerlach
- Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA; Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA; Energy Research Institute, Montana State University, Bozeman, MT, USA; Department of Biological and Chemical Engineering, Bozeman, MT, USA
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6
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Thibodeau PS, Puggioni G, Strock J, Borkman DG, Rynearson TA. Long-term declines in chlorophyll a and variable phenology revealed by a 60-year estuarine plankton time series. Proc Natl Acad Sci U S A 2024; 121:e2311086121. [PMID: 38739806 PMCID: PMC11127012 DOI: 10.1073/pnas.2311086121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Accepted: 03/16/2024] [Indexed: 05/16/2024] Open
Abstract
Long-term ecological time series provide a unique perspective on the emergent properties of ecosystems. In aquatic systems, phytoplankton form the base of the food web and their biomass, measured as the concentration of the photosynthetic pigment chlorophyll a (chl a), is an indicator of ecosystem quality. We analyzed temporal trends in chl a from the Long-Term Plankton Time Series in Narragansett Bay, Rhode Island, USA, a temperate estuary experiencing long-term warming and changing anthropogenic nutrient inputs. Dynamic linear models were used to impute and model environmental variables (1959 to 2019) and chl a concentrations (1968 to 2019). A long-term chl a decrease was observed with an average decline in the cumulative annual chl a concentration of 49% and a marked decline of 57% in winter-spring bloom magnitude. The long-term decline in chl a concentration was directly and indirectly associated with multiple environmental factors that are impacted by climate change (e.g., warming temperatures, water column stratification, reduced nutrient concentrations) indicating the importance of accounting for regional climate change effects in ecosystem-based management. Analysis of seasonal phenology revealed that the winter-spring bloom occurred earlier, at a rate of 4.9 ± 2.8 d decade-1. Finally, the high degree of temporal variation in phytoplankton biomass observed in Narragansett Bay appears common among estuaries, coasts, and open oceans. The commonality among these marine ecosystems highlights the need to maintain a robust set of phytoplankton time series in the coming decades to improve signal-to-noise ratios and identify trends in these highly variable environments.
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Affiliation(s)
| | - Gavino Puggioni
- Department of Computer Science and Statistics, University of Rhode Island, Kingston, RI02881
| | - Jacob Strock
- Graduate School of Oceanography, University of Rhode Island, Narragansett, RI02882
| | - David G. Borkman
- Rhode Island Department of Environmental Management, Office of Water Resources–Shellfish, Providence, RI02908
| | - Tatiana A. Rynearson
- Graduate School of Oceanography, University of Rhode Island, Narragansett, RI02882
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Munyai LF, Mugwedi L, Wasserman RJ, Dondofema F, Riddell E, Keates C, Dalu T. Water and sediment chemistry drivers of chlorophyll-a dynamics within a Ramsar declared floodplain pan wetland system. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:28549-28563. [PMID: 38561533 DOI: 10.1007/s11356-024-33052-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Accepted: 03/19/2024] [Indexed: 04/04/2024]
Abstract
Floodplain pans are hydrologically dynamic in nature and characterised by variables such as chlorophyll-a (chl-a), water, and sediment chemistry over their hydroperiods. The present study investigated the spatio-temporal variations in water and sediment physico-chemical, and chlorophyll-a concentration characteristics of six floodplain pans found in the Ramsar declared Makuleke wetlands, Kruger National Park, South Africa. The water and sediment physico-chemical variable values were generally elevated during the high-water period, whereas chlorophyll-a concentrations varied across pans and hydroperiod. Benthic chl-a concentration significantly varied across pans with concentrations ranging from 161 to 1036.2 mg m2. The two-way ANOVA showed significant differences in benthic chl-a concentration among hydroperiods, and no significant differences were observed in pelagic chl-a across pans and hydroperiods. Generally, pelagic and benthic chl-a concentration increased as water and sediment chemistry variables increased. Furthermore, three sediment variables, i.e. pH, calcium, and magnesium, and water conductivity were found to be significant in structuring benthic chlorophyll-a dynamics in pans. However, none of the sediment and water variables had a significant effect on pelagic chl-a. Hydroperiod had a significant effect on influencing chl-a concentration, with high and low water level periods being characterised by low and high chl-a concentration, respectively. The n-MDS results showed strong overlaps in chl-a biomass among the Makuleke floodplain pans across hydroperiods. The increasing chl-a concentration in these floodplain pans due to potential bioturbation effects as a result of large mammals could potentially lead to eutrophication, which in turn could affect the system's primary productivity and aquatic biota. Therefore, it is important to establish a continuous monitoring programme on these pans to inform sound management decisions.
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Affiliation(s)
- Linton F Munyai
- School of Biology and Environmental Sciences, University of Mpumalanga, Nelspruit, 1200, South Africa.
- Aquatic Systems Research Group, Department of Geography and Environmental Science, University of Venda, Thohoyandou, 0950, South Africa.
| | - Lutendo Mugwedi
- Aquatic Systems Research Group, Department of Geography and Environmental Science, University of Venda, Thohoyandou, 0950, South Africa
| | - Ryan J Wasserman
- Department of Zoology and Entomology, Rhodes University, Makhanda, 6140, South Africa
- South African Institute for Aquatic Biodiversity, Makhanda, 6140, South Africa
| | - Farai Dondofema
- Aquatic Systems Research Group, Department of Geography and Environmental Science, University of Venda, Thohoyandou, 0950, South Africa
| | - Eddie Riddell
- Regional Integration Unit, Conservation Management, SANParks, Kruger National Park, Skukuza, 1350, South Africa
- Centre for Water Resources Research, University of KwaZulu-Natal, Pietermaritzburg, 3209, South Africa
| | - Chad Keates
- South African Institute for Aquatic Biodiversity, Makhanda, 6140, South Africa
| | - Tatenda Dalu
- School of Biology and Environmental Sciences, University of Mpumalanga, Nelspruit, 1200, South Africa
- South African Institute for Aquatic Biodiversity, Makhanda, 6140, South Africa
- Stellenbosch Institute for Advanced Study, Wallenberg Research Centre at Stellenbosch University, Stellenbosch, 7600, South Africa
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Seo HJ, Kim YH, Yang HJ, Park MG, Lee MJ, Kim DJ, Jang SH. Spring protistan communities in response to warming in the northeastern East China Sea. MARINE ENVIRONMENTAL RESEARCH 2024; 196:106376. [PMID: 38316569 DOI: 10.1016/j.marenvres.2024.106376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 01/05/2024] [Accepted: 01/19/2024] [Indexed: 02/07/2024]
Abstract
The northeastern East China Sea is a highly dynamic marine ecosystem influenced by seasonally varying water mass properties. However, despite being among the world's fastest-warming ocean, there has been limited investigation into the impacts of warming on protistan communities. We collected seawater from two stations (E42 and E46) with different natural protist communities and environmental attributes to investigate the acclimation of the two communities to artificially elevated temperatures (ambient T, +2, and +4 °C). Nutrient and Chl-a conditions reflected oceanographic differences, providing insights into protistan community dynamics. Notably, small-sized autotrophic protists prevailed in the phosphate-deficient E42 community, with mid-incubation heterotrophic conversions. Higher temperatures exacerbated the effects of the P deficiency on the E42 community. While the proportions of Bacillariophyta increased only in the nutrient-balanced E46 communities, those of mixotrophic dinoflagellates increased with elevated temperature, regardless of P deficiency, suggesting that mixotrophy likely aids adaptation in changing marine environments. In summary, the findings of this microcosm study illuminate the potential modulation of spring protistan communities in the northeastern East China Sea under anticipated future warming.
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Affiliation(s)
- Hye Jin Seo
- Department of Oceanography, Chonnam National University, Gwangju 61186, South Korea
| | - Yun Hee Kim
- Department of Oceanography, Chonnam National University, Gwangju 61186, South Korea
| | - Hyun Jun Yang
- Department of Oceanography, Chonnam National University, Gwangju 61186, South Korea
| | - Myung Gil Park
- Department of Oceanography, Chonnam National University, Gwangju 61186, South Korea
| | - Moo Joon Lee
- Department of Marine Biotechnology, Anyang University, Incheon 23038, South Korea
| | - Dae Jin Kim
- Training Ship Administrative Center, Chonnam National University, Yeosu 59626, South Korea
| | - Se Hyeon Jang
- Department of Oceanography, Chonnam National University, Gwangju 61186, South Korea.
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Guo S, Sun X, Zhang J, Yao Q, Wei C, Wang F. Unveiling the evolution of phytoplankton communities: Decades-long insights into the southern Yellow Sea, China (1959-2023). MARINE POLLUTION BULLETIN 2024; 201:116179. [PMID: 38394795 DOI: 10.1016/j.marpolbul.2024.116179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 02/11/2024] [Accepted: 02/16/2024] [Indexed: 02/25/2024]
Abstract
We obtained historical and observational data on phytoplankton communities from 1959 to 2023 to explore the responses of the phytoplankton community structure to long-term environmental changes in the southern Yellow Sea (SYS), China. The results revealed a decrease in the proportions of diatom cell abundance within the phytoplankton community by 8 %, accompanied by a corresponding increase in that of dinoflagellates. Dominant phytoplankton species were mainly chain-forming diatoms before 2000, and large dinoflagellate species from the genera Tripos and Noctiluca increased their dominance after 2000. Warm-water phytoplankton species have increased in dominance over the study period. Correlation analysis revealed that the ocean warming and alterations in nutrient structure (N/P and Si/N ratios) were mostly responsible for the long-term evolution trend, and these changes may result in an increase in dinoflagellate harmful algal blooms, reduced efficiency of the biological carbon pump, and heightened hypoxia in the future, which should draw our attention.
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Affiliation(s)
- Shujin Guo
- Jiaozhou Bay National Marine Ecosystem Research Station, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, PR China; Laboratory for Marine Ecology and Environmental Science, Qingdao Marine Science and Technology Center, Qingdao 266237, PR China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, PR China
| | - Xiaoxia Sun
- Jiaozhou Bay National Marine Ecosystem Research Station, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, PR China; Laboratory for Marine Ecology and Environmental Science, Qingdao Marine Science and Technology Center, Qingdao 266237, PR China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China.
| | - Jian Zhang
- National Marine Data and Information Service, Tianjin 300171, PR China
| | - Qingzhen Yao
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, and Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, Ocean University of China, Qingdao 266100, PR China
| | - Chuanjie Wei
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, PR China; Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, PR China
| | - Feng Wang
- Jiaozhou Bay National Marine Ecosystem Research Station, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
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Cao L, Bi D, Fan W, Xu J, Beardall J, Gao K, Wu Y. Warming exacerbates the impacts of ultraviolet radiation in temperate diatoms but alleviates the effect on polar species. Photochem Photobiol 2024; 100:491-498. [PMID: 37528525 DOI: 10.1111/php.13844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Revised: 07/20/2023] [Accepted: 07/23/2023] [Indexed: 08/03/2023]
Abstract
Under global change scenarios, the sea surface temperature is increasing steadily along with other changes to oceanic environments. Consequently, marine diatoms are influenced by multiple ocean global change drivers. We hypothesized that temperature rise mediates the responses of polar and temperate diatoms to UV radiation (UVR) to different extents, and exposed the temperate centric diatoms, Thalassiosira weissflogii and Skeletonema costatum, and a polar pennate diatom Entomoneis sp., to warming (+5°C) for 10 days, then performed short-term incubations under different radiation treatments with or without UVR. The effective quantum yields of the three diatoms were stable during exposure to PAR, but decreased when exposed to PAR + UVR, leading to significant UV-induced inhibition, which was 3% and 9%, respectively, for T. weissflogii and S. costatum under ambient temperature but increased to 12% and 17%, respectively, in the cells acclimated to the warming treatment. In contrast, UVR induced much higher inhibition, by about 45%, in the polar diatom Entomoneis sp. at ambient temperature, and the warming treatment alleviated the UV-induced inhibition, which dropped to 36%. The growth rates were significantly inhibited by UVR in S. costatum under the warming treatment and in Entomoneis sp. under ambient temperature, while there was no significant effect for T. weissflogii. Our results indicate that the polar diatom was more sensitive to UVR though warming could alleviate its impact, whereas the temperate diatoms were less sensitive to UVR but warming exacerbated its impacts, implying that diatoms living in different regions may exhibit differential responses to global changes.
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Affiliation(s)
- Lixin Cao
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Dongquan Bi
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Wei Fan
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
| | - Juntian Xu
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
- Key Laboratory of Coastal Salt Marsh Ecosystems and Resources Ministry of Natural Resources, Jiangsu Ocean University, Lianyungang, China
| | - John Beardall
- State Key Laboratory of Marine Environmental Science, College of Ocean & Earth Sciences, Xiamen University, Xiamen, China
- School of Biological Sciences, Monash University, Clayton, Victoria, Australia
| | - Kunshan Gao
- State Key Laboratory of Marine Environmental Science, College of Ocean & Earth Sciences, Xiamen University, Xiamen, China
| | - Yaping Wu
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang, China
- Key Laboratory of Coastal Salt Marsh Ecosystems and Resources Ministry of Natural Resources, Jiangsu Ocean University, Lianyungang, China
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11
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Baldry K, Johnson R, Strutton PG, Boyd PW. A biological ocean data reformatting effort. Sci Data 2024; 11:215. [PMID: 38365981 PMCID: PMC10873340 DOI: 10.1038/s41597-024-03038-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Accepted: 02/01/2024] [Indexed: 02/18/2024] Open
Abstract
Biological ocean data collected from ships find reuse in aggregations of historical data. These data are heavily relied upon to document long term change, validate satellite algorithms for ocean biology and are useful in assessing the performance of autonomous platforms and biogeochemical models. Existing aggregate products have largely been restricted to the surface ocean, omit physical data or have limited biological data. We present the first version of a BIOlogical ocean data reforMATting Effort (BIO-MATE) to begin to fill a gap in subsurface bio-physical data aggregates in a reproducible way. BIO-MATE uses open-source R software that reformats openly sourced published datasets from oceanographic voyages. These reformatted biological and physical data from underway sensors, profiling sensors, pigments analysis and particulate organic carbon analysis are stored in an interoperable BIO-MATE data product for easy access and use. Specific QA/QC protocols can now be easily applied to the BIO-MATE data product to support a variety of surface and subsurface applications.
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Affiliation(s)
- Kimberlee Baldry
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Australia.
| | - Robert Johnson
- Bureau National Operations Centre, Bureau of Meteorology, Hobart, Australia
| | - Peter G Strutton
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Australia
- Australian Centre for Excellence in Antarctic Science, University of Tasmania, Hobart, Australia
- Australian Research Council Centre of Excellence for Climate Extremes, University of New South Wales, Sydney, Australia
| | - Philip W Boyd
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Australia
- Australian Centre for Excellence in Antarctic Science, University of Tasmania, Hobart, Australia
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12
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Fagiano V, Alomar C, Ventero A, de Puelles MLF, Iglesias M, Deudero S. First assessment of anthropogenic particle ingestion in Pontellid copepods: Pontella mediterranea as a potential microplastic reservoir in the Neuston. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168480. [PMID: 37951251 DOI: 10.1016/j.scitotenv.2023.168480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 11/07/2023] [Accepted: 11/08/2023] [Indexed: 11/13/2023]
Abstract
Hyponeustonic species, living at the interface between the atmosphere and the oceans, comprise one of the most understudied and vast critical marine biotope, constantly exposed to high concentrations of anthropogenic contaminants and microplastic (MPs). Copepods of the Pontellidae family represent the primary components of this biotic assemblage worldwide, and their interaction with MPs is still unknown. We studied this interaction for the first time in Pontella mediterranea, assessing the ingestion of anthropogenic particles (APs) in 2793 individuals collected by manta trawl in the Northern Alboran Sea. We observed P. mediterranea abundances ranging from 41.67 to 1174.83 ind/m3, with a mean ingestion of 0.11 APs/ind, predominantly composed of MPs. These results confirm the low ingestion values observed for other copepod taxa. However, given its abundance, this species could retain an average of 45.15 and a maximum of 220 APs per m3 of seawater (APs/m3), mostly composed of cellulose acetate and cotton fibers. The abundances of APs were evaluated in surface (0-12 cm) and sub-surface waters (5 m depth) by combining manta trawl and Continuous Underway Fish Egg Sampler sampling. The AP abundances found (surface waters: 0.67 ± 1.04 APs/m3; subsurface waters: 3.85 ± 2.67 APs/m3) were consistent with those previously observed in the Mediterranean basin, confirming that the ingestion values observed in P. mediterranea are not due to a local accumulation of environmental MPs. Results highlight how this neustonic copepod could represent one of the largest reservoirs of APs within the upper layers of the oceans, representing an entry point for these particles within food webs. Considering the worldwide distribution and abundance of this family of copepods, the results are of environmental concern.
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Affiliation(s)
- V Fagiano
- Oceanographic Center of the Balearic Islands (COB-IEO, CSIC), Moll de Ponent s/n, 07015 Palma, Balearic Islands, Spain.
| | - C Alomar
- Oceanographic Center of the Balearic Islands (COB-IEO, CSIC), Moll de Ponent s/n, 07015 Palma, Balearic Islands, Spain
| | - A Ventero
- Oceanographic Center of the Balearic Islands (COB-IEO, CSIC), Moll de Ponent s/n, 07015 Palma, Balearic Islands, Spain
| | - M L Fernández de Puelles
- Oceanographic Center of the Balearic Islands (COB-IEO, CSIC), Moll de Ponent s/n, 07015 Palma, Balearic Islands, Spain
| | - M Iglesias
- Oceanographic Center of the Balearic Islands (COB-IEO, CSIC), Moll de Ponent s/n, 07015 Palma, Balearic Islands, Spain
| | - S Deudero
- Oceanographic Center of the Balearic Islands (COB-IEO, CSIC), Moll de Ponent s/n, 07015 Palma, Balearic Islands, Spain
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13
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Buchwald SZ, Herzschuh U, Nürnberg D, Harms L, Stoof-Leichsenring KR. Plankton community changes during the last 124 000 years in the subarctic Bering Sea derived from sedimentary ancient DNA. THE ISME JOURNAL 2024; 18:wrad006. [PMID: 38365253 PMCID: PMC10811732 DOI: 10.1093/ismejo/wrad006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 11/01/2023] [Accepted: 11/09/2023] [Indexed: 02/18/2024]
Abstract
Current global warming results in rising sea-water temperatures, and the loss of sea ice in Arctic and subarctic oceans impacts the community composition of primary producers with cascading effects on the food web and potentially on carbon export rates. This study analyzes metagenomic shotgun and diatom rbcL amplicon sequencing data from sedimentary ancient DNA of the subarctic western Bering Sea that records phyto- and zooplankton community changes over the last glacial-interglacial cycles, including the last interglacial period (Eemian). Our data show that interglacial and glacial plankton communities differ, with distinct Eemian and Holocene plankton communities. The generally warm Holocene period is dominated by picosized cyanobacteria and bacteria-feeding heterotrophic protists, while the Eemian period is dominated by eukaryotic picosized chlorophytes and Triparmaceae. By contrast, the glacial period is characterized by microsized phototrophic protists, including sea ice-associated diatoms in the family Bacillariaceae and co-occurring diatom-feeding crustaceous zooplankton. Our deep-time record of plankton community changes reveals a long-term decrease in phytoplankton cell size coeval with increasing temperatures, resembling community changes in the currently warming Bering Sea. The phytoplankton community in the warmer-than-present Eemian period is distinct from modern communities and limits the use of the Eemian as an analog for future climate scenarios. However, under enhanced future warming, the expected shift toward the dominance of small-sized phytoplankton and heterotrophic protists might result in an increased productivity, whereas the community's potential of carbon export will be decreased, thereby weakening the subarctic Bering Sea's function as an effective carbon sink.
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Affiliation(s)
- Stella Z Buchwald
- Polar Terrestrial Environmental Systems, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Potsdam D-14473, Germany
- Department of Earth System Sciences, Universität Hamburg, Hamburg D-20146, Germany
| | - Ulrike Herzschuh
- Polar Terrestrial Environmental Systems, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Potsdam D-14473, Germany
- Institute of Biochemistry and Biology, University of Potsdam, Potsdam D-14476, Germany
- Institute of Environmental Sciences and Geography, University of Potsdam, Potsdam D-14476, Germany
| | - Dirk Nürnberg
- Ocean Circulation and Climate Dynamics, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel D-24148, Germany
| | - Lars Harms
- Data Science Support, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven D-27568, Germany
| | - Kathleen R Stoof-Leichsenring
- Polar Terrestrial Environmental Systems, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Potsdam D-14473, Germany
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14
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Chen F, Zhang Z, Li Y, Jiang H, Zhou Y, Liu H, Pan K, Ma J. Impact of facemask debris on marine diatoms: Physiology, surface properties, sinking rate, and copepod ingestion. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 905:167222. [PMID: 37734605 DOI: 10.1016/j.scitotenv.2023.167222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 09/03/2023] [Accepted: 09/18/2023] [Indexed: 09/23/2023]
Abstract
Discarded surgical masks have become a new source of plastic waste in seawater capable of releasing numerous micro and nano plastic fragments. However, little information is available about how this waste impacts the ecological state of marine phytoplankton. Here, we exposed two model marine diatoms (Phaeodactylum tricornutum and Thalassiosira weissflogii) to mask-released debris (MD) that is characterized by various differently-charged functional groups. Although MD could only bind loosely to diatoms, it still inhibited their growth and significantly altered cell surface physicochemical properties. At the nanoscale, MD-exposed cell walls showed enhanced roughness and modulus, besides declined electrical potential, adhesion, and proportion of oxygen-containing compounds. As a result, diatom ingestion by copepods was reduced, and the sinking rate of the carbon pool consisting of MD plus diatoms decreased as well. Our study indicated that MD effects on diatoms have the potential to slow down carbon export from surface seawater to the deep sea. Since oxidation and generation of functional groups are common during the aging process of microplastics (MPs) in nature, the interactions between the diatom cell surface and MD have important environmental significance.
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Affiliation(s)
- Fengyuan Chen
- SZU-HKUST Joint PhD Program in Marine Environmental Science, Shenzhen University, Shenzhen, China; Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong Special Administrative Region
| | - Zhen Zhang
- SZU-HKUST Joint PhD Program in Marine Environmental Science, Shenzhen University, Shenzhen, China; Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong Special Administrative Region
| | - Yanping Li
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen 518060, Guangdong Province, China
| | - Hao Jiang
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, Hubei Province, China
| | - Yanfei Zhou
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, Hubei Province, China
| | - Hongbin Liu
- Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong Special Administrative Region
| | - Ke Pan
- SZU-HKUST Joint PhD Program in Marine Environmental Science, Shenzhen University, Shenzhen, China; Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen 518060, Guangdong Province, China.
| | - Jie Ma
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen 518060, Guangdong Province, China.
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15
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A K P, M M, Rajamanickam S, Sivarethinamohan S, Gaddam MKR, Velusamy P, R G, Ravindiran G, Gurugubelli TR, Muniasamy SK. Impact of climate change and anthropogenic activities on aquatic ecosystem - A review. ENVIRONMENTAL RESEARCH 2023; 238:117233. [PMID: 37793591 DOI: 10.1016/j.envres.2023.117233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Revised: 09/12/2023] [Accepted: 09/26/2023] [Indexed: 10/06/2023]
Abstract
All living things depend on their natural environment, either directly or indirectly, for their high quality of life, growth, nutrition, and development. Due to the fast emissions of greenhouse gases (GHGs), the Earth's climate system is being negatively impacted by global warming. Stresses caused by climate change, such as rising and hotter seas, increased droughts and floods, and acrid waters, threaten the world's most populated areas and aquatic ecosystems. As a result, the aquatic ecosystems of the globe are quickly reaching hazardous conditions. Marine ecosystems are essential parts of the world's environment and provide several benefits to the human population, such as water for drinking and irrigation, leisure activities, and habitat for commercially significant fisheries. Although local human activities have influenced coastal zones for millennia, it is still unclear how these impacts and stresses from climate change may combine to endanger coastal ecosystems. Recent studies have shown that rising levels of greenhouse gases are causing ocean systems to experience conditions not seen in several million years, which may cause profound and irreversible ecological shifts. Ocean productivity has declined, food web dynamics have changed, habitat-forming species are less common, species ranges have changed, and disease prevalence has increased due to human climate change. We provide an outline of the interaction between global warming and the influence of humans along the coastline. This review aims to demonstrate the significance of long-term monitoring, the creation of ecological indicators, and the applications of understanding how aquatic biodiversity and ecosystem functioning respond to global warming. This review discusses the effects of current climate change on marine biological processes both now and in the future, describes present climate change concerning historical change, and considers the potential roles aquatic systems could play in mitigating the effects of global climate change.
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Affiliation(s)
- Priya A K
- Department of Chemical Engineering, KPR Institute of Engineering and Technology, Coimbatore, Tamilnadu, India; Centre for Nanoscience and Technology, KPR Institute of Engineering and Technology, Coimbatore, Tamilnadu, India.
| | - Muruganandam M
- Project Prioritization, Monitoring & Evaluation and Knowledge Management Unit, ICAR-Indian Institute of Soil & Water Conservation (ICAR-IISWC), Dehradun, India.
| | - Sivarethinamohan Rajamanickam
- Symbiosis Centre for Management Studies (Constituent of Symbiosis International Deemed University), Bengaluru - 560 100, Karnataka, India.
| | - Sujatha Sivarethinamohan
- Department of Civil Engineering, K. Ramakrishnan College of Technology, Trichy, Tamil Nadu, 621 112, India.
| | | | - Priya Velusamy
- Department of Civil Engineering, GMR Institute of Technology, Rajam, Andhra Pradesh, India.
| | - Gomathi R
- Department of Civil Engineering, KPR Institute of Engineering and Technology, Coimbatore, Tamilnadu, India.
| | - Gokulan Ravindiran
- Department of Civil Engineering, VNR Vignana Jyothi Institute of Engineering and Technology, Hyderabad, 500090, Telangana, India.
| | | | - Senthil Kumar Muniasamy
- Department of Biotechnology, Karpaga Vinayaga College of Engineering and Technology, Chengalpattu, 603308, Tamilnadu, India.
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16
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Chen S, Meng Y, Lin S, Yu Y, Xi J. Estimation of sea surface nitrate from space: Current status and future potential. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 899:165690. [PMID: 37487888 DOI: 10.1016/j.scitotenv.2023.165690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 07/18/2023] [Accepted: 07/19/2023] [Indexed: 07/26/2023]
Abstract
Sea surface nitrate (SSN) plays an important role in assessing phytoplankton growth and new production in the ocean. Field sampling of SSN data is important, but limited by data quantity both spatially and temporally. Satellite remote sensing can contribute through providing spatial and temporal data to such assessments. During the past 30 years many studies have been published focusing on SSN retrievals from satellites to a greater or less extent. In this study, we reviewed the progresses of SSN estimation from satellites in both open ocean and coastal waters. Because of the lack of electromagnetic properties of SSN, satellite retrievals of SSN were most realized by developing relationships between SSN and related environmental variables (e.g., sea surface temperature, chlorophyll-a concentration, sea surface salinity), using traditional empirical regressions and novel machine learning techniques. We synthesized most of the peer-reviewed studies for both open and coastal oceans, in terms of study areas, model inputs, regression formulas, and model uncertainties. In general, regional SSN algorithms were most developed in coastal oceans with upwelling or river discharges. The published SSN algorithms had varying uncertainties with a wide range of 0.83-6.87 μmol/L, and the uncertainties were significantly reduced in recent studies, with more field measurements available and better understanding of the physical and biogeochemical processes in driving nitrate dynamics.
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Affiliation(s)
- Shuangling Chen
- State Key Laboratory of Satellite Ocean Environment Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China.
| | - Yu Meng
- State Key Laboratory of Satellite Ocean Environment Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
| | - Sheng Lin
- State Key Laboratory of Satellite Ocean Environment Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
| | - Yi Yu
- State Key Laboratory of Satellite Ocean Environment Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
| | - Jingyuan Xi
- State Key Laboratory of Satellite Ocean Environment Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
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17
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Yuan D, Xu YJ, Ma S, Le J, Zhang K, Miao R, Li S. Nitrogen addition effect overrides warming effect on dissolved CO 2 and phytoplankton structure in shallow lakes. WATER RESEARCH 2023; 244:120437. [PMID: 37556989 DOI: 10.1016/j.watres.2023.120437] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2023] [Revised: 07/09/2023] [Accepted: 07/31/2023] [Indexed: 08/11/2023]
Abstract
Shallow lakes are numerous in all climate zones, but our knowledge about their dissolved carbon dioxide (CO2) response to future climate change and nutrient enrichment is rather limited. Here we performed a mesocosm experiment with four treatments to investigate how warming and nitrogen addition will impact the partial pressure of CO2 (pCO2) and phytoplankton community individually and combined. We found that warming alone had no significant effect on pCO2, while nitrogen addition increased pCO2 significantly. The combined effects of nitrogen addition and warming on pCO2 level were prevalent, indicating that eutrophic shallow lakes would be double-jeopardized in the future climate. Warming and nitrogen addition together also showed to have changed the phytoplankton community structure, suggesting a potential shifting of biological system in shallow lakes under changing climate. These findings highlight the importance of reducing nitrogen pollution to shallow lake systems for sustainable development goal.
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Affiliation(s)
- Danni Yuan
- School of Environmental Ecology and Biological Engineering, Institute of Changjiang Water Environment and Ecological Security, Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemical Technology, Wuhan Institute of Technology, Wuhan 430205, China
| | - Y Jun Xu
- School of Renewable Natural Resources, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA; Coastal Studies Institute, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - Shiwang Ma
- School of Environmental Ecology and Biological Engineering, Institute of Changjiang Water Environment and Ecological Security, Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemical Technology, Wuhan Institute of Technology, Wuhan 430205, China
| | - Jingquan Le
- School of Environmental Ecology and Biological Engineering, Institute of Changjiang Water Environment and Ecological Security, Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemical Technology, Wuhan Institute of Technology, Wuhan 430205, China
| | - Kairui Zhang
- School of Environmental Ecology and Biological Engineering, Institute of Changjiang Water Environment and Ecological Security, Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemical Technology, Wuhan Institute of Technology, Wuhan 430205, China
| | - Rongli Miao
- Hydrobiological Data Analysis Center, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Siyue Li
- School of Environmental Ecology and Biological Engineering, Institute of Changjiang Water Environment and Ecological Security, Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemical Technology, Wuhan Institute of Technology, Wuhan 430205, China.
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18
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El-Sheekh M, Abu-Faddan M, Abo-Shady A, Nassar MZA, Labib W. Seasonal dynamics of phytoplankton in the northern part of Suez Gulf, Egypt. ENVIRONMENTAL MONITORING AND ASSESSMENT 2023; 195:1060. [PMID: 37592114 PMCID: PMC10435403 DOI: 10.1007/s10661-023-11688-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Accepted: 08/07/2023] [Indexed: 08/19/2023]
Abstract
This study was conducted to evaluate the seasonal variability of phytoplankton in the northern part of the Gulf of Suez (Suez Bay), considering the contribution of physicochemical parameters of bay water in shaping the dynamics, and eutrophication assessment. Water and phytoplankton samples were collected seasonally at nine stations in the Suez Bay during the period from the winter to autumn of 2012. A total of 423 phytoplankton species were identified, comprised mainly of 224 diatoms, 127 dinoflagellates, 33 cyanophytes, 20 chlorophytes, and 9 euglenophytes; the rest of the species (10 species) belong to other six groups. Of these, 28 species were potentially harmful. The total phytoplankton abundance exhibits a significant seasonal variation, with the autumn being the most fertile season, followed by the winter due to the proliferation of diatom species Thalassionema nitzschioides and Proboscia alata f. gracillima, respectively. While the seasonal species richness indicates that the winter attained the highest number of species, followed by summer. Generally, the major diatom genera were Chaetoceros (16 species), Navicula (15 species), Nitzschia (15 species), and Amphora (14 species), while dinoflagellates were principally composed of the genera Protoperidinium (34 species), and Tripos (26 species). Water temperature, pH, salinity, nitrate, and nitrite were the most important explanatory parameters in regard to phytoplankton abundance and chlorophyll a concentration. In addition, the phytoplankton stability exhibited a significant positive relationship with the mean values of dissolved oxygen and biological oxygen demand and the variability of salinity and phosphate, while a negative relationship was observed with ammonia and nitrite and the variability of nitrate. Based on the trophic index (TRIX), the bay water was classified as mesotrophic (moderately polluted) for almost the entire year except in the autumn as it turned eutrophic. The results explored the potential importance of the environmental heterogeneity in the bay as a key structuring mechanism of phytoplankton abundance and biomass, influenced by anthropogenic activities.
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Affiliation(s)
- Mostafa El-Sheekh
- Botany Department, Faculty of Science, Tanta University, Tanta, Egypt.
| | | | - Atef Abo-Shady
- Botany Department, Faculty of Science, Tanta University, Tanta, Egypt
| | | | - Wagdy Labib
- National Institute of Oceanography and Fisheries (NIOF), Cairo, Egypt
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19
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Zimmermann HH, Stoof-Leichsenring KR, Dinkel V, Harms L, Schulte L, Hütt MT, Nürnberg D, Tiedemann R, Herzschuh U. Marine ecosystem shifts with deglacial sea-ice loss inferred from ancient DNA shotgun sequencing. Nat Commun 2023; 14:1650. [PMID: 36964154 PMCID: PMC10039020 DOI: 10.1038/s41467-023-36845-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Accepted: 02/20/2023] [Indexed: 03/26/2023] Open
Abstract
Sea ice is a key factor for the functioning and services provided by polar marine ecosystems. However, ecosystem responses to sea-ice loss are largely unknown because time-series data are lacking. Here, we use shotgun metagenomics of marine sedimentary ancient DNA off Kamchatka (Western Bering Sea) covering the last ~20,000 years. We traced shifts from a sea ice-adapted late-glacial ecosystem, characterized by diatoms, copepods, and codfish to an ice-free Holocene characterized by cyanobacteria, salmon, and herring. By providing information about marine ecosystem dynamics across a broad taxonomic spectrum, our data show that ancient DNA will be an important new tool in identifying long-term ecosystem responses to climate transitions for improvements of ocean and cryosphere risk assessments. We conclude that continuing sea-ice decline on the northern Bering Sea shelf might impact on carbon export and disrupt benthic food supply and could allow for a northward expansion of salmon and Pacific herring.
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Affiliation(s)
- Heike H Zimmermann
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Polar Terrestrial Environmental Systems, D-14473, Potsdam, Germany
- Department of Glaciology and Climate, Geological Survey of Denmark and Greenland (GEUS), DK-1350, Copenhagen, Denmark
| | - Kathleen R Stoof-Leichsenring
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Polar Terrestrial Environmental Systems, D-14473, Potsdam, Germany
| | - Viktor Dinkel
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Polar Terrestrial Environmental Systems, D-14473, Potsdam, Germany
- Constructor University Bremen, Computational Systems Biology, Bremen, D-28759, Germany
| | - Lars Harms
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Data Science Support, D-27568, Bremerhaven, Germany
| | - Luise Schulte
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Polar Terrestrial Environmental Systems, D-14473, Potsdam, Germany
| | - Marc-Thorsten Hütt
- Constructor University Bremen, Computational Systems Biology, Bremen, D-28759, Germany
| | - Dirk Nürnberg
- GEOMAR Helmholtz Centre for Ocean Research Kiel, Ocean circulation and climate dynamics, D-24148, Kiel, Germany
| | - Ralf Tiedemann
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Marine Geology, D-27568, Bremerhaven, Germany
- MARUM, Center for Marine Environmental Sciences, University of Bremen, D-28334, Bremen, Germany
| | - Ulrike Herzschuh
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Polar Terrestrial Environmental Systems, D-14473, Potsdam, Germany.
- University of Potsdam, Institute of Biochemistry and Biology, D-14476, Potsdam, Germany.
- University of Potsdam, Institute of Environmental Sciences and Geography, D-14476, Potsdam, Germany.
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20
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Sun Y, Li H, Wang X, Jin Y, Nagai S, Lin S. Phytoplankton and Microzooplankton Community Structure and Assembly Mechanisms in Northwestern Pacific Ocean Estuaries with Environmental Heterogeneity and Geographic Segregation. Microbiol Spectr 2023; 11:e0492622. [PMID: 36939346 PMCID: PMC10100884 DOI: 10.1128/spectrum.04926-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Accepted: 02/22/2023] [Indexed: 03/21/2023] Open
Abstract
Phytoplankton and microzooplankton are crucial players in marine ecosystems and first responders to environmental changes, but their community structures and how they are shaped by environmental conditions have rarely been studied simultaneously. In this study, we conducted an eDNA metabarcoding sequencing combined with multiple statistical methods to simultaneously analyze the phytoplankton and microzooplankton in Liaohe (LH) and Yalujiang (YLJ) estuaries. The major objective was to examine how plankton community structure and assembly mechanism may differ between two estuaries with similar latitudinal position and climate but geographical segregation and differential level of urbanization (more in LH). Clear differences in diversity and composition of phytoplankton and microzooplankton communities between LH and YLJ estuaries were observed. Richness of phytoplankton was significantly higher in LH than YLJ, while richness of microzooplankton was higher in YLJ. The magnitude of intrahabitat variations in phytoplankton communities was significantly stronger than that of microzooplankton. Some phytoplankton and microzooplankton taxa also showed interhabitat differences in their relative abundances. Phytoplankton showed a stronger geographic distance-decay of similarity than microzooplankton, while significant environmental distance-decay of similarity in microzooplankton was found in the less urbanized YLJ estuary. Community assembly of phytoplankton was, based on the neutral community models, driven primarily by stochastic processes, while deterministic processes contributed more for microzooplankton. Furthermore, we detected wider habitat niche breadths and stronger dispersal abilities in phytoplankton than in microzooplankton. These results suggest that passive dispersal shapes the phytoplankton community whereas environmental selection shapes the microzooplankton community. IMPORTANCE Understanding the underlying mechanisms shaping a metacommunity is useful to management for improving the ecosystem function. The research presented in the manuscript mainly tried to address the effects of habitat geography and environmental conditions on the phytoplankton and microzooplankton communities, and the underlying mechanisms of community assembly in temperate estuaries. In order to achieve this purpose, we developed a metabarcoding sequencing method based on 18S rRNA gene. The phytoplankton and microzooplankton communities from two estuaries with similar latitude and climatic conditions but obvious geographical segregation and significant environmental heterogeneity were investigated. The results of our study could lay a solid foundation for ascertaining phytoplankton and microzooplankton communities in estuaries with obvious environmental heterogeneity and geographic segregation and mechanisms underlying community assembly.
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Affiliation(s)
- Yi Sun
- State Environmental Protection Key Laboratory of Coastal Ecosystem, National Marine Environmental Monitoring Center, Dalian, China
| | - Hongjun Li
- State Environmental Protection Key Laboratory of Coastal Ecosystem, National Marine Environmental Monitoring Center, Dalian, China
| | - Xiaocheng Wang
- State Environmental Protection Key Laboratory of Coastal Ecosystem, National Marine Environmental Monitoring Center, Dalian, China
| | - Yuan Jin
- State Environmental Protection Key Laboratory of Coastal Ecosystem, National Marine Environmental Monitoring Center, Dalian, China
| | - Satoshi Nagai
- Coastal and Inland Fisheries Ecosystems Division, Fisheries Technology Institute, Japan Fisheries Research and Education Agency, Kanagawa, Japan
| | - Senjie Lin
- Department of Marine Sciences, University of Connecticut, Groton, Connecticut, USA
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21
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Understanding opposing predictions of Prochlorococcus in a changing climate. Nat Commun 2023; 14:1445. [PMID: 36922531 PMCID: PMC10017810 DOI: 10.1038/s41467-023-36928-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Accepted: 02/23/2023] [Indexed: 03/17/2023] Open
Abstract
Statistically derived species distribution models (SDMs) are increasingly used to predict ecological changes on a warming planet. For Prochlorococcus, the most abundant phytoplankton, an established statistical prediction conflicts with dynamical models as they predict large, opposite, changes in abundance. We probe the SDM at various spatial-temporal scales, showing that light and temperature fail to explain both temporal fluctuations and sharp spatial transitions. Strong correlations between changes in temperature and population emerge only at very large spatial scales, as transects pass through transitions between regions of high and low abundance. Furthermore, a two-state model based on a temperature threshold matches the original SDM in the surface ocean. We conclude that the original SDM has little power to predict changes when Prochlorococcus is already abundant, which resolves the conflict with dynamical models. Our conclusion suggests that SDMs should prove efficacy across multiple spatial-temporal scales before being trusted in a changing ocean.
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22
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Kholssi R, Lougraimzi H, Moreno-Garrido I. Effects of global environmental change on microalgal photosynthesis, growth and their distribution. MARINE ENVIRONMENTAL RESEARCH 2023; 184:105877. [PMID: 36640723 DOI: 10.1016/j.marenvres.2023.105877] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Revised: 01/06/2023] [Accepted: 01/08/2023] [Indexed: 06/17/2023]
Abstract
Global climate change (GCC) constitutes a complex challenge posing a serious threat to biodiversity and ecosystems in the next decades. There are several recent studies dealing with the potential effect of increased temperature, decrease of pH or shifts in salinity, as well as cascading events of GCC and their impact on human-environment systems. Microalgae as primary producers are a sensitive compartment of the marine ecosystems to all those changes. However, the potential consequences of these changes for marine microalgae have received relatively little attention and they are still not well understood. Thus, there is an urgent need to explore and understand the effects generated by multiple climatic changes on marine microalgae growth and biodiversity. Therefore, this review aimed to compare and contrast mechanisms that marine microalgae exhibit to directly respond to harsh conditions associated with GCC and the potential consequences of those changes in marine microalgal populations. Literature shows that microalgae responses to environmental stressors such as temperature were affected differently. A stress caused by salinity might slow down cell division, reduces size, ceases motility, and triggers palmelloid formation in microalgae community, but some of these changes are strongly species-specific. UV irradiance can potentially lead to an oxidative stress in microalgae, promoting the production of reactive oxygen species (ROS) or induce direct physical damage on microalgae, then inhibiting the growth of microalgae. Moreover, pH could impact many groups of microalgae being more tolerant of certain pH shifts, while others were sensitive to changes of just small units (such as coccolithophorids) and subsequently affect the species at a higher trophic level, but also total vertical carbon transport in oceans. Overall, this review highlights the importance of examining effects of multiple stressors, considering multiple responses to understand the complexity behind stressor interactions.
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Affiliation(s)
- Rajaa Kholssi
- Composting Research Group, Faculty of Sciences, University of Burgos, Burgos, Spain; Ecology and Coastal Management, Institute of Marine Sciences of Andalusia (ICMAN-CSIC), Campus Río San Pedro, 11510, Puerto Real, Cádiz, Spain.
| | - Hanane Lougraimzi
- Laboratory of Plant, Animal and Agro-Industry Productions, Faculty of Sciences, Ibn Tofail University, BP: 242, 14000, Kenitra, Morocco
| | - Ignacio Moreno-Garrido
- Ecology and Coastal Management, Institute of Marine Sciences of Andalusia (ICMAN-CSIC), Campus Río San Pedro, 11510, Puerto Real, Cádiz, Spain
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23
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Díez J, López-Lozano A, Domínguez-Martín MA, Gómez-Baena G, Muñoz-Marín MC, Melero-Rubio Y, García-Fernández JM. Regulatory and metabolic adaptations in the nitrogen assimilation of marine picocyanobacteria. FEMS Microbiol Rev 2023; 47:6794272. [PMID: 36323406 DOI: 10.1093/femsre/fuac043] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Revised: 10/25/2022] [Accepted: 10/28/2022] [Indexed: 11/17/2022] Open
Abstract
Prochlorococcus and Synechococcus are the two most abundant photosynthetic organisms on Earth, with a strong influence on the biogeochemical carbon and nitrogen cycles. Early reports demonstrated the streamlining of regulatory mechanisms in nitrogen metabolism and the removal of genes not strictly essential. The availability of a large series of genomes, and the utilization of latest generation molecular techniques have allowed elucidating the main mechanisms developed by marine picocyanobacteria to adapt to the environments where they thrive, with a particular interest in the strains inhabiting oligotrophic oceans. Given that nitrogen is often limited in those environments, a series of studies have explored the strategies utilized by Prochlorococcus and Synechococcus to exploit the low concentrations of nitrogen-containing molecules available in large areas of the oceans. These strategies include the reduction in the GC and the cellular protein contents; the utilization of truncated proteins; a reduced average amount of N in the proteome; the development of metabolic mechanisms to perceive and utilize nanomolar nitrate concentrations; and the reduced responsiveness of key molecular regulatory systems such as NtcA to 2-oxoglutarate. These findings are in sharp contrast with the large body of knowledge obtained in freshwater cyanobacteria. We will outline the main discoveries, stressing their relevance to the ecological success of these important microorganisms.
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Affiliation(s)
- J Díez
- Departamento de Bioquímica y Biología Molecular, Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, Córdoba,14001, Spain
| | - A López-Lozano
- Departamento de Bioquímica y Biología Molecular, Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, Córdoba,14001, Spain
| | - M A Domínguez-Martín
- Departamento de Bioquímica y Biología Molecular, Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, Córdoba,14001, Spain
| | - G Gómez-Baena
- Departamento de Bioquímica y Biología Molecular, Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, Córdoba,14001, Spain
| | - M C Muñoz-Marín
- Departamento de Bioquímica y Biología Molecular, Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, Córdoba,14001, Spain
| | - Y Melero-Rubio
- Departamento de Bioquímica y Biología Molecular, Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, Córdoba,14001, Spain
| | - J M García-Fernández
- Departamento de Bioquímica y Biología Molecular, Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, Córdoba,14001, Spain
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24
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Lobus NV, Kulikovskiy MS. The Co-Evolution Aspects of the Biogeochemical Role of Phytoplankton in Aquatic Ecosystems: A Review. BIOLOGY 2023; 12:biology12010092. [PMID: 36671784 PMCID: PMC9855382 DOI: 10.3390/biology12010092] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Revised: 12/12/2022] [Accepted: 01/03/2023] [Indexed: 01/11/2023]
Abstract
In freshwater and marine ecosystems, the phytoplankton community is based on microalgae and cyanobacteria, which include phylogenetically very diverse groups of oxygenic photoautotrophs. In the process of evolution, they developed a wide range of bio(geo)chemical adaptations that allow them to effectively use solar radiation, CO2, and nutrients, as well as major and trace elements, to form O2 and organic compounds with a high chemical bond energy. The inclusion of chemical elements in the key processes of energy and plastic metabolism in the cell is determined by redox conditions and the abundance and metabolic availability of elements in the paleoenvironment. Geochemical evolution, which proceeded simultaneously with the evolution of biosystems, contributed to an increase in the number of metals and trace elements acting as cofactors of enzymes involved in metabolism and maintaining homeostasis in the first photoautotrophs. The diversity of metal-containing enzymes and the adaptive ability to replace one element with another without losing the functional properties of enzymes ensured the high ecological plasticity of species and allowed microalgae and cyanobacteria to successfully colonize a wide variety of habitats. In this review, we consider the main aspects of the modern concepts of the biogeochemical evolution of aquatic ecosystems and the role of some metals in the main bioenergetic processes in photosynthetic prokaryotes and eukaryotes. We present generalized data on the efficiency of the assimilation of key nutrients by phytoplankton and their importance in the cycle of carbon, silicon, nitrogen, phosphorus, sulfur, and iron. This article presents modern views on the evolutionary prerequisites for the formation of elemental signatures in different systematic groups of microalgae, as well as the possibility of using the stoichiometric ratio in the study of biological and geochemical processes in aquatic ecosystems.
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25
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Effect of Rising Temperature and Carbon Dioxide on the Growth, Photophysiology, and Elemental Ratios of Marine Synechococcus: A Multistressor Approach. SUSTAINABILITY 2022. [DOI: 10.3390/su14159508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Marine picocyanobacteria belonging to the genus Synechococcus are one of the most abundant photosynthetic organisms on Earth. They are often exposed to large fluctuations in temperature and CO2 concentrations in the ocean, which are expected to further change in the coming decades due to ocean acidification and warming resulting from rising atmospheric CO2 levels. To decipher the effect of changing temperature and CO2 levels on Synechococcus, six Synechococcus strains previously isolated from various coastal and open ocean sites were exposed to a matrix of three different temperatures (22 °C, 24 °C and 26 °C) and CO2 levels (400 ppm, 600 ppm and 800 ppm). Thereafter, the specific growth rates, photophysiological parameters (σPSII and Fv/Fm), C/N (mol/mol) ratios and the nitrogen stable isotopic composition (δ15N (‰)) of the strains were measured. Temperature was found to be a stronger driver of the changes in specific growth rates and photophysiology in the Synechococcus strains. Carbon-concentrating mechanisms (CCM) operational in these strains that shield the photosynthetic machinery from directly sensing ambient changes in CO2 possibly played a major role in causing minimal changes in the specific growth rates under the varying CO2 levels.
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26
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Compositional and Metabolic Responses of Autotrophic Microbial Community to Salinity in Lacustrine Environments. mSystems 2022; 7:e0033522. [PMID: 35862818 PMCID: PMC9426519 DOI: 10.1128/msystems.00335-22] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The compositional and physiological responses of autotrophic microbiotas to salinity in lakes remain unclear. In this study, the community composition and carbon fixation pathways of autotrophic microorganisms in lacustrine sediments with a salinity gradient (82.6 g/L to 0.54 g/L) were investigated by using metagenomic analysis. A total of 117 metagenome-assembled genomes (MAGs) with carbon fixation potentially belonging to 20 phyla were obtained. The abundance of these potential autotrophs increased significantly with decreasing salinity, and the variation of sediment autotrophic microbial communities was mainly affected by salinity, pH, and total organic carbon. Notably, along the decreasing salinity gradient, the dominant lineage shifted from Desulfobacterota to Proteobacteria. Meanwhile, the dominant carbon fixation pathway shifted from the Wood-Lungdahl pathway to the less-energy-efficient Calvin-Benson-Bassham cycle, with glycolysis shifting from the Embden-Meyerhof-Parnas pathway to the less-exergonic Entner-Doudoroff pathway. These results suggest that the physiological efficiency of autotrophic microorganisms decreased when the environmental salinity became lower. Metabolic inference of these MAGs revealed that carbon fixation may be coupled to the oxidation of reduced sulfur compounds and ferrous iron, dissimilatory nitrate reduction at low salinity, and dissimilatory sulfate reduction in hypersaline sediments. These results extend our understanding of metabolic versatility and niche diversity of autotrophic microorganisms in saline environments and shed light on the response of autotrophic microbiomes to salinity. These findings are of great significance for understanding the impact of desalination caused by climate warming on the carbon cycle of saline lake ecosystems. IMPORTANCE The Qinghai-Tibetan lakes are experiencing water increase and salinity decrease due to climate warming. However, little is known about how the salinity decrease will affect the composition of autotrophic microbial populations and their carbon fixation pathways. In this study, we used genome-resolved metagenomics to interpret the dynamic changes in the autotrophic microbial community and metabolic pathways along a salinity gradient. The results showed that desalination drove the shift of the dominant microbial lineage from Desulfobacterota to Proteobacteria, enriched autotrophs with lower physiological efficiency pathways, and enhanced coupling between the carbon cycle and other element cycles. These results can predict the future response of microbial communities to lake desalination and improve our understanding of the effect of climate warming on the carbon cycle in saline aquatic ecosystems.
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27
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Milke F, Sanchez-Garcia S, Dlugosch L, McNichol J, Fuhrman J, Simon M, Wagner-Döbler I. Composition and Biogeography of Planktonic Pro- and Eukaryotic Communities in the Atlantic Ocean: Primer Choice Matters. Front Microbiol 2022; 13:895875. [PMID: 35836413 PMCID: PMC9273945 DOI: 10.3389/fmicb.2022.895875] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Accepted: 05/18/2022] [Indexed: 01/02/2023] Open
Abstract
Basin-scale biogeographic observations of marine pelagic pro- and eukaryotic communities are necessary to understand forces driving community composition and for providing a baseline to monitor global change. Deep sequencing of rRNA genes provides community composition at high resolution; yet, it is unclear how the choice of primers affects biogeographic patterns. Here, we re-amplified 16S rRNA genes from DNA sampled during R/V Polarstern Cruise ANT28-5 over a latitudinal transect across the Atlantic Ocean from 52°S to 47°N using universal V4-V5 primers and compared the results with those obtained previously with V5-V6 bacteria-specific primers. For validation of our results, we inferred community composition based on 16S rRNA genes of metagenomes from the same stations and single amplified genomes (SAGs) from the Global Ocean Reference Genome (GORG) database. We found that the universal V4-V5 primers retrieved SAR11 clades with similar relative proportions as those found in the GORG database while the V5-V6 primers recovered strongly diverging clade abundances. We confirmed an inverse bell-shaped distance-decay relationship and a latitudinal diversity gradient that did not decline linearly with absolute latitude in the Atlantic Ocean. Patterns were modified by sampling depth, sequencing depth, choice of primers, and abundance filtering. Especially richness patterns were not robust to methodological change. This study offers a detailed picture of the Atlantic Ocean microbiome using a universal set of PCR primers that allow for the conjunction of biogeographical patterns among organisms from different domains of life.
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Affiliation(s)
- Felix Milke
- Institute for Chmistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany
| | - Selene Sanchez-Garcia
- Institute of Microbiology, Technical University of Braunschweig, Braunschweig, Germany
| | - Leon Dlugosch
- Institute for Chmistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany
| | - Jesse McNichol
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, United States
| | - Jed Fuhrman
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, United States
| | - Meinhard Simon
- Institute for Chmistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany
- Helmholtz Institute for Functional Marine Biodiversity, Oldenburg, Germany
| | - Irene Wagner-Döbler
- Institute of Microbiology, Technical University of Braunschweig, Braunschweig, Germany
- *Correspondence: Irene Wagner-Döbler,
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28
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Burlacot A, Dao O, Auroy P, Cuiné S, Li-Beisson Y, Peltier G. Alternative photosynthesis pathways drive the algal CO 2-concentrating mechanism. Nature 2022; 605:366-371. [PMID: 35477755 DOI: 10.1038/s41586-022-04662-9] [Citation(s) in RCA: 44] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Accepted: 03/18/2022] [Indexed: 12/13/2022]
Abstract
Global photosynthesis consumes ten times more CO2 than net anthropogenic emissions, and microalgae account for nearly half of this consumption1. The high efficiency of algal photosynthesis relies on a mechanism concentrating CO2 (CCM) at the catalytic site of the carboxylating enzyme RuBisCO, which enhances CO2 fixation2. Although many cellular components involved in the transport and sequestration of inorganic carbon have been identified3,4, how microalgae supply energy to concentrate CO2 against a thermodynamic gradient remains unknown4-6. Here we show that in the green alga Chlamydomonas reinhardtii, the combined action of cyclic electron flow and O2 photoreduction-which depend on PGRL1 and flavodiiron proteins, respectively-generate a low luminal pH that is essential for CCM function. We suggest that luminal protons are used downstream of thylakoid bestrophin-like transporters, probably for the conversion of bicarbonate to CO2. We further establish that an electron flow from chloroplast to mitochondria contributes to energizing non-thylakoid inorganic carbon transporters, probably by supplying ATP. We propose an integrated view of the network supplying energy to the CCM, and describe how algal cells distribute energy from photosynthesis to power different CCM processes. These results suggest a route for the transfer of a functional algal CCM to plants to improve crop productivity.
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Affiliation(s)
- Adrien Burlacot
- Aix Marseille Univ, CEA, CNRS, Institut de Biosciences et Biotechnologies Aix-Marseille, CEA Cadarache, Saint-Paul-lez-Durance, France.,Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, USA
| | - Ousmane Dao
- Aix Marseille Univ, CEA, CNRS, Institut de Biosciences et Biotechnologies Aix-Marseille, CEA Cadarache, Saint-Paul-lez-Durance, France
| | - Pascaline Auroy
- Aix Marseille Univ, CEA, CNRS, Institut de Biosciences et Biotechnologies Aix-Marseille, CEA Cadarache, Saint-Paul-lez-Durance, France
| | - Stephan Cuiné
- Aix Marseille Univ, CEA, CNRS, Institut de Biosciences et Biotechnologies Aix-Marseille, CEA Cadarache, Saint-Paul-lez-Durance, France
| | - Yonghua Li-Beisson
- Aix Marseille Univ, CEA, CNRS, Institut de Biosciences et Biotechnologies Aix-Marseille, CEA Cadarache, Saint-Paul-lez-Durance, France
| | - Gilles Peltier
- Aix Marseille Univ, CEA, CNRS, Institut de Biosciences et Biotechnologies Aix-Marseille, CEA Cadarache, Saint-Paul-lez-Durance, France.
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29
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Wang S, Gao Y, Jia J, Lu Y, Sun K, Ha X, Li Z, Deng W. Vertically stratified water source characteristics and associated driving mechanisms of particulate organic carbon in a large floodplain lake system. WATER RESEARCH 2022; 209:117963. [PMID: 34933159 DOI: 10.1016/j.watres.2021.117963] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 12/08/2021] [Accepted: 12/12/2021] [Indexed: 06/14/2023]
Abstract
Particulate organic carbon (POC) is an important component of lake organic carbon (C) pools, of which different factors drive vertical distributions and sources. This study used the dual stable isotope (δ13C and δ15N) approach to investigate vertical POC sources and drivers in a large floodplain lake system. Findings showed that POC composition gradually changed from endogenous dominant to exogenous dominant sequentially from the surface layer to the bottom layer of Lake Poyang. Environmental factors associated with phytoplankton photosynthesis as well as nutrient levels primarily drove surface POC. Moreover, soil erosion, sediment deposition, and resuspension strongly affected POC distribution and composition in the middle and bottom layers of the lake. POC sources were also affected by factors associated with vertical mixing, such as wind speed and water depth. Litter from C3 plants significantly contributed to POC concentrations in the middle and bottom layers of the lake. Results from this study can benefit our overall understanding of the potential driving mechanisms of lake C cycling processes, aquatic ecosystem functions, and pollutant migration.
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Affiliation(s)
- Shuoyue Wang
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yang Gao
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China.
| | - Junjie Jia
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Yao Lu
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Kun Sun
- University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Xianrui Ha
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Zhaoxi Li
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Wanqian Deng
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
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Ilicic D, Grossart HP. Basal Parasitic Fungi in Marine Food Webs-A Mystery Yet to Unravel. J Fungi (Basel) 2022; 8:114. [PMID: 35205868 PMCID: PMC8874645 DOI: 10.3390/jof8020114] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 01/20/2022] [Accepted: 01/25/2022] [Indexed: 02/01/2023] Open
Abstract
Although aquatic and parasitic fungi have been well known for more than 100 years, they have only recently received increased awareness due to their key roles in microbial food webs and biogeochemical cycles. There is growing evidence indicating that fungi inhabit a wide range of marine habitats, from the deep sea all the way to surface waters, and recent advances in molecular tools, in particular metagenome approaches, reveal that their diversity is much greater and their ecological roles more important than previously considered. Parasitism constitutes one of the most widespread ecological interactions in nature, occurring in almost all environments. Despite that, the diversity of fungal parasites, their ecological functions, and, in particular their interactions with other microorganisms remain largely speculative, unexplored and are often missing from current theoretical concepts in marine ecology and biogeochemistry. In this review, we summarize and discuss recent research avenues on parasitic fungi and their ecological potential in marine ecosystems, e.g., the fungal shunt, and emphasize the need for further research.
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Affiliation(s)
- Doris Ilicic
- Leibniz Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhütte 2, 16775 Stechlin, Germany;
| | - Hans-Peter Grossart
- Leibniz Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhütte 2, 16775 Stechlin, Germany;
- Institute of Biochemistry and Biology, Potsdam University, Maulbeerallee 2, 14469 Potsdam, Germany
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Coyne KJ, Salvitti LR, Mangum AM, Ozbay G, Main CR, Kouhanestani ZM, Warner ME. Interactive effects of light, CO2 and temperature on growth and resource partitioning by the mixotrophic dinoflagellate, Karlodinium veneficum. PLoS One 2021; 16:e0259161. [PMID: 34705875 PMCID: PMC8550395 DOI: 10.1371/journal.pone.0259161] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Accepted: 10/14/2021] [Indexed: 11/25/2022] Open
Abstract
There is little information on the impacts of climate change on resource partitioning for mixotrophic phytoplankton. Here, we investigated the hypothesis that light interacts with temperature and CO2 to affect changes in growth and cellular carbon and nitrogen content of the mixotrophic dinoflagellate, Karlodinium veneficum, with increasing cellular carbon and nitrogen content under low light conditions and increased growth under high light conditions. Using a multifactorial design, the interactive effects of light, temperature and CO2 were investigated on K. veneficum at ambient temperature and CO2 levels (25°C, 375 ppm), high temperature (30°C, 375 ppm CO2), high CO2 (30°C, 750 ppm CO2), or a combination of both high temperature and CO2 (30°C, 750 ppm CO2) at low light intensities (LL: 70 μmol photons m-2 s-2) and light-saturated conditions (HL: 140 μmol photons m-2 s-2). Results revealed significant interactions between light and temperature for all parameters. Growth rates were not significantly different among LL treatments, but increased significantly with temperature or a combination of elevated temperature and CO2 under HL compared to ambient conditions. Particulate carbon and nitrogen content increased in response to temperature or a combination of elevated temperature and CO2 under LL conditions, but significantly decreased in HL cultures exposed to elevated temperature and/or CO2 compared to ambient conditions at HL. Significant increases in C:N ratios were observed only in the combined treatment under LL, suggesting a synergistic effect of temperature and CO2 on carbon assimilation, while increases in C:N under HL were driven only by an increase in CO2. Results indicate light-driven variations in growth and nutrient acquisition strategies for K. veneficum that may benefit this species under anticipated climate change conditions (elevated light, temperature and pCO2) while also affecting trophic transfer efficiency during blooms of this species.
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Affiliation(s)
- Kathryn J. Coyne
- College of Earth, Ocean, and Environment, University of Delaware, Lewes, Delaware, United States of America
- * E-mail:
| | - Lauren R. Salvitti
- College of Earth, Ocean, and Environment, University of Delaware, Lewes, Delaware, United States of America
| | - Alicia M. Mangum
- Department of Agriculture and Natural Resources, Delaware State University, Dover, Delaware, United States of America
| | - Gulnihal Ozbay
- Department of Agriculture and Natural Resources, Delaware State University, Dover, Delaware, United States of America
| | - Christopher R. Main
- College of Earth, Ocean, and Environment, University of Delaware, Lewes, Delaware, United States of America
- Department of Natural Resources and Environmental Control, Dover, Delaware, United States of America
| | - Zohreh M. Kouhanestani
- Department of Agriculture and Natural Resources, Delaware State University, Dover, Delaware, United States of America
- Department of Fisheries and Environmental Sciences, Gorgan University of Agricultural Science and Natural Resources, Gorgan, Golestan, Iran
| | - Mark E. Warner
- College of Earth, Ocean, and Environment, University of Delaware, Lewes, Delaware, United States of America
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Antacli JC, Hernando MP, De Troch M, Malanga G, Mendiolar M, Hernández DR, Varela DE, Antoni J, Sahade RJ, Schloss IR. Ocean warming and freshening effects on lipid metabolism in coastal Antarctic phytoplankton assemblages dominated by sub-Antarctic species. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 790:147879. [PMID: 34380283 DOI: 10.1016/j.scitotenv.2021.147879] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Revised: 04/04/2021] [Accepted: 05/14/2021] [Indexed: 06/13/2023]
Abstract
Marine phytoplankton can utilize different strategies to cope with ocean warming and freshening from glacial melting in polar regions, which are disproportionally impacted by global warming. In the present study, we investigated the individual and combined effects of a 4 °C increase in seawater temperature (T+) and a 4 psu decrease in salinity (S-) from ambient values on biomass, nutrient use, fatty acid composition and lipid damage biochemistry of natural phytoplankton assemblages from Potter Cove (25 de Mayo/King George Island, Antarctica). Experiments were conducted by exposing the assemblages to four treatments during a 7-day incubation period using microcosm located along shore from January 23 to 31, 2016. The N:P ratio decreased in all treatments from day 4 onwards, but especially under high temperature (T+). Lipid damage was mainly detected under S0T+ and S-T+ conditions, and it decreased when the production of the antioxidant α-tocopherol increased. This antioxidant protection resulted in a build-up of phytoplankton biomass, especially at T+. Under the combined effect of both stressors (S-T+), the concentration of ω3 fatty acids increased, potentially leading to higher-quality FA composition. These results, which were related to the dominance of sub-Antarctic species in phytoplankton assemblages, contribute to the understanding of the potential consequences of ocean warming and increase seawater freshening on the trophic webs of the Southern Ocean.
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Affiliation(s)
- J C Antacli
- Universidad Nacional de Córdoba, Facultad de Ciencias Exactas, Físicas y Naturales, Ecología Marina. Av. Vélez Sarsfield 299, 5000 Córdoba Capital, Argentina; Instituto de Diversidad y Ecología Animal (IDEA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Córdoba Capital, Argentina.
| | - M P Hernando
- Departamento de Radiobiología, Comisión Nacional de Energía Atómica, Av. Gral. Paz 1499, San Martín, Buenos Aires, Argentina; Red de Investigación de estresores Marinos-costeros en América Latina y el Caribe, REMARCO
| | - M De Troch
- Ghent University, Marine Biology, Krijgslaan 281-S8, B-9000 Ghent, Belgium
| | - G Malanga
- Instituto de Bioquímica y Medicina Molecular (IBIMOL), Universidad de Buenos Aires (UBA)- CONICET. Fisicoquímica, Facultad de Farmacia y Bioquímica, Junín 956 (C1113AAD), Buenos Aires, Argentina
| | - M Mendiolar
- Instituto Nacional de Investigación y Desarrollo Pesquero (INIDEP), Paseo Victoria Ocampo No 1, B7602HSA Mar del Plata, Argentina
| | - D R Hernández
- Instituto Nacional de Investigación y Desarrollo Pesquero (INIDEP), Paseo Victoria Ocampo No 1, B7602HSA Mar del Plata, Argentina
| | - D E Varela
- Department of Biology and School of Earth and Ocean Sciences, University of Victoria, Victoria, B.C., Canada
| | - J Antoni
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina; Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, Paseo del Bosque s/n, 1900 La Plata, Argentina
| | - R J Sahade
- Universidad Nacional de Córdoba, Facultad de Ciencias Exactas, Físicas y Naturales, Ecología Marina. Av. Vélez Sarsfield 299, 5000 Córdoba Capital, Argentina; Instituto de Diversidad y Ecología Animal (IDEA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Córdoba Capital, Argentina
| | - I R Schloss
- Instituto Antártico Argentino, 25 de Mayo 1143, San Martín, Buenos Aires, Argentina; Centro Austral de Investigaciones Científicas (CADIC, CONICET), Bernardo Houssay 200, Ushuaia, Tierra del Fuego, Argentina; Universidad Nacional de Tierra del Fuego, Ushuaia, Tierra del Fuego, Argentina
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Cheung YY, Cheung S, Mak J, Liu K, Xia X, Zhang X, Yung Y, Liu H. Distinct interaction effects of warming and anthropogenic input on diatoms and dinoflagellates in an urbanized estuarine ecosystem. GLOBAL CHANGE BIOLOGY 2021; 27:3463-3473. [PMID: 33934458 DOI: 10.1111/gcb.15667] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Accepted: 04/20/2021] [Indexed: 06/12/2023]
Abstract
Diatoms and dinoflagellates are two major bloom-forming phytoplankton groups in coastal ecosystems and their dominances will notably affect the marine ecosystems. By analyzing an 18-year monthly monitoring dataset (2000-2017) in the Pearl River Estuary (one of the most highly urbanized and populated estuarine in the world), we observe an increasing trend of the diatom to dinoflagellate ratio (Diatom/Dino). As revealed by multiple statistical models (generalized additive mixed model, random forest, and gradient boosting algorithms), both groups are positively correlated with temperature. Diatoms are positively correlated with nitrate and negatively correlated with ammonium while dinoflagellates show an opposite pattern. The Diatom/Dino trend is explained by an altered nutrient composition caused by a decadal increase in anthropogenic input, at which nitrate increased rapidly while ammonium and phosphate were relatively constant. Regarding the interaction of warming and nutrient dynamics, we observe an additive effect of warming and nitrate enrichment that promotes the increase in diatom cell density, while the dinoflagellate cell density only increases with warming when nutrients are depleted. Our models predict that the Diatom/Dino ratio will further increase with increasing anthropogenic input and global warming in subtropical estuarine ecosystems with nitrate as the dominant inorganic nitrogen; its ecological consequences are worthy of further investigation.
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Affiliation(s)
- Yan Yin Cheung
- Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China
| | - Shunyan Cheung
- Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China
- Southern Marine Science & Engineering Guangdong Laboratory (Zhuhai), Zhuhai, China
| | - Julian Mak
- Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China
- Hong Kong Branch of Southern Marine Science & Engineering Guangdong Laboratory, The Hong Kong University of Science and Technology, Hong Kong SAR, China
| | - Kailin Liu
- Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China
| | - Xiaomin Xia
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
| | - Xiaodong Zhang
- Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China
| | - Yingkit Yung
- Water Policy and Planning Group, Hong Kong Government Environmental Protection Department, Hong Kong SAR, China
| | - Hongbin Liu
- Department of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China
- Hong Kong Branch of Southern Marine Science & Engineering Guangdong Laboratory, The Hong Kong University of Science and Technology, Hong Kong SAR, China
- State Key Laboratory of Marine Pollution, Hong Kong SAR, China
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Chaffron S, Delage E, Budinich M, Vintache D, Henry N, Nef C, Ardyna M, Zayed AA, Junger PC, Galand PE, Lovejoy C, Murray AE, Sarmento H, Acinas SG, Babin M, Iudicone D, Jaillon O, Karsenti E, Wincker P, Karp-Boss L, Sullivan MB, Bowler C, de Vargas C, Eveillard D. Environmental vulnerability of the global ocean epipelagic plankton community interactome. SCIENCE ADVANCES 2021; 7:eabg1921. [PMID: 34452910 PMCID: PMC8397264 DOI: 10.1126/sciadv.abg1921] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Accepted: 07/09/2021] [Indexed: 05/05/2023]
Abstract
Marine plankton form complex communities of interacting organisms at the base of the food web, which sustain oceanic biogeochemical cycles and help regulate climate. Although global surveys are starting to reveal ecological drivers underlying planktonic community structure and predicted climate change responses, it is unclear how community-scale species interactions will be affected by climate change. Here, we leveraged Tara Oceans sampling to infer a global ocean cross-domain plankton co-occurrence network-the community interactome-and used niche modeling to assess its vulnerabilities to environmental change. Globally, this revealed a plankton interactome self-organized latitudinally into marine biomes (Trades, Westerlies, Polar) and more connected poleward. Integrated niche modeling revealed biome-specific community interactome responses to environmental change and forecasted the most affected lineages for each community. These results provide baseline approaches to assess community structure and organismal interactions under climate scenarios while identifying plausible plankton bioindicators for ocean monitoring of climate change.
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Affiliation(s)
- Samuel Chaffron
- Université de Nantes, CNRS UMR 6004, LS2N, F-44000 Nantes, France.
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
| | - Erwan Delage
- Université de Nantes, CNRS UMR 6004, LS2N, F-44000 Nantes, France
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
| | - Marko Budinich
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
- Sorbonne Université, CNRS, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, 29680 Roscoff, France
| | - Damien Vintache
- Université de Nantes, CNRS UMR 6004, LS2N, F-44000 Nantes, France
| | - Nicolas Henry
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
- Sorbonne Université, CNRS, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, 29680 Roscoff, France
| | - Charlotte Nef
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
- Institut de Biologie de l'École Normale Supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, PSL Université Paris, 75005 Paris, France
| | - Mathieu Ardyna
- Department of Earth System Science, Stanford University, Stanford, CA 94305, USA
- Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche, LOV, F-06230, Villefranche-sur-Mer, Paris, France
| | - Ahmed A Zayed
- Department of Microbiology, Ohio State University, Columbus, OH 43210, USA
| | - Pedro C Junger
- Department of Hydrobiology, Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luiz, 13565-905 São Carlos, SP, Brazil
| | - Pierre E Galand
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
- Sorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques, LECOB, Banyuls-sur-Mer, 66500 Paris, France
| | - Connie Lovejoy
- Département de biologie, Faculté des sciences et Institut de biologie intégrative et des systèmes (IBIS) 1030, ave de la Médecine, Université Laval, Québec, QC, Canada
| | - Alison E Murray
- Division of Earth and Ecosystem Science, Desert Research Institute, Reno, NV 89512, USA
| | - Hugo Sarmento
- Department of Hydrobiology, Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luiz, 13565-905 São Carlos, SP, Brazil
| | - Silvia G Acinas
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona 08003, Spain
| | - Marcel Babin
- Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche, LOV, F-06230, Villefranche-sur-Mer, Paris, France
- Takuvik International Research Laboratory, Université Laval and CNRS, Québec, QC, Canada
| | - Daniele Iudicone
- Stazione Zoologica Anton Dohrn, Villa Comunale, Naples 80121, Italy
| | - Olivier Jaillon
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, 91057 Paris, France
| | - Eric Karsenti
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
- Institut de Biologie de l'École Normale Supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, PSL Université Paris, 75005 Paris, France
| | - Patrick Wincker
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, 91057 Paris, France
| | - Lee Karp-Boss
- School of Marine Sciences, University of Maine, Orono, ME, USA
| | - Matthew B Sullivan
- Department of Microbiology, Ohio State University, Columbus, OH 43210, USA
- Department of Civil, Environmental and Geodetic Engineering, Ohio State University, Columbus, OH 43210, USA
| | - Chris Bowler
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
- Institut de Biologie de l'École Normale Supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, PSL Université Paris, 75005 Paris, France
| | - Colomban de Vargas
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
- Sorbonne Université, CNRS, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, 29680 Roscoff, France
| | - Damien Eveillard
- Université de Nantes, CNRS UMR 6004, LS2N, F-44000 Nantes, France
- Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans, Paris, France
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Study of Temporal Variations in Species–Environment Association through an Innovative Multivariate Method: MixSTATICO. SUSTAINABILITY 2021. [DOI: 10.3390/su13115924] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The study of biotic and abiotic factors and their interrelationships is essential in the preservation of sustainable marine ecosystems and for understanding the impact that climate change can have on different species. For instance, phytoplankton are extremely vulnerable to environmental changes and thus studying the factors involved is important for the species’ conservation. This work examines the relationship between phytoplankton and environmental parameters of the eastern equatorial Pacific, known as one of the most biologically rich regions in the world. For this purpose, a new multivariate method called MixSTATICO has been developed, allowing mixed-type data structured in two different groups (environment and species) to be related and measured on a space–time scale. The results obtained show how seasons have an impact on species–environment relations, with the most significant association occurring in November and the weakest during the month of May (change of season). The species Lauderia borealis, Chaetoceros didymus and Gyrodinium sp. were not observed in the coastal profiles during the dry season at most stations, while during the rainy season, the species Dactyliosolen antarcticus, Proboscia alata and Skeletonema costatum were not detected. Using MixSTATICO, species vulnerable to specific geographical locations and environmental variations were identified, making it possible to establish biological indicators for this region.
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Shi X, Xiao Y, Liu L, Xie Y, Ma R, Chen J. Transcriptome responses of the dinoflagellate Karenia mikimotoi driven by nitrogen deficiency. HARMFUL ALGAE 2021; 103:101977. [PMID: 33980427 DOI: 10.1016/j.hal.2021.101977] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Revised: 01/13/2021] [Accepted: 01/14/2021] [Indexed: 06/12/2023]
Abstract
The availability of ambient N nutrient is often correlated with the occurrences of harmful algal bloom formed by certain dinoflagellates, making it important to understand how these species might be responding to such conditions. Here, transcriptome sequencing of Karenia mikimotoi was conducted to understand the underlying molecular mechanisms by which this dinoflagellate copes with nitrogen (N) deficiency. Transcriptomic analysis revealed 8802 unigenes (3.56%) that were differentially expressed with ≥ 2-fold change. Under N-depleted conditions, genes involved in glycolysis, fatty acid metabolism, and the tricarboxylic acid (TCA) cycle as well as lipid accumulation were significantly upregulated. The elevated expression of enzymes used in protein degradation and turnover suggests possible metabolic reconfiguration towards accelerated N recycling. Moreover, a significant increase in urea transporter was observed, indicating increased assimilation of organic nitrogen resources as an alternative in N-depleted cultures of K. mikimotoi. The down-regulated glutamate synthase genes were also identified under N deficiency, suggesting suppression of primary amino acid synthesis to save N resource. Taken together, results of this study show enhanced multiple N resource acquisition and reuse of multiple N resources constitute a comprehensive strategy to cope with N deficiency in a dinoflagellate.
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Affiliation(s)
- Xinguo Shi
- Fujian Engineering Research Center for Comprehensive Utilization of Marine Products Waste, Fuzhou University, Fujian 350116, China; Fujian Key Laboratory of Marine Enzyme Engineering, Fuzhou University, Fujian 350116, China.
| | - Yuchun Xiao
- Fujian Key Laboratory of Marine Enzyme Engineering, Fuzhou University, Fujian 350116, China
| | - Lemian Liu
- Fujian Engineering Research Center for Comprehensive Utilization of Marine Products Waste, Fuzhou University, Fujian 350116, China; Fujian Key Laboratory of Marine Enzyme Engineering, Fuzhou University, Fujian 350116, China
| | - Youping Xie
- Fujian Engineering Research Center for Comprehensive Utilization of Marine Products Waste, Fuzhou University, Fujian 350116, China; Fujian Key Laboratory of Marine Enzyme Engineering, Fuzhou University, Fujian 350116, China
| | - Ruijuan Ma
- Fujian Engineering Research Center for Comprehensive Utilization of Marine Products Waste, Fuzhou University, Fujian 350116, China; Fujian Key Laboratory of Marine Enzyme Engineering, Fuzhou University, Fujian 350116, China
| | - Jianfeng Chen
- Fujian Engineering Research Center for Comprehensive Utilization of Marine Products Waste, Fuzhou University, Fujian 350116, China; Fujian Key Laboratory of Marine Enzyme Engineering, Fuzhou University, Fujian 350116, China.
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Jo N, La HS, Kim JH, Kim K, Kim BK, Kim MJ, Son W, Lee SH. Different Biochemical Compositions of Particulate Organic Matter Driven by Major Phytoplankton Communities in the Northwestern Ross Sea. Front Microbiol 2021; 12:623600. [PMID: 33552041 PMCID: PMC7858670 DOI: 10.3389/fmicb.2021.623600] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 01/04/2021] [Indexed: 11/13/2022] Open
Abstract
Marine particulate organic matter (POM) largely derived from phytoplankton is a primary food source for upper trophic consumers. Their biochemical compositions are important for heterotrophs. Especially, essential amino acids (EAAs) in phytoplankton are well known to have impacts on the survival and egg productions of herbivorous zooplankton. To estimate the nutritional quality of POM, the biochemical compositions [biomolecular and amino acid (AA) compositions] of POM were investigated in the northwestern Ross Sea during the late austral summer in 2018. Carbohydrates (CHO) accounted for the highest portion among different biomolecules [CHO, proteins (PRT), and lipids (LIP)] of POM. However, the higher contribution of PRT and lower contribution of CHO were observed in the southern section of our study area compared to those in the northern section. The spatial distribution of total hydrolyzable AAs in POM was considerably influenced by phytoplankton biomass, which indicates that the main source of particulate AA was generated by phytoplankton. Our results showed that the relative contribution of EAA to the total AAs was strongly associated with EAA index (EAAI) for determining protein quality. This result indicates that higher EAA contribution in POM suggests a better protein quality in consistency with high EAAI values. In this study, variations in the biochemical compositions in POM were principally determined by two different bloom-forming taxa (diatoms and Phaeocystis antarctica). The southern region dominated majorly by diatoms was positively correlated with PRT, EAA, and EAAI indicating a good protein quality, while P. antarctica-abundant northern region with higher CHO contribution was negatively correlated with good protein quality factors. Climate-driven environmental changes could alter not only the phytoplankton community but also the physiological conditions of phytoplankton. Our findings could provide a better understanding for future climate-induced changes in the biochemical compositions of phytoplankton and consequently their potential impacts on higher trophic levels.
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Affiliation(s)
- Naeun Jo
- Department of Oceanography, Pusan National University, Busan, South Korea
| | - Hyoung Sul La
- Division of Ocean Sciences, Korea Polar Research Institute, Incheon, South Korea
| | - Jeong-Hoon Kim
- Division of Life Sciences, Korea Polar Research Institute, Incheon, South Korea
| | - Kwanwoo Kim
- Department of Oceanography, Pusan National University, Busan, South Korea
| | - Bo Kyung Kim
- Division of Ocean Sciences, Korea Polar Research Institute, Incheon, South Korea
| | - Myung Joon Kim
- Department of Oceanography, Pusan National University, Busan, South Korea
| | - Wuju Son
- Division of Ocean Sciences, Korea Polar Research Institute, Incheon, South Korea.,Department of Polar Science, University of Science and Technology, Daejeon, South Korea
| | - Sang Heon Lee
- Department of Oceanography, Pusan National University, Busan, South Korea
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Heneghan RF, Everett JD, Sykes P, Batten SD, Edwards M, Takahashi K, Suthers IM, Blanchard JL, Richardson AJ. A functional size-spectrum model of the global marine ecosystem that resolves zooplankton composition. Ecol Modell 2020. [DOI: 10.1016/j.ecolmodel.2020.109265] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Glyphosate-Based Herbicide Toxicophenomics in Marine Diatoms: Impacts on Primary Production and Physiological Fitness. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10217391] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Glyphosate is the main active component of the commercial formulation Roundup®, the most widely used chemical herbicide worldwide. However, its potential high toxicity to the environment and throughout trophic webs has come under increasing scrutiny. The present study aims to investigate the application of bio-optical techniques and their correlation to physiological and biochemical processes, including primary productivity, oxidative stress, energy balance, and alterations in pigment and lipid composition in Phaeodactylum tricornutum, a representative species of marine diatoms, using the case study of its response to the herbicide glyphosate-based Roundup® formulation, at environmentally relevant concentrations. Cultures were exposed to the herbicide formulation representing effective glyphosate concentrations of 0, 10, 50, 100, 250, and 500 μg L−1. Results showed that high concentrations decreased cell density; furthermore, the inhibition of photosynthetic activity was not only caused by the impairment of electron transport in the thylakoids, but also by a decrease of antioxidant capacity and increased lipid peroxidation. Nevertheless, concentrations of one of the plastidial marker fatty acids had a positive correlation with the highest concentration as well as an increase in total protein. Cell energy allocation also increased with concentration, relative to control and the lowest concentration, although culture growth was inhibited. Pigment composition and fatty acid profiles proved to be efficient biomarkers for the highest glyphosate-based herbicide concentrations, while bio-optical data separated controls from intermediate concentrations and high concentrations.
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40
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Climatic and Anthropogenic Impacts on Environmental Conditions and Phytoplankton Community in the Gulf of Trieste (Northern Adriatic Sea). WATER 2020. [DOI: 10.3390/w12092652] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
During the last century, human activities have exerted an increasing pressure on coastal ecosystems, primarily inducing their eutrophication, with a more recent partial mitigation of this phenomenon where improvements of environmental management practices were adopted. However, a reanalysis of the pressures on coastal zones and surrounding drainage basins is needed because of the alterations induced nowadays by the climate changes. A comparative analysis of long-term oceanographic and environmental data series (1986–2018) was performed, in order to highlight the effects of anthropogenic and climatic disturbances on the phytoplankton community in the Gulf of Trieste (GoT). After the 1980s, the decline in phytoplankton abundance was matched to increasing periods of low runoff, an overall deficit of the precipitation and to a decrease in phosphate availability in the coastal waters (−0.003 µmol L−1 yr−1), even in the presence of large riverine inputs of nitrogen and silicates. This trend of oligotrophication was reversed in the 2010s by the beginning of a new and unexpected phase of climatic instability, which also caused changes of the composition and seasonal cycle of the phytoplankton community. Beyond the management of nutrient loads, it was shown that climatic drivers such as seawater warming, precipitation and wind regime affect both nutrient balance and phytoplankton community in this coastal zone.
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Phagocytosis activity of three sulfated polysaccharides purified from a marine diatom cultured in a semi-continuous system. Int J Biol Macromol 2020; 155:951-960. [PMID: 31712151 DOI: 10.1016/j.ijbiomac.2019.11.054] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Revised: 10/22/2019] [Accepted: 11/07/2019] [Indexed: 11/23/2022]
Abstract
An efficient process has been developed for bioactive polysaccharide production and purification from a local diatom isolate, Halamphora sp. AQ4. First, a semi-continuous system with fixed harvesting frequency was employed to cultivate AQ4 for the production of cell mass and polysaccharides for more than 285 days with a high yield of biomass. Six cultivation sets are performed according to different harvesting volumes per 3 days with or without Na2CO3 supplement. The addition of Na2CO3 increases both cell mass and polysaccharide production. Furthermore, three different sulfated polysaccharides (PK1~PK3) were purified from the freshly-grown AQ4 diatoms following anion-exchange chromatography. Among them, polysaccharide PK3 not only has a high content of fucose and uronic acid, but also has a strong activity to stimulate murine macrophage cells and increase their phagocytosis rate up to 170%. This study demonstrates that diatom AQ4 is an important bioresource for the production of bioactive polysaccharides.
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Genzer JL, Kamalanathan M, Bretherton L, Hillhouse J, Xu C, Santschi PH, Quigg A. Diatom aggregation when exposed to crude oil and chemical dispersant: Potential impacts of ocean acidification. PLoS One 2020; 15:e0235473. [PMID: 32634146 PMCID: PMC7340286 DOI: 10.1371/journal.pone.0235473] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 06/17/2020] [Indexed: 01/14/2023] Open
Abstract
Diatoms play a key role in the marine carbon cycle with their high primary productivity and release of exudates such as extracellular polymeric substances (EPS) and transparent exopolymeric particles (TEP). These exudates contribute to aggregates (marine snow) that rapidly transport organic material to the seafloor, potentially capturing contaminants like petroleum components. Ocean acidification (OA) impacts marine organisms, especially those that utilize inorganic carbon for photosynthesis and EPS production. Here we investigated the response of the diatom Thalassiosira pseudonana grown to present day and future ocean conditions in the presence of a water accommodated fraction (WAF and OAWAF) of oil and a diluted chemically enhanced WAF (DCEWAF and OADCEWAF). T. pseudonana responded to WAF/DCEWAF but not OA and no multiplicative effect of the two factors (i.e., OA and oil/dispersant) was observed. T. pseudonana released more colloidal EPS (< 0.7 μm to > 3 kDa) in the presence of WAF/DCEWAF/OAWAF/OADCEWAF than in the corresponding Controls. Colloidal EPS and particulate EPS in the oil/dispersant treatments have higher protein-to-carbohydrate ratios than those in the control treatments, and thus are likely stickier and have a greater potential to form aggregates of marine oil snow. More TEP was produced in response to WAF than in Controls; OA did not influence its production. Polyaromatic hydrocarbon (PAH) concentrations and distributions were significantly impacted by the presence of dispersants but not OA. PAHs especially Phenanthrenes, Anthracenes, Chrysenes, Fluorenes, Fluoranthenes, Pyrenes, Dibenzothiophenes and 1-Methylphenanthrene show major variations in the aggregate and surrounding seawater fraction of oil and oil plus dispersant treatments. Studies like this add to the current knowledge of the combined effects of aggregation, marine snow formation, and the potential impacts of oil spills under ocean acidification scenarios.
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Affiliation(s)
- Jennifer L. Genzer
- Department of Marine Biology, Texas A&M University at Galveston, Galveston, Texas, United States of America
| | - Manoj Kamalanathan
- Department of Marine Biology, Texas A&M University at Galveston, Galveston, Texas, United States of America
| | - Laura Bretherton
- Department of Marine Biology, Texas A&M University at Galveston, Galveston, Texas, United States of America
- Department of Oceanography, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Jessica Hillhouse
- Department of Marine Biology, Texas A&M University at Galveston, Galveston, Texas, United States of America
| | - Chen Xu
- Department of Marine Science, Texas A&M University at Galveston, Galveston, Texas, United States of America
| | - Peter H. Santschi
- Department of Marine Science, Texas A&M University at Galveston, Galveston, Texas, United States of America
| | - Antonietta Quigg
- Department of Marine Biology, Texas A&M University at Galveston, Galveston, Texas, United States of America
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Rapid and Positive Effect of Bicarbonate Addition on Growth and Photosynthetic Efficiency of the Green Microalgae Chlorella Sorokiniana (Chlorophyta, Trebouxiophyceae). APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10134515] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Bicarbonate ions are the primary source of inorganic carbon for autotrophic organisms living in aquatic environments. In the present study, we evaluated the short-term (hours) effects of sodium bicarbonate (NaHCO3) addition on the growth and photosynthetic efficiency of the green algae Chlorella sorokiniana (211/8k). Bicarbonate was added to nonaxenic cultures at concentrations of 1, 2, and 3 g L−1 leading to a significant increase in biomass especially at the highest salt concentration (3 g L−1) and also showing a bactericidal and bacteriostatic effect that helped to keep a reduced microbial load in the algal culture. Furthermore, bicarbonate stimulated the increase in cellular content of chlorophyll a, improving the photosynthetic performance of cells. Since microalgae of genus Chlorella spp. show great industrial potential for the production of biofuels, nutraceuticals, cosmetics, health, and dietary supplements and the use of bicarbonate as a source of inorganic carbon led to short-term responses in Chlorella sorokiniana, this method represents a valid alternative not only to the insufflation of carbon dioxide for the intensive cultures but also for the production of potentially bioactive compounds in a short period.
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Bidleman TF, Andersson A, Haglund P, Tysklind M. Will Climate Change Influence Production and Environmental Pathways of Halogenated Natural Products? ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:6468-6485. [PMID: 32364720 DOI: 10.1021/acs.est.9b07709] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Thousands of halogenated natural products (HNPs) pervade the terrestrial and marine environment. HNPs are generated by biotic and abiotic processes and range in complexity from low molecular mass natural halocarbons (nHCs, mostly halomethanes and haloethanes) to compounds of higher molecular mass which often contain oxygen and/or nitrogen atoms in addition to halogens (hHNPs). nHCs have a key role in regulating tropospheric and stratospheric ozone, while some hHNPs bioaccumulate and have toxic properties similar those of anthropogenic-persistent organic pollutants (POPs). Both chemical classes have common sources: biosynthesis by marine bacteria, phytoplankton, macroalgae, and some invertebrate animals, and both may be similarly impacted by alteration of production and transport pathways in a changing climate. The nHCs scientific community is advanced in investigating sources, atmospheric and oceanic transport, and forecasting climate change impacts through modeling. By contrast, these activities are nascent or nonexistent for hHNPs. The goals of this paper are to (1) review production, sources, distribution, and transport pathways of nHCs and hHNPs through water and air, pointing out areas of commonality, (2) by analogy to nHCs, argue that climate change may alter these factors for hHNPs, and (3) suggest steps to improve linkage between nHCs and hHNPs science to better understand and predict climate change impacts.
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Affiliation(s)
- Terry F Bidleman
- Department of Chemistry, Umeå University (UmU), SE-901 87 Umeå, Sweden
| | - Agneta Andersson
- Department of Ecology & Environmental Science, UmU, SE-901 87 Umeå, Sweden
- Umeå Marine Sciences Centre, UmU, SE-905 71 Hörnefors, Sweden
| | - Peter Haglund
- Department of Chemistry, Umeå University (UmU), SE-901 87 Umeå, Sweden
| | - Mats Tysklind
- Department of Chemistry, Umeå University (UmU), SE-901 87 Umeå, Sweden
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Cabrerizo MJ, Álvarez-Manzaneda MI, León-Palmero E, Guerrero-Jiménez G, de Senerpont Domis LN, Teurlincx S, González-Olalla JM. Warming and CO 2 effects under oligotrophication on temperate phytoplankton communities. WATER RESEARCH 2020; 173:115579. [PMID: 32059127 DOI: 10.1016/j.watres.2020.115579] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Revised: 01/18/2020] [Accepted: 02/01/2020] [Indexed: 06/10/2023]
Abstract
Eutrophication, global warming, and rising carbon dioxide (CO2) levels are the three most prevalent pressures impacting the biosphere. Despite their individual effects are well-known, it remains untested how oligotrophication (i.e. nutrients reduction) can alter the planktonic community responses to warming and elevated CO2 levels. Here, we performed an indoor mesocosm experiment to investigate the warming × CO2 interaction under a nutrient reduction scenario (40%) mediated by an in-lake management strategy (i.e. addition of a commercial solid-phase phosphorus sorbent -Phoslock®) on a natural freshwater plankton community. Biomass production increased under warming × CO2 relative to present-day conditions; however, a Phoslock®-mediated oligotrophication reduced such values by 30-70%. Conversely, the warming × CO2 × oligotrophication interaction stimulated the photosynthesis by 20% compared to ambient nutrient conditions, and matched with higher resource use efficiency (RUE) and nutrient demand. Surprisingly, at a group level, we found that the multi-stressors scenario increased the photosynthesis in eukaryotes by 25%, but greatly impaired in cyanobacteria (ca. -25%). This higher cyanobacterial sensitivity was coupled with a reduced light harvesting efficiency and compensation point. Since Phoslock®-induced oligotrophication unmasked a strong negative warming × CO2 effect on cyanobacteria, it becomes crucial to understand how the interplay between climate change and nutrient abatement actions may alter the, ecosystems functioning. With an integrative understanding of these processes, policy makers will design more appropriate management strategies to improve the ecological status of aquatic ecosystems without compromising their ecological attributes and functioning.
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Affiliation(s)
- Marco J Cabrerizo
- Department of Ecology, Faculty of Sciences, University of Granada, Campus Fuentenueva, s/n, 18071, Granada, Spain; Centro de Investigación Mariña da Universidade de Vigo (CIM-UVigo), Illa de Toralla s/n, Vigo, 36331, Spain; Department of Ecology and Animal Biology, Faculty of Marine Sciences, University of Vigo, Campus Lagoas Marcosende, Vigo, 36310, Spain.
| | | | - Elizabeth León-Palmero
- Universitary Institute of Water Research, University of Granada, C/ Ramón y Cajal, P. O. 4, 18071, Granada, Spain.
| | - Gerardo Guerrero-Jiménez
- Universitary Institute of Water Research, University of Granada, C/ Ramón y Cajal, P. O. 4, 18071, Granada, Spain.
| | - Lisette N de Senerpont Domis
- Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg, 10, 6708 PB, Wageningen, the Netherlands; Aquatic Ecology and Water Quality Management group, Wageningen University, Wageningen, the Netherlands.
| | - Sven Teurlincx
- Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg, 10, 6708 PB, Wageningen, the Netherlands.
| | - Juan M González-Olalla
- Department of Ecology, Faculty of Sciences, University of Granada, Campus Fuentenueva, s/n, 18071, Granada, Spain.
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Small phytoplankton dominate western North Atlantic biomass. ISME JOURNAL 2020; 14:1663-1674. [PMID: 32231247 PMCID: PMC7305139 DOI: 10.1038/s41396-020-0636-0] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/20/2019] [Revised: 03/06/2020] [Accepted: 03/16/2020] [Indexed: 02/02/2023]
Abstract
The North Atlantic phytoplankton spring bloom is the pinnacle in an annual cycle that is driven by physical, chemical, and biological seasonality. Despite its important contributions to the global carbon cycle, transitions in plankton community composition between the winter and spring have been scarcely examined in the North Atlantic. Phytoplankton composition in early winter was compared with latitudinal transects that captured the subsequent spring bloom climax. Amplicon sequence variants (ASVs), imaging flow cytometry, and flow-cytometry provided a synoptic view of phytoplankton diversity. Phytoplankton communities were not uniform across the sites studied, but rather mapped with apparent fidelity onto subpolar- and subtropical-influenced water masses of the North Atlantic. At most stations, cells < 20-µm diameter were the main contributors to phytoplankton biomass. Winter phytoplankton communities were dominated by cyanobacteria and pico-phytoeukaryotes. These transitioned to more diverse and dynamic spring communities in which pico- and nano-phytoeukaryotes, including many prasinophyte algae, dominated. Diatoms, which are often assumed to be the dominant phytoplankton in blooms, were contributors but not the major component of biomass. We show that diverse, small phytoplankton taxa are unexpectedly common in the western North Atlantic and that regional influences play a large role in modulating community transitions during the seasonal progression of blooms.
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Yue L, Kong W, Ji M, Liu J, Morgan-Kiss RM. Community response of microbial primary producers to salinity is primarily driven by nutrients in lakes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 696:134001. [PMID: 31454602 DOI: 10.1016/j.scitotenv.2019.134001] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Revised: 08/16/2019] [Accepted: 08/18/2019] [Indexed: 06/10/2023]
Abstract
Higher microbial diversity was frequently observed in saline than fresh waters, but the underlying mechanisms remains unknown, particularly in microbial primary producers (MPP). MPP abundance and activity are notably constrained by high salinity, but facilitated by high nutrients. It remains to be ascertained whether and how nutrients regulate the salinity constraints on MPP abundance and community structure. Here we investigated the impact of nutrients on salinity constraints on MPP abundance and diversity in undisturbed lakes with a wide salinity range on the Tibetan Plateau. MPP community was explored using quantitative PCR, terminal restriction fragment length polymorphism and sequencing of cloning libraries targeting form IC cbbL gene. The MPP community structure was sorted by salinity into freshwater (salinity<1‰), saline (1‰ < salinity<29‰) and hypersaline (salinity>29‰) lakes. Furthermore, while MPP abundance, diversity and richness were significantly constrained with increasing salinity, these constraints were mitigated by enhancing total organic carbon (TOC) and total nitrogen (TN) contents in freshwater and saline lakes. In contrast, the MPP diversity increased significantly with the salinity in hypersaline lakes, due to the mitigation of enhancing TOC and TN contents and salt-tolerant MPP taxa. The mitigating effect of nutrients was more pronounced in saline than in freshwater and hypersaline lakes. The MPP compositions varied along salinity, with Betaproteobacteria dominating both the freshwater and saline lakes and Gammaproteobacteria dominating the hypersaline lakes. We concluded that high nutrients could mitigate the salinity constraining effects on MPP abundance, community richness and diversity. Our findings offer a novel insight into the salinity effects on primary producers and highlight the interactive effects of salinity and nutrients on MPP in lakes. These findings can be used as a baseline to illuminate the effects of increased anthropogenic activities altering nutrient dynamics on the global hydrological cycle and the subsequent responses thereof by MPP communities.
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Affiliation(s)
- Linyan Yue
- Key Laboratory of Alpine Ecology (LAE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences (CAS), Beijing 100101, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100039, China
| | - Weidong Kong
- Key Laboratory of Alpine Ecology (LAE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences (CAS), Beijing 100101, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100039, China; CAS Center for Excellence in Tibetan Plateau Earth Sciences, Chinese Academy of Sciences, Beijing 100101, China.
| | - Mukan Ji
- Key Laboratory of Alpine Ecology (LAE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences (CAS), Beijing 100101, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100039, China
| | - Jinbo Liu
- Department of Hepatobiliary Surgery, The Affiliated Hospital of Southwest Medical University, Luzhou 646000, China
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Johnson JE. From minerals to metabolisms: Evidence for life before oxygen from the geological record. Free Radic Biol Med 2019; 140:126-137. [PMID: 30743045 DOI: 10.1016/j.freeradbiomed.2019.01.047] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Revised: 12/18/2018] [Accepted: 01/31/2019] [Indexed: 10/27/2022]
Affiliation(s)
- Jena E Johnson
- Dept. of Earth and Environmental Sciences, University of Michigan, 1100 N. University Ave, Ann Arbor, MI, 48109, USA.
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Qu P, Fu FX, Kling JD, Huh M, Wang X, Hutchins DA. Distinct Responses of the Nitrogen-Fixing Marine Cyanobacterium Trichodesmium to a Thermally Variable Environment as a Function of Phosphorus Availability. Front Microbiol 2019; 10:1282. [PMID: 31244804 PMCID: PMC6579863 DOI: 10.3389/fmicb.2019.01282] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Accepted: 05/23/2019] [Indexed: 12/05/2022] Open
Abstract
Surface temperature in the ocean is projected to be elevated and more variable in the future, which will interact with other environmental changes like reduced nutrient supplies. To explore these multiple stressor relationships, we tested the influence of thermal variation on the key marine diazotrophic cyanobacterium Trichodesmium erythraeum GBRTRLI101 as a function of the limiting nutrient phosphorus (P). Two constant temperature treatments represented current winter (22°C) and summer (30°C) mean values. Three variable temperature treatments fluctuated around the constant control values: Mean 22°C, either ± 2°C or ± 4°C; and mean 30°C ± 2°C. Each thermal treatment was grown under both P-replete (10 μmol/L) and P-limiting conditions (0.2 μmol/L). Effects of thermal variability on Trichodesmium were mainly found in the two winter variable temperature treatments (22°C ± 2°C or ± 4°C). P availability affected growth and physiology in all treatments and had significant interactions with temperature. P-replete cultures had higher growth and nitrogen and carbon fixation rates in the 22°C constant control, than in the corresponding variable treatments. However, physiological rates were not different in the P-replete constant and variable treatments at 30°C. In contrast, in P-limited cultures an advantage of constant temperature over variable temperature was not apparent. Phosphorus use efficiencies (PUE, mol N or C fixed h-1 mol cellular P-1) for nitrogen and carbon fixation were significantly elevated under P-limited conditions, and increased with temperature from 22 to 30°C, implying a potential advantage in a future warmer, P-limited environment. Taken together, these results imply that future increasing temperature and greater thermal variability could have significant feedback interactions with the projected intensification of P-limitation of marine N2-fixing cyanobacteria.
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Affiliation(s)
- Pingping Qu
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, United States
| | - Fei-Xue Fu
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, United States
| | - Joshua D. Kling
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, United States
| | - Megan Huh
- Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, United States
| | - Xinwei Wang
- School of Life Sciences, Xiamen University, Xiamen, China
| | - David A. Hutchins
- Department of Biological Sciences, University of Southern California, Los Angeles, CA, United States
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The Relationship between POC Export Efficiency and Primary Production: Opposite on the Shelf and Basin of the Northern South China Sea. SUSTAINABILITY 2018. [DOI: 10.3390/su10103634] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Accurate estimation of particulate organic carbon (POC) export efficiency in the euphotic layer is essential to understand the efficiency of the ocean’s biological carbon pump, but field measurements are difficult to conduct and data are sparse. In this study, we investigated the relationship between POC sinking export efficiency and ocean net primary production (NPP) in the euphotic layer of the northern South China Sea (NSCS), with the help of high spatiotemporal coverage satellite-derived NPP. Annual mean POC export efficiency in euphotic zone is 34% for the shelf areas and 24% for the basin of the NSCS in the context of satellite-derived 16-day-composited NPP. Similar to what is generally observed in the global ocean, the POC export efficiency on the shelf areas appears to be strengthened with the increase of NPP. However, in the basin areas, the opposite relationship is observed. That is, the POC export efficiency significantly decreases with the increase of NPP. Seasonal decoupling between NPP and POC export, phytoplankton size structure, grazing by zooplankton, and dissolved organic carbon export might account for the observed negative relationship between the POC export efficiency and NPP in the euphotic layer of basin region. System comparison between shelf and basin would be helpful to promote understanding of the regulation mechanism of POC export in the tropical marginal seas.
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