Physiological response of rice (Oryza sativa L.) genotypes to elevated nitrogen applied under field conditions

Exploring the potential of Bacillus for crop productivity and sustainable solution for combating rice false smut disease

Rice false smut, which is caused by the soil-borne fungal pathogen Ustilaginoidea virens (U. virens), is one of the most threatening diseases in most of the rice-growing countries including India that causes 0.5-75% yield loss, low seed germination, and a reduction in seed quality. The assessment of yield loss helps to understand the relevance of disease severity and facilitates the implementation of appropriate management strategies. This study aimed to mitigate biotic stress in rice by employing a rhizobacterial-based bioformulation, which possesses diverse capabilities as both a plant growth promoter and a biocontrol agent against U. virens. Rhizobacteria were isolated from the soil of the rice rhizospheres from the healthy plant of the false smut affected zone. Furthermore, they were identified as Bacillus strains: B. subtilis (BR_4), B. licheniformis (BU_7), B. licheniformis (BU_8), and B. vallismortis (KU_7) via sequencing. Isolates were screened for their biocontrol potential against U. virens under in vitro conditions. The antagonistic study revealed that B. vallismortis (KU_7) inhibited U. virens the most (44.6%), followed by B. subtilis BR_4 (41.4%), B. licheniformis BU_7 (39.8%), and B. licheniformis BU_8 (43.5%). Various biochemical and plant growth promoting attributes, such as phosphate and Zn solubilization, IAA, ammonium, siderophore, and chitinase production, were also investigated for all the selected isolates. Furthermore, the potential of the isolates was tested in both in vitro and field conditions by employing talc-based bioformulation through bio-priming and root treatment. The application of bioformulation revealed a 20% decrease in disease incidence in plants treated with B. vallismortis (KU_7), a 60.5% increase in the biological yield, and a 45% increase in the grain yield. This eco-friendly approach not only controlled the disease but also improved the grain quality and reduced the chaffiness.

Promising physiological traits associated with nitrogen use efficiency in rice under reduced N application

Higher grain yield in high-yielding rice varieties is mostly driven by nitrogen (N) fertilizer applied in abundant amounts leading to increased production cost and environmental pollution. This has fueled the studies on nitrogen use efficiency (NUE) to decrease the N fertilizer application in rice to the possible extent. NUE is a complex physiological trait controlled by multiple genes, but yet to be completely deciphered in rice. With an objective of identifying the promising physiological traits associated with NUE in rice, the performance of 14 rice genotypes was assessed at N0, N50, N100, and N150 for four (two wet and two dry) seasons using agro-morphological, grain yield, flag leaf traits, photosynthetic pigment content, flag leaf gas exchange traits, and chlorophyll fluorescence traits. Furthermore, the data were used to derive various NUE indices to identify the most appropriate indices useful to screen rice genotypes at N50. Results indicate that with the increase in N application, cumulative grain yield increased significantly up to N100 (5.02 t ha-1); however, the increment in grain yield was marginal at N150 (5.09 t ha-1). The mean reduction of grain yield was only 26.66% at N50 ranging from 15.0% to 34.2%. The significant finding of the study is the identification of flag leaf chlorophyll fluorescence traits (Fv/Fm, ΦPSII, ETR, and qP) and Ci associated with grain yield under N50, which can be used to screen N use efficient genotypes in rice under reduced N application. Out of nine NUE indices assessed, NUpE, NUtE, and NUEyield were able to delineate the high-yielding genotypes at N50 and were useful to screen rice under reduced N conditions. Birupa emerged as one of the high yielders under N50, even though it is a moderate yielder at N100 and infers the possibility of cultivating some of the released rice varieties under reduced N inputs. The study indicates the possibility of the existence of promising genetic variability for grain yield under reduced N, the potential of flag leaf chlorophyll fluorescence, and gas exchange traits as physiological markers and best suitable NUE indices to be deployed in rice breeding programs.

Fertilization altered co-occurrence patterns and microbial assembly process of ammonia-oxidizing microorganisms

Ammonia-oxidizing archaea and bacteria (AOA and AOB, respectively) are important intermediate links in the nitrogen cycle. Apart from the AOA and AOB communities in soil, we further investigated co-occurrence patterns and microbial assembly processes subjected to inorganic and organic fertilizer treatments for over 35 years. The amoA copy numbers and AOA and AOB communities were found to be similar for the CK and organic fertilizer treatments. Inorganic fertilizers decreased the AOA gene copy numbers by 0.75-0.93-fold and increased the AOB gene copy numbers by 1.89-3.32-fold compared to those of the CK treatment. The inorganic fertilizer increased Nitrososphaera and Nitrosospira. The predominant bacteria in organic fertilizer was Nitrosomonadales. Furthermore, the inorganic fertilizer increased the complexity of the co-occurrence pattern of AOA and decreased the complexity pattern of AOB comparing with organic fertilizer. Different fertilizer had an insignificant effect on the microbial assembly process of AOA. However, great difference exists in the AOB community assembly process: deterministic process dominated in organic fertilizer treatment and stochastic processes dominated in inorganic fertilizer treatment, respectively. Redundancy analysis indicated that the soil pH, NO₃^-N, and available phosphorus contents were the main factors affecting the changes in the AOA and AOB communities. Overall, this findings expanded our knowledge concerning AOA and AOB, and ammonia-oxidizing microorganisms were more disturbed by inorganic fertilizers than organic fertilizers.

Exploring relationship among nitrogen fertilizer, yield and nitrogen use efficiency in modern wheat varieties under subtropical condition

Due to variations in the length of crop growth and the dynamics of soil nitrogen, the nitrogen (N) requirements of different wheat varieties may change. In this relation, during two successive wheat-growing seasons in 2018 and 2019, pot experiments were conducted to assess relationship among N fertilizer, yield and efficiency of N use in contemporary wheat varieties. Ten varieties of wheat viz. BARI Gom -24, BARI Gom -25, BARI Gom -26, BARI Gom -27, BARI Gom -28, BARI Gom -29, BARI Gom-30, BARI Gom-31, BARI Gom-32, and BARI Gom-33 and four N levels e.g. N 0, N 45 kg ha^-1, N 90 kg ha^-1 and N 135 kg ha^-1 were used in the study. Completely randomized design (CRD) was followed with three replications. Wheat yield and yield-contributing elements like spike length, 1000- grain weight, and grain yield enhanced at N levels up to N 90 kg ha^-1. The principal component analysis illustrated that the range BARI -32 had the most grain manufacturing and N use efficiency with N 90 kg ha^-1 application. Correlation depicted that there is a robust relation amongst N use, yield and N use efficiency. Dendrogram organized primarily based totally at the resemblance via way of means of Euclidean distance among wheat varieties and it was confirmed that varieties allocated in clusters II had been greater diverse. The end consequence found out big hereditary difference in wheat which could doubtlessly be used for the wide range cultivation and breeding plan.

Bacterial Diversity and Potential Functions in Response to Long-Term Nitrogen Fertilizer on the Semiarid Loess Plateau

Bacterial diversity and its functions are essential to soil health. N fertilization changes bacterial communities and interferes with the soil biogeochemical N cycle. In this study, bacterial community and soil physicochemical properties were studied in 2018 after applying N fertilizers (0, 52.5, 105, 157.5, and 210 kg N ha⁻¹) for a long (2003–2018) and a short (2003–2004) duration in a wheat field on the Loess Plateau of China. Soil bacteria were determined using 16S rRNA Illumina-MiSeq^®, and the prediction function was analyzed through PICRUSt. The study showed that N fertilizer significantly changed the diversity and abundance of bacterial communities. The phyla Proteobacteria, Actinobacteria, Acidobacteria, and Chloroflexi were most abundant, accounting for 74–80% of the bacterial community abundance. The optimum rates of N fertilizer application (N105) maintain soil health by promoting soil microbial diversity and abundance. The bacterial population abundance was higher after short-term N application than after N application for a long duration and lowest with the high N-fertilizer treatment (N210). High N enrichment led to more heterotrophic N-fixing microorganisms (Alphaproteobacteria), in which metabolism and genetic information processing dominated, while cellular processes, genetic information processing, metabolism, and organismal systems were the main functional categories under low N. The phyla Gemmatimonadetes, Actinobacteria, Bacteroidetes, and Chloroflexi were the key bacteria in the co-occurrence network. The genus Saccharimonadales of the superphylum Patescibacteria has a more significant impact under low N treatment. Long-term N fertilization affected the soil pH, NO₃-N, and other physicochemical properties, and soil NO₃-N was the highest indicator, contributing 81% of the bacterial community function under different N fertilizer treatments.

Response of Rice (Oryza sativa L.) Cultivars to Variable Rate of Nitrogen under Wet Direct Seeding in Temperate Ecology

Transplanting rice appears to pose many problems, including depletion of freshwater reservoirs and competition for labor. Conversely, direct seeding allows us to overcome shortcomings associated with conventional transplanting. Nitrogen is a crucial nutrient needed for plant growth and yield. Therefore, this study was executed to analyze the influence of nitrogen on the performance of rice genotypes grown by direct seeding in wet soil. The experiment comprised various rice cultivars, i.e., Shalimar Rice-1, Shalimar Rice-3, Shalimar Rice-4, and Jhelum, and nitrogen (N) levels, i.e., 0, 90, 120, and 150 kg/ha. Shalimar Rice-4 produced a maximum grain yield (6.39 t/ha), followed by Shalimar Rice-3 and Jhelum). The application of 150 kg N/ha showed maximum values for growth parameters, yield attributing traits, and grain yield (6.68 t/ha); however, it remained at par with 120 kg N/ha. Crop water productivity was highest in Shalimar Rice-4 (0.49 kg/m3), and the same showed a consistent increase with increasing N levels from 0–150 kg/ha, with a comparable value of 0.49 to 0.51 recorded at 120 and 150 kg N/ha. Moreover, the Shalimar Rice-1 variety required the maximum in growing degree days (GDD) and helio-thermal units (HTU) to attain different phenological stages till physiological maturity (131 days). However, the cultivar Shalimar rice-4 (SR-4) performed better by registering significantly higher heat use efficiency (HUE) (4.44 kg/ha °C/day). Additionally, the highest net return and the benefit-cost ratio were registered by Shalimar Rice-4. B:C ratio of 1.75 was realized from application of 150 kg N/ha, which remained very close to that achieved with 120 kg N/ha. In conclusion, the rice cultivar Shalimar Rice-4 with the application of 120 kg N/ha could boost rice production under DSR in water-scarce regions of temperate northern India.

Comparative response of rice cultivars to elevated air temperature in Bhabar region of Indian Himalaya: status on yield attributes

Increasing atmospheric temperature is the consequence of global warming, which is expected to influence crop growth and development, resulting in declining productivity in the tropical agriculture system. The selection of temperature tolerant crop cultivars with higher productivity to meet the future demand of the world expanding human population requires a thorough understanding of crop growth feedback to increasing temperature. Therefore, a field experiment was conducted during the Kharif season of 2012 and 2013 to understand the response of yield and yield-related traits of eleven rice cultivars to elevated temperature grown inside field mounted temperature gradient tunnel (TGT) in the Bhabar region of the Indian Himalayas. The elevated temperature significantly impacted growth and yield and yield-related traits, especially tillers, panicles, filled and chaffy grains, grain, and 1000 grain weight, yield, and harvest index of all the cultivars during both years. The cultivars, i.e., IET 21404 and IET 21577, were reported to produced more tillers in 2012, whereas IET 21411 and KRH 2 had a maximum 2013. Likewise, maximum panicles were reported in IET 21404 and IET 21577 in 2012, while IET 21411, IET 21582, and KRH 2 in 2013 under elevated temperature. The highest grain filling under high temperature in 2012 was found in IET 21577, then IET 21404; however, IET 21411 and IET 21405 were the highest filled grains in 2013. Consequently, the cultivars IET 21577 and IET 21404 were reported as more tolerant towards yielding higher grain weight and Harvest Index. This study offers an opportunity to screen temperature tolerant cultivars with increased productivity for fulfilling the demand of rice-dependent regions in future changing climatic conditions.

High Nitrogen Fertilization Modulates Morpho-Physiological Responses, Yield, and Water Productivity of Lowland Rice under Deficit Irrigation

Sustainability of rice production under flooding conditions has been challenged by water shortage and food demand. Applying higher nitrogen fertilization could be a practical solution to alleviate the deleterious effects of water stress on lowland rice (Oryza sativa L.) in semi-arid conditions. For this purpose, field experiments were conducted during the summer of 2017 and 2018 seasons. These trials were conducted as split-split based on randomized complete blocks design with soil moisture regimes at three levels (120, 100 and 80% of crop evapotranspiration (ETc), nitrogen fertilizers at two levels (N1—165 and N2—200 kg N ha−1) and three lowland Egyptian rice varieties [V1 (Giza178), V2 (Giza177) and V3 (Sakha104)] using three replications. For all varieties, growth (plant height, tillers No, effective tillers no), water status ((relative water content RWC, and membrane stability index, MSI), physiological responses (chlorophyll fluorescence, Relative chlorophyll content (SPAD), and yield were significantly increased with higher addition of nitrogen fertilizer under all water regimes. Variety V1 produced the highest grain yield compared to other varieties and the increases were 38% and 15% compared with V2 and V3, respectively. Increasing nitrogen up to 200 kg N ha−1 (N2) resulted in an increase in grain and straw yields by 12.7 and 18.2%, respectively, compared with N1. The highest irrigation water productivity (IWP) was recorded under I2 (0.89 kg m−3) compared to (0.83 kg m−3) and (0.82 kg m−3) for I1 and I3, respectively. Therefore, the new applied agro-management practice (deficit irrigation and higher nitrogen fertilizer) effectively saved irrigation water input by 50–60% when compared with the traditional cultivation method (flooding system). Hence, the new proposed innovative method for rice cultivation could be a promising strategy for enhancing the sustainability of rice production under water shortage conditions.

Sodium lignosulfonate improves shoot growth of Oryza sativa via enhancement of photosynthetic activity and reduced accumulation of reactive oxygen species

Lignosulfonate (LS) is a by-product obtained during sulfite pulping process and is commonly used as a growth enhancer in plant growth. However, the underlying growth promoting mechanism of LS on shoot growth remains largely unknown. Hence, this study was undertaken to determine the potential application of eco-friendly ion-chelated LS complex [sodium LS (NaLS) and calcium LS (CaLS)] to enhance recalcitrant indica rice MR 219 shoot growth and to elucidate its underlying growth promoting mechanisms. In this study, the shoot apex of MR 219 rice was grown on Murashige and Skoog medium supplemented with different ion chelated LS complex (NaLS and CaLS) at 100, 200, 300 and 400 mg/L The NaLS was shown to be a better shoot growth enhancer as compared to CaLS, with optimum concentration of 300 mg/L. Subsequent comparative proteomic analysis revealed an increase of photosynthesis-related proteins [photosystem II (PSII) CP43 reaction center protein, photosystem I (PSI) iron-sulfur center, PSII CP47 reaction center protein, PSII protein D1], ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco), carbohydrate metabolism-related proteins (glyceraldehyde-3-phosphate dehydrogenase 3, fructose-bisphosphate aldolase) and stress regulator proteins (peptide methionine sulfoxide reductase A4, delta-1-pyrroline-5-carboxylate synthase 1) abundance in NaLS-treated rice as compared to the control (MSO). Consistent with proteins detected, a significant increase in biochemical analyses involved in photosynthetic activities, carbohydrate metabolism and protein biosynthesis such as total chlorophyll, rubisco activity, total sugar and total protein contents were observed in NaLS-treated rice. This implies that NaLS plays a role in empowering photosynthesis activities that led to plant growth enhancement. In addition, the increased in abundance of stress regulator proteins were consistent with low levels of peroxidase activity, malondialdehyde content and phenylalanine ammonia lyase activity observed in NaLS-treated rice. These results suggest that NaLS plays a role in modulating cellular homeostasis to provide a conducive cellular environment for plant growth. Taken together, NaLS improved shoot growth of recalcitrant MR 219 rice by upregulation of photosynthetic activities and reduction of ROS accumulation leading to better plant growth.

The Ghd7 transcription factor represses ARE1 expression to enhance nitrogen utilization and grain yield in rice

The genetic improvement of nitrogen use efficiency (NUE) of crops is vital for grain productivity and sustainable agriculture. However, the regulatory mechanism of NUE remains largely elusive. Here, we report that the rice Grain number, plant height, and heading date7 (Ghd7) gene genetically acts upstream of ABC1 REPRESSOR1 (ARE1), a negative regulator of NUE, to positively regulate nitrogen utilization. As a transcriptional repressor, Ghd7 directly binds to two Evening Element-like motifs in the promoter and intron 1 of ARE1, likely in a cooperative manner, to repress its expression. Ghd7 and ARE1 display diurnal expression patterns in an inverse oscillation manner, mirroring a regulatory scheme based on these two loci. Analysis of a panel of 2656 rice varieties suggests that the elite alleles of Ghd7 and ARE1 have undergone diversifying selection during breeding. Moreover, the allelic distribution of Ghd7 and ARE1 is associated with the soil nitrogen deposition rate in East Asia and South Asia. Remarkably, the combination of the Ghd7 and ARE1 elite alleles substantially improves NUE and yield performance under nitrogen-limiting conditions. Collectively, these results define a Ghd7-ARE1-based regulatory mechanism of nitrogen utilization, providing useful targets for genetic improvement of rice NUE.

Seasonal variation in biochemical responses of bamboo clones in the sub-tropical climate of Indian Himalayan foothills

Seasonal variations affect the rate of biomass accumulation in plants which is internally governed by biochemical metabolites. Studying the impact of atmospheric seasonal changes on biochemical parameters can improve our understanding of various plant species' physiological plasticity. Bamboos are a fast-growing group of woody grass species, widely distributed across tropical and sub-tropical regions of the world, and are an important species of the Indian subcontinent. Nevertheless, limited information is available on the seasonal response of biochemical's in bamboo species growing in ambient atmospheric circumstances. Therefore, we investigated the seasonal biochemical responses of Dendrocalamus strictus clones viz. Pantnagar (PNT) and Dhampur (DHM) to seasonal ambient atmospheric conditions. The concentrations of chlorophyll, protein, carbon, nitrogen, phosphorus, potassium, and magnesium in bamboo leaves were increased significantly (p < 0.025) in monsoon compared to summer and winter seasons. Carotenoid, total sugar and ascorbic acid contents were highest during winters and reduced significantly during monsoon. Proline content was highest in summer and reduced by 97% during monsoon, indicating effective adaptation to both clones' water-limited conditions. It was inferred that seasonal variation in atmospheric conditions significantly influenced the biochemical constituents of plants. This study provides a biochemical approach for screening potential bamboo species with adaptive nature for plantation purposes intended to mitigate climate change.

Bio-Organic Fertilizer: A Green Technology to Reduce Synthetic N and P Fertilizer for Rice Production

Decomposed organic materials, in combination with plant growth-promoting bacteria (PGPB), are environmentally friendly and reduce synthetic fertilizer use in rice production. A bio-organic fertilizer (BoF) was prepared using kitchen waste (79%), chita-dhan (unfilled rice grain) biochar (15%), rock phosphate (5%), and a consortium of 10 PGPB (1%) to supplement 30% nitrogen and to replace triple superphosphate (TSP) fertilizer in rice production with an improvement of soil health. PGPB were local isolates and identified using 16S ribosomal RNA partial gene sequences as Bacillus mycoides, Proteus sp., Bacillus cereus, Bacillus subtilis, Bacillus pumilus, Paenibacillus polymyxa, and Paenibacillus spp. Isolates could fix N₂ by 0.7-1.4 g kg^-1, solubilize 0.1-1.2 g kg^-1 phosphate, and produce 0.1-40 g kg^-1 indoleacetic acid. The performance of BoF was evaluated by 16 field experiments and 18 farmers' field demonstration trials during the year 2017-2020 in different parts of Bangladesh. Performances of BoF were evaluated based on control (T₁), full synthetic fertilizer dose of N, P, and K (T₂), BoF (2 t ha^-1) + 70% N as urea + 100% K as muriate of potash (T₃), 70% N as urea + 100% P as TSP + 100% K as muriate of potash (T₄), and 2 t ha^-1 BoF (T₅) treatments. At the research station, average grain yield improved by 10-13% in T₃ compared with T₂ treatment. Depending on seasons, higher agronomic N use efficiency (19-30%), physiological N use efficiency (8-18%), partial factor productivity (PFP)_N (114-150%), recovery efficiency (RE)_N (3-31%), N harvest index (HI_N) (14-24%), agronomic P use efficiency (22-25%), partial factor productivity of P (9-12%), ARE_P (15-23%), and HI_P (3-6%) were obtained in T₃ compared with T₂ treatment. Research results were reflected in farmers' field, and significant (P < 0.05) higher plant height, tiller, panicle, grain yield, partial factor productivity of N and P were obtained in the same treatment. Application of BoF improved soil organic carbon by 6-13%, along with an increased number of PGPB as compared with full synthetic fertilizer dose. In conclusion, tested BoF can be considered as a green technology to reduce 30% synthetic N and 100% TSP requirements in rice production with improved soil health.

Effects of organic fertilizer on soil nutrient status, enzyme activity, and bacterial community diversity in Leymus chinensis steppe in Inner Mongolia, China

The long-term impact of human exploitation and environmental changes has led to a decline in grassland productivity and soil fertility, which eventually results in grassland degradation. The application of organic fertilizer is an effective improvement measure; however, it is still not fully understood how the addition of organic fertilizer influences grassland soil fertility and plant composition. A set of experiments were conducted in Inner Mongolia in China to reveal the tradeoff between steppe plants and soil microorganisms and the eco-physiological mechanisms involved, and how the addition of vermicompost and mushroom residues affect microbial diversity, enzyme activities, and the chemical properties of soil in degraded Leymus chinensis grassland. Organic fertilizer improved the soil nutrient status and shaped distinct bacterial communities. Compared with the control the available phosphorus (AP) and available potassium (AK) contents were highest under treatments a3 and b3, and the aboveground biomass was highest under the b3 treatment. Soil sucrase activities increased by 7.88% under the b3 treatment. Moreover, the richness index significantly increased by 7.07% and 7.23% under the a1 and b2 treatments, respectively. The most abundant Actinobacteria and Proteobacteria were detected in the organic fertilizer treatment. A linear discriminant analysis effect size (LEfSe) indicated that the bacterial community was significantly increased under the b3 treatment. A canonical correspondence analysis (RDA) and spearman correlation heatmap confirmed that total P (TP) and urease were the key driving factors for shaping bacterial communities in the soil. Our results indicated that the application of large amounts of vermicompost and mushroom residues increased the availability of nutrients and also enhanced the biodiversity of soil bacterial communities in L. chinensis grasslands, which will contribute to the sustainable development of agro-ecosystems.

Nitrogen fertilizer and Amorpha fruticosa leguminous shrub diversely affect the diazotroph communities in an artificial forage grassland

Soil diazotrophs have been known to be essential in biological nitrogen (N) fixation, which contributes to the sustainability of agricultural ecosystems. However, there remains an inadequacy of research on the effects of different N inputs from N fertilization and from symbiotic N fixation associated with legumes on the diazotroph communities in agricultural ecosystems. Hence, we investigated the variations in diazotroph abundance and community composition as well as the soil properties with different N inputs in the Guimu-1 hybrid elephant grass cultivation on karst soils in China. We conducted six different N treatments: control, Amorpha fruticosa planting at a spacing of 1.5 × 2 m (AFD1), A. fruticosa planting at a spacing of 1 × 2 m (AFD2), N fertilization (N), A. fruticosa planting at a spacing of 1.5 × 2 m with N fertilization (AFD1N), and A. fruticosa planting at a spacing of 1 × 2 m with N fertilization (AFD2N). Our results showed that the interaction between sampling time and N fertilization significantly affected the diazotroph abundance. In July, the diazotroph abundance significantly decreased in the N fertilization treatments: N, AFD1N, and AFD2N, compared to that in the control. The richness and Chao1 estimator of diazotrophs significantly increased in AFD2N and AFD1 correspondingly in December and July, relative to those in the control. Co-occurrence networks showed species-species interactions with high negative correlations that occurred more in the control than in the N input plots. The N input from N fertilization and legume planting directly increased the ammonium N and nitrate N and consequently affected the dissolved organic N and pH of the soil, thereby altering the diazotroph abundance and richness. Our findings demonstrated that both N fertilization and legumes could reduce the interspecific competition among diazotroph species by providing greater N availability in the forage grass.

Potassium Application Improves Grain Yield and Alleviates Drought Susceptibility in Diverse Maize Hybrids

Maize (Zea mays L.) is an important component of global food security but its production is threatened by abiotic stresses in climate change scenarios, especially drought stress. Many multinational companies have introduced maize hybrids worldwide which have variable performance under diverse environmental conditions. The maize production is likely to be affected by a future water crisis. Potassium (K) is a well-known macronutrient which improves the performance of cereals under abiotic stresses. In this field experiment, we assessed the influence of soil applied K on the productivity of diverse maize hybrids grown under well-watered and drought stress conditions. The study consisted of three K levels viz., control (no KCl), KCl at 50 kg ha⁻¹, and KCI at 75 kg ha⁻¹ factorally combined with two irrigation levels (i.e., normal recommended irrigation, well-watered condition, and half of the recommended irrigation, drought stress condition) and eight maize hybrids. Irrigation was kept in main plots, potassium in subplot, and maize hybrids in sub-subplots. The results revealed that performance of the maize hybrids was significantly influenced by all three factors, and the interaction of irrigation with potassium and irrigation with hybrids was significant; results being non-significant for all other interactions. Potassium application improved yield traits and water productivity under both normal and water stress conditions but effect was more prominent under water stress conditions than normal conditions. Potassium application also alleviated drought susceptibility of all maize hybrids. In all cases, the performance of maize hybrids was maximum under potassium application at 75 kg ha⁻¹.

Nitrogen Use Efficiency Phenotype and Associated Genes: Roles of Germination, Flowering, Root/Shoot Length and Biomass

Crop improvement for Nitrogen Use Efficiency (NUE) requires a well-defined phenotype and genotype, especially for different N-forms. As N-supply enhances growth, we comprehensively evaluated 25 commonly measured phenotypic parameters for N response using 4 N treatments in six indica rice genotypes. For this, 32 replicate potted plants were grown in the green-house on nutrient-depleted sand. They were fertilized to saturation with media containing either nitrate or urea as the sole N source at normal (15 mM N) or low level (1.5 mM N). The variation in N-response among genotypes differed by N form/dose and increased developmentally from vegetative to reproductive parameters. This indicates survival adaptation by reinforcing variation in every generation. Principal component analysis segregated vegetative parameters from reproduction and germination. Analysis of variance revealed that relative to low level, normal N facilitated germination, flowering and vegetative growth but limited yield and NUE. Network analysis for the most connected parameters, their correlation with yield and NUE, ranking by Feature selection and validation by Partial least square discriminant analysis enabled shortlisting of eight parameters for NUE phenotype. It constitutes germination and flowering, shoot/root length and biomass parameters, six of which were common to nitrate and urea. Field-validation confirmed the NUE differences between two genotypes chosen phenotypically. The correspondence between multiple approaches in shortlisting parameters for NUE makes it a novel and robust phenotyping methodology of relevance to other plants, nutrients or other complex traits. Thirty-Four N-responsive genes associated with the phenotype have also been identified for genotypic characterization of NUE.

Straw Return with Reduced Nitrogen Fertilizer Maintained Maize High Yield in Northeast China

Crop residue management is a major concern in China. Returning straw to the field has been promoted to reduce chemical fertilizer input and increase crop yield. For this, the present study as a part of an existing long-term field experiment was conducted including four treatments: (1) Maize straw return with reduced nitrogen, phosphorus, and potassium fertilizers (straw + NPK; SNPK); (2) NPK fertilizers; (3) PK fertilizers; and (4) no fertilizers added (nF) in the years of 2016 and 2017. Results showed SNPK and NPK produced similar grain yield over the two years (12,485 vs. 12,754 kg ha−1), which was approximately 3-fold of PK and nF (4763 vs. 3858 kg ha−1). The yield difference was not significant between SNPK and NPK and between PK and nF. The effect of straw return on plant productivity is related to precipitation. In contrast to total carbon (C), nitrogen (N), and phosphorus (P), K was lost from leaf, stem, and grain. Dynamics of plant N post-flowering is critical to determine maize yield and yield components relative to C, P, and K. Dynamics of P and K in leaf were more correlated with yield than in stem, implying the significance of leaf productivity in determining grain yield. These results indicate that combination of NPK fertilizers is critical for increasing grain yield in maize. Crop straw return with reduced NPK fertilizers will help to improve yield and reduce chemical fertilizer input in the long run.

Elevated temperature modulates rice pollen structure: a study from foothill of Himalayan agro-ecosystem in India

Rice cultivation is practiced in various agro-climatic zones ranging from tropical to temperate. Anthesis is a critical stage for deciding productivity which is controlled by numerous biotic and abiotic stresses. Elevated temperature is one of the key abiotic stresses that adversely modulate the pollen formation and structure, i.e., infertility, results in productivity decline. The present study was conducted to investigate the effects of elevated temperature on morphological changes in pollen grains of rice grown in temperature gradient tunnel (TGT) constructed in filed condition. The ambient and TGT temperature varied from 31.84 °C_(max) to 20.56 °C_(min) and 41.91 °C_(max) to 22.37 °C_(min), respectively, during study period. The scanning electron and light microscopic study showed extreme morphological abnormalities viz. shape and size in pollen grains of rice exposed to elevated temperature as compared to ambient. These abnormalities induced by elevated temperature may drastically decline grain filling potential which ultimately reduces grain yield in future climate change. This study will enlighten rice researchers for further screening of rice genotypes thermotolerant to foothills of Himalayan agro-ecosystem.

Long-term combined application of manure and chemical fertilizer sustained higher nutrient status and rhizospheric bacterial diversity in reddish paddy soil of Central South China

Bacteria, as the key component of soil ecosystems, participate in nutrient cycling and organic matter decomposition. However, how fertilization regime affects the rhizospheric bacterial community of reddish paddy soil remains unclear. Here, a long-term fertilization experiment initiated in 1982 was employed to explore the impacts of different fertilization regimes on physicochemical properties and bacterial communities of reddish paddy rhizospheric soil in Central South China by sequencing the 16S rRNA gene. The results showed that long-term fertilization improved the soil nutrient status and shaped the distinct rhizospheric bacterial communities. Particularly, chemical NPK fertilizers application significantly declined the richness of the bacterial community by 7.32%, whereas the application of manure alone or combined with chemical NPK fertilizers significantly increased the biodiversity of the bacterial community by 1.45%, 1.87% compared with no fertilization, respectively. Moreover, LEfSe indicated that application of chemical NPK fertilizers significantly enhanced the abundances of Verrucomicrobia and Nitrospiraceae, while manure significantly increased the abundances of Deltaproteobacteria and Myxococcales, but the most abundant Actinobacteria and Planctomycetes were detected in the treatment that combined application of manure and chemical NPK fertilizers. Furthermore, canonical correspondence analysis (CCA) and the Mantel test clarified that exchangeable Mg2+ (E-Mg2+), soil organic carbon (SOC) and alkali-hydrolyzable nitrogen (AN) are the key driving factors for shaping bacterial communities in the rhizosphere. Our results suggested that long-term balanced using of manure and chemical fertilizers not only increased organic material pools and nutrient availability but also enhanced the biodiversity of the rhizospheric bacterial community and the abundance of Actinobacteria, which contribute to the sustainable development of agro-ecosystems.

Molecular Genetics and Breeding for Nutrient Use Efficiency in Rice

In the coming decades, rice production needs to be carried out sustainably to keep the balance between profitability margins and essential resource input costs. Many fertilizers, such as N, depend primarily on fossil fuels, whereas P comes from rock phosphates. How long these reserves will last and sustain agriculture remains to be seen. Therefore, current agricultural food production under such conditions remains an enormous and colossal challenge. Researchers have been trying to identify nutrient use-efficient varieties over the past few decades with limited success. The concept of nutrient use efficiency is being revisited to understand the molecular genetic basis, while much of it is not entirely understood yet. However, significant achievements have recently been observed at the molecular level in nitrogen and phosphorus use efficiency. Breeding teams are trying to incorporate these valuable QTLs and genes into their rice breeding programs. In this review, we seek to identify the achievements and the progress made so far in the fields of genetics, molecular breeding and biotechnology, especially for nutrient use efficiency in rice.

Chronic fertilization of 37 years alters the phylogenetic structure of soil arbuscular mycorrhizal fungi in Chinese Mollisols

Arbuscular mycorrhizal fungi (AMF) play vital roles in sustaining soil productivity and plant communities. However, adaption and differentiation of AMF in response to commonly used fertilization remain poorly understood. In this study, we showed that the AMF community composition was primarily driven by soil physiochemical changes associated with chronic inorganic and organic fertilization of 37 years in Mollisols. High-throughput sequencing indicated that inorganic fertilizer negatively affected AMF diversity and richness, implying a reduction of mutualism in plant-AMF symbiosis; however, a reverse trend was observed for the application of inorganic fertilizer combined with manure. With regards to AMF community composition, order Glomerales was dominant, but varied significantly among different fertilization treatments. All fertilization treatments decreased family Glomeraceae and genus Funneliformis, while Rhizophagus abundance increased. Plant-growth-promoting-microorganisms of family Claroideoglomeraceae and genus Claroideoglomus were stimulated by manure application, and likely benefited pathogen suppression and phosphorus (P) acquisition. Family Gigasporaceae and genus Gigaspora were negatively correlated with available P in soil. Additionally, redundancy analysis further suggested that soil available P, organic matter and pH were the most important factors in shaping AMF community composition. These results provide strong evidence for niche differentiation of phylogenetically distinct AMF populations under different fertilization regimes. Manure likely contributes to restoration and maintenance of plant-AMF symbiosis, and the balanced fertilization would favor the growth of beneficial AMF communities as one optimized management in support of sustainable agriculture in Mollisols.

Responses of fungal community composition to long-term chemical and organic fertilization strategies in Chinese Mollisols

How fungi respond to long-term fertilization in Chinese Mollisols as sensitive indicators of soil fertility has received limited attention. To broaden our knowledge, we used high-throughput pyrosequencing and quantitative PCR to explore the response of soil fungal community to long-term chemical and organic fertilization strategies. Soils were collected in a 35-year field experiment with four treatments: no fertilizer, chemical phosphorus, and potassium fertilizer (PK), chemical phosphorus, potassium, and nitrogen fertilizer (NPK), and chemical phosphorus and potassium fertilizer plus manure (MPK). All fertilization differently changed soil properties and fungal community. The MPK application benefited soil acidification alleviation and organic matter accumulation, as well as soybean yield. Moreover, the community richness indices (Chao1 and ACE) were higher under the MPK regimes, indicating the resilience of microbial diversity and stability. With regards to fungal community composition, the phylum Ascomycota was dominant in all samples, followed by Zygomycota, Basidiomycota, Chytridiomycota, and Glomeromycota. At each taxonomic level, the community composition dramatically differed under different fertilization strategies, leading to different soil quality. The NPK application caused a loss of Leotiomycetes but an increase in Eurotiomycetes, which might reduce the plant-fungal symbioses and increase nitrogen losses and greenhouse gas emissions. According to the linear discriminant analysis (LDA) coupled with effect size (LDA score > 3.0), the NPK application significantly increased the abundances of fungal taxa with known pathogenic traits, such as order Chaetothyriales, family Chaetothyriaceae and Pleosporaceae, and genera Corynespora, Bipolaris, and Cyphellophora. In contrast, these fungi were detected at low levels under the MPK regime. Soil organic matter and pH were the two most important contributors to fungal community composition.