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Nouraei S, Mia MS, Liu H, Turner NC, Yan G. Genome-wide association study of drought tolerance in wheat (Triticum aestivum L.) identifies SNP markers and candidate genes. Mol Genet Genomics 2024; 299:22. [PMID: 38430317 PMCID: PMC10908643 DOI: 10.1007/s00438-024-02104-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Accepted: 01/11/2024] [Indexed: 03/03/2024]
Abstract
Drought stress poses a severe threat to global wheat production, necessitating an in-depth exploration of the genetic basis for drought tolerance associated traits. This study employed a 90 K SNP array to conduct a genome-wide association analysis, unravelling genetic determinants of key traits related to drought tolerance in wheat, namely plant height, root length, and root and shoot dry weight. Using the mixed linear model (MLM) method on 125 wheat accessions subjected to both well-watered and drought stress treatments, we identified 53 SNPs significantly associated with stress susceptibility (SSI) and tolerance indices (STI) for the targeted traits. Notably, chromosomes 2A and 3B stood out with ten and nine associated markers, respectively. Across 17 chromosomes, 44 unique candidate genes were pinpointed, predominantly located on the distal ends of 1A, 1B, 1D, 2A, 3A, 3B, 4A, 6A, 6B, 7A, 7B, and 7D chromosomes. These genes, implicated in diverse functions related to plant growth, development, and stress responses, offer a rich resource for future investigation. A clustering pattern emerged, notably with seven genes associated with SSI for plant height and four genes linked to both STI of plant height and shoot dry weight, converging on specific regions of chromosome arms of 2AS and 3BL. Additionally, shared genes encoding polygalacturonase, auxilin-related protein 1, peptide deformylase, and receptor-like kinase underscored the interconnectedness between plant height and shoot dry weight. In conclusion, our findings provide insights into the molecular mechanisms governing wheat drought tolerance, identifying promising genomic loci for further exploration and crop improvement strategies.
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Affiliation(s)
- Sina Nouraei
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA, 6009, Australia
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6009, Australia
| | - Md Sultan Mia
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6009, Australia
- Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA, 6151, Australia
| | - Hui Liu
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA, 6009, Australia.
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6009, Australia.
| | - Neil C Turner
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA, 6009, Australia
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6009, Australia
| | - Guijun Yan
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA, 6009, Australia.
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6009, Australia.
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Tavares CJ, Ribeiro Junior WQ, Ramos MLG, Pereira LF, Muller O, Casari RADCN, de Sousa CAF, da Silva AR. Water Stress Alters Physiological, Spectral, and Agronomic Indexes of Wheat Genotypes. PLANTS (BASEL, SWITZERLAND) 2023; 12:3571. [PMID: 37896034 PMCID: PMC10609785 DOI: 10.3390/plants12203571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 10/07/2023] [Accepted: 10/12/2023] [Indexed: 10/29/2023]
Abstract
Selecting drought-tolerant and more water-efficient wheat genotypes is a research priority, specifically in regions with irregular rainfall or areas where climate change is expected to result in reduced water availability. The objective of this work was to use high-throughput measurements with morphophysiological traits to characterize wheat genotypes in relation to water stress. Field experiments were conducted from May to September 2018 and 2019, using a sprinkler bar irrigation system to control water availability to eighteen wheat genotypes: BRS 254; BRS 264; CPAC 01019; CPAC 01047; CPAC 07258; CPAC 08318; CPAC 9110; BRS 394 (irrigated biotypes), and Aliança; BR 18_Terena; BRS 404; MGS Brilhante; PF 020037; PF 020062; PF 120337; PF 100368; PF 080492; and TBIO Sintonia (rainfed biotypes). The water regimes varied from 22 to 100% of the crop evapotranspiration replacement. Water stress negatively affected gas exchange, vegetation indices, and grain yield. High throughput variables TCARI, NDVI, OSAVI, SAVI, PRI, NDRE, and GNDVI had higher yield and morphophysiological measurement correlations. The drought resistance index indicated that genotypes Aliança, BRS 254, BRS 404, CPAC 01019, PF 020062, and PF 080492 were more drought tolerant.
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Affiliation(s)
- Cássio Jardim Tavares
- Federal Institute Goiano, Campus Cristalina (IF Goiano), Cristalina 73850-000, GO, Brazil;
| | | | | | | | - Onno Muller
- Institute for Bio-and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, 52428 Jülich, Germany;
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3
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Bal SK, Sattar A, Nidhi, Chandran MAS, Subba Rao AVM, Manikandan N, Banerjee S, Choudhary JL, More VG, Singh CB, Sandhu SS, Singh VK. Critical weather limits for paddy rice under diverse ecosystems of India. FRONTIERS IN PLANT SCIENCE 2023; 14:1226064. [PMID: 37621886 PMCID: PMC10445142 DOI: 10.3389/fpls.2023.1226064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2023] [Accepted: 07/20/2023] [Indexed: 08/26/2023]
Abstract
Rice yields are largely influenced by variability in weather. Here, we demonstrate the effect of weather variables viz., maximum and minimum temperatures, rainfall, morning and evening relative humidity, bright sunshine hours on the yield of rice cv. Swarna, grown across five rice ecologies of India through field experiments during kharif (wet) season (Jun-Sept.). Critical thresholds of weather elements were identified for achieving above average, average and below average yield for each ecology. The investigation could determine how different weather elements individually and collectively affect rice yield in different rice ecosystems of India. While a sudden increase in minimum temperature by 8-10 °C (> 30 °C) during reproductive period resulted in 40-50 per cent yield reduction at Mohanpur, a sudden decrease (< 20 °C) caused yield decline at Dapoli. The higher yields may be attributed to a significant difference in bright sunshine hours between reproductive phases of above-average and below-average yield years (ranging from 2.8 to 7.8 hours during P5 stages and 1.7 to 5.1 during P4 stages). Rice cultivar Swarna performed differently at various sowing dates in a location as well as across locations (6650 kg ha-1 at Dapoli to 1101 kg ha-1 at Samastipur). It was also found that across all locations, the above average yield could be associated with higher range of maximum temperature compared to that of below average yield. Principal component analysis explained 77 per cent of cumulative variance among the variables at first growth stage, whereas 70 per cent at second growth stage followed by 74 per cent and 66 per cent at subsequent growth stages. We found that coastal locations, in contrast to inland ones, could maximize the yield potential of the cultivar Swarna, due to the longer duration of days between panicle initiation to physiological maturity. We anticipate that the location-specific thresholds of weather factors will encourage rice production techniques that are climate resilient.
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Affiliation(s)
- Santanu Kumar Bal
- All India Coordinated Research Project on Agrometeorology, Indian Council of Agricultural Research (ICAR)-Central Research Institute for Dryland Agriculture, Santoshnagar, Hyderabad, India
| | - Abdus Sattar
- Dr. Rajendra Prasad Central Agricultural University, Pusa, Samastipur, Bihar, India
| | - Nidhi
- Dr. Rajendra Prasad Central Agricultural University, Pusa, Samastipur, Bihar, India
| | - Malamal Alickal Sarath Chandran
- All India Coordinated Research Project on Agrometeorology, Indian Council of Agricultural Research (ICAR)-Central Research Institute for Dryland Agriculture, Santoshnagar, Hyderabad, India
| | - Abburi Venkata M. Subba Rao
- All India Coordinated Research Project on Agrometeorology, Indian Council of Agricultural Research (ICAR)-Central Research Institute for Dryland Agriculture, Santoshnagar, Hyderabad, India
| | - Narayanan Manikandan
- All India Coordinated Research Project on Agrometeorology, Indian Council of Agricultural Research (ICAR)-Central Research Institute for Dryland Agriculture, Santoshnagar, Hyderabad, India
| | - Saon Banerjee
- Department of Agricultural Meteorology and Physics, Bidhan Chandra Krishi Viswavidyalaya (BCKV), Mohanpur, West Bengal, India
| | - Jawahar L. Choudhary
- Department of Agrometeorology, Indira Gandhi Krishi Vishwavidyalaya (IGKV), Raipur, Chhattisgarh, India
| | - Vijay G. More
- Department of Agronomy, Dr. Balasaheb Sawant Konkan Krishi Vidyapeeth, Dapoli, Maharashtra, India
| | - Chandra B. Singh
- Department of Agronomy, Chandrashekhar Azad University of Agriculture and Technology, Kanpur, Uttar Pradesh, India
| | - Sandeep S. Sandhu
- Department of Agricultural Meteorology and Climate Change, Punjab Agricultural University (PAU), Ludhiana, Punjab, India
| | - Vinod Kumar Singh
- All India Coordinated Research Project on Agrometeorology, Indian Council of Agricultural Research (ICAR)-Central Research Institute for Dryland Agriculture, Santoshnagar, Hyderabad, India
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4
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Li J, Zhao M, Liu L, Guo X, Pei Y, Wang C, Song X. Exogenous Sorbitol Application Confers Drought Tolerance to Maize Seedlings through Up-Regulating Antioxidant System and Endogenous Sorbitol Biosynthesis. PLANTS (BASEL, SWITZERLAND) 2023; 12:2456. [PMID: 37447017 DOI: 10.3390/plants12132456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Revised: 06/20/2023] [Accepted: 06/21/2023] [Indexed: 07/15/2023]
Abstract
This study aims to explore the impacts of exogenous sorbitol on maize seedlings under polyethylene glycol (PEG)-simulated drought stress. Six treatments were set: normal condition (CK), PEG (P), 10 mM sorbitol (10S), PEG plus 10 mM sorbitol (10SP), 100 mM sorbitol (100S) and PEG plus 100 mM sorbitol (100SP). Maize seedlings' growth under PEG-simulated drought stress was significantly inhibited and exogenous sorbitol largely alleviated this growth inhibition. The seedlings under 10SP treatment grew much better than those under P, 100S and 100SP treatments and no significant difference in growth parameters was observed between the control and 10S treatment. The seedlings treated with 10SP had higher contents of soluble sugar, soluble protein, proline, ascorbic acid (AsA), reduced glutathione (GSH), sorbitol and relative water content, higher activities of antioxidant enzymes and aldose reductase, but lower contents of malondialdehyde (MDA), H2O2 and relative electrical conductivity than those treated with P, 100S and 100SP. qRT-PCR analysis showed that the transcript levels of genes encoding putative aldose reductase (AR) under P treatment were significantly up-regulated in sorbitol-applied treatments. Taken together, the results demonstrated that exogenous sorbitol application conferred drought tolerance to maize seedlings by up-regulating the expression levels of AR-related genes to enhance the accumulation of intracellular osmotic substances such as sorbitol and improve antioxidant systems to tone down the damage caused by drought stress.
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Affiliation(s)
- Jun Li
- College of Agronomy, Qingdao Agricultural University, Qingdao 266109, China
| | - Meiai Zhao
- College of Life Sciences, Qingdao Agricultural University, Qingdao 266109, China
| | - Ligong Liu
- Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Xinmei Guo
- College of Agronomy, Qingdao Agricultural University, Qingdao 266109, China
| | - Yuhe Pei
- College of Agronomy, Qingdao Agricultural University, Qingdao 266109, China
| | - Chunxiao Wang
- College of Agronomy, Qingdao Agricultural University, Qingdao 266109, China
| | - Xiyun Song
- College of Agronomy, Qingdao Agricultural University, Qingdao 266109, China
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5
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Kalamartzis I, Papakaloudis P, Dordas C. Basil ( Ocimum basilicum) Landraces Can Be Used in a Water-Limited Environment. PLANTS (BASEL, SWITZERLAND) 2023; 12:2425. [PMID: 37446986 DOI: 10.3390/plants12132425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 06/18/2023] [Accepted: 06/19/2023] [Indexed: 07/15/2023]
Abstract
Basil (Ocimum basilicum L.) is a member of the Labiatae family and is one of the most widely consumed aromatic and medicinal plants in many countries due to its numerous properties and uses. The objective of the study was to determine whether landraces are better adapted to water-limited environments compared to commercial cultivars. Irrigation levels and genotypes affected plant height and leaf area index, with 25% and 33% higher values observed under complete irrigation, respectively. Additionally, limited water availability resulted in a 20% reduction in dry matter yield and a 21% reduction in essential oil yield over the three years in all of the genotypes tested, specifically in the lower irrigation treatment (d40), compared to the control treatment (d100). The landraces that performed the best under limited water supply were Athos white spike (AWS) and Gigas white spike (GWS), indicating their suitability for environments with limited water resources. The results demonstrate that there are landraces that can be utilized in dryland climates with appropriate water management, enabling water conservation and utilization of fields in water-scarce areas for irrigation purposes.
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Affiliation(s)
- Iakovos Kalamartzis
- Laboratory of Agronomy, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - Paschalis Papakaloudis
- Laboratory of Agronomy, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - Christos Dordas
- Laboratory of Agronomy, School of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
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Ali I, Anwar S, Ali A, Ullah Z, Binjawhar DN, Sher H, Abdel-Hameed UK, Khan MA, Majeed K, Jaremko M. Biochemical and phenological characterization of diverse wheats and their association with drought tolerance genes. BMC PLANT BIOLOGY 2023; 23:326. [PMID: 37331960 DOI: 10.1186/s12870-023-04278-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Accepted: 05/11/2023] [Indexed: 06/20/2023]
Abstract
Drought is one of the most important wheat production limiting factor, and can lead to severe yield losses. This study was designed to examine the effect of drought stress on wheat physiology and morphology under three different field capacities (FC) viz. 80% (control), 50% (moderate) and 30% (severe drought stress) in a diverse collection of wheat germplasm including cultivars, landraces, synthetic hexaploid and their derivatives. Traits like grain weight, thousand grain weight and biomass were reduced by 38.23%, 18.91% and 26.47% respectively at 30% FC, whereas the reduction rate for these traits at 50% FC were 19.57%, 8.88% and 18.68%. In principal component analysis (PCA), the first two components PC1 and PC2 accounted for 58.63% of the total variation and separated the cultivars and landraces from synthetic-based germplasm. Landraces showed wide range of phenotypic variations at 30% FC compared to synthetic-based germplasm and improved cultivars. However, least reduction in grain weight was observed in improved cultivars which indicated the progress in developing drought resilient cultivars. Allelic variations of the drought-related genes including TaSnRK2.9-5A, TaLTPs-11, TaLTPs-12, TaSAP-7B-, TaPPH-13, Dreb-B1 and 1fehw3 were significantly associated with the phenological traits under drought stress in all 91 wheats including 40 landraces, 9 varieties, 34 synthetic hexaploids and 8 synthetic derivatives. The favorable haplotypes of 1fehw3, Dreb-B1, TaLTPs-11 and TaLTPs-12 increased grain weight, and biomass. Our results iterated the fact that landraces could be promising source to deploy drought adaptability in wheat breeding. The study further identified drought tolerant wheat genetic resources across various backgrounds and identified favourable haplotypes of water-saving genes which should be considered to develop drought tolerant varieties.
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Affiliation(s)
- Iftikhar Ali
- Center for Plant Science and Biodiversity, University of Swat, Charbagh Swat, 19120, Pakistan.
- Department of Genetics and Development, Columbia University Irving Medical Center, New York, NY, 10032, USA.
- School of Life Sciences & Center of Novel Biomaterials, The Chinese University of Hong Kong, Hong Kong, 999077, Hong Kong.
| | - Saeed Anwar
- Center for Plant Science and Biodiversity, University of Swat, Charbagh Swat, 19120, Pakistan
| | - Ahmad Ali
- Center for Plant Science and Biodiversity, University of Swat, Charbagh Swat, 19120, Pakistan.
| | - Zahid Ullah
- Center for Plant Science and Biodiversity, University of Swat, Charbagh Swat, 19120, Pakistan
| | - Dalal Nasser Binjawhar
- Department of Chemistry, College of Science, Princess Nourah Bint Abdulrahman University, Riyadh, 11671, Saudi Arabia.
| | - Hassan Sher
- Center for Plant Science and Biodiversity, University of Swat, Charbagh Swat, 19120, Pakistan
| | - Usama K Abdel-Hameed
- Biology Department, College of Science, Taibah University, Al-Madinah Al-Munawarah, 42353, Saudi Arabia
- Botany Department, Faculty of Science, Ain Shams University, Cairo, 11566, Egypt
| | | | - Khawar Majeed
- Department of Plant Sciences, Quaid-I-Azam University, Islamabad, Pakistan
| | - Mariusz Jaremko
- Smart-Health Initiative (SHI) and Red Sea Research Center (RSRC), Division of Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 329555-6900, Saudi Arabia
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7
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Hashem M, Sandhu KS, Ismail SM, Börner A, Sallam A. Validation and marker-assisted selection of DArT-genomic regions associated with wheat yield-related traits under normal and drought conditions. Front Genet 2023; 14:1195566. [PMID: 37292145 PMCID: PMC10245129 DOI: 10.3389/fgene.2023.1195566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Accepted: 05/10/2023] [Indexed: 06/10/2023] Open
Abstract
Quantitative trait loci (QTL) is one of the most important steps in marker-assisted selection. Few studies have validated quantitative trait loci for marker-assisted selection of yield traits under drought stress conditions in wheat. A set of 138 highly diverse wheat genotypes were tested under normal and drought stress conditions for 2 years. Plant height, heading date, spike length, grain number per spike, grain yield per spike, and 1000-kernel weight were scored. High genetic variation was found among genotypes in all traits scored under both conditions in the 2 years. The same panel was genotyped using a diversity-array technology (DArT) marker, and a genome-wide association study was performed to find alleles associated with yield traits under all conditions. A set of 191 significant DArT markers were identified in this study. The results of the genome-wide association study revealed eight common markers in wheat that were significantly associated with the same traits under both conditions in the 2 years. Out of the eight markers, seven were located on the D genome except one marker. Four validated markers were located on the 3D chromosome and found in complete linkage disequilibrium. Moreover, these four markers were significantly associated with the heading date under both conditions and the grain yield per spike under drought stress condition in the 2 years. This high-linkage disequilibrium genomic region was located within the TraesCS3D02G002400 gene model. Furthermore, of the eight validated markers, seven were previously reported to be associated with yield traits under normal and drought conditions. The results of this study provided very promising DArT markers that can be used for marker-assisted selection to genetically improve yield traits under normal and drought conditions.
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Affiliation(s)
- Mostafa Hashem
- Department of Genetics, Faculty of Agriculture, Assiut University, Assuit, Egypt
| | | | - Saleh M. Ismail
- Soils and Water Department, Faculty of Agriculture, Assiut University, Assiut, Egypt
| | - Andreas Börner
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Ahmed Sallam
- Department of Genetics, Faculty of Agriculture, Assiut University, Assuit, Egypt
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
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Reddy SS, Saini DK, Singh GM, Sharma S, Mishra VK, Joshi AK. Genome-wide association mapping of genomic regions associated with drought stress tolerance at seedling and reproductive stages in bread wheat. FRONTIERS IN PLANT SCIENCE 2023; 14:1166439. [PMID: 37251775 PMCID: PMC10213333 DOI: 10.3389/fpls.2023.1166439] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 04/14/2023] [Indexed: 05/31/2023]
Abstract
Understanding the genetic architecture of drought stress tolerance in bread wheat at seedling and reproductive stages is crucial for developing drought-tolerant varieties. In the present study, 192 diverse wheat genotypes, a subset from the Wheat Associated Mapping Initiative (WAMI) panel, were evaluated at the seedling stage in a hydroponics system for chlorophyll content (CL), shoot length (SLT), shoot weight (SWT), root length (RLT), and root weight (RWT) under both drought and optimum conditions. Following that, a genome-wide association study (GWAS) was carried out using the phenotypic data recorded during the hydroponics experiment as well as data available from previously conducted multi-location field trials under optimal and drought stress conditions. The panel had previously been genotyped using the Infinium iSelect 90K SNP array with 26,814 polymorphic markers. Using single as well as multi-locus models, GWAS identified 94 significant marker-trait associations (MTAs) or SNPs associated with traits recorded at the seedling stage and 451 for traits recorded at the reproductive stage. The significant SNPs included several novel, significant, and promising MTAs for different traits. The average LD decay distance for the whole genome was approximately 0.48 Mbp, ranging from 0.07 Mbp (chromosome 6D) to 4.14 Mbp (chromosome 2A). Furthermore, several promising SNPs revealed significant differences among haplotypes for traits such as RLT, RWT, SLT, SWT, and GY under drought stress. Functional annotation and in silico expression analysis revealed important putative candidate genes underlying the identified stable genomic regions such as protein kinases, O-methyltransferases, GroES-like superfamily proteins, NAD-dependent dehydratases, etc. The findings of the present study may be useful for improving yield potential, and stability under drought stress conditions.
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Affiliation(s)
- S Srinatha Reddy
- Department of Genetics and Plant Breeding, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, India
| | - Dinesh Kumar Saini
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India
| | - G Mahendra Singh
- Department of Genetics and Plant Breeding, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, India
| | - Sandeep Sharma
- Department of Genetics and Plant Breeding, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, India
| | - Vinod Kumar Mishra
- Department of Genetics and Plant Breeding, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, India
| | - Arun Kumar Joshi
- Borlaug Institute of South Asia (BISA), NASC Complex, DPS Marg, New Delhi, India
- CIMMYT, NASC Complex, DPS Marg, New Delhi, India
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Wang D, Li Y, Wang H, Xu Y, Yang Y, Zhou Y, Chen Z, Zhou Y, Gui L, Guo Y, Zhou C, Tang W, Zheng S, Wang L, Guo X, Zhang Y, Cui F, Lin X, Jiao Y, He Y, Li J, He F, Liu X, Xiao J. Boosting wheat functional genomics via an indexed EMS mutant library of KN9204. PLANT COMMUNICATIONS 2023:100593. [PMID: 36945776 PMCID: PMC10363553 DOI: 10.1016/j.xplc.2023.100593] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 02/02/2023] [Accepted: 03/17/2023] [Indexed: 06/18/2023]
Abstract
A better understanding of wheat functional genomics can improve targeted breeding for better agronomic traits and environmental adaptation. However, the lack of gene-indexed mutants and the low transformation efficiency of wheat limit in-depth gene functional studies and genetic manipulation for breeding. In this study, we created a library for KN9204, a popular wheat variety in northern China, with a reference genome, transcriptome, and epigenome of different tissues, using ethyl methyl sulfonate (EMS) mutagenesis. This library contains a vast developmental diversity of critical tissues and transition stages. Exome capture sequencing of 2090 mutant lines using KN9204 genome-designed probes revealed that 98.79% of coding genes had mutations, and each line had an average of 1383 EMS-type SNPs. We identified new allelic variations for crucial agronomic trait-related genes such as Rht-D1, Q, TaTB1, and WFZP. We tested 100 lines with severe mutations in 80 NAC transcription factors (TFs) under drought and salinity stress and identified 13 lines with altered sensitivity. Further analysis of three lines using transcriptome and chromatin accessibility data revealed hundreds of direct NAC targets with altered transcription patterns under salt or drought stress, including SNAC1, DREB2B, CML16, and ZFP182, factors known to respond to abiotic stress. Thus, we have generated and indexed a KN9204 EMS mutant library that can facilitate functional genomics research and offer resources for genetic manipulation of wheat.
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Affiliation(s)
- Dongzhi Wang
- Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Yongpeng Li
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China; Center for Agricultural Resources Research, Institute of Genetics and Development Biology, Chinese Academy of Sciences, Shijiazhuang 050022, China
| | - Haojie Wang
- Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yongxin Xu
- Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yiman Yang
- Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Yuxin Zhou
- Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhongxu Chen
- Department of Life Science, Tcuni, Inc, Chengdu 610000, China
| | - Yuqing Zhou
- Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lixuan Gui
- Department of Life Science, Tcuni, Inc, Chengdu 610000, China
| | - Yi Guo
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China
| | - Chunjiang Zhou
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China
| | - Wenqiang Tang
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China
| | - Shuzhi Zheng
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China
| | - Lei Wang
- Center for Agricultural Resources Research, Institute of Genetics and Development Biology, Chinese Academy of Sciences, Shijiazhuang 050022, China
| | - Xiulin Guo
- Plant Genetic Engineering Center of Hebei Province, Institute of Biotechnology and Food Science, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang 050051, China
| | - Yingjun Zhang
- Institute of Cereal and Oil Crops, Hebei Academy of Agriculture and Forestry Sciences, Laboratory of Crop Genetics and Breeding of Hebei, Shijiazhuang 050035, China
| | - Fa Cui
- Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong, College of Agriculture, Ludong University, Yantai 264025, China
| | - Xuelei Lin
- Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Yuling Jiao
- State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Center for Quantitative Biology, Peking University, Beijing 100871, China
| | - Yuehui He
- State Key Laboratory of Protein and Plant Gene Research, School of Advanced Agricultural Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
| | - Junming Li
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China; Center for Agricultural Resources Research, Institute of Genetics and Development Biology, Chinese Academy of Sciences, Shijiazhuang 050022, China.
| | - Fei He
- Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China; Centre of Excellence for Plant and Microbial Science (CEPAMS), JIC-CAS, Beijing 100101, China.
| | - Xigang Liu
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Key Laboratory of Molecular and Cellular Biology, College of Life Sciences, Hebei Normal University, Hebei Collaboration Innovation Center for Cell Signaling, Shijiazhuang 050024, China.
| | - Jun Xiao
- Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China; Centre of Excellence for Plant and Microbial Science (CEPAMS), JIC-CAS, Beijing 100101, China.
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10
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Muthuraja R, Muthukumar T, Natthapol C. Drought tolerance of Aspergillus violaceofuscus and Bacillus licheniformis and their influence on tomato growth and potassium uptake in mica amended tropical soils under water-limiting conditions. FRONTIERS IN PLANT SCIENCE 2023; 14:1114288. [PMID: 36938042 PMCID: PMC10014471 DOI: 10.3389/fpls.2023.1114288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Accepted: 02/06/2023] [Indexed: 06/18/2023]
Abstract
Drought is a significant abiotic stress that alters plant physiology and ultimately affects crop productivity. Among essential plant nutrients, potassium (K) is known to mitigate the deleterious effect of drought on plant growth. If so, K addition or inoculation of potassium solubilizing microorganisms (KSMs) that are tolerant to drought should promote plant growth during water stress. Therefore, in this study, K solubilizing Aspergillus violaceofuscus and Bacillus licheniformis, isolated from saxicolous environments, were tested for their capacity to tolerate drought using different molecular weights (~4000, 6000, and 8000 Da), and concentrations (0, 250, 500, 750, 1000, and 1250 mg/L) of polyethylene glycol (PEG) under in vitro conditions. The results showed that high concentrations (750 and 1000 mg/L) of PEG with different molecular weight considerably improved bacterial cell numbers/fungal biomass and catalase (CAT) and proline activities. Moreover, the ability of KSMs alone or in combination to impart drought tolerance and promote plant growth in the presence and absence of mica (9.3% K2O) supplementation was tested in Alfisol and Vertisol soil types under greenhouse conditions. The results revealed that the tomato plants inoculated with KSMs individually or dually with/without mica improved the physiological and morphological traits of the tomato plants under drought. Generally, tomato plants co-inoculated with KSMs and supplemented with mica were taller (2.62 and 3.38-fold) and had more leaf area (2.03 and 1.98-fold), total root length (3.26 and 8.86-fold), shoot biomass (3.87 and 3.93-fold), root biomass (9.00 and 7.24-fold), shoot K content (3.08 and 3.62-fold), root K content (3.39 and 2.03-fold), relative water content (1.51 and 1.27-fold), CAT activity (2.11 and 2.14-fold), proline content (3.41 and 3.28-fold), and total chlorophyll content (1.81 and 1.90-fold), in unsterilized Alfisol and Vertisol soil types, respectively, than uninoculated ones. Dual inoculation of the KSMs along with mica amendment, also improved the endorrhizal symbiosis of tomato plants more than their individual inoculation or application in both soil types. These findings imply that the A. violaceofuscus and B. licheniformis isolates are promising as novel bioinoculants for improving crop growth in water-stressed and rainfed areas of the tropics in the future.
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Affiliation(s)
- Raji Muthuraja
- Department of Soil Science, Faculty of Agriculture, Kasetsart University, Bangkok, Thailand
- Department of Botany, Bharathiar University, Coimbatore, India
| | | | - Chittamart Natthapol
- Department of Soil Science, Faculty of Agriculture, Kasetsart University, Bangkok, Thailand
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11
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Mohamed EA, Ahmed AAM, Schierenbeck M, Hussein MY, Baenziger PS, Börner A, Sallam A. Screening Spring Wheat Genotypes for TaDreb-B1 and Fehw3 Genes under Severe Drought Stress at the Germination Stage Using KASP Technology. Genes (Basel) 2023; 14:373. [PMID: 36833301 PMCID: PMC9957104 DOI: 10.3390/genes14020373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Revised: 01/16/2023] [Accepted: 01/19/2023] [Indexed: 02/04/2023] Open
Abstract
Drought stress is a major yield-limiting factor throughout the world in wheat (Triticum aestivum L.), causing losses of up to 80% of the total yield. The identification of factors affecting drought stress tolerance in the seedling stage is especially important to increase adaptation and accelerate the grain yield potential. In the current study, 41 spring wheat genotypes were tested for their tolerance to drought at the germination stage under two different polyethylene glycol concentrations (PEG) of 25% and 30%. For this purpose, twenty seedlings from each genotype were evaluated in triplicate with a randomized complete block design (RCBD) in a controlled growth chamber. The following nine parameters were recorded: germination pace (GP), germination percentage (G%), number of roots (NR), shoot length (SL), root length (RL), shoot-root length ratio (SRR), fresh biomass weight (FBW), dry biomass weight (DBW), and water content (WC). An analysis of variance (ANOVA) revealed highly significant differences (p < 0.01) among the genotypes, treatments (PEG25%, PEG30%) and genotypes × treatment interaction, for all traits. The broad-sense heritability (H2) estimates were very high in both concentrations. They ranged from 89.4 to 98.9% under PEG25% and from 70.8 to 98.7% under PEG30%. Citr15314 (Afghanistan) was among the best performing genotypes under both concentrations for most of the germination traits. Two KASP markers for TaDreb-B1 and Fehw3 genes were used to screen all genotypes and to study the effect of these on drought tolerance at the germination stage. All genotypes with Fehw3 (only) showed a better performance for most traits under both concentrations compared to other genotypes having TaDreb-B1 or having both genes. To our knowledge, this work is the first report showing the effect of the two genes on germination traits under severe drought stress conditions.
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Affiliation(s)
- Elsayed A. Mohamed
- Department of Genetics, Faculty of Agriculture, Assiut University, Assiut 71526, Egypt
| | - Asmaa A. M. Ahmed
- Department of Genetics, Faculty of Agriculture, Assiut University, Assiut 71526, Egypt
| | - Matías Schierenbeck
- Resources Genetics and Reproduction, Department Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, OT Gatersleben, D-06466 Stadt Seeland, Germany
- CONICET CCT La Plata, 8 N°1467, La Plata 1900, Argentina
| | - Mohamed Y. Hussein
- Department of Genetics, Faculty of Agriculture, Assiut University, Assiut 71526, Egypt
| | - P. Stephen Baenziger
- Department of Agronomy and Horticulture, University of Nebraska–Lincoln, Lincoln, NE 68583, USA
| | - Andreas Börner
- Resources Genetics and Reproduction, Department Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, OT Gatersleben, D-06466 Stadt Seeland, Germany
| | - Ahmed Sallam
- Department of Genetics, Faculty of Agriculture, Assiut University, Assiut 71526, Egypt
- Resources Genetics and Reproduction, Department Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, OT Gatersleben, D-06466 Stadt Seeland, Germany
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12
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Ahmed HGMD, Zeng Y, Khan MA, Rashid MAR, Ameen M, Akrem A, Saeed A. Genome-wide association mapping of bread wheat genotypes using yield and grain morphology-related traits under different environments. Front Genet 2023; 13:1008024. [PMID: 36733942 PMCID: PMC9887163 DOI: 10.3389/fgene.2022.1008024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Accepted: 11/22/2022] [Indexed: 01/18/2023] Open
Abstract
Depleting water resources and increasing global temperature due to climate change are major challenges to agriculture and food security worldwide. Deciphering the underlying mechanisms of traits contributing to grain development and yield is essential for the development of climate-resilient cultivars. Therefore, this study assessed 105 bread wheat genotypes grown under control, drought, and heat-stress conditions for two crop seasons and performed a genome-wide association study (GWAS) using a 90k SNP array. The genotypes showed significant trait differences under all environmental conditions. Highly significant variation was observed, with moderate (50.09%) to high (76.19%) heritability in the studied germplasms. The studied traits were all also significantly positively correlated. A total of 541 significant associations (p ≤ 10-3) between marker and trait (MTAs) were observed after crossing the FDR <0.05 threshold for all traits. Among these, 195, 179, and 167 significant MTAs were detected under control, drought, and heat-stress conditions, respectively. Under the control and drought conditions, pleiotropic loci BS00010616_51 and BS00010868_51 were observed on chromosomes 7B and 1B situated at 186.24 cM and 35.47 cM, respectively. Pleiotropic loci BS00010868_51, Kukri_c11154_1723, and Ex_c10068_1509 were identified on chromosomes 1B, 5B, and 2A, respectively, under control and heat stress conditions. A stable and consistent locus (Excalibur_c20796_395) on chromosome 7A, located at 372.34 cM, was also linked to grain morphology and yield-related attributes in control, drought, and heat-stress conditions. The results of the current study confirmed several previously reported MTAs for the traits under consideration and identified new MTAs under harsh climatic conditions. These SNPs will aid in the discovery of novel genes in wheat. SNPs showing significant associations may be used in marker-assisted selection and allow the development of drought- and heat-tolerant genotypes with high yields to address global food security concerns.
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Affiliation(s)
- Hafiz Ghulam Muhu-Din Ahmed
- Department of Plant Breeding and Genetics, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan,*Correspondence: Hafiz Ghulam Muhu-Din Ahmed, ; Yawen Zeng,
| | - Yawen Zeng
- Biotechnology and Germplasm Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming, China,*Correspondence: Hafiz Ghulam Muhu-Din Ahmed, ; Yawen Zeng,
| | - Muhammad Ahsan Khan
- Department of Plant Breeding and Genetics, University of Agriculture, Faisalabad, Pakistan
| | - Muhammad Abdul Rehman Rashid
- Department of Agricultural Sciences, Government College University Faisalabad, Faisalabad, Pakistan,Department of Bioinformatics and Biotechnology, Government College University Faisalabad, Faisalabad, Pakistan
| | - Muhammad Ameen
- Department of Soil Science, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | - Ahmed Akrem
- Institute of Botany, Bahauddin Zakariya University, Multan, Pakistan
| | - Amjad Saeed
- Institute of Forest Sciences Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
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13
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Khan A, Ali A, Ullah Z, Ali I, Kaushik P, Alyemeni MN, Rasheed A, Sher H. Exploiting the drought tolerance of wild Elymus species for bread wheat improvement. FRONTIERS IN PLANT SCIENCE 2022; 13:982844. [PMID: 36275557 PMCID: PMC9583530 DOI: 10.3389/fpls.2022.982844] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 08/29/2022] [Indexed: 05/27/2023]
Abstract
Crop wild resources are excellent sources of new genetic variation for resilience against climate extremes. However, detailed characterization of the desirable phenotypes is essential before using these crop wild resources in breeding programs. This current study was, therefore, conducted to investigate the water stress responses of eight wild Elymus species and two wheat cultivars. The experiment was carried out under varying levels of osmotic stress induced by polyethylene glycol and progressive water stress through different field capacities. Water stress significantly reduced both physiological and biochemical traits compared to control, ranging from 7.1% (protein content) to 34.5% (chlorophyll) under moderate stress and 9.1-45.8% under severe stress. The anatomical features were also affected under progressive water stress, including a reduction in xylem vessel diameter (7.92 and 16.50%), phloem length (4.36 and 7.18%), vascular bundle length (3.09 and 6.04%), and ground tissue thickness (2.36 and 5.52%), respectively. Conclusively, Elymus borianus (endemic to Swat, Pakistan), E. russelli, E. caninus, E. longioristatus, and E. dauhuricus outperformed the check wheat cultivar, Pirsabak 2005, which is a rainfed variety. The results revealed that Elymus species belonging to the tertiary gene pool of bread wheat could be an excellent drought tolerance source for use in a breeding program.
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Affiliation(s)
- Ajab Khan
- Center for Plant Sciences and Biodiversity, University of Swat, Swat, Pakistan
| | - Ahmad Ali
- Center for Plant Sciences and Biodiversity, University of Swat, Swat, Pakistan
| | - Zahid Ullah
- Center for Plant Sciences and Biodiversity, University of Swat, Swat, Pakistan
| | - Iftikhar Ali
- Center for Plant Sciences and Biodiversity, University of Swat, Swat, Pakistan
- State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China
| | - Prashant Kaushik
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politécnica de Valéncia, Valencia, Spain
| | | | - Awais Rasheed
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| | - Hassan Sher
- Center for Plant Sciences and Biodiversity, University of Swat, Swat, Pakistan
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14
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Shah S, Tiwari A, Song X, Talchabahdel R, Habiyakare T, Adhikari A. Drought index predictability for historical and future periods across the Southern plain of Nepal Himalaya. ENVIRONMENTAL MONITORING AND ASSESSMENT 2022; 194:642. [PMID: 35930072 DOI: 10.1007/s10661-022-10275-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 07/02/2022] [Indexed: 06/15/2023]
Abstract
Drought episodes across the Himalayas are inevitable due to rapidly increasing atmospheric temperatures and uncertainties in rainfall patterns. Tarai of Nepal is a tropical region located in the foothills of the Central Himalaya as a country's food granary with a contribution of over 50% to the entire country's agricultural production. However, there is a lack of detailed studies exploring the spatiotemporal occurrence of drought in these regions under the changing climate. In this study, we used the ensemble of nine climate models from the Coupled Model Intercomparison Project Phase 6 (CMIP6) under two shared socio-economic pathways (SSPs), namely SSP245 (an intermediate development pathway) and SSP585 (a high development pathway), to assess anticipated drought during the mid-century. We used bias-corrected gridded data from the Worldclim to project drought events by the end of the mid-century based on the historical period (1989-2018). We computed historical and projected Thornthwaite moisture index (TMI) to evaluate soil moisture conditions on a seasonal scale for the Tarai region's Eastern, Central, and Western parts. The model ensemble projected a significant increase in precipitation and temperature for the entire Tarai by the end of mid-century. However, the winter and spring seasons are projected to suffer precipitation deficiency and a temperature rise. Our results indicated that the Eastern Tarai would likely experience a decrease in winter precipitation. We emphasize that the presented spatiotemporal pattern of the MI will be instrumental in addressing the irrigation facility's needs, choice, and rotation of crops under the changing climate scenarios and in improving our mitigation measures and adaptation plans for sustainability of the agriculture in drought-prone areas.
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Affiliation(s)
- Suraj Shah
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Achyut Tiwari
- Central Department of Botany, Tribhuvan University, Kirtipur Kathmandu, Nepal
| | - Xianfeng Song
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China.
| | | | - Telesphore Habiyakare
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Arjun Adhikari
- Department of Natural Resource Ecology and Management, Oklahoma State University, 008C Agricultural Hall, Stillwater, OK, 74078, USA
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15
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Ahmed HGMD, Zeng Y, Shah AN, Yar MM, Ullah A, Ali M. Conferring of drought tolerance in wheat ( Triticum aestivum L.) genotypes using seedling indices. FRONTIERS IN PLANT SCIENCE 2022; 13:961049. [PMID: 35937360 PMCID: PMC9355593 DOI: 10.3389/fpls.2022.961049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 06/29/2022] [Indexed: 06/15/2023]
Abstract
Wheat is the most widely grown and consumed crop because of its economic and social benefits. This crop is more important globally for food and feed, and its productivity is particularly vulnerable to abiotic factors. In this study, 40 wheat genotypes were studied to access the drought tolerance level using completely randomized design (CRD) in 250 ml disposable cups through morpho-physiological attributes at seedling stage. The wheat germplasm was tested under normal and two drought stress level D1 (50% field capacity) and D2 (75% field capacity) for different seedling attributes such as germination percentage (GP), chlorophyll content (CC), shoot length (SL), root length (RL), shoot fresh weight (SFW), root fresh weight (RFW), seedling fresh weight (SDFW), shoot dry weight (SDW), root dry weight (RDW), relative water content (RWC), root/shoot ratio (RS), and seedling dry weight (SeDW). The results of analysis of variance (ANOVA) and spider analysis indicate that significant amount of genetic variation was present and behavior of studied germplasm showed different behavior in different environment. The correlation analysis showed that root length has significantly positive association with root/shoot ratio, dry weight, and fresh weight while negatively correlated with shoot length and relative water content. Based on the positively associated traits, the studied genetic material would improve genetic gain for drought tolerance. The multivariate analysis showed that out 13 principal components only five PCs were significant and has eigenvalue > 1, cumulatively showed 82.33, 83.07, and 97.34% of total variation under normal, D1 and D2 conditions, respectively. Significantly, the result of spider graph and multivariate analysis showed that genotypes G47, G48, G65, G68, and G80 performed well in all drought stress conditions and considered as drought-tolerant genotypes. The best performing genotypes can be used in future breeding programs. The selection on the bases of studied attributes is effective for development of drought-tolerant and high-yielding varieties for sustainable food security.
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Affiliation(s)
- Hafiz Ghulam Muhu-Din Ahmed
- Department of Plant Breeding and Genetics, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | - Yawen Zeng
- Biotechnology and Germplasm Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming, China
| | - Adnan Noor Shah
- Department of Agricultural Engineering, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan, Pakistan
| | - Muhammad Majid Yar
- Department of Plant Breeding and Genetics, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | - Aziz Ullah
- Department of Plant Breeding and Genetics, Faculty of Agriculture, University of Sargodha, Sargodha, Pakistan
| | - Muhammad Ali
- Department of Environmental Sciences, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
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16
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Ahmed HGMD, Zeng Y, Iqbal M, Rashid MAR, Raza H, Ullah A, Ali M, Yar MM, Shah AN. Genome-wide association mapping of bread wheat genotypes for sustainable food security and yield potential under limited water conditions. PLoS One 2022; 17:e0263263. [PMID: 35358203 PMCID: PMC8970394 DOI: 10.1371/journal.pone.0263263] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2021] [Accepted: 01/17/2022] [Indexed: 12/12/2022] Open
Abstract
Determining the genetic basis of yield and water deficient tolerance in wheat is vital for wheat breeding programs. Herein, a genome-wide association study (GWAS) was performed for water deficient and yield-related attributes on wheat genotypes with high-density Illumina 90K Infinium SNP array. Major yield and drought-related attributes were phenotyped on a panel of Pakistani and foreign accessions grown in non-stressed and water deficient stressed environments during two crop cycles. Among all accessions, highly significant variations were shown in studied environments for examined characters. Water deficient conditions, reduced the wheat yield and had strong and positive correlation among relative water content and grain yield per plant. Population structure analyses based on 90,000 SNP data, classify the accessions into 4 sub-populations. Marker-trait association analyses (MTA) revealed that 134 significant SNPs were linked with yield and drought tolerance attributes. Pleotropic loci RAC875_s117925_244 and RAC875_c16333_340 located on chromosome 5A and 2A respectively, were significantly linked with relative water contents (RWC), cell membrane thermo-stability (CMT), grain per spike (GPS), spikelet per spike (SPS) and grain yield per plant (GYP). The markers Ra_c58279_684, BobWhite_c23828_341 and IAAV3414 located on chromosomes 2A, 6B and 7B respectively, showed pleotropic effects for RWC, GPS and GYP under both environments. The current experiment not only validated several MTAs reported in other studies but also discovered novel MTAs which significant under drought-stressed conditions. A total of 171 candidate genes were recognized that could be cloned and functionally characterized for the respective associated traits. For RWC and CMT, total 11 and 3 associated SNPs were mapped on coding DNA sequence (CDS) of the identified candidate genes. Isolation and characterization of the candidate genes herein mapped SNPs will be useful in discovering novel genes underpinning drought tolerance in bread wheat to fulfill the wheat demand and sustainable food security under limited water conditions.
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Affiliation(s)
- Hafiz Ghulam Muhu-Din Ahmed
- Department of Plant Breeding and Genetics, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
- * E-mail: (HGMDA); (YZ)
| | - Yawen Zeng
- Biotechnology and Germplasm Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming, China
- * E-mail: (HGMDA); (YZ)
| | - Muhammad Iqbal
- Department of Plant Breeding and Genetics, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | | | - Humayun Raza
- Department of Plant Breeding and Genetics, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | - Aziz Ullah
- Department of Plant Breeding and Genetics, University of Sargodha, Sargodha, Pakistan
| | - Muhammad Ali
- Department of Environmental Sciences, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | - Muhammad Majid Yar
- Department of Plant Breeding and Genetics, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | - Adnan Noor Shah
- Department of Agricultural Engineering, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan, Punjab, Pakistan
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Fiorilli V, Maghrebi M, Novero M, Votta C, Mazzarella T, Buffoni B, Astolfi S, Vigani G. Arbuscular Mycorrhizal Symbiosis Differentially Affects the Nutritional Status of Two Durum Wheat Genotypes under Drought Conditions. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11060804. [PMID: 35336686 PMCID: PMC8954065 DOI: 10.3390/plants11060804] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 02/23/2022] [Accepted: 03/14/2022] [Indexed: 05/17/2023]
Abstract
Durum wheat is one of the most important agricultural crops, currently providing 18% of the daily intake of calories and 20% of daily protein intake for humans. However, being wheat that is cultivated in arid and semiarid areas, its productivity is threatened by drought stress, which is being exacerbated by climate change. Therefore, the identification of drought tolerant wheat genotypes is critical for increasing grain yield and also improving the capability of crops to uptake and assimilate nutrients, which are seriously affected by drought. This work aimed to determine the effect of arbuscular mycorrhizal fungi (AMF) on plant growth under normal and limited water availability in two durum wheat genotypes (Svevo and Etrusco). Furthermore, we investigated how the plant nutritional status responds to drought stress. We found that the response of Svevo and Etrusco to drought stress was differentially affected by AMF. Interestingly, we revealed that AMF positively affected sulfur homeostasis under drought conditions, mainly in the Svevo cultivar. The results provide a valuable indication that the identification of drought tolerant plants cannot ignore their nutrient use efficiency or the impact of other biotic soil components (i.e., AMF).
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Affiliation(s)
- Valentina Fiorilli
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Moez Maghrebi
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Mara Novero
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Cristina Votta
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Teresa Mazzarella
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Beatrice Buffoni
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Stefania Astolfi
- Department of Agricultural and Forestry Sciences (DAFNE), University of Tuscia, 01100 Viterbo, Italy;
| | - Gianpiero Vigani
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
- Correspondence: ; Tel.: +39-0116706360
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18
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Ahmed HGMD, Naeem M, Zeng Y, Rashid MAR, Ullah A, Saeed A, Qadeer A. Genome-wide association mapping for high temperature tolerance in wheat through 90k SNP array using physiological and yield traits. PLoS One 2022; 17:e0262569. [PMID: 35030233 PMCID: PMC8759701 DOI: 10.1371/journal.pone.0262569] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Accepted: 12/29/2021] [Indexed: 01/10/2023] Open
Abstract
Dissecting the genetic basis of physiological and yield traits against tolerance to heat stress is an essential in wheat breeding programs to boost up the wheat yield for sustainable food security. Herein, a genome-wide association study (GWAS) was performed to reveal the genetic basis of heat tolerance using high-density Illumina 90K Infinium SNPs array through physiological and yield indices. These indices were phenotyped on a diverse panel of foreign and domestic genotypes of Pakistan, grown in normal and heat-stressed environments. Based on STRUCTURE analysis, the studied germplasm clustered into four sub-population. Highly significant variations with a range of moderate (58.3%) to high (77.8%) heritability was observed under both conditions. Strong positive correlation existed among physiological and yield related attributes. A total of 320 significant (-log10 P ≥ 3) marker-trait associations (MTAs) were identified for the observed characters. Out of them 169 and 151 MTAs were recorded in normal and heat stress environments, respectively. Among the MTA loci, three (RAC875_c103017_302, Tdurum_contig42087_1199, and Tdurum_contig46877_488 on chromosomes 4B, 6B, and 7B respectively), two (BobWhite_c836_422 and BS00010616_51) and three (Kukri_rep_c87210_361, D_GA8KES401BNLTU_253 and Tdurum_contig1015_131) on chromosomes 5A, 1B, and 3D at the positions 243.59cM, 77.82cM and 292.51cM) showed pleiotropic effects in studied traits under normal, heat-stressed and both conditions respectively. The present study not only authenticated the numerous previously reported MTAs for examined attributes but also revealed novel MTAs under heat-stressed conditions. Identified SNPs will be beneficial in determining the novel genes in wheat to develop the heat tolerant and best yielded genotypes to fulfill the wheat requirement for the growing population.
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Affiliation(s)
- Hafiz Ghulam Muhu-Din Ahmed
- Department of Plant Breeding and Genetics, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Pakistan
- * E-mail: (HGMA); (YZ)
| | - Muhammad Naeem
- Department of Plant Breeding and Genetics, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Pakistan
| | - Yawen Zeng
- Biotechnology and Germplasm Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming, China
- * E-mail: (HGMA); (YZ)
| | | | - Aziz Ullah
- Department of Plant Breeding and Genetics, University of Sargodha, Sargodha, Pakistan
| | - Amjad Saeed
- Department of Forestry Range and Wildlife Management, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | - Abdul Qadeer
- Soil Fertility and Plant Nutrition Laboratory, Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, Pakistan
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Wasaya A, Rehman I, Mohi Ud Din A, Hayder Bin Khalid M, Ahmad Yasir T, Mansoor Javaid M, El-Hefnawy M, Brestic M, Rahman MA, El Sabagh A. Foliar application of putrescine alleviates terminal drought stress by modulating water status, membrane stability, and yield- related traits in wheat ( Triticum aestivum L.). FRONTIERS IN PLANT SCIENCE 2022; 13:1000877. [PMID: 37151567 PMCID: PMC10160385 DOI: 10.3389/fpls.2022.1000877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 12/29/2022] [Indexed: 05/09/2023]
Abstract
Drought stress is one of the major limitations to the growth and yield productivity of cereal crops. It severely impairs the early growing and grain -filling stages of wheat. Therefore, cost- effective and eco-friendly approaches for alleviating drought stress in cereal crops are in high demand. Polyamines, such as putrescine, have a significant effect on improving crop yield under drought- stress conditions. Therefore, the current study was executed with the aim of exploring the significance of putrescine in alleviating drought stress and improving yield- related traits in wheat. Two distinct wheat cultivars (Fakhar-e-Bhakkar and Anaj-2017) were treated with the foliar application of different concentrations (control, 0.5, 1.0, and 1.5 PPM) of putrescine (put) under two moisture conditions (well- watered and terminal drought stress). The results demonstrate that the imposition of terminal drought stress significantly reduces different physiological and yield- related traits of both wheat cultivars. The reduction of relative water content (RWC%), membrane stability index (MSI), leaf area, tillers per plant, biomass yield, number of spikelets per spike, 100-grain weight, grain yield per plant, and straw yield was greater in Anaj-2017 than in Fakhar-e-Bhakkar cultivar. The results further explain that the foliar application of increased concentrations of putrescine from 0.0 to 1.0 PPM gradually improved physiological and yield traits, whereas these traits declined with the application of putrescine at the highest dose (1.5 PPM). The exogenous application of 1.0 PPM putrescine improved the relative water content (19.76%), specific leaf area (41.47%), and leaf area ratio (35.84%) compared with the controlled treatment. A higher grain yield (28.0 g plant-1) and 100-grain weight (3.8 g) were obtained with the foliar application of 1.0 PPM putrescine compared with controlled treatments. The findings of this study confirm the protective role of putrescine against terminal drought stress. It is therefore recommended to use putrescine at a concentration of 1.0 PPM, which could help alleviate terminal drought stress and attain better wheat yield.
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Affiliation(s)
- Allah Wasaya
- Department of Agronomy, Bahauddin Zakariya University Multan, Multan, Pakistan
- College of Agriculture, University of Layyah, Layyah, Pakistan
- *Correspondence: Allah Wasaya, ; Marian Brestic, ; Ayman El Sabagh,
| | - Iqra Rehman
- Department of Agronomy, Bahauddin Zakariya University Multan, Multan, Pakistan
- College of Agriculture, University of Layyah, Layyah, Pakistan
| | - Atta Mohi Ud Din
- National Research Center of Intercropping , The Islamia University of Bahawalpur, Multan, Pakistan
| | | | | | | | - Mohamed El-Hefnawy
- Department of Chemistry, Rabigh College of Sciences and Arts, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Marian Brestic
- Department of Plant Physiology, Slovak University of Agriculture, Nitra, Slovakia
- *Correspondence: Allah Wasaya, ; Marian Brestic, ; Ayman El Sabagh,
| | - Md Atikur Rahman
- Grassland and Forage Division, National Institute of Animal Science, Rural Development Administration, Cheonan, Republic of Korea
| | - Ayman El Sabagh
- Department of Agronomy, Faculty of Agriculture, Kafrelsheikh University, Kafr al-Sheik, Egypt
- Department of Field Crops, Faculty of Agriculture, Siirt University, Siirt, Türkiye
- *Correspondence: Allah Wasaya, ; Marian Brestic, ; Ayman El Sabagh,
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Kouighat M, Hanine H, El Fechtali M, Nabloussi A. First Report of Sesame Mutants Tolerant to Severe Drought Stress during Germination and Early Seedling Growth Stages. PLANTS 2021; 10:plants10061166. [PMID: 34201345 PMCID: PMC8227276 DOI: 10.3390/plants10061166] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 03/31/2021] [Accepted: 04/09/2021] [Indexed: 11/16/2022]
Abstract
In the context of climate change and water scarcity, there is a need to develop and use drought-tolerant sesame cultivars. This study was conducted to evaluate the response of 13 sesame genotypes, including 11 mutants and their wild-types, to drought during germination and early seedling growth. Moderate and severe drought stress was simulated by applying polyethylene glycol (PEG) at two osmotic potentials, −0.6 MPa and −1.2 MPa, respectively, on seeds of two successive mutant generations, M2 and M3. The parameters measured or calculated were germination percentage (GP), germination rate (GR), mean germination time (MGT), root length (RL), shoot length (SL), root to shoot ratio (RSR), and the seedling vigor index (SVI). Results showed the significant effect of genotype, drought, and drought × genotype interaction on all parameters investigated. Under severe drought, seeds of seven genotypes, including wild types, were not able to germinate. There was a drastic decline of all parameters for the rest, except MGT and RSR, which markedly increased. Interestingly, two mutants, “ML2-5” and “ML2-10”, were identified as the most tolerant to severe drought and the most stable over both generations. The present work is the first report of sesame germplasm with such a high level of tolerance to drought during germination and early seedling growth stages.
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Affiliation(s)
- Mohamed Kouighat
- Research Unit of Plant Breeding and Plant Genetic Resources Conservation, National Institute of Agricultural Research, Regional Agricultural Research Center of Meknes, Meknes 50000, Morocco; (M.K.); (M.E.F.)
- Laboratory of Bioprocess and Bio-Interfaces, Faculty of Science and Technology, University Moulay Slimane, Béni-Mellal 23000, Morocco;
| | - Hafida Hanine
- Laboratory of Bioprocess and Bio-Interfaces, Faculty of Science and Technology, University Moulay Slimane, Béni-Mellal 23000, Morocco;
| | - Mohamed El Fechtali
- Research Unit of Plant Breeding and Plant Genetic Resources Conservation, National Institute of Agricultural Research, Regional Agricultural Research Center of Meknes, Meknes 50000, Morocco; (M.K.); (M.E.F.)
| | - Abdelghani Nabloussi
- Research Unit of Plant Breeding and Plant Genetic Resources Conservation, National Institute of Agricultural Research, Regional Agricultural Research Center of Meknes, Meknes 50000, Morocco; (M.K.); (M.E.F.)
- Correspondence:
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Mohi-Ud-Din M, Hossain MA, Rohman MM, Uddin MN, Haque MS, Ahmed JU, Hossain A, Hassan MM, Mostofa MG. Multivariate Analysis of Morpho-Physiological Traits Reveals Differential Drought Tolerance Potential of Bread Wheat Genotypes at the Seedling Stage. PLANTS (BASEL, SWITZERLAND) 2021; 10:879. [PMID: 33925375 PMCID: PMC8145240 DOI: 10.3390/plants10050879] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Revised: 04/22/2021] [Accepted: 04/22/2021] [Indexed: 11/23/2022]
Abstract
Drought is one of the foremost environmental stresses that can severely limit crop growth and productivity by disrupting various physiological processes. In this study, the drought tolerance potential of 127 diverse bread wheat genotypes was evaluated by imposing polyethylene glycol (PEG)-induced drought followed by multivariate analysis of several growth-related attributes. Results showed significant variations in the mean values of different morpho-physiological traits due to PEG-induced drought effects. Correlation analysis revealed that most of the studied traits were significantly correlated among them. The robust hierarchical co-clustering indicated that all the genotypes were clustered into four major groups, with cluster 4 (26 genotypes) being, in general, drought-tolerant followed by cluster 1 (19 genotypes) whereas, cluster 2 (55 genotypes) and 3 (27 genotypes) being drought-sensitive. Linear discriminant analysis (LDA) confirmed that around 90% of the genotypes were correctly assigned to clusters. Squared distance (D2) analysis indicated that the clusters differed significantly from each other. Principal component analysis (PCA) and genotype by trait biplot analysis showed that the first three components accounted for 71.6% of the total variation, with principal component (PC) 1 accounting for 35.4%, PC2 for 24.6% and PC3 for 11.6% of the total variation. Both PCA and LDA revealed that dry weights, tissue water content, cell membrane stability, leaf relative water content, root-shoot weight ratio and seedling vigor index played the most important discriminatory roles in explaining drought tolerance variations among 127 wheat genotypes. Our results conclude that the drought-tolerant and -sensitive wheat genotypes identified in this study would offer valuable genetic tools for further improvement of wheat productivity in arid and semi-arid regions during this time of unpredictable climate change.
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Affiliation(s)
- Mohammed Mohi-Ud-Din
- Department of Crop Botany, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (M.M.-U.-D.); (M.N.U.); (M.S.H.)
- Department of Crop Botany, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur 1706, Bangladesh;
| | - Md. Alamgir Hossain
- Department of Crop Botany, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (M.M.-U.-D.); (M.N.U.); (M.S.H.)
| | - Md. Motiar Rohman
- Plant Breeding Division, Bangladesh Agricultural Research Institute, Gazipur 1701, Bangladesh;
| | - Md. Nesar Uddin
- Department of Crop Botany, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (M.M.-U.-D.); (M.N.U.); (M.S.H.)
| | - Md. Sabibul Haque
- Department of Crop Botany, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (M.M.-U.-D.); (M.N.U.); (M.S.H.)
| | - Jalal Uddin Ahmed
- Department of Crop Botany, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur 1706, Bangladesh;
| | - Akbar Hossain
- Bangladesh Wheat and Maize Research Institute, Dinajpur 5200, Bangladesh;
| | - Mohamed M. Hassan
- Department of Biology, College of Science, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia;
| | - Mohammad Golam Mostofa
- Department of Biochemistry and Molecular Biology, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur 1706, Bangladesh
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Physio-Morphological and Biochemical Trait-Based Evaluation of Ethiopian and Chinese Wheat Germplasm for Drought Tolerance at the Seedling Stage. SUSTAINABILITY 2021. [DOI: 10.3390/su13094605] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
For Ethiopia’s wheat production, drought is a major natural disaster. Exploration of drought-resistant varieties from a bulk of wheat germplasm conserved in the gene bank is of paramount importance for breeding climate change-resilient modern cultivars. The present study was aimed at identifying the best performing drought-resistant genotypes under non-stress and polyethylene glycol simulated (PEG) stress conditions in a growth chamber. Forty diverse Ethiopian bread and durum wheat cultivars along with three Chinese bread wheat cultivars possessing strong drought resistance and susceptibility were evaluated. After acclimation with the natural environment, the seedlings were imposed to severe drought stress (20% PEG6000), and 15 seedling traits including photosynthetic and free proline were investigated. Our findings indicated that drought stress caused a profound decline in plant water consumption (83.0%), shoot fresh weight (64.9%), stomatal conductance (61.6%), root dry weight (55.2%), and other investigated traits except root to shoot length ratio and proline content which showed a significant increase under drought stress. A significant and positive correlation was found between photosynthetic pigments in both growth conditions. Proline exhibited a negative correlation with most of the investigated traits except root to shoot length ratio and all photosynthetic pigments which showed a positive and non-significant association. Our result also showed a wide range of genetic variation (CV) ranging from 3.23% to 47.3%; the highest in shoot dry weight (SDW) (47.3%) followed by proline content (44.63%) and root dry weight (36.03%). Based on multivariate principal component biplot analysis and average sum of ranks (ASR), G12, G16 and G25 were identified as the best drought tolerant and G6, G42, G4, G11, and G9 as bottom five sensitive. The potential of these genotypes offers further investigation at a molecular and cellular level to identify the novel gene associated with the stress response.
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Ahmed K, Shabbir G, Ahmed M, Shah KN. Phenotyping for drought resistance in bread wheat using physiological and biochemical traits. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 729:139082. [PMID: 32371202 PMCID: PMC7189857 DOI: 10.1016/j.scitotenv.2020.139082] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2020] [Revised: 04/25/2020] [Accepted: 04/26/2020] [Indexed: 05/21/2023]
Abstract
Drought is one of the most prominent limiting factors that negatively affect crop productivity by manipulating its physiological pathway. One hundred twenty diverse bread wheat genotypes were used in a pot experiment to explore the relationship among their fifteen physio-biochemical traits (PBT) by using multivariate analysis, heatmapping and stress tolerance index (STI) for grain yield as a marker trait to identify high yielding genotype with maximum stress tolerance capability. Increased proline and sugar accumulation were observed from control to moisture deficient environments by 159% and 122%, respectively. Moreover, leaf membrane stability index (LMSI), leaf relative water content (LRWC), relative dry weight (RDW), chlorophyll content, leaf surface area (LSA), Leaf succulence (LS), canopy temperature depression (CTD), relative excised leaf water loss (RELWL) and leaf osmotic potential (LOP) showed significantly decreasing trend in drought stress treatment as compared to well-watered plants by -21%, -21%, -34%, -22%, -38%, -37%, -46%, -18% and -35% respectively. Additionally, principal component analysis and genotype by trait biplot analysis showed that initial 7 principal components (PC1 to PC7) represented 77.27% and 79.02% of total cumulative variation under control and drought stress respectively. Genotypic-Phenotypic correlation revealed that most of the attributes were higher in case of genotypic correlation component (rg) as compared to the phenotypic correlation component (rp) indicating more genetic association between traits. The darker and lighter colour scale produced by heatmap exhibited contrasting nature of genotypes, as positive side with higher values represented drought resistance while values on the negative side with lower values showed susceptible performance of genotypes. Our results concluded that the studied PBT associated with STI for grain yield are the main factors which may contribute in improved productivity of wheat crop and if these traits show appropriate performance under stress condition the crop will show the more productive returns under changing climate.
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Affiliation(s)
- Kashif Ahmed
- Department of Plant Breeding and Genetics, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan
| | - Ghulam Shabbir
- Department of Plant Breeding and Genetics, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan
| | - Mukhtar Ahmed
- Department of Agricultural Research for Northern Sweden, Swedish University of Agricultural Sciences, Umeå 90183, Sweden; Department of Agronomy, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan.
| | - Kausar Nawaz Shah
- Department of Plant Breeding and Genetics, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi 46300, Pakistan
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Khadka K, Raizada MN, Navabi A. Recent Progress in Germplasm Evaluation and Gene Mapping to Enable Breeding of Drought-Tolerant Wheat. FRONTIERS IN PLANT SCIENCE 2020; 11:1149. [PMID: 32849707 PMCID: PMC7417477 DOI: 10.3389/fpls.2020.01149] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 07/15/2020] [Indexed: 05/02/2023]
Abstract
There is a need to increase wheat productivity to meet the food demands of the ever-growing human population. However, accelerated development of high yielding varieties is hindered by drought, which is worsening due to climate change. In this context, germplasm diversity is central to the development of drought-tolerant wheat. Extensive collections of these genetic resources are conserved in national and international genebanks. In addition to phenotypic assessments, the use of advanced molecular techniques (e.g., genotype by sequencing) to identify quantitative trait loci (QTLs) for drought tolerance related traits is useful for genome- and marker-assisted selection based approaches. Therefore, to assist wheat breeders at a critical time, we searched the recent peer-reviewed literature (2011-current), first, to identify wheat germplasm observed to be useful genetic sources for drought tolerance, and second, to report QTLs associated with drought tolerance. Though many breeders limit the parents used in breeding programs to a familiar core collection, the results of this review show that larger germplasm collections have been sources of useful genes for drought tolerance in wheat. The review also demonstrates that QTLs for drought tolerance in wheat are associated with diverse physio-morphological traits, at different growth stages. Here, we also briefly discuss the potential of genome engineering/editing to improve drought tolerance in wheat. The use of CRISPR-Cas9 and other gene-editing technologies can be used to fine-tune the expression of genes controlling drought adaptive traits, while high throughput phenotyping (HTP) techniques can potentially accelerate the selection process. These efforts are empowered by wheat researcher consortia.
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Affiliation(s)
- Kamal Khadka
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
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25
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Effects of Drought Stress on Some Agronomic and Morpho-Physiological Traits in Durum Wheat Genotypes. SUSTAINABILITY 2020. [DOI: 10.3390/su12145610] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Durum wheat performance in the Mediterranean climate is limited when water scarcity occurs before and during anthesis. The present research was performed to determine the effect of drought stress on several physiological and agro-morphological traits in 17 durum wheat genotypes under two conditions (control and drought) over two years. The results of analysis of variance indicated that the various durum wheat genotypes responded differently to drought stress. Drought stress significantly reduced the grain filling period, plant height, peduncle length, number of spikes per plot, number of grains per spike, thousand grains weight, grain yield, biomass, and harvest index in all genotypes compared to the control condition. The heatmap-based correlation analysis indicated that grain yield was positively and significantly associated with phenological characters (days to heading, days to physiological maturity, and grain filling period), as well as number of spikes per plant, biomass, and harvest index under drought conditions. The yield-based drought and susceptible indices revealed that stress tolerance index (STI), geometric mean productivity (GMP), mean productivity (MP), and harmonic mean (HM) were positively and significantly correlated with grain yields in both conditions. Based on the average of the sum of ranks across all indices and a three-dimensional plot, two genotypes (G9 and G12) along with the control variety (G1) were identified as the most tolerant genotypes. Among the investigated genotypes, the new breeding genotype G12 showed a high drought tolerance and yield performance under both conditions. Hence, this genotype can be a candidate for further multi-years and locations test as recommended for cultivation under rainfed conditions in arid and semi-arid regions.
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Ahmed HGMD, Zeng Y, Yang X, Anwaar HA, Mansha MZ, Hanif CMS, Ikram K, Ullah A, Alghanem SMS. Conferring drought-tolerant wheat genotypes through morpho-physiological and chlorophyll indices at seedling stage. Saudi J Biol Sci 2020; 27:2116-2123. [PMID: 32714037 PMCID: PMC7376211 DOI: 10.1016/j.sjbs.2020.06.019] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 06/09/2020] [Accepted: 06/11/2020] [Indexed: 11/23/2022] Open
Abstract
The decrease in water resources due to the excessive use of water for irrigation purpose and climatic changes represents a serious world-wide threat to food security. In this regards, 50 wheat accessions were analyzed, using completely random factorial design at the seedlings stage under normal and drought stress conditions. Significant variation was detected among all accessions under both conditions. All characters studied showed variations in the mean values in water deficit environments in studied gemplasm at seedling stage. As seedling fresh weight, dry weight, relative water content, cell membrane thermo-stability, chlorophyll a & b were positively associated among themselves under drought conditions which showed the significance of these attribute for water deficit areas in future wheat breeding programs. Based on their performance, five accessions namely Aas-11, Chakwal-86, Pasban-90, Chakwal-97 and Kohistan-97 were selected as drought tolerant and three accessions namely Mairaj-08, Lasani-2008 and Gomal-2008 were selected as drought susceptible genotypes. The choice of wheat accessions based on the characteristics of the seedlings is informal, low-priced and less hassle. Likewise, the seedlings attributes exhibit moderate to high variation with an additive genetics effects on the environments. Best performance accessions under water deficit environment will be beneficial in future wheat breeding schemes and early screening for the attributes suggested in current experiment will be useful for producing best-yielded and drought-tolerance wheat genotypes to sustainable food security.
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Affiliation(s)
- Hafiz Ghulam Muhu-Din Ahmed
- University of Central Punjab, Department of Botany, Punjab Group of Colleges, Bahawalpur 63100, Pakistan.,Biotechnology and Germplasm Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, China
| | - Yawen Zeng
- Biotechnology and Germplasm Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, China
| | - Xiaomeng Yang
- Biotechnology and Germplasm Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming 650205, China
| | - Hafiz Arslan Anwaar
- Department of Plant Pathology, Bahauddin Zakariya University, Multan, Pakistan
| | | | - Ch M Shahid Hanif
- College of Agriculture, Bahauddin Zakariya University, Bahadur Sub Campus, Layyah, Pakistan
| | - Kamran Ikram
- Department of Agricultural Engineering, Khwaja Fareed University of Engineering and Information Technology Rahim Yar Khan
| | - Aziz Ullah
- Department of Plant Breeding and Genetics, University of Sargodha, Pakistan
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Khadka K, Earl HJ, Raizada MN, Navabi A. A Physio-Morphological Trait-Based Approach for Breeding Drought Tolerant Wheat. FRONTIERS IN PLANT SCIENCE 2020; 11:715. [PMID: 32582249 PMCID: PMC7286286 DOI: 10.3389/fpls.2020.00715] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 05/06/2020] [Indexed: 05/18/2023]
Abstract
In the past, there have been drought events in different parts of the world, which have negatively influenced the productivity and production of various crops including wheat (Triticum aestivum L.), one of the world's three important cereal crops. Breeding new high yielding drought-tolerant wheat varieties is a research priority specifically in regions where climate change is predicted to result in more drought conditions. Commonly in breeding for drought tolerance, grain yield is the basis for selection, but it is a complex, late-stage trait, affected by many factors aside from drought. A strategy that evaluates genotypes for physiological responses to drought at earlier growth stages may be more targeted to drought and time efficient. Such an approach may be enabled by recent advances in high-throughput phenotyping platforms (HTPPs). In addition, the success of new genomic and molecular approaches rely on the quality of phenotypic data which is utilized to dissect the genetics of complex traits such as drought tolerance. Therefore, the first objective of this review is to describe the growth-stage based physio-morphological traits that could be targeted by breeders to develop drought-tolerant wheat genotypes. The second objective is to describe recent advances in high throughput phenotyping of drought tolerance related physio-morphological traits primarily under field conditions. We discuss how these strategies can be integrated into a comprehensive breeding program to mitigate the impacts of climate change. The review concludes that there is a need for comprehensive high throughput phenotyping of physio-morphological traits that is growth stage-based to improve the efficiency of breeding drought-tolerant wheat.
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Affiliation(s)
- Kamal Khadka
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
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Badr A, El-Shazly HH, Tarawneh RA, Börner A. Screening for Drought Tolerance in Maize ( Zea mays L.) Germplasm Using Germination and Seedling Traits under Simulated Drought Conditions. PLANTS (BASEL, SWITZERLAND) 2020; 9:E565. [PMID: 32365550 PMCID: PMC7284379 DOI: 10.3390/plants9050565] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/04/2020] [Revised: 04/19/2020] [Accepted: 04/21/2020] [Indexed: 11/17/2022]
Abstract
Maize is known to be susceptible to drought stress, which negatively affects vegetative growth and biomass production, as well as the formation of reproductive organs and yield parameters. In this study, 27 responsive traits of germination (G) and seedlings growth were evaluated for 40 accessions of the Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) germplasm collection, under no stress and simulated drought stress treatments by 10%, 15%, and 20% of polyethylene glycol (PEG). The three treatments significantly reduced G% and retarded seedlings growth, particularly the 15% and 20% PEG treatments; these two treatments also resulted in a significant increase of abnormal seedlings (AS). The heritability (H2) and correlations of the traits were estimated, and drought tolerance indices (DTIs) were calculated for traits and accessions. The H2 of G% values were reduced, and H2 for AS% increased as the PEG stress increased. Positive correlations were found between most trait pairs, particularly shoot and root traits, with 48 highly significant correlations under no stress and 25 highly significant correlations under the 10% PEG treatments, particularly for shoot and root traits. The medium to high heritability of shoot and root seedling traits provides a sound basis for further genetic analyses. PCA analysis clearly grouped accessions with high DTIs together and the accessions with low DTIs together, indicating that the DTI indicates the stress tolerance level of maize germplasm. However, the resemblance in DTI values does not clearly reflect the origin or taxonomic assignments to subspecies and varieties of the examined accessions.
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Affiliation(s)
- Abdelfattah Badr
- Botany and Microbiology Department, Faculty of Science, Helwan University, Cairo 11790, Egypt
| | - Hanaa H. El-Shazly
- Biological and Geological Sciences Department, Faculty of Education, Ain Shams University, Cairo 11341, Egypt;
| | - Rasha A. Tarawneh
- Gene Bank Department, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Corrensstr. 3, D-06466 Seeland, OT Gatersleben, Germany;
| | - Andreas Börner
- Gene Bank Department, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Corrensstr. 3, D-06466 Seeland, OT Gatersleben, Germany;
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