Variation in the strength of association among pollination systems and floral traits: evolutionary changes in the floral traits of Bornean gingers (Zingiberaceae)

Six new species of Globba L. (Zingiberales, Zingiberaceae) from the Eastern Himalayas and Northeast India

We describe six new species in the genus Globba L.: Globbacorniculata sp. nov., Globbapaschimbengalensis sp. nov., Globbapolymorpha sp. nov., Globbatyrnaensis sp. nov., Globbajanakiae sp. nov., and Globbayadaviana sp. nov. collected from the Indian part of the Eastern Himalayas (West Bengal) and Northeast India. We provide a detailed morphological description of all six species along with photographic plates, distribution maps, and tentative conservation assessments. We also provide a dichotomous identification key for all the Indian Globba species and discuss the newly described species in relation to those that are morphologically similar to them. Finally, we highlight the taxonomic collection challenges in the ecologically sensitive Eastern Himalayas and Northeast regions of India.

Alpine Rhododendron population contractions lead to spatial distribution mismatch with their pollinators under climate change

The effect of global climate change on plant-pollinator interaction is not limited to changes in phenology and richness within communities but also includes the spatial mismatch caused by the inconsistency of geographical distribution changes. Subsequently, the pollinator interaction network may be remodeled or even disrupted. In this study, we simulated the suitable habitat niche of 15 Rhododendron species and their eight pollinator species as well as their overlapping versus geographical mismatch under the current and three future climate change scenarios in 2090s, using MaxEnt. Results showed that the suitable habitat of all Rhododendron species would decrease in 2090s. In particular, 10, 8, and 13 Rhododendron-pollinator assemblages would have a reduced spatial match region under the climate change scenarios, mainly due to the contraction of the suitable habitat of Rhododendron species. The results provide novel insights into the response of plant-pollinator interactions to global warming, useful to prioritize conservation actions of alpine plant ecosystems.

Testing the large genome constraint hypothesis in tropical rhizomatous herbs: life strategies, plant traits and habitat preferences in gingers

Plant species with large genomes tend to be excluded from climatically more extreme environments with a shorter growing season. Species that occupy such environments are assumed to be under natural selection for more rapid growth and smaller genome size (GS). However, evidence for this is available only for temperate organisms. Here, we study the evolution of GS in two subfamilies of the tropical family Zingiberaceae to find out whether species with larger genomes are confined to environments where the vegetative season is longer. We tested our hypothesis on 337 ginger species from regions with contrasting climates by correlating their GS with an array of plant traits and environmental variables. We revealed 16-fold variation in GS which was tightly related to shoot seasonality. Negative correlations of GS with latitude, temperature and precipitation emerged in the subfamily Zingiberoidae, demonstrating that species with larger GS are excluded from areas with a shorter growing season. In the subfamily Alpinioideae, GS turned out to be correlated with the type of stem and light requirements and its members cope with seasonality mainly by adaptation to shady and moist habitats. The Ornstein-Uhlenbeck models suggested that evolution in regions with humid climates favoured larger GS than in drier regions. Our results indicate that climate seasonality exerts an upper constraint on GS not only in temperate regions but also in the tropics, unless species with large genomes find alternative ways to escape from that constraint.

Spike-Stalk Injection Method Causes Extensive Phenotypic and Genotypic Variations for Rice Germplasm

Genetic diversities or favorable genes within distantly related species are the important resources for crop genetic improvement and germplasm innovation. Spike-Stalk injection method (SSI) has long been applied in rice genetic improvement by directly introducing genetic materials from non-mating donor species, while its inheritance patterns and the underlying mechanisms are poorly elucidated. In this study, a rice variant ERV1 with improved yield-related traits was screened out in the way of introducing genomic DNA of Oryza eichingeri (2n=24, CC genome) into RH78 (Oryza sativa L. 2n=24, AA genome) using SSI method. Genome-wide comparison revealed that the genomic heterozygosity of ERV1 was approximately 8-fold higher than RH78. Restriction-site associated DNA sequencing technology (RAD-seq) and association analysis of the ERV1 inbred F2 population identified 5 quantitative trait loci (QTLs) regions responsible for these yield-related traits, and found that genomic heterozygosity of ERV1 inbred lines was significantly lower than ERV1, while spontaneous mutation rate of the ERV1 inbred lines was significantly higher than ERV1. Our results preliminarily uncovered the inheritance patterns of SSI variant rice, and the potential genomic regions for traits changes, which yielded novel insights into the mechanisms of SSI method, and may accelerate our understanding of plant genome evolution, domestication, and speciation in nature.

Examination of Genomic and Transcriptomic Alterations in a Morphologically Stable Line, MU1, Generated by Intergeneric Pollination

Interspecific hybridization creates genetic variation useful for crop improvement. However, whether pollen from a different genus affects the genomic stability and/or transcriptome of the recipient species during intergeneric pollination has not been investigated. Here, we crossed japonica rice cv. Z12 with the maize accession B73 (pollen donor) and obtained a morphologically stable line, MU1, exhibiting moderate dwarfism, higher tiller number, and increased grain weight compared with Z12. To reveal the genetic basis of these morphological changes in MU1, we performed whole-genome resequencing of MU1 and Z12. Compared with Z12, MU1 showed 107,250 single nucleotide polymorphisms (SNPs) and 23,278 insertion/deletions (InDels). Additionally, 5'-upstream regulatory regions (5'UTRs) of 429 and 309 differentially expressed genes (DEGs) in MU1 contained SNPs and InDels, respectively, suggesting that a subset of these DEGs account for the variation in 5'UTRs. Transcriptome analysis revealed 2190 DEGs in MU1 compared with Z12. Genes up-regulated in MU1 were mainly involved in photosynthesis, generation of precursor metabolites, and energy and cellular biosynthetic processes; whereas those down-regulated in MU1 were involved in plant hormone signal transduction pathway and response to stimuli and stress processes. Quantitative PCR (qPCR) further identified the expression levels of the up- or down-regulated gene in plant hormone signal transduction pathway. The expression level changes of plant hormone signal transduction pathway may be significant for plant growth and development. These findings suggest that mutations caused by intergeneric pollination could be the important reason for changes of MU1 in agronomic traits.

Ecological fitting is a sufficient driver of tight interactions between sunbirds and ornithophilous plants

Plant-bird pollination interactions evolved independently on different continents. Specific adaptations can lead to their restriction when potential partners from distant evolutionary trajectories come into contact. Alternatively, these interactions can be enabled by convergent evolution and subsequent ecological fitting.We studied the interactions between New World plants from the genus Heliconia, Asian plants of genus Etlingera and African sunbirds on a local farm in Cameroon. Heliconia spp. evolved together with hummingbirds and Etlingera spp. with spiderhunters -an oriental subgroup of the sunbird family.Sunbirds fed on all studied plants and individual plant species were visited by a different sunbird spectrum. We experimentally documented a higher number of germinated pollen grains in sunbird-visited flowers of Etlingera spp. For Heliconia spp., this experiment was not successful and pollen tubes were rarely observed, even in hand-pollinated flowers, where enough pollen was deposited. The analyses of contacts with plant reproductive organs nevertheless confirmed that sunbirds are good pollen vectors for both Heliconia and Etlingera species.Our study demonstrated a high ecological fit between actors of distinct evolutionary history and the general validity of bird-pollination syndrome. We moreover show that trait matching and niche differentiation are important ecological processes also in semi-artificial plant-pollinator systems.

Evidence for passerine bird pollination in Rhododendron species

When insect activity is limited at low temperature, birds may be comparatively more important pollinators than insects for flowering plants. It has been thought that many large-flowered Rhododendron species are pollinated by local birds in the Himalayan regions because most of these species flower in spring at high elevation with cool atmospheric temperature. However, experimental evidence for the role of bird pollination in this hyperdiverse genus remains scarce. To examine the role of birds and insects in pollination, we observed floral visitors to 15 Rhododendron species with different floral sizes and abundant flowering individuals in the eastern Himalayas, Southwest China. To examine the role of birds and insects in female reproductive success in each species, cages were used to exclude birds but not insects from visiting flowers and net bags were used to exclude all floral visitors. Inflorescences where visitation was excluded did not produce fruits in any of the Rhododendron species, indicating that sexual reproduction in these species depended on pollinator visitation. Bird visits were generally less frequent than bee visits in the studied species. However, in the nine species on which bird visitors were observed, fruit and/or seed set were greatly reduced in inflorescences caged to exclude birds but not bees, compared to open-pollinated inflorescences. In the other six species on which bird visitation was not observed, fruit and seed set did not differ significantly between caged and open inflorescences except in one species (R. wardii). Manipulations to achieve selective exclusion of visitors demonstrated that birds could be effective pollinators for 10 out of 15 studied Rhododendron species in the eastern Himalayas. Floral characteristics of these Rhododendron species and weather conditions might favour the evolution of bird pollination systems in the East Himalayas.

Low flower-size variation in bilaterally symmetrical flowers: Support for the pollination precision hypothesis

PREMISE OF THE STUDY

The evolutionary shift from radial to bilateral symmetry in flowers is generally associated with the evolution of low flower-size variation. This phenomenon supports the hypothesis that the lower size variation in bilateral flowers can be attributed to low pollinator diversity. In this study, we propose two other hypotheses to explain low flower-size variation in bilateral symmetrical flowers. To test the three hypotheses, we examined the relative importance of pollinator diversity, composition, and bilateral symmetry itself as selective forces on low flower-size variation.

METHODS

We examined pollinator diversity and composition and flower-size variation for 36 species in a seminatural ecosystem with high bee richness and frequent lepidopteran visitation.

KEY RESULTS

Bilateral flowers were more frequently visited than radial flowers by larger bees, but functional-group diversity of the pollinators did not differ between symmetry types. Although bilateral flowers had significantly lower flower-size variation than radial flowers, flower-size variation did not vary with pollinator diversity and composition but was instead related to bilateral symmetry.

CONCLUSIONS

Our results suggest that the lower size variation in bilateral flowers might have evolved under selection favoring the control of pollinator behavior on flowers to enhance the accurate placement of pollen on the body of the pollinator, independent of pollinator type. Because of the limited research on this issue, future work should be conducted in various types of plant-pollinator communities worldwide to further clarify the issue.

The concrete evidence of flexistyly in Plagiostachys: pollination biology of a wild ginger on Hainan Island, China

Flexistyly in Plagiostachys was first reported by Takano et al., while they provided no detailed study on pollination biology and breeding system. In this study, we tested this suspicion in one species of Plagiostachys (Plagiostachys austrosinensis). Field observations suggested that flexistyly was present in this species, and stigmatic behavior was similar to that reported for Alpinia and Amomum species. Two phenotypes (anaflexistylous and cataflexistylous) occurred in a ratio of 1:1 in natural populations. Anthesis began around 1530-1600 h and lasted for about 24 h. Pollen viability and stigma receptivity remained high throughout the flowering process. Mean nectar volume (4.15-11.30 μL) and mean sugar concentration (>32%) also remained at a high level during the flowering process. No fruit set occurred in unpollinated bagged plants. Two pollinators (Bombus pyrosoma and Vespidae spp.) and one pollen robber (Mutillidae spp.) were found as flower visitors. Fruit set following self-pollination and cross-pollination did not differ significantly in the cataflexistylous morph. Partial self-incompatibility was apparent in the anaflexistylous morph. These results provide the concrete evidence of flexistyly in Plagiostachys and a more thorough understanding of its evolutionary origin in gingers.

The role of pollinators in floral diversification in a clade of generalist flowers

Pollinator-mediated evolutionary divergence has seldom been explored in generalist clades because it is assumed that pollinators in those clades exert weak and conflicting selection. We investigate whether pollinators shape floral diversification in a pollination generalist plant genus, Erysimum. Species from this genus have flowers that appeal to broad assemblages of pollinators. Nevertheless, we recently reported that it is possible to sort plant species into pollination niches varying in the quantitative composition of pollinators. We test here whether floral characters of Erysimum have evolved as a consequence of shifts among pollination niches. For this, we quantified the evolutionary lability of the floral traits and their phylogenetic association with pollination niches. As with pollination niches, Erysimum floral traits show weak phylogenetic signal. Moreover, floral shape and color are phylogenetically associated with pollination niche. In particular, plants belonging to a pollination niche dominated by long-tongued large bees have lilac corollas with parallel petals. Further analyses suggest, however, that changes in color preceded changes in pollination niche. Pollinators seem to have driven the evolution of corolla shape, whereas the association between pollination niche and corolla color has probably arisen by lilac-flowered Erysimum moving toward certain pollination niches for other adaptive reasons.

Floral specialization and angiosperm diversity: phenotypic divergence, fitness trade-offs and realized pollination accuracy

Plant reproduction by means of flowers has long been thought to promote the success and diversification of angiosperms. It remains unclear, however, how this success has come about. Do flowers, and their capacity to have specialized functions, increase speciation rates or decrease extinction rates? Is floral specialization fundamental or incidental to the diversification? Some studies suggest that the conclusions we draw about the role of flowers in the diversification and increased phenotypic disparity (phenotypic diversity) of angiosperms depends on the system. For orchids, for example, specialized pollination may have increased speciation rates, in part because in most orchids pollen is packed in discrete units so that pollination is precise enough to contribute to reproductive isolation. In most plants, however, granular pollen results in low realized pollination precision, and thus key innovations involving flowers more likely reflect reduced extinction rates combined with opportunities for evolution of greater phenotypic disparity (phenotypic diversity) and occupation of new niches. Understanding the causes and consequences of the evolution of specialized flowers requires knowledge of both the selective regimes and the potential fitness trade-offs in using more than one pollinator functional group. The study of floral function and flowering-plant diversification remains a vibrant evolutionary field. Application of new methods, from measuring natural selection to estimating speciation rates, holds much promise for improving our understanding of the relationship between floral specialization and evolutionary success.

Genomewide variation in an introgression line of rice-Zizania revealed by whole-genome re-sequencing

BACKGROUND

Hybridization between genetically diverged organisms is known as an important avenue that drives plant genome evolution. The possible outcomes of hybridization would be the occurrences of genetic instabilities in the resultant hybrids. It remained under-investigated however whether pollination by alien pollens of a closely related but sexually "incompatible" species could evoke genomic changes and to what extent it may result in phenotypic novelties in the derived progenies.

METHODOLOGY/PRINCIPAL FINDINGS

In this study, we have re-sequenced the genomes of Oryza sativa ssp. japonica cv. Matsumae and one of its derived introgressant RZ35 that was obtained from an introgressive hybridization between Matsumae and Zizanialatifolia Griseb. in general, 131 millions 90 base pair (bp) paired-end reads were generated which covered 13.2 and 21.9 folds of the Matsumae and RZ35 genomes, respectively. Relative to Matsumae, a total of 41,724 homozygous single nucleotide polymorphisms (SNPs) and 17,839 homozygous insertions/deletions (indels) were identified in RZ35, of which 3,797 SNPs were nonsynonymous mutations. Furthermore, rampant mobilization of transposable elements (TEs) was found in the RZ35 genome. The results of pathogen inoculation revealed that RZ35 exhibited enhanced resistance to blast relative to Matsumae. Notably, one nonsynonymous mutation was found in the known blast resistance gene Pid3/Pi25 and real-time quantitative (q) RT-PCR analysis revealed constitutive up-regulation of its expression, suggesting both altered function and expression of Pid3/Pi25 may be responsible for the enhanced resistance to rice blast by RZ35.

CONCLUSIONS/SIGNIFICANCE

Our results demonstrate that introgressive hybridization by Zizania has provoked genomewide, extensive genomic changes in the rice genome, and some of which have resulted in important phenotypic novelties. These findings suggest that introgressive hybridization by alien pollens of even a sexually incompatible species may represent a potent means to generate novel genetic diversities, and which may have played relevant roles in plant evolution and can be manipulated for crop improvements.