Checklist of the freshwater fishes of Colombia: a Darwin Core alternative to the updating problem

Biogeography of Greater Antillean freshwater fishes, with a review of competing hypotheses

In biogeography, vicariance and long-distance dispersal are often characterised as competing scenarios. However, they are related concepts, both relying on collective geological, ecological, and phylogenetic evidence. This is illustrated by freshwater fishes, which may immigrate to islands either when freshwater connections are temporarily present and later severed (vicariance), or by unusual means when ocean gaps are crossed (long-distance dispersal). Marine barriers have a strong filtering effect on freshwater fishes, limiting immigrants to those most capable of oceanic dispersal. The roles of vicariance and dispersal are debated for freshwater fishes of the Greater Antilles. We review three active hypotheses [Cretaceous vicariance, Greater Antilles-Aves Ridge (GAARlandia), long-distance dispersal] and propose long-distance dispersal to be an appropriate model due to limited support for freshwater fish use of landspans. Greater Antillean freshwater fishes have six potential source bioregions (defined from faunal similarity): Northern Gulf of México, Western Gulf of México, Maya Terrane, Chortís Block, Eastern Panamá, and Northern South America. Faunas of the Greater Antilles are composed of taxa immigrating from many of these bioregions, but there is strong compositional disharmony between island and mainland fish faunas (>90% of Antillean species are cyprinodontiforms, compared to <10% in Northern Gulf of México and Northern South America, and ≤50% elsewhere), consistent with a hypothesis of long-distance dispersal. Ancestral-area reconstruction analysis indicates there were 16 or 17 immigration events over the last 51 million years, 14 or 15 of these by cyprinodontiforms. Published divergence estimates and evidence available for each immigration event suggests they occurred at different times and by different pathways, possibly with rafts of vegetation discharged from rivers or washed to sea during storms. If so, ocean currents likely provide critical pathways for immigration when flowing from one landmass to another. On the other hand, currents create dispersal barriers when flowing perpendicularly between landmasses. In addition to high salinity tolerance, cyprinodontiforms collectively display a variety of adaptations that could enhance their ability to live with rafts (small body size, viviparity, low metabolism, amphibiousness, diapause, self-fertilisation). These adaptations likely also helped immigrants establish island populations after arrival and to persist long term thereafter. Cichlids may have used a pseudo bridge (Nicaragua Rise) to reach the Greater Antilles. Gars (Lepisosteidae) may have crossed the Straits of Florida to Cuba, a relatively short crossing that is not a barrier to gene flow for several cyprinodontiform immigrants. Indeed, widespread distributions of Quaternary migrants (Cyprinodon, Gambusia, Kryptolebias), within the Greater Antilles and among neighbouring bioregions, imply that long-distance dispersal is not necessarily inhibitory for well-adapted species, even though it appears to be virtually impossible for all other freshwater fishes.

Fishes (Actinopterygii) of the rapids and associated environments in the lower Vaupés River Basin: an undiscovered Colombian Amazon diversity

The Vaupés River stands out as one of the few within the Amazon basin due to its numerous rapids. These riverine fast-flowing sections not only provide habitat to highly specialized fishes but also function as natural barriers hindering the movement of fish along its course. During a fish-collecting expedition in the lower Vaupés River basin in Colombia, 95 species were registered belonging to 30 families and seven orders. Despite recent inventories in the region, our comprehensive sampling efforts particularly focused on the rapids and associated rheophilic fauna, allowing us to contribute the first records of four fish species in Colombia (Mylopluslucienae Andrade, Ota, Bastos & Jégu, 2016, Tometesmakue Jégu, Santos & Jégu, 2002, also first record of the genus, Leptodoraspraelongus (Myers & Weitzman, 1956), and Eigenmanniamatintapereira Peixoto, Dutra & Wosiacki, 2015) and six presumably undescribed species (i.e., Jupiaba sp., Moenkhausia sp., Phenacogaster sp., Bunocephalus sp., Hemiancistrus sp., and Archolaemus sp.). In this study, a commented list of the ichthyofauna of these environments is presented, as well as a photographic catalog of fish species integrated into the CaVFish Project - Colombia.

Taxonomic revision of Sturisoma Swainson, 1838 (Loricariidae: Loricariinae), with descriptions of four new species

A taxonomic revision of Sturisoma is presented. Individuals including both type and non-type specimens of all valid species were examined. Sturisoma was found to comprise 10 valid species: Sturisoma barbatum, Sturisoma brevirostre, Sturisoma graffini, Sturisoma guentheri, Sturisoma lyra, Sturisoma monopelte, Sturisoma nigrirostrum, Sturisoma reisi, Sturisoma rostratum, and Sturisoma tenuirostre. Furthermore, four new species are described: Sturisoma ghazziae, new species, from the Araguaia River, belonging to the Tocantins-Araguaia basin, Central Brazil; Sturisoma careirensia, new species, from the middle Amazon basin, Brazil; Sturisoma rapppydanielae, new species, from the Purus River, Amazon basin, Brazil; and Sturisoma defranciscoi, new species, from the Putumayo and Solimões rivers, upper Amazon basin, Colombia, and Brazil. Sturisoma robustum is confirmed as synonym of S. barbatum, species registered along the Paraguay/Parana/La Plata River basin in Argentina, Brazil, and Paraguay. New records were found for S. nigrirostrum as present in the upper Amazon basin, in the Yavari River, Brazil, in addition to its already known locality, the Ucayali River, Peru. The distribution of the type species of the genus S. rostratum is limited to the lower portion of the Amazon basin in the Araguaia, Maranhão, Mearim, Tapajós, and Tocantins rivers and its affluents, Brazil, in contrast to the assumed widespread distribution across the main basins of South America, as previously proposed for the species; the Mearim River is a new record for the species. Updated diagnoses and descriptions are offered for species of Sturisoma, in addition to distribution maps and an identification key for the species.

Draft genome assembly for the colombian freshwater bocachico fish, Prochilodus magdalenae

We report the first draft genome assembly for Prochilodus magdalenae, the leading representative species of the Prochilodontidae family in Colombia. This 1.2-Gb assembly, with a GC content of 42.0% and a repetitive content of around 31.0%, is in the range of previously reported characid species genomes. Annotation identified 34,725 nuclear genes, and BUSCO completeness value was 94.9%. Gene ontology and primary metabolic pathway annotations indicate similar gene profiles for P. magdalenae and the closest species with annotated genomes: blind cave fish (Astyanax mexicanus) and red piranha (Pygocentrus nattereri). A comparative analysis showed similar genome traits to other characid species. The fully sequenced and annotated mitochondrial genome reproduces the taxonomic classification of P. magdalenae and confirms the low mitochondrial genetic divergence inside the Prochilodus genus. Phylogenomic analysis, using nuclear single-copy orthologous genes, also confirmed the evolutionary position of the species. This genome assembly provides a high-resolution genetic resource for sustainable P. magdalenae management in Colombia and, as the first genome assembly for the Prochilodontidae family, will contribute to fish genomics throughout South America.

A new species of Astronotus (Teleostei, Cichlidae) from the Orinoco River and Gulf of Paria basins, northern South America

Based on morphological and molecular analysis of Astronotus species, a new species is described from the Orinoco River and Gulf of Paria basins in Venezuela and Colombia. Morphologically, it differs from Astronotuscrassipinnis and Astronotusocellatus in pre-orbital depth, caudal peduncle depth, head width, and caudal peduncle length, with significant differences in average percentage values. Osteologically, it differs from the two described species by lacking a hypurapophysis on the parahypural bone (hypural complex) and having two or three supraneural bones. Another characteristic that helps diagnose the new species is the morphology of the sagitta otolith, which is oval with crenulated dorsal and ventral margins and a rounded posterior edge. Genetically, the new species is distinct from all the other lineages previously proposed for the genus, delimited by five single locus species delimitation methods, and also has unique diagnostic nucleotides. Phylogenetic analyses support the monophyly of the new species as well as all other species/lineages. Astronotus species have considerable genetic, anatomical, and sagitta otolith shape differences, but have few significant traditional morphometric and meristic differences, because there is high variability in counts of spines, soft dorsal-fin rays, and lateral-line scales. It is clear that this new species is genetically and anatomically differentiated from all other species within the genus, and deserves recognition as a new valid species.

Checklist of the mammals (Mammalia) of Colombia

La actualización de la lista de especies presentes en un país es una tarea continua que llena vacíos de información y apoya la toma de decisiones. En los últimos cinco años, ha habido un aumento del número de especies de mamíferos descritas como nuevas en Colombia, así como primeros registros y cambios taxonómicos. Con el fin de actualizar la información de las especies de mamíferos de Colombia, realizamos una revisión exhaustiva de los cambios taxonómicos de las 528 especies registradas en listas previas. Agregamos nuevas especies descritas, así como nuevos registros de especies ya descritas. Discutimos especies cuya presencia ha sido sugerida recientemente en Colombia, pero que no es respaldada por especímenes de museo. La lista actual de mamíferos en Colombia tiene 543 especies, con cuatro descritas en el último año. Esperamos que la lista sea una herramienta apoyar las necesidades de investigación, en especial las extensiones de distribución, los problemas taxonómicos y la conservación de los mamíferos del país. Finalmente, recomendamos que las actualizaciones de la lista sigan estándares nacionales e internacionales como Darwin Core, utilizado por el Repositorio de Información Global sobre Biodiversidad - GBIF, y el Sistema de Información sobre Biodiversidad de Colombia – SiB.

Contribution to a reference library of DNA barcodes of Colombian freshwater fishes

Background

The Barcode of Life initiative was originally motivated by the large number of species, taxonomic difficulties and the limited number of expert taxonomists. Colombia has 1,610 freshwater fish species and comprises the second largest diversity of this group in the world. As genetic information continues to be limited, we constructed a reference collection of DNA sequences of Colombian freshwater fishes deposited in the Ichthyology Collection of the University of Antioquia (CIUA), thus joining the multiple efforts that have been made in the country to contribute to the knowledge of genetic diversity in order to strengthen the inventories of biological collections and facilitate the solution of taxonomic issues in the future.

New information

This study contributes to the knowledge on the DNA barcodes and occurrence records of 96 species of Colombian freshwater fishes. Fifty-seven of the species represented in this dataset were already available in the Barcode Of Life Data System (BOLD System), while 39 correspond to new species to the BOLD System. Forty-nine specimens were collected in the Atrato River Basin and 708 in the Magdalena-Cauca asin during the period 2010-2020. Two species (Loricariichthysbrunneus (Hancock, 1828) and Poeciliasphenops Valenciennes, 1846) are considered exotic to the Atrato, Cauca and Magdalena Basins and four species (Oncorhynchusmykiss (Walbaum, 1792), Oreochromisniloticus (Linnaeus, 1758), Parachromisfriedrichsthalii (Heckel, 1840) and Xiphophorushelleri Heckel, 1848) are exotic to the Colombian hydrogeographic regions. All specimens are deposited in CIUA and have their DNA barcodes made publicly available in the BOLD online database. The geographical distribution dataset can be freely accessed through the Global Biodiversity Information Facility (GBIF).

Divergence times of the Rhoadsia clade (Characiformes: Characidae)

Abstract The family Characidae is the most diverse group of fishes in the Neotropics with challenging systematics. The three genera Carlana, Parastremma, and Rhoadsia, formerly considered the subfamily Rhoadsiinae, are now included in the subfamily Stethaprioninae. Previous phylogenetic analyses did not include all genera of Rhoadsiinae, specifically Parastremma. Here, we estimated the phylogenetic relationships and divergence times of the genera of Rhoadsiinae (the Rhoadsia clade) relative to the most representative genera of the Characidae. We used six molecular markers from the mitochondrial and nuclear genome to estimate the phylogeny and divergence times. We confirmed the monophyly of the Rhoadsia clade. Furthermore, we estimated that the Central American genus Carlana and the western Colombian genus Parastremma diverged approximately 13 Mya (95% HPD 8.36–18.11), consistent with the early-closure estimates of the Isthmus of Panama (~15 Mya). The genus Rhoadsia, endemic to Western Ecuador and Northern Peru, was estimated to originate at around 20 Mya (95% HPD 14.35–25.43), consistent with the Andean uplift (~20 Mya).

Fishes from the Colombian Amazonia region: species composition from the river systems within the rainforest biome

Abstract The Colombian Amazon region is part of the Neotropical rainforest (humid forest biome) covering an area of 483,163 km2 and includes tributaries of both the Amazon and Orinoco River basins. The aquatic ecosystems found there include: rivers and alluvial plains originating in Andean headwaters, on eroded soils of tropical forests in the lowlands, and Guiana Shield formations, comprising a dense fluvial drainage network in the lowlands, with Paleogene/Neogene geological formations (terra firme streams in higher places that don’t usually flood) and Paleozoic (shield streams); and Andean and Guiana Shield streams above 200–250 m a.s.l. We present here an exhaustive compilation of published information, supported by fish collections, consisting of a list of 1104 species distributed in 375 genera, 53 families, and 16 orders. We include occurrence data of these species in each sub-basin. The presence/absence species matrix was analyzed using a dendrogram and non-metric multidimensional scaling (NMDS) analysis to identify patterns of similarity between basins and sub-basins. We evaluated species composition between basins and among the different geological origins using PERMANOVA. The dendrogram shows co-occurrences of 404 species in the two basins. It also shows two clear groupings of the sub-basins of the Amazon (except Guainía-Negro drainages) and those of the Orinoco. Within the Amazon Basin, there are two nodes according to the geological origin: systems of Andean origin and those of the lowlands. The dendrogram results are consistent with the NMDS analysis, which shows a clear grouping according to the connectivity of the basins; the Guainía-Negro is included in the Amazon basin. Species distribution patterns were supported by the PERMANOVA, and differed significantly between basins (F = 4.3, R = 0.26, P = 0.003) and geological origin (F = 3.6, R = 0.23, P = 0.003). The number of species in this study represents almost a fifth of the ichthyofauna of the Neotropics and about a third of that of the Amazon River basin; clearly supporting Colombia’s status among the countries with the greatest diversity of freshwater fish species of the planet. We include here a significant number of new records (75 spp), provide a first approximation of the distribution patterns, and a framework for future biogeographical studies.

P. A new genus of armored catfish (Siluriformes: Loricariidae) from the Greater Amazon, with a review of the species and description of five new species

Abstract A new genus of Hypopopomatinae armored catfish is described from the northern portions of South America, namely the Amazon, Orinoco and Guianan coastal drainages. The new genus is diagnosed from all remaining hypoptopomatines by having the canal cheek plate on the ventral surface of the head posteriorly elongated and contacting the cleithrum, in addition to other features that distinguish the new genus from specific genera. Five new species are described and 18 species currently allocated in Parotocinclus, Hisonotus, and Curculionichthys are transferred to the new genus and rediagnosed. Parotocinclus amazonensis and P. aripuanensis are considered junior synonyms of P. britskii. The secondary sexual dimorphism of the members of the new genus is detailed and illustrated. Morphological characters are used to delimit four phenotypic groups of species that might have phylogenetic significance, which still have to be properly tested. A key to the species is offered and diagnoses, illustrations, and distribution maps are provided for all species.

Repeated colonization of caves leads to phenotypic convergence in catfishes (Siluriformes: Trichomycterus) at a small geographical scale

Across various animal groups, adaptation to the challenging conditions of cave environments has resulted in convergent evolution. We document a Neotropical cavefish system with ample potential to study questions related to convergent adaptation to cave environments at the population level. In the karstic region of the Andes of Santander, Colombia, cave-dwelling catfish in the genus Trichomycterus exhibit variable levels of reduction of eyes and body pigmentation relative to surface congeners. We tested whether cave-dwelling, eye-reduced, depigmented Trichomycterus from separate caves in Santander were the result of a single event of cave colonization and subsequent dispersal, or of multiple colonizations to caves by surface ancestors followed by phenotypic convergence. Using mitochondrial DNA sequences to reconstruct phylogenetic relationships, we found that caves in this region have been colonized independently by two separate clades. Additional events of cave colonization – and possibly recolonization of surface streams – may have occurred in one of the clades, where surface and cave-dwelling populations exhibit shallow differentiation, suggesting recent divergence or divergence with gene flow. We also identify potentially undescribed species and likely problems with the circumscription of named taxa. The system appears promising for studies on a wide range of ecological and evolutionary questions.

Mitochondrial genomes of five Hyphessobrycon tetras and their phylogenetic implications

To date, the taxonomic status and phylogenetic affinities within Hyphessobrycon, even among other genera in Characidae, remain unclear. Here, we determined five new mitochondrial genomes (mitogenomes) of Hyphessobrycon species (H. elachys, H. flammeus, H. pulchripinnis, H. roseus, and H. sweglesi). The mitogenomes were all classical circular structures, with lengths ranging from 16,008 to 17,224 bp. The type of constitutive genes and direction of the coding strand that appeared in the mitogenomes were identical to those of other species in Characidae. The highest value of the Ka/Ks ratio within 13 protein-coding genes (PCGs) was found in ND2 with 0.83, suggesting that they were subject to purifying selection in the Hyphessobrycon genus. Comparison of the control region sequences among seven Hyphessobrycon fish revealed that repeat units differ in length and copy number across different species, which led to sharp differences in mitogenome sizes. Phylogenetic trees based on the 13 PCGs did not support taxonomic relationships, as the Hyphessobrycon fish mixed with those from other genera. These data were combined to explore higher level relationships within Characidae and could aid in the understanding of the evolution of this group.

Ecological niche modeling as an effective tool to predict the distribution of freshwater organisms: The case of the Sabaleta Brycon henni (Eigenmann, 1913)

Ecological niche models (ENMs) aim to recreate the relationships between species and the environments where they occur and allow us to identify unexplored areas in geography where these species might be present. These models have been successfully used in terrestrial organisms but their application in aquatic organisms is still scarce. Recent advances in the availability of species occurrences and environmental information particular to aquatic systems allow the evaluation of these models. This study aims to characterize the niche of the Sabaleta Brycon henni Eigenmann 1913, an endemic fish of the Colombian Andes, using ENMs to predict its geographical distribution across the Magdalena Basin. For this purpose, we used a set of environmental variables specific to freshwater systems in addition to the customary bioclimatic variables, and species' occurrence data to model its potential distribution using the Maximum Entropy algorithm (MaxEnt). We evaluate the relative importance between these two sets of variables, the model's performance, and its geographic overlap with the IUCN map. Both on-site (annual precipitation, minimum temperature of coldest month) and upstream variables (open waters, average minimum temperature of the coldest month and average precipitation seasonality) were included in the models with the highest predictive accuracy. With an area under the curve of 90%, 99% of the species occurrences and 68% of absences correctly predicted, our results support the good performance of ENMs to predict the potential distribution of the Sabaleta and the utility of this tool in conservation and decision-making at the national level.

Development of microsatellite loci and population genetics in the bumblebee catfish species Pseudopimelodus atricaudus and Pseudopimelodus magnus (Siluriformes: Pseudopimelodidae)

ABSTRACT The Neotropical freshwater catfish Pseudopimelodus atricaudus and Pseudopimelodus magnus are two recently discovered species endemic to the Colombian Magdalena-Cauca River basin. In this study, a set of 13 microsatellite loci were developed by using next generation sequence technology to assess the genetic diversity and population structure in P. atricaudus and test for cross-species amplification in P. magnus. Both species exhibited high genetic diversity (P. atricaudus: Na: 9.000 - 9.769 alleles/locus, Ho: 0.760 - 0.804, HE: 0.804 - 0.840; P. magnus: Na: 12.8 - 5.4 alleles/locus, Ho: 0.638 - 0.683, HE: 0.747 - 0.755) compared to the mean levels of genetic diversity reported for Neotropical Siluriformes, and lack of genetic differentiation among sampling sites within the Cauca River (P. atricaudus: F’ST=0.013 - 0.017, P > 0.05, D’est= -0.004 - 0.023, P > 0.05; P. magnus: F’ST= 0.031, P= 0.055; D’est= 0.045, P= 0.058). This work is the first insight on the diversity and the population genetics of species of the family Pseudopimelodidae and provides a framework to further population genetic and conservation analyses needed in this poorly studied family at the microevolutionary level.

The unknown diversity of the genus Characidium (Characiformes: Crenuchidae) in the Chocó biogeographic region, Colombian Andes: Two new species supported by morphological and molecular data

Two new species of Characidium, C. tatama and C. dule, are described from the biogeographic Chocó region in western Colombia. Both new species are supported by both morphological and molecular data. C. tatama from the San Juan River in the Pacific and C. dule from the Atrato River in the Caribbean portion of Colombia are both distributed in the upper and lower portions of these basins. An extensive comparison with other trans- and cis-Andean species of Characidium was made, in addition to species delimitation, using COI sequences by distinct methods (GMYC, ABGD, bPTP).

Two new species of Pseudopimelodus Bleeker, 1858 (Siluriformes: Pseudopimelodidae) from the Magdalena Basin, Colombia

The family Pseudopimelodidae is widely distributed in South America and includes 51 described species organized in seven genera. Only two of four species of the genus Pseudopimelodus have been recorded for the trans-Andean basins of Colombia, Pseudopimelodus bufonius and P. schultzi, whose similarity in external morphology make their identification difficult. We performed a phylogenetic analysis using a fragment of the Cytochrome C Oxidase subunit 1 gene (COI), and analyzed osteological and traditional morphometric characters to study Pseudopimelodus from the Colombian trans-Andean region. Results provided strong support for two clades phylogenetically related to Pseudopimelodus, that showed clear-cut molecular, osteological, and morphometric differences from previously described bumblebee catfishes. Based on these results, we describe two Pseudopimelodus species from the Magdalena-Cauca River Basin: P. magnus sp. nov. with 43-44 vertebrae, dorsal-fin spine with serrations on its anterior margin; lateral margin of transverse process of the fourth vertebra of the Weberian complex forming an acute angle in ventral view and P. atricaudus sp. nov. with 39 vertebrae, dorsal-fin spine smooth on its anterior margin and a dark, vertical band covering 3/4 of the caudal fin with base of rays and tip of caudal-fin lobes hyaline.

Freshwater fish diversity hotspots for conservation priorities in the Amazon Basin

Conserving freshwater habitats and their biodiversity in the Amazon Basin is a growing challenge in the face of rapid anthropogenic changes. We used the most comprehensive fish-occurrence database available (2355 valid species; 21,248 sampling points) and 3 ecological criteria (irreplaceability, representativeness, and vulnerability) to identify biodiversity hotspots based on 6 conservation templates (3 proactive, 1 reactive, 1 representative, and 1 balanced) to provide a set of alternative planning solutions for freshwater fish protection in the Amazon Basin. We identified empirically for each template the 17% of sub-basins that should be conserved and performed a prioritization analysis by identifying current and future (2050) threats (i.e., degree of deforestation and habitat fragmentation by dams). Two of our 3 proactive templates had around 65% of their surface covered by protected areas; high levels of irreplaceability (60% of endemics) and representativeness (71% of the Amazonian fish fauna); and low current and future vulnerability. These 2 templates, then, seemed more robust for conservation prioritization. The future of the selected sub-basins in these 2 proactive templates is not immediately threatened by human activities, and these sub-basins host the largest part of Amazonian biodiversity. They could easily be conserved if no additional threats occur between now and 2050.

Ancient genetic divergence in bumblebee catfish of the genus Pseudopimelodus (Pseudopimelodidae: Siluriformes) from northwestern South America

Pseudopimelodus is a Neotropical genus of bumblebee catfish, composed of four valid species occurring in both trans- and cis-Andean rivers of South America. The orogeny of the Andes has led to diversification in the genus Pseudopimelodus in Colombia. This study analyzed partial sequences of mitochondrial cox1 and nuclear rag2 genes to test the hypothesis that the species, nominally recognized as P. schultzi and P. bufonius in Colombia, correspond to more than two different evolutionary lineages. Results indicate high levels of genetic divergence among individuals of nominal P. schultzi and P. bufonius, from trans- and cis-Andean basins in Colombia. In addition, five divergent lineages of Pseudopimelodus were confidently delimited by using a single-locus species-discovery approach and confirmed by species tree analyses. Additionally, molecular-clock dating showed that most diversification processes in Pseudopimelodus took place during the Miocene, when Andean tectonic evolution was occurring in northwestern South America. The present study provides, for the first time, phylogeographic insight into this Neotropical genus.

A new Hemigrammus from the upper Río Vaupés, Colombia (Characiformes: Characidae), with a discussion on the presence of an enlarged urogenital papilla in the family

Hemigrammus xaveriellus sp. nov. is described from the upper Río Vaupés basin (Amazon basin), Departamento Guaviare, Colombia. It is distinguished from all congeners by the combination of the following characters: presence of a conspicuous, dark, longitudinal midlateral stripe extending along the body; presence of a conspicuous rounded, horizontally elongated humeral blotch anterior to the beginning of the dark midlateral stripe; seven scale rows between the dorsal fin and lateral line (vs. five to six); and five scale rows between the lateral line and pelvic-fin insertion (vs. three to four). The single mature male of He. xaveriellus possessed a well-developed urogenital papilla, an unusual feature among characids. The presence of an enlarged urogenital papilla in the family is discussed, and comments regarding the putative relationships of the new species are presented.

A new troglomorphic species of Trichomycterus (Siluriformes: Trichomycteridae) from north-eastern Colombia, with proposal of a new Trichomycterus subclade and remarks on some nominal species from Colombia

Trichomycterus spectrum is described as a new species from the Alejo cave, drained by the Ranchería River basin, in La Guajira department, north-eastern Colombia, and is the first troglomorphic species described from this region. The new species shows an advanced degree of troglomorphisms expressed as eyes absent, long barbels and body depigmented. Trichomycterus spectrum is diagnosed by the putatively autapomorphic presence of a posterior process at the anterolateral corner of the epioccipital, and is also recognized by the derived presence of a circular foramen on the neural spine of the complex vertebra and the following posterior vertebra, and by the apomorphic presence of a well-developed coracoid bridge, distally expanded, and contacting or almost reaching the lateral margin of the cleithrum. The new species also shows the derived origin of the levator internus 4 on the dorsal surface of the posttemporo-supracleithrum that supports Trichomycterinae monophyly. We also propose a monophyletic subgroup provisionally within Trichomycterus, here named the Trichomycterus taenia species group, which includes species distributed in cis- and trans-Andean drainages in northern South America. The taxonomic status of several recently described nominal species from Colombia is discussed, with several synonymy proposals. RESUMEN: Trichomycterus spectrum es descrito como una especie nueva de la cueva de Alejo, drenada por la cuenca del río Ranchería, en el departamento de La Guajira, noreste de Colombia, y es la primera especie troglomórfica descrita para esta región. La especie nueva exhibe un grado avanzado de troglomorfismos expresado como ojos ausentes, barbillas largas y cuerpo depigmentado. Trichomycterus spectrum es diagnósticado por la presencia putativamente autapomórfica de un proceso posterior en la esquina anterolateral del epióticoy es reconocido también por la presencia derivada de un foramen circular en la espina neural de la vértebra compleja y de la vértebra posterior siguiente, y por la presencia apomórfica de un puente coracoideo bien desarrollado, expandido distalmente y contactando o muy próximo al margen lateral del cleitro. La especie nueva también posee el origen derivado del levator internus 4 sobre la superficie dorsal del posttemporo-supracleitro que soporta la monofilia de Trichomycterinae. También proponemos un subgrupo monofilético provisionalmente dentro de Trichomycterus, denominado aquí como el grupo de especies Trichomycterus taenia, el cual incluye especies distribuidas en cuencas cis y transandinas en el norte de Sudamérica. El estatus taxonómico de varias especies nominales recientemente descritas de Colombia es discutido, con varias propuestas de sinonimia.

A database of freshwater fish species of the Amazon Basin

The Amazon Basin is an unquestionable biodiversity hotspot, containing the highest freshwater biodiversity on earth and facing off a recent increase in anthropogenic threats. The current knowledge on the spatial distribution of the freshwater fish species is greatly deficient in this basin, preventing a comprehensive understanding of this hyper-diverse ecosystem as a whole. Filling this gap was the priority of a transnational collaborative project, i.e. the AmazonFish project - https://www.amazon-fish.com/. Relying on the outputs of this project, we provide the most complete fish species distribution records covering the whole Amazon drainage. The database, including 2,406 validated freshwater native fish species, 232,936 georeferenced records, results from an extensive survey of species distribution including 590 different sources (e.g. published articles, grey literature, online biodiversity databases and scientific collections from museums and universities worldwide) and field expeditions conducted during the project. This database, delivered at both georeferenced localities (21,500 localities) and sub-drainages grains (144 units), represents a highly valuable source of information for further studies on freshwater fish biodiversity, biogeography and conservation.

Checklist of the fishes from Jamari River basin, in areas under influence of dams, Rondônia, Brazil

Abstract: The Madeira River is the most extensive tributary of the Amazon River and has the largest diversity of fishes in the world. On its right bank, the Madeira River receives the Jamari River, in which the first hydroelectric power plant (HPP) in State of Rondônia, Samuel HPP, was built. Besides this, other dams were built in the Jamari River and its tributaries, however, the available information in the scientific literature about the ichthyofaunistic diversity of this basin is rare. This work aims to provide an ichthyofaunistic inventory in a region of the Jamari river basin, in the State of Rondônia, where three small hydropower plants (SHPs) were implemented. The ichthyofauna was sampled in 16 expeditions between August 2015 and December 2018. Gill nets and seine nets were used with different meshes, as well as longlines and cast nets at different times of the day. Additionally, 81 INPA lots of species from the Samuel HPP area of influence were reanalyzed. Fish were identified according to the specialized literature, as well as in consultations with experts of various taxonomic groups. Voucher specimens of the species were cataloged and deposited in the ichthyological collection of the Núcleo de Pesquisas em Limnologia, Ictiologia e Aquicultura (Nupélia) of the Universidade Estadual de Maringá. A total of 230 species were recorded, of which 22 were putative new species, 117 were added to the Jamari River basin and 28 to the Madeira River basin. The continuation of the studies in this section of the Jamari river basin is fundamental for analysis of local impact due to the presence of dams. Moreover, the addition of putative new species to the Madeira River basin indicates gaps in the knowledge of Neotropical ichthyofauna.

A new species of Cyphocharax (Characiformes: Curimatidae) with a horizontal color pattern from the rio Tapajós drainage, Amazon basin, Brazil

ABSTRACT A new species of Cyphocharax is described from the rio Mentaí, a tributary of rio Arapiuns, lower rio Tapajós basin, Pará state, Brazil. The new species can be distinguished from its congeners by the combination of a rounded dark blotch at the caudal peduncle and a pattern of horizontal stripes formed by series of conspicuous dark spots situated over the center of the scales on the lateral and dorsolateral surfaces of the body. The new Cyphocharax is compared with similar congeners as C. helleri, C. multilineatus, and C. pantostictos. Comments on the distribution of C. multilineatus are provided.

Knowing biodiversity: Fishes from the Guareí River basin, a tributary of the Jurumirim reservoir, Paranapanema River, Brazil

Abstract: The Guareí River is a tributary of the Paranapanema River (Brazil), located in the upper portion of the Jurumirim Reservoir. Fish fauna studies in this watershed began in the 2000s, but they were restricted to a few waterbodies. This work conducted a broad survey of the fish fauna in tributary streams and the main channel of the Guareí River. Sampling occurred between February 2017 and November 2018 at 36 sites and using different collection methods. We captured 2,169 specimens belonging to 50 species, 16 families and 6 orders. The species accumulation curve tended to stabilize but indicated that species richness is underestimated. Almost all species are native (46); only three were non-native (Hyphessobrycon eques, Oreochromis niloticus and Poecilia reticulata) and one was undefined (Gymnotus pantanal). Among the native species, two are unknown to science (Bryconamericus aff. iheringii and Hypostomus sp. n.) and three are migratory (Leporinus friderici, Megaleporinus obtusidens and Pimelodus maculatus). In this paper, we provide images of species collected. Results indicate that the Guareí River basin is a hotspot of fish diversity in the Upper Paranapanema River, stressing the need for adequate management and conservation actions.

Effects of cadmium exposure on sperm and larvae of the neotropical fish Prochilodus magdalenae

Cadmium (Cd) is a heavy metal with known deleterious effects on animal reproduction, decreasing the rate of fertilization of organisms such as fish. Prochilodus magdalenae is a very important fish species in Colombia, widely used by riparian communities from many rivers. Unfortunately, its population has been declining, whereas Cd seems to be more frequently detected in environmental matrices at Colombian ecosystems. The aim of this work was to determine the toxic effects of cadmium chloride on fertilization, sperm quality and mortality at 0, 1, 6 and 7 days post-hatching (dph) in this vulnerable species. The results indicated that Cd altered the fertilization and sperm quality by decreasing total motility and rapid and medium motilities of swimming spermatozoa. Results showed Cd produced 16.4 and 46.5% sperm motility inhibition, at 2.5 and 25 ppm, respectively. The heavy metal also impaired sperm curvilinear and straight-line velocities in a concentration-response dose. Cadmium-induced a dose-dependent effect on the mortality of the exposed larvae that depends on its development stage, with greater effects after 6 and 7 dph, observed at concentrations as low as 0.025 ppm. The results showed that the exposure to environmentally relevant Cd concentrations causes physiological changes in the initial stages of development of P. magdalenae, likely increasing the risk of reducing the fertility rate of this valuable fish species.

Aspectos auto-ecológicos de <i>Bryconops giacopinii</i> (Iguanodectidae) de la Serranía de la Lindosa, San José de Guaviare, Colombia

La relación longitud-peso y el factor de condición (K) son utilizados como descriptores de los aspectos auto-ecológicos de los peces, porque aportan información sobre el crecimiento, reproducción y bienestar. Por tanto, su caracterización podría ser de gran utilidad en la evaluación de poblaciones de peces en sistemas acuáticos afectados por diferentes niveles de intervención. El objetivo principal de este estudio fue la caracterización y descripción de la relación longitud-peso, factor de condición y dieta de Bryconops giacopinii en seis localidades en la Serranía de La Lindosa durante un ciclo anual (estación seca y lluviosa). Los peces (n= 333) fueron medidos, pesados, y su estómago fue removido para la identificación de los ítems alimenticios. Los individuos presentaron un crecimiento alométrico positivo durante ambas estaciones climáticas, sin diferencias significativas en el factor de condición durante el cambio estacional. Por otra parte, se identificaron 17 tipos diferentes de ítems alimenticios, la mayoría de ellos artrópodos terrestres. La frecuencia y ocurrencia de estos ítems no siguió ningún patrón temporal ni espacial. B. giacopinii presentó una dieta generalista, con un alto consumo de insectos terrestres. Los resultados obtenidos evidencian la estrecha relación entre esta especie y el bosque de ribera, demostrando la importancia que presentan estos corredores biológicos para el mantenimiento de la comunidad acuática y su conservación. Esta información aporta al conocimiento biológico de esta especie de interés comercial y puede ser utilizada en la comparación con otras poblaciones presentes en otras cuencas. B. giacopinii es una especie con un papel ecológico importante, por lo tanto, estudios de su relación con el ecosistema podrían ser relevantes y necesarios.

Spatial and temporal distribution of Gymnorhamphichthys rondoni (Gymnotiformes: Rhamphichthyidae) in a long-term study of an Amazonian terra firme stream, Leticia - Colombia

ABSTRACT Weakly electric fishes continually emit electric organ discharges (EOD) as a means of communication and localization of objects in their surroundings. Depending on water conductivity, the amplitude of the electric field generated is known to increase with decreases in electrical conductivity of the water. In Amazonian terra firme streams, water conductivity is extremely low and fluctuates constantly due to local and regional rains. In this context, the space between freely moving weakly electric fishes may be expected to decrease, on average, with an increase in water conductivity. To test this hypothesis, we recorded the positions at rest of the sand-dwelling fish Gymnorhamphichthys rondoni in a terra firme stream for several days in alternating months, over two years. Based on daily nearest neighbor distances among individual fish in a grid, we found a uniform temporal distribution pattern (which was not affected by water conductivity) indicative of site fidelity. Here we highlight the role of other factors that could influence resting site fidelity.

Fishes of the Cusiana River (Meta River basin, Colombia), with an identification key to its species

The Cusiana River sub-basin has been identified as a priority conservation area in the Orinoco region in Colombia due to its high species diversity. This study presents an updated checklist and identification key for fishes of the Cusiana River sub-basin. The checklist was assembled through direct examination of specimens deposited in the main Colombian ichthyological collections. A total of 2020 lots from 167 different localities from the Cusiana River sub-basin were examined and ranged from 153 to 2970 m in elevation. The highest number of records were from the piedmont region (1091, 54.0 %), followed by the Llanos (878, 43.5 %) and Andean (51, 2.5 %). 241 species distributed in 9 orders, 40 families, and 158 genera were found. The fish species richness observed (241), represents 77.7 % of the 314 estimated species (95 % CI=276.1-394.8). The use of databases to develop lists of fish species is not entirely reliable; therefore taxonomic verification of specimens in collections is essential. The results will facilitate comparisons with other sub-basins of the Orinoquia, which are not categorized as areas of importance for conservation in Colombia.

Modificación de ambientes lóticos para la extracción de carbón a cielo abierto: efectos sobre la biota y recomendaciones

La minería a cielo abierto de carbón posibilitará una serie de modificaciones a diferentes ambientes lóticos en Colombia. En este artículo analizamos el caso de una mina de carbón a cielo abierto ubicada en el departamento de La Guajira, Colombia, centrándonos en el estado de conocimiento de la ictiofauna, los potenciales efectos de las modificaciones sobre las comunidades acuáticas y la efectividad de las medidas de restauración/compensación. Para valorar el estado del conocimiento de la ictiofauna, revisamos bibliografía pertinente y utilizamos el estimador de riqueza de especies ICE. Para identificar los potenciales efectos de las modificaciones sobre la biota acuática y la efectividad de las medidas de restauración/compensación realizamos una revisión bibliográfica. Encontramos que cerca del 42 % de las especies de peces de la cuenca del río Ranchería y del área de concesión minera aún son desconocidas. Además, estudios relacionados indican que las transformaciones afectarán de manera negativa las características físicas de los cauces y, en consecuencia, la estructura y función de la biota acuática. Aunque aconsejamos la no intervención de los cuerpos de agua, planteamos algunas recomendaciones bajo un escenario de intervención, como realizar investigación abordando diferentes facetas de la biodiversidad, publicación de los resultados en medios arbitrados, acceso público a los datos, entre otras. Concluimos que si prevalece el beneficio económico derivado de la explotación de carbón sobre la preservación de los ambientes acuáticos habrá una pérdida de funciones y servicios ecológicos indispensables para el ser humano y el equilibrio del ecosistema.