Cave morphology, microclimate and abundance of five cave predators from the Monte Albo (Sardinia, Italy)

Four years monitoring of the endangered European plethodontid salamanders

The ongoing biodiversity crisis is strongly threatening amphibians, mostly because of their peculiar physiology, their sensitivity to climate change and the spread of diseases. Effective monitoring involving assessments of pressure effects across time and estimation of population trends play a key role in mitigating amphibian decline. To improve implementation of standardized protocols and conservation efforts, we present here a dataset related to one of the amphibian genera whose onservation status is considered the most declining according to the IUCN. We report information on 66 populations of the endangered European cave salamanders, genus Speleomantes, that was collected through a standardized monitoring along a four-year period (2021-2024). Demographics data of the populations and fitness-related data of single individuals are reported. Furthermore, we include 3,836 high quality images of individuals that can allow to perform studies aiming to assess the phenotypic variability within the genus, and to perform long-term capture-mark-recaptured studies.

Inferring on Speleomantes Foraging Behavior from Gut Contents Examination

We here provide the first comprehensive analysis and discussion on prey consumed by the European cave salamanders of the genus Speleomantes. Our study stems from the need to shed light on the still unknown foraging behavior adopted by Speleomantes cave salamanders. Starting from the published datasets on gut contents from all Speleomantes species (including hybrids), we here discuss additional information (i.e., species ecology, lower taxonomic level), which were systematically omitted from those data sets. We analyzed a data set consisting of 17,630 records from 49 categories of consumed prey recognized from gut contents of 2060 adults and juveniles Speleomantes. Flying prey accounted for more than 58% of the prey items, while elongated crawling prey accounted for no more than 16% of the diet within a single population. Among the total recognized prey items, only three can be surely ascribed to the group of strictly-cave species (i.e., troglobites), meaning that European cave salamanders mostly forage in surface environment, and therefore represent one of the major drivers of allochthonous organic matter in subterranean environments. Some of the consumed prey seemed to be aquatic, allowing us to hypothesize whether Speleomantes are able to catch prey from a shallow body water. Furthermore, European cave salamanders possess the ability to prey upon taxa characterized by particular anti-predator defenses, while morphological constraints seem to be the most important limit to prey consumption. For each specific case, we provide insights and propose hypotheses concerning the foraging behavior that need to be tested to properly understand the foraging behavior of this cryptic salamanders.

Monitoring of the Endangered Cave Salamander Speleomantes sarrabusensis

In this study, we performed the first monitoring activities on one of the most endangered amphibians in Europe, the Sette Fratelli cave salamander Speleomantes sarrabusensis. The data presented here are derived from two monitoring activities aiming to assess the status and abundance of four populations of S. sarrabusensis. With the first monitoring, we surveyed the well-known population occurring within artificial springs during the period 2015-2018, providing monthly data on the number of active individuals. With the second monitoring performed during spring to early summer of 2022, we surveyed four populations at three time points (the one from artificial springs and three from forested areas) and we provided the first estimation of the populations' abundance. Furthermore, we analyzed for the first time the stomach contents from a population of S. sarrabusensis only occurring in forested environments. With our study, we provided the first information on the abundance of different populations of S. sarrabusensis, representing the starting point for future status assessments for this endangered species.

Towards evidence-based conservation of subterranean ecosystems

Subterranean ecosystems are among the most widespread environments on Earth, yet we still have poor knowledge of their biodiversity. To raise awareness of subterranean ecosystems, the essential services they provide, and their unique conservation challenges, 2021 and 2022 were designated International Years of Caves and Karst. As these ecosystems have traditionally been overlooked in global conservation agendas and multilateral agreements, a quantitative assessment of solution-based approaches to safeguard subterranean biota and associated habitats is timely. This assessment allows researchers and practitioners to understand the progress made and research needs in subterranean ecology and management. We conducted a systematic review of peer-reviewed and grey literature focused on subterranean ecosystems globally (terrestrial, freshwater, and saltwater systems), to quantify the available evidence-base for the effectiveness of conservation interventions. We selected 708 publications from the years 1964 to 2021 that discussed, recommended, or implemented 1,954 conservation interventions in subterranean ecosystems. We noted a steep increase in the number of studies from the 2000s while, surprisingly, the proportion of studies quantifying the impact of conservation interventions has steadily and significantly decreased in recent years. The effectiveness of 31% of conservation interventions has been tested statistically. We further highlight that 64% of the reported research occurred in the Palearctic and Nearctic biogeographic regions. Assessments of the effectiveness of conservation interventions were heavily biased towards indirect measures (monitoring and risk assessment), a limited sample of organisms (mostly arthropods and bats), and more accessible systems (terrestrial caves). Our results indicate that most conservation science in the field of subterranean biology does not apply a rigorous quantitative approach, resulting in sparse evidence for the effectiveness of interventions. This raises the important question of how to make conservation efforts more feasible to implement, cost-effective, and long-lasting. Although there is no single remedy, we propose a suite of potential solutions to focus our efforts better towards increasing statistical testing and stress the importance of standardising study reporting to facilitate meta-analytical exercises. We also provide a database summarising the available literature, which will help to build quantitative knowledge about interventions likely to yield the greatest impacts depending upon the subterranean species and habitats of interest. We view this as a starting point to shift away from the widespread tendency of recommending conservation interventions based on anecdotal and expert-based information rather than scientific evidence, without quantitatively testing their effectiveness.

Updating salamander datasets with phenotypic and stomach content information for two mainland Speleomantes

European plethodontid salamanders (genus Speleomantes; formerly Hydromantes) are a group of eight strictly protected amphibian species which are sensitive to human-induced environmental changes. Long-term monitoring is highly recommended to evaluate their status and to assess potential threats. Here we used two low-impact methodologies to build up a large dataset on two mainland Speleomantes species (S. strinatii and S. ambrosii), which represents an update to two previously published datasets, but also includes several new populations. Specifically, we provide a set of 851 high quality images and a table gathering stomach contents recognized from 560 salamanders. This dataset offers the opportunity to analyse phenotypic traits and stomach contents of eight populations belonging to two Speleomantes species. Furthermore, the data collection performed over different periods allows to expand the potential analyses through a wide temporal scale, allowing long-term studies.

Measurement(s)	Gastric Content • Image
Technology Type(s)	light microscopy • Digital Photography
Sample Characteristic - Organism	Speleomantes • Hydromantes
Sample Characteristic - Environment	Subterranean • karst cave • mine
Sample Characteristic - Location	Italy • Region of Liguria • Municipality of Genova • Province of La Spezia

Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.14346176

Collecting eco-evolutionary data in the dark: Impediments to subterranean research and how to overcome them

Caves and other subterranean habitats fulfill the requirements of experimental model systems to address general questions in ecology and evolution. Yet, the harsh working conditions of these environments and the uniqueness of the subterranean organisms have challenged most attempts to pursuit standardized research.Two main obstacles have synergistically hampered previous attempts. First, there is a habitat impediment related to the objective difficulties of exploring subterranean habitats and our inability to access the network of fissures that represents the elective habitat for the so-called "cave species." Second, there is a biological impediment illustrated by the rarity of most subterranean species and their low physiological tolerance, often limiting sample size and complicating laboratory experiments.We explore the advantages and disadvantages of four general experimental setups (in situ, quasi in situ, ex situ, and in silico) in the light of habitat and biological impediments. We also discuss the potential of indirect approaches to research. Furthermore, using bibliometric data, we provide a quantitative overview of the model organisms that scientists have exploited in the study of subterranean life.Our over-arching goal is to promote caves as model systems where one can perform standardized scientific research. This is important not only to achieve an in-depth understanding of the functioning of subterranean ecosystems but also to fully exploit their long-discussed potential in addressing general scientific questions with implications beyond the boundaries of this discipline.

Planarians, a Neglected Component of Biodiversity in Groundwaters

Underground waters are still one of the most important sources of drinking water for the planet. Moreover, the fauna that inhabits these waters is still little known, even if it could be used as an effective bioindicator. Among cave invertebrates, planarians are strongly suited to be used as a study model to understand adaptations and trophic web features. Here, we show a systematic literature review that aims to investigate the studies done so far on groundwater-dwelling planarians. The research was done using Google Scholar and Web of Science databases. Using the key words “Planarian cave” and “Flatworm Cave” we found 2273 papers that our selection reduced to only 48, providing 113 usable observations on 107 different species of planarians from both groundwaters and springs. Among the most interesting results, it emerged that planarians are at the top of the food chain in two thirds of the reported caves, and in both groundwaters and springs they show a high variability of morphological adaptations to subterranean environments. This is a first attempt to review the phylogeny of the groundwater-dwelling planarias, focusing on the online literature. The paucity of information underlines that scarce attention has been dedicated to these animals. Further revisions, including old papers and books, not available online will be necessary.

Faunal diversity of an insular crepuscular cave of Goa, India

This study is the first attempt to document troglofaunal diversity of crepuscular cave ecosystem from the state of Goa.  Twelve faunal species (seven invertebrates and five vertebrates) have been documented from an insular crepuscular cave which measures 18.62m in floor length and shows a transition of light and hygrothermal profile between its entrance and dead end.  Absence of primary producers, thermal constancy, high humidity, poor ventilation, and competitive exclusion due to limited food resources restricts the faunal diversity of this cave; though trophic linkages are interesting yet speculative, as is typical of subterranean ecosystem.  Among the macro-invertebrates, cavernicolous Whip Spider is a significant species here; whereas the important vertebrates encountered are the Fungoid frog and the Indian Cricket frog, besides roosts of the Rufous Horseshoe bat.  Eco-energetic subsidy, possibly offered by crickets and bats that regularly feed outside this oligotrophic cave ecosystem is discussed.  The need to document the unique and vulnerable troglofauna of this sensitive ecosystem from the conservation perspective is highlighted.   

Are the Neglected Tipuloidea Crane Flies (Diptera) an Important Component for Subterranean Environments?

Usually, biospeleological studies focus on cave-specialist taxa showing strong adaptation to the subterranean environment, as their unusual morphological and ecological features represent intriguing case studies. On the other hand, species occurring in subterranean environments but without marked adaptations have been generally overlooked, probably because they are thought to be accidental and not very important for the ecosystem. Particularly exemplificative is the case of Tipuloidea crane flies (Diptera), which although abundant, are rarely considered in biospeleological studies. Here, by analyzing the crane fly occupancy, we observed that individuals occur within the shallowest areas of subterranean environments throughout the year, with a peak of presence during hot season. Crane flies occupy dark and warm areas close to the connection with surface and with smoother walls. Furthermore, we observed that the presence of crane flies is positively related to the abundance and the richness of cave predators, highlighting their importance for the sustainment of the local community. With this study we aim to stimulate future researches on these important, but still neglected cave species.

A preliminary survey of the abundance, diversity and distribution of terrestrial macroinvertebrates of Gcwihaba cave, northwest Botswana

Inventories of cave species and in-depth understanding of cave ecosystems are essential for informing conservation approaches for the unique and vulnerable cave fauna. Gcwihaba cave is the largest cave in Botswana but its ecology is poorly understood. This study set out to provide the first quantitative survey of the cave’s terrestrial macroinvertebrates. Macroinvertebrates were collected from sample sites at 10 m intervals into the cave from the cave entrance. At each site, macroinvertebrates on the cave floor were collected by quadrat sampling while macroinvertebrate from cave walls were collected by visual opportunistic searches. Moisture content, pH and electrical conductivity of the cave floor substrate were measured at each site to examine the influence of the floor properties on the distribution of macroinvertebrates on the cave floor. Twelve species in 10 families and 8 orders of terrestrial macroinvertebrates were collected. The occurrence of taxa varied across the sites, with most taxa occurring in the light and twilight sectors of the cave (within 30 m), whereas the dark sector (beyond 30 m) was dominated by cave cockroaches (Gyna sp.). The abundance of the cave cockroaches, darkling beetles (Tenebrionidae, Tenebrio sp.) and cave wasps (Sphecidae) positively correlated with floor substrate of high moisture content and high electrical conductivity, which became increasingly common with distance into the cave. The abundance of other taxa from the cave floor positively correlated with a floor substrate of high pH and low moisture, which was common near the cave entrance.

Photographic database of the European cave salamanders, genus Hydromantes

European Hydromantes are a group of eight salamander species often occurring in subterranean habitats, which are a difficult environment to explore. All Hydromantes are strictly protected species and thus, low-impact methodologies to study these salamanders are strongly needed. Here we used a photographic technique to produce a large dataset of European Hydromantes, providing standardised pictures of 1,052 individuals belonging to the eight species, including hybrids as well. With our methodology we were able to reduce the handling time of individuals, and produce high quality pictures useful to investigate multiple life traits of these endangered species. Furthermore, the standardised photos provided here can be used for future comparisons of individuals from the surveyed populations.

Cave Communities: From the Surface Border to the Deep Darkness

The discipline of subterranean biology has provided us incredible information on the diversity, ecology and evolution of species living in different typologies of subterranean habitats. However, a general lack of information on the relationships between cave species still exists, leaving uncertainty regarding the dynamics that hold together cave communities and the roles of specific organisms (from the least to the most adapted species) for the community, as well as the entire ecosystem. This Special Issue aims to stimulate and gather studies which are focusing on cave communities belonging to all different typologies of subterranean habitats, with the overarching goal to corroborate the key role of the subterranean biology in ecological and evolutionary studies.

Do Salamanders Limit the Abundance of Groundwater Invertebrates in Subterranean Habitats?

Several species of surface salamanders exploit underground environments; in Europe, one of the most common is the fire salamander (Salamandra salamandra). In this study, we investigated if fire salamander larvae occurring in groundwater habitats can affect the abundance of some cave-adapted species. We analyzed the data of abundance of three target taxa (genera Niphargus (Amphipoda; Niphargidae), Monolistra (Isopoda; Sphaeromatidae) and Dendrocoelum (Tricladida; Dedrocoelidae)) collected in 386 surveys performed on 117 sites (pools and distinct subterranean stream sectors), within 17 natural and 24 artificial subterranean habitats, between 2012 and 2019. Generalized linear mixed models were used to assess the relationship between target taxa abundance, fire salamander larvae occurrence, and environmental features. The presence of salamander larvae negatively affected the abundance of all the target taxa. Monolistra abundance was positively related with the distance from the cave entrance of the sites and by their surface. Our study revealed that surface salamanders may have a negative effect on the abundance of cave-adapted animals, and highlited the importance of further investigations on the diet and on the top-down effects of salamanders on the subterranean communities.