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Stapelfeldt E, Berger B, Raak CK, Gupta S. Ayurveda for a Type 1 Diabetes Patient with Peripheral Arterial Occlusive Disease: A Case Report. Complement Med Res 2023; 31:94-102. [PMID: 37944500 DOI: 10.1159/000534992] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Accepted: 11/01/2023] [Indexed: 11/12/2023]
Abstract
INTRODUCTION The effect of Ayurvedic therapy in type 2 diabetes (T2D) is well documented. For people with type 1 diabetes (T1D), there is little evidence on the applicability of Ayurvedic therapy. This case illustrates the course of Ayurvedic treatment in a person with T1D accompanied by peripheral arterial occlusive disease (PAOD). CASE PRESENTATION The patient had insulin-dependent T1D since the age of 6 years. At 39 years of age, he developed progressive bilateral PAOD of the femoral arteries. He presented claudication symptoms at a walking distance of 150 m. Ten surgical interventions for recanalization have been performed. The PAOD put heavy psychological strains on the patient. He developed moderate depression with anxiety and complained of tinnitus and sleep disturbances. Through an initial outpatient Ayurvedic treatment mainly focused on dietary, lifestyle changes and phytotherapeutics, and a subsequent 6-week inpatient Ayurvedic treatment in India, a weight reduction of 12 kg, a reduction in insulin requirement to 65% of baseline, as well as a walking performance without restriction at a medium load could be achieved. The depression and inner tension retreated, and one-sided tinnitus and existing sleep disturbances dissolved completely. The lasting effect was still perceptible 5 months after the inpatient stay. CONCLUSIONS For this person with T1D with PAOD, outpatient and inpatient Ayurvedic therapy could generate a significant improvement of his situation. The case demonstrates that people with T1D can benefit from using individualized Ayurvedic therapy. This case motivates to invest in Ayurvedic research for people with T1D and complications. Einleitung Die Wirkung der ayurvedischen Therapie bei Typ-2-Diabetes (T2D) ist gut dokumentiert. Für Menschen mit Typ-1-Diabetes (T1D) gibt es kaum Belege für die Anwendbarkeit der ayurvedischen Therapie. Dieser Fall veranschaulicht den Verlauf einer ayurvedischen Behandlung bei einer Person mit T1D, begleitet von einer peripheren arteriellen Verschlusskrankheit (pAVK). Fallbericht Der Patient hatte seit seinem 6. Lebensjahr einen insulinabhängigen 'T1D'. Im Alter von 39 Jahren entwickelte er eine fortschreitende bilaterale periphere arterielle Verschlusskrankheit (pAVK) der Oberschenkelarterien. Bei einer Gehstrecke von 150 m zeigte er Claudicatio-Symptome. Es wurden 10 chirurgische Eingriffe zur Rekanalisation durchgeführt. Die pAVK stellte für den Patienten eine starke psychische Belastung dar. Er entwickelte eine mittelschwere Depression mit Angstzuständen und klagte über Tinnitus und Schlafstörungen. Durch eine erste ambulante ayurvedische Behandlung, die sich hauptsächlich auf Ernährungs-, Lebensstiländerungen und Phytotherapeutika konzentrierte, und eine anschließende 6-wöchige stationäre ayurvedische Behandlung in Indien wurde eine Gewichtsreduktion um 12 kg, eine Reduzierung des Insulinbedarfs auf 65% des Ausgangswerts sowie eine bedeutende Verbesserung der Gehstrecke erreicht. Die Depression und die innere Anspannung verschwanden, und der einseitige Tinnitus und bestehende Schlafstörungen lösten sich vollständig auf. Der nachhaltige Effekt war noch 5 Monate nach dem stationären Aufenthalt spürbar. Schlussfolgerungen Für diese Person mit T1D mit pAVK konnte eine ambulante und stationäre ayurvedische Therapie eine deutliche Verbesserung der Situation bewirken. Der Fall zeigt, dass Menschen mit T1D von einer individualisierten ayurvedischen Therapie profitieren können. Dieser Fall motiviert dazu, in die ayurvedische Forschung für Menschen mit T1D und Komplikationen zu investieren.
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Affiliation(s)
| | - Bettina Berger
- Institute of Integrative Medicine, Witten-Herdecke University, Witten, Germany
| | - Christa K Raak
- Institute of Integrative Medicine, Witten-Herdecke University, Witten, Germany
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Stepovoy K, Vardi M, Zigelman G, Urman N, Naveh A, Shapira N, Berger B. A Working TTFields Therapy Framework for Patient-Specific Segmentation-Based Treatment Planning and Dosimetry. Int J Radiat Oncol Biol Phys 2023; 117:e721. [PMID: 37786106 DOI: 10.1016/j.ijrobp.2023.06.2229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
PURPOSE/OBJECTIVE(S) Previously reported data support the notion that patient-specific treatment planning in patients with newly diagnosed glioblastoma (GBM) could positively impact patient outcomes like overall survival and progression free survival and predictably affect imaging progression patterns (Ballo et al 2019; Glas et al 2021). These findings provide the grounds for a TTFields dosimetry and patient-specific segmentation-based treatment planning (SBTP) paradigm. This paradigm allows optimized delivery of TTFields to target regions of interest (ROIs) and ability to adjust the treatment during therapy. In this study, we describe a working framework for TTFields SBTP. MATERIALS/METHODS The working framework consists of the following process: First, a patient's high-resolution imaging data (MRI with or without a CT) is imported from the institution's PACS. The image is segmented to identify tissue types using a combination of automatic and semi-automatic algorithms. During this stage, the user indicates the target ROI subject to optimization. Then, a computational model of the patient is created in which typical electrical properties are allocated to each tissue type based on empirical measurements and/or literature. At this point, the user can mark avoidance zones on the skin identifying areas where the transducer arrays (TAs) should not be placed. Next, dedicated algorithms identify optimal arrangements of TAs to produce several options of TA layouts. Further, quantitative and qualitative evaluation tools such as color maps, iso-surfaces, and dose volume histogram (DVH) curves, are applied to choose the layouts that achieve the optimal distribution of TTFields therapy for each patient. Finally, each patient receives two SBTP to allow switching between the layouts in order to mitigate the risk of skin irritation. RESULTS Over 60 image sets from GBM patients were used to test the SBTP system. Our experience demonstrates a viable working framework that has the potential to boost TTFields delivery to target ROIs. CONCLUSION This working framework offers qualitative and quantitative tools for SBTP and streamlines the process of personalized treatment, allowing physicians to optimize treatment with TTFields therapy. Additionally, this system provides tools for developing an adaptive patient-specific SBTP in response to any clinical need (e.g., disease progression).
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Naveh A, Shapira N, Mooney C, Berger B. The Effect of Body Mass Index on Tumor Treating Fields (TTFields) Intensity Distribution in the Lungs. Int J Radiat Oncol Biol Phys 2023; 117:e44. [PMID: 37785428 DOI: 10.1016/j.ijrobp.2023.06.744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
PURPOSE/OBJECTIVE(S) Tumor Treating Fields (TTFields) therapy is a locoregional, noninvasive antimitotic cancer treatment modality. TTFields are electric fields that disrupt processes critical for cancer cell viability and tumor progression. They are generated by a portable medical device and delivered noninvasively to the tumor via two pairs of orthogonally placed transducer arrays. TTFields therapy is currently FDA-approved for recurrent and newly diagnosed glioblastoma and pleural mesothelioma, with ongoing studies in other solid tumor types including non-small cell lung cancer (NSCLC). In the phase 3 LUNAR study (NCT02973789), TTFields therapy demonstrated an improvement in overall survival when added to NSCLC standard of care. TTFields effectiveness depends upon several factors, including field intensity; thus, it is relevant to assess the impact of body mass index (BMI) on the distribution of TTFields in the lungs. This study utilized simulation-based approaches to assess the impact of BMI on electric field intensity distribution in the lungs. MATERIALS/METHODS Three computerized female phantom models (with BMIs of 22, 26 and 30), were used to simulate electric field intensity. Two different arrays sizes (small [13 disks] and large [20 disks]) were applied to the thoracic region of the models. An electric field intensity distribution map for each model was generated, and electric field intensity values across the entirety of the lungs were analyzed. RESULTS Electric field intensities were above 1 V/cm (amplitude), which is typically considered a sufficient level of TTFields dose to achieve a therapeutic effect, in all lobes in the lungs for all BMI models when large arrays were used. Therapeutic intensities were achieved in all lobes with the small arrays in all but one model (BMI 30), where intensities fell slightly below 1 V/cm in the right middle lobe. CONCLUSION Results from this simulation-based study demonstrate that delivery of TTFields at therapeutic intensities is feasible even in patients with a high BMI, provided the appropriately sized array is used. These findings support ongoing clinical studies of TTFields therapy in lung cancer, including the recently completed LUNAR study in advanced NSCLC, and could facilitate optimization of therapeutic TTFields delivery to individual patients, based on their BMI.
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Berger B, Lavaf A, DeRose PM, Whitley A, Ballo MT, Peter J, Abdullah H, Abraham Y, Bakalo O, Lipson A, Mooney C, Naveh A, Shamir R, Shapira N, Stepovoy K, Swaim J, Urman N, Zigelman G, Shi W. Patient-Specific Segmentation-Based Treatment Planning vs. NovoTAL for TTFields Therapy in Glioblastoma. Int J Radiat Oncol Biol Phys 2023; 117:e87. [PMID: 37786202 DOI: 10.1016/j.ijrobp.2023.06.841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
PURPOSE/OBJECTIVE(S) Patients treated with Tumor Treating Fields (TTFields) therapy for glioblastoma (GBM) have array layouts planned by NovoTAL. NovoTAL requires morphometric inputs and maximizes field intensity at the tumor. Patient-specific segmentation-based treatment planning (SBTP) software uses segmentation-based plans to maximize power density at defined regions of interest (ROIs). This technical analysis compared expected local minimum power density (LMiPD; mW/cm3) and local minimum field intensity (LMiFI; V/cm) delivered to ROIs with array layouts planned with SBTP vs NovoTAL. We hypothesized that SBTP has the potential to increase LMiPD and LMiFI to ROIs vs NovoTal. MATERIALS/METHODS 37 patients from 5 sites who received TTFields therapy for GBM using NovoTAL were included. Treatment plans using the prescribed/treated NovoTAL layouts were created with SBTP. De novo SBTP layouts were also created. Three ROIs representing the original treated GBM (CTV), high risk margin around the GBM (CTV-2), and recurrent GBM (CTV-R) were created. Plans were optimized to CTV. SBTP vs NovoTAL LMiPD and LMiFI volumetrics to ROIs were evaluated. LMiPD and LMiFI were normalized with the delivered current from the treated NovoTAL layout. Layout rankings based on LMiPD and LMiFI, average LMiPD and LMiFI, D95, D5, DVHs, and voxel-by-voxel LMiPD and LMiFI for SBTP derived from NovoTAL layouts were compared to de novo SBTP layouts (paired t-tests). RESULTS Average LMiPD (1.551 vs 1.194) and LMiFI (1.115 vs 0.978) to CTV were significantly higher with SBTP vs NovoTAL (P < 0.0001 for each). Average LMiPD (1.445 vs 1.164) and LMiFI (1.197 vs 1.077) to CTV-2 were also higher (P < 0.0001 for each). There was a positive trend to higher average LMiPD (1.203 vs 1.157; P = 0.212) and LMiFI (1.103 vs 1.090; P = 0.311) to CTV-R. Top ranked overall layouts by LMiPD to CTV were SBTP layouts (97%; n = 36). Percent ratio ([SBTP-NovoTAL]/NovoTAL*100) D95 for LMiPD was 34% (to CTV), 24% (to CTV-2), and 5% (to CTV-R) and for LMiFI was 16%, 12%, and 2% respectively. Percent ratio D5 for LMiPD was 31%, 24%, and 3% and for LMiFI was 14%, 9%, and 0%, respectively. For a given percent CTV volume, minimum LMiPD and LMiFI were higher with SBTP (95%, n = 35; DVH curves shifted to right). SBTP yielded higher LMiPD and LMiFI to the majority of voxels within the CTV (95%, n = 35). With SBTP, LMiPD to CTV was significantly higher than to CTV-R (P < 0.001). CONCLUSION Overall, these data demonstrate that SBTP compared to NovoTAL yielded higher expected average LMiPD and LMiFI, D95, D5, and percent voxel LMiPD and LMiFI to defined ROIs. Higher LMiPD and LMiFI delivered to CTV vs CTV-R with SBTP suggests a benefit to re-planning if the GBM recurs. Given previous reports showing that higher LMiPD and LMiFI are positively correlated with improved overall and progression free survival, patient-specific SBTP may lead to improved clinical outcomes for GBM patients vs NovoTAL.
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Affiliation(s)
| | - A Lavaf
- Desert Regional Medical Center, Palm Springs, CA
| | - P M DeRose
- Methodist Richardson Cancer Center, Richardson, TX
| | - A Whitley
- Central Alabama Radiation Oncology, Montgomery, AL
| | - M T Ballo
- West Cancer Center and Research Institute, Germantown, TN
| | - J Peter
- Methodist Health System, Richardson, TX
| | | | | | | | | | | | | | | | | | | | - J Swaim
- Novocure, Inc., Portsmouth, NH
| | | | | | - W Shi
- Thomas Jefferson University Hospital, Philadelphia, PA
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Mehl A, von Laue B, Trapp B, Gerlach K, Reif M, Pretzer K, Zerm R, Berger B, Gutenbrunner C, Kröz M. The Anthroposophic Artistic Movement Assessment for Eurythmy Therapy (AART-ASSESS-EuMove). A validation study. Complement Ther Med 2023; 76:102957. [PMID: 37286140 DOI: 10.1016/j.ctim.2023.102957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 05/28/2023] [Accepted: 05/31/2023] [Indexed: 06/09/2023] Open
Abstract
OBJECTIVE Eurythmy Therapy (ET) is a mindfulness oriented therapy developed in the context of anthroposophic medicine. Despite commonly used in practice, it remains unclear whether active participation (Inner Correspondence) during ET can be observed in eurythmy gestures (EGest). So far, no validated peer-report instrument to evaluate EGest exists. METHOD To validate an 83-item ET peer-report scale, a nested study on a sample of n = 82 breast cancer survivors with cancer-related fatigue was conducted. EGest were evaluated twice, at baseline and at 10-week follow-up, by peer-reports from two separate therapists. Interrater-reliability (IRR) was estimated by Cohen's weighted kappa (κw) across all items. Additionally, reliability-(RA) and principal component analyses (PCA) were conducted. Patients completed two self-report scales: Satisfaction with ET (SET) and Inner Correspondence with the Movement Therapy (ICPH). RESULTS IRR was greater than or equal (κw ≥ 0.25) for 41 items (49.3%) with a mean weighted kappa of κ̅w = 0.40 (SD = 0.17, range = 0.25-0.85). RA resulted in the exclusion of 25 items with insufficient item-total correlations < 0.40. A PCA with 16 items revealed 3 subscales: 1. Mindfulness in Movement (8 items), 2. Motor Skills (5 items), 3. Walking Pattern (3items) explaining 63.86% of total variance. Internal consistency (Cronbach's alpha) was high for the sum score with α = 0.89 and for the subscales with α = 0.88, 0.86 and 0.84 respectively. Significant small to moderate subscale correlations were found ranging from r = 0.29-0.63 (all p < 0.01). Mindfulness in Movement correlated with Inner Correspondence (r = 0.32) and with Satisfaction with ET (r = - 0.25, both p < 0.05). CONCLUSIONS The new AART-ASSESS-EuMove is the first consistent and reliable peer-report instrument to evaluate EGest. It shows associations between peer-reported Mindful Movement and patients' self-reported ICPH and SET.
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Affiliation(s)
- A Mehl
- Research Institute Havelhöhe, Kladower Damm 221, 14089 Berlin, Germany.
| | - B von Laue
- AnthroMed Öschelbronn - Centre for Integrative Medicine, 75233 Niefern-Öschelbronn, Germany
| | - B Trapp
- Praxis Frauenheilkunde - Lebenswunder, Berlin-Havelhöhe, 14089 Berlin, Germany
| | - K Gerlach
- Institute for Eurythmy Therapy, Research Institute of Arts Therapy, Alanus Hochschule, Villestraße 3, 53347 Alfter, Germany
| | - M Reif
- Society for Clinical Research, Hardenbergstraße 20, 10623 Berlin, Germany
| | - K Pretzer
- Raumzeitwerker, Practice for Eurythmy Therapy, 10967 Berlin, Germany
| | - R Zerm
- Research Institute Havelhöhe, Kladower Damm 221, 14089 Berlin, Germany
| | - B Berger
- Institute for Integrative Medicine, University Witten/Herdecke, Gerhard Kienle Weg 8, 58313 Herdecke, Germany
| | - C Gutenbrunner
- Clinic for Rehabilitative Medicine, Hannover Medical School, Carl-Neuberg-Straße 1, 30625 Hannover, Germany
| | - M Kröz
- Research Institute Havelhöhe, Kladower Damm 221, 14089 Berlin, Germany; Institute for Integrative Medicine, University Witten/Herdecke, Gerhard Kienle Weg 8, 58313 Herdecke, Germany; Hospital Arlesheim, Research Department, Pfeffinger Weg 1, 4144 Arlesheim, Switzerland
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Mannes M, Halbgebauer R, Wohlgemuth L, Christian Messerer DA, Savukoski S, Schultze A, Berger B, Knapp CL, Schmidt CQ, Fürst D, Hillmer M, Siebert R, Eriksson O, Persson B, Nilsson B, Ekdahl KN, Huber-Lang M. Combined Heterozygous Genetic Variations in Complement C2 and C8B: An Explanation for Multidimensional Immune Imbalance? J Innate Immun 2023; 15:412-427. [PMID: 36858027 PMCID: PMC10015110 DOI: 10.1159/000528607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 12/02/2022] [Indexed: 03/03/2023] Open
Abstract
The complement system plays a crucial role in host defense, homeostasis, and tissue regeneration and bridges the innate and the adaptive immune systems. Although the genetic variants in complement C2 (c.839_849+17del; p.(Met280Asnfs*5)) and C8B (c.1625C>T; p.(Thr542Ile)) are known individually, here, we report on a patient carrying their combination in a heterozygous form. The patient presented with a reduced general condition and suffers from a wide variety of autoimmune diseases. While no autoimmune disease-specific autoantibodies could be detected, genetic analysis revealed abnormalities in the two complement genes C2 and C8B. Therefore, we performed a comprehensive investigation of the innate immune system on a cellular and humoral level to define the functional consequences. We found slightly impaired functionality of neutrophils and monocytes regarding phagocytosis and reactive oxygen species generation and a diminished expression of the C5aR1. An extensive complement analysis revealed a declined activation potential for the alternative and classical pathway. Reconstitution with purified C2 and C8 into patient serum failed to normalize the dysfunction, whereas the addition of C3 improved the hemolytic activity. In clinical transfer, in vitro supplementation of the patient's plasma with FFP as a complement source could fully restore full complement functionality. This study describes for the first time a combined heterozygous genetic variation in complement C2 and C8B which, however, cannot fully explain the overall dysfunctions and calls for further complement deficiency research and corresponding therapies.
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Affiliation(s)
- Marco Mannes
- Institute of Clinical and Experimental Trauma Immunology, University Hospital of Ulm, Ulm, Germany
| | - Rebecca Halbgebauer
- Institute of Clinical and Experimental Trauma Immunology, University Hospital of Ulm, Ulm, Germany
| | - Lisa Wohlgemuth
- Institute of Clinical and Experimental Trauma Immunology, University Hospital of Ulm, Ulm, Germany
| | - David Alexander Christian Messerer
- Institute of Clinical and Experimental Trauma Immunology, University Hospital of Ulm, Ulm, Germany
- Department of Transfusion Medicine and Hemostaseology, Friedrich-Alexander University Erlangen-Nürnberg, University Hospital Erlangen, Erlangen, Germany
| | - Susa Savukoski
- Institute of Clinical and Experimental Trauma Immunology, University Hospital of Ulm, Ulm, Germany
| | - Anke Schultze
- Institute of Clinical and Experimental Trauma Immunology, University Hospital of Ulm, Ulm, Germany
| | - Bettina Berger
- Institute of Clinical and Experimental Trauma Immunology, University Hospital of Ulm, Ulm, Germany
| | - Christiane Leonie Knapp
- Institute of Clinical and Experimental Trauma Immunology, University Hospital of Ulm, Ulm, Germany
| | - Christoph Q. Schmidt
- Institute of Pharmacology of Natural Products and Clinical Pharmacology, Ulm University, Ulm, Germany
| | - Daniel Fürst
- Institute of Clinical Transfusion Medicine and Immunogenetics Ulm, German Red Cross Blood Transfusion Service, Baden-Württemberg – Hessen, Ulm, and University Hospital of Ulm, Ulm, Germany
- Institute of Transfusion Medicine, Ulm University, Ulm, Germany
| | - Morten Hillmer
- Institute of Human Genetics, Ulm University and Ulm University Hospital Center, Ulm, Germany
| | - Reiner Siebert
- Institute of Human Genetics, Ulm University and Ulm University Hospital Center, Ulm, Germany
| | - Oskar Eriksson
- Department of Immunology, Genetics and Pathology (IGP), Rudbeck Laboratory C5:3, Uppsala University, Uppsala, Sweden
| | - Barbro Persson
- Department of Immunology, Genetics and Pathology (IGP), Rudbeck Laboratory C5:3, Uppsala University, Uppsala, Sweden
| | - Bo Nilsson
- Department of Immunology, Genetics and Pathology (IGP), Rudbeck Laboratory C5:3, Uppsala University, Uppsala, Sweden
| | - Kristina Nilsson Ekdahl
- Department of Immunology, Genetics and Pathology (IGP), Rudbeck Laboratory C5:3, Uppsala University, Uppsala, Sweden
- Linnaeus Center of Biomaterials Chemistry, Linnaeus University, Kalmar, Sweden
| | - Markus Huber-Lang
- Institute of Clinical and Experimental Trauma Immunology, University Hospital of Ulm, Ulm, Germany
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Ngo HTT, Cavagnaro TR, Jewell N, Brien CJ, Berger B, Watts-Williams SJ. High-throughput shoot phenotyping reveals temporal growth responses to nitrogen and inorganic and organic phosphorus sources in tomato. AoB Plants 2023; 15:plad011. [PMID: 37113305 PMCID: PMC10129286 DOI: 10.1093/aobpla/plad011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 03/06/2023] [Indexed: 06/19/2023]
Abstract
The application of nitrogen (N) and phosphorus (P) fertilizers to soils is required to maintain crop yields, so the sufficient and timely delivery of nutrients to match crop demand is important in fertilizer management. We quantified temporal growth responses of tomato plants with different rates of N and P application using high-throughput shoot phenotyping. The tomato plants were grown in soil that had organic, inorganic or a combination of sources of P incorporated. Additional N was added to each pot at low and high rates, 13 days after planting. At the same rate of total P application, the inorganic P source resulted in greater shoot growth at the early time points. Later on, the plants supplied with organic or mixed P sources grew faster than those that received the inorganic P source, resulting in comparable shoot biomass in all treatments at the time of destructive harvest. The shoot phenotyping data demonstrated that readily available soil P was important for early tomato growth while available N was more important in later stages of vegetative growth. These results suggest that a fertilizer formulation of combined inorganic and organic P sources may be able to sustain rapid and great shoot growth in tomato plants, while also reducing additional N input.
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Affiliation(s)
- Hue T T Ngo
- The Waite Research Institute and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, South Australia, Australia
- Research Institute for Forest Ecology and Environment, Vietnamese Academy of Forest Sciences, Duc Thang, Tu Liem, Hanoi, Vietnam
| | - Timothy R Cavagnaro
- The Waite Research Institute and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, South Australia, Australia
| | - Nathaniel Jewell
- The Waite Research Institute and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, South Australia, Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Christopher J Brien
- The Waite Research Institute and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, South Australia, Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Bettina Berger
- The Waite Research Institute and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, South Australia, Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, Glen Osmond, South Australia, Australia
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Mascher A, Pelzer F, Duncan LJ, Martin DD, Baumgartner S, Berger B. The Introspective Patient Experience of Mistletoe Therapy in Cancer: A Qualitative Study. Integr Cancer Ther 2023; 22:15347354231198474. [PMID: 37731253 PMCID: PMC10515602 DOI: 10.1177/15347354231198474] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 08/02/2023] [Accepted: 08/15/2023] [Indexed: 09/22/2023] Open
Abstract
INTRODUCTION The introspective experience of cancer patients using mistletoe therapy has received little scientific interest, although it is crucial for a holistic understanding of this therapy. This study contributes to patient-centered research and treatment by documenting the subjective experiences of individuals undergoing mistletoe therapy. METHODS In this qualitative, explorative study, 20 outpatients with a history of various cancer types were recruited from Arlesheim Hospital (Arlesheim, Switzerland). All patients received subcutaneous mistletoe therapy for at least 2 years (median 7.5 years). Data was collected through 2 semi-structured, in-depth interviews per patient. Qualitative content analysis was applied to examine the data. The individual experience of mistletoe therapy was analyzed in relation to 6 predefined levels of human experience: physical, vital, emotional, mental, spiritual and social. In addition, 3 further aspects, considered as cross-dimensional perspectives, emerged out of the material: warmth, immune strengthening, and general wellbeing. RESULTS Data analysis revealed considerable heterogeneity among patients' experiences with mistletoe therapy. The importance of specific aspects became apparent, such as increased vitality to manage daily life, greater emotional and mental stability, warmth as a multidimensional phenomenon, feelings of safety and protection through mistletoe therapy, heightened self-awareness and improved self-care, as well as sensations of spiritual connectedness. CONCLUSIONS Prior to this study it had not been shown that cancer patients using mistletoe therapy do have observations on different levels of experience. These results may lead to a deeper understanding of patients receiving mistletoe therapy, enabling them to be supported in a more holistic way both during mistletoe treatment and on their life path. Further investigations into the effects of mistletoe therapy on the emotional, mental, and spiritual level are warranted.
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Affiliation(s)
- Annika Mascher
- Witten/Herdecke University, Witten, Germany
- Society for Cancer Research, Arlesheim, Switzerland
- Klinik Arlesheim, Arlesheim, Switzerland
| | - Florian Pelzer
- Witten/Herdecke University, Witten, Germany
- Society for Cancer Research, Arlesheim, Switzerland
| | | | | | - Stephan Baumgartner
- Witten/Herdecke University, Witten, Germany
- Society for Cancer Research, Arlesheim, Switzerland
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Hamideh Kerdar S, Gwiasda M, Berger B, Rathjens L, Schwarz S, Jenetzky E, Martin DD. Predictors of sustained use of mobile health applications: Content analysis of user perspectives from a fever management app. Digit Health 2023; 9:20552076231180418. [PMID: 37312942 PMCID: PMC10259139 DOI: 10.1177/20552076231180418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Accepted: 05/19/2023] [Indexed: 06/15/2023] Open
Abstract
Objectives Mobile health applications could be means of educating and changing behaviours of their users. Their features and qualities determine the sustainability of use. The FeverApp with two main features of information and documentation is a research-based app. In this observational cohort study, to evaluate the influential predictors of use, users' feedback on the FeverApp, were analyzed. Methods Feedback is given using a structured questionnaire, four Likert items and two open questions regarding positive and negative impressions, available via app menu. Conventional content analysis (inductive approach) on the two open questions was performed. Comments were grouped into 12 codes. These codes were grouped hierarchically in an iterative process into nine subcategories and lastly into two main categories 'format' and 'content'. Descriptive and quantitative analysis were performed. Results Out of 8243 users, 1804 of them answered the feedback questionnaire. The features of the app (N = 344), followed by the information aspect (N = 330) were most frequently mentioned. Documentation process (N = 226), request for new features or improvement of the current ones (N = 193), and functioning (N = 132) were also highlighted in users' feedback. App's ease of use, design and being informative were important for the users. The first impression of the app seems important as the majority of feedback were given during the first month of using the app. Conclusion In-app feedback function could highlight shortcomings and strengths of mobile health apps. Taking users' feedback into consideration could increase the chance of sustained use. Besides ease of use and clear, likeable designs, users want apps that serve their needs while saving time.
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Affiliation(s)
- Sara Hamideh Kerdar
- Faculty of Health/School of Medicine, Witten/Herdecke University, Witten, Germany
| | - Moritz Gwiasda
- Faculty of Health/School of Medicine, Witten/Herdecke University, Witten, Germany
| | - Bettina Berger
- Faculty of Health/School of Medicine, Witten/Herdecke University, Witten, Germany
| | - Larisa Rathjens
- Faculty of Health/School of Medicine, Witten/Herdecke University, Witten, Germany
| | - Silke Schwarz
- Faculty of Health/School of Medicine, Witten/Herdecke University, Witten, Germany
| | - Ekkehart Jenetzky
- Faculty of Health/School of Medicine, Witten/Herdecke University, Witten, Germany
- Department of Child and Adolescent Psychiatry and Psychotherapy, University Medical Center of the Johannes-Gutenberg-University, Mainz, Germany
| | - David D Martin
- Faculty of Health/School of Medicine, Witten/Herdecke University, Witten, Germany
- Department of Pediatrics, Eberhard-Karls University Tübingen, Tübingen, Germany
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10
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Hackert B, Lumma A, Raettig T, Berger B, Weger U. Towards a re‐conceptualization of flow in social contexts. J Theory Soc Behav 2022. [DOI: 10.1111/jtsb.12362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Benedikt Hackert
- Department of Psychology and Psychotherapy Witten/Herdecke University Witten Germany
| | - Anna‐Lena Lumma
- Department of Psychology and Psychotherapy Witten/Herdecke University Witten Germany
| | - Tim Raettig
- Institute of Psychology III – Psychological Methods, Cognition and Application University of Würzburg Würzburg Germany
| | - Bettina Berger
- Chair of Medical Theory, Integrative and Anthroposophic Medicine Department of Health Witten/Herdecke University Herdecke Germany
| | - Ulrich Weger
- Department of Psychology and Psychotherapy Witten/Herdecke University Witten Germany
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11
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Verse T, Verse JM, Meyer JE, Grundmann T, Külkens C, Berger B. [Teaching otorhinolaryngology in times of COVID-19: to what extent can digital formats replace face-to-face teaching?]. HNO 2022; 70:666-674. [PMID: 35896721 PMCID: PMC9328622 DOI: 10.1007/s00106-022-01200-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/30/2022] [Indexed: 11/28/2022]
Abstract
OBJECTIVE Due to the coronavirus disease 19 (COVID-19) pandemic, postgraduate training in otorhinolaryngology in 2020 was transferred completely from face-to-face to digital teaching. This paper assesses whether this change was possible without a reduction in the quality of teaching and learning. METHODS Results of final written examinations were compared for the years 2016-2020, and the results of the teaching evaluation by the students for 2017-2020. The evaluation by students in 2020 included additional questions related to the switch from face-to-face to digital teaching. Additionally, the lecturers and teachers were asked for their assessments. RESULTS Results of the final written examination did not show any significant differences between 2016-2019 and 2020. Students were highly satisfied with the digital format, but values did not reach the level of former years with face-to-face-teaching. Especially the interaction with patients and the teaching of manual skills were rated lower in the digital format. Lecturers emphasized the additional workload for preparation of digital teaching. CONCLUSION The results of written examinations showed no difference between digital and face-to-face teaching. Online communication and interaction were reduced and regarded as cumbersome by students and faculty. Digital solutions providing more interaction and active participation are required. The digital format is more appropriate for teaching basic knowledge than for teaching practical skills.
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Affiliation(s)
- T Verse
- Semmelweis Universität Budapest, Medizinische Fakultät, Asklepios Campus Hamburg (ACH), Budapest, Ungarn.
- Abteilung für HNO-Heilkunde, Kopf- und Halschirurgie, Asklepios Klinikum Harburg, Eißendorfer Pferdeweg 52, 21075, Hamburg, Deutschland.
| | - J M Verse
- Abteilung für HNO-Heilkunde, Kopf- und Halschirurgie, Asklepios Klinikum Harburg, Eißendorfer Pferdeweg 52, 21075, Hamburg, Deutschland
| | - J E Meyer
- Semmelweis Universität Budapest, Medizinische Fakultät, Asklepios Campus Hamburg (ACH), Budapest, Ungarn
- Abteilung für HNO-Heilkunde, Kopf- und Halschirurgie, Plastische Operationen, Asklepios Klinik St. Georg Hamburg, Hamburg, Deutschland
| | - T Grundmann
- Semmelweis Universität Budapest, Medizinische Fakultät, Asklepios Campus Hamburg (ACH), Budapest, Ungarn
- Abteilung für Hals‑, Nasen‑, Ohrenheilkunde, Kopf- und Halschirurgie. Asklepios Klinik Altona, Hamburg, Deutschland
| | - C Külkens
- Semmelweis Universität Budapest, Medizinische Fakultät, Asklepios Campus Hamburg (ACH), Budapest, Ungarn
- Abteilung für HNO-Heilkunde, Kopf- und Halschirurgie, Plastische Operationen, Kinder-HNO, Asklepios Klinik Nord - Heidberg, Hamburg, Deutschland
| | - B Berger
- Semmelweis Universität Budapest, Medizinische Fakultät, Asklepios Campus Hamburg (ACH), Budapest, Ungarn
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12
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Asif MA, Garcia M, Tilbrook J, Brien C, Dowling K, Berger B, Schilling RK, Short L, Trittermann C, Gilliham M, Fleury D, Roy SJ, Pearson AS. Corrigendum to: Identification of salt tolerance QTL in a wheat RIL mapping population using destructive and non-destructive phenotyping. Funct Plant Biol 2022; 49:672. [PMID: 35675208 DOI: 10.1071/fp20167_co] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Bread wheat (Triticum aestivum L.) is one of the most important food crops, however it is only moderately tolerant to salinity stress. To improve wheat yield under saline conditions, breeding for improved salinity tolerance of wheat is needed. We have identified nine quantitative trail loci (QTL) for different salt tolerance sub-traits in a recombinant inbred line (RIL) population, derived from the bi-parental cross of Excalibur × Kukri. This population was screened for salinity tolerance subtraits using a combination of both destructive and non-destructive phenotyping. Genotyping by sequencing (GBS) was used to construct a high-density genetic linkage map, consisting of 3236 markers, and utilised for mapping QTL. Of the nine mapped QTL, six were detected under salt stress, including QTL for maintenance of shoot growth under salinity (QG ( 1-5 ) .asl -5A , QG ( 1-5 ) .asl -7B ) sodium accumulation (QNa.asl -2A ), chloride accumulation (QCl.asl -2A , QCl.asl -3A ) and potassium : sodium ratio (QK :Na.asl -2DS2 ). Potential candidate genes within these QTL intervals were shortlisted using bioinformatics tools. These findings are expected to facilitate the breeding of new salt tolerant wheat cultivars. Soil salinity causes major yield losses in bread wheat, which is moderately tolerant to salinity stress. Using high throughput genotyping and phenotyping techniques, we identified quantitative trail loci (QTL) for different salt tolerance sub-traits in bread wheat and shortlisted potential candidate genes. These QTL and candidate genes may prove useful in breeding for salt tolerant wheat cultivars.
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Berger B, Hanna G, Posner M, Genden E, Del Vecchio Fitz C, Naber S, Kuperwasser C. Detection of Occult Recurrence Using Circulating HPV Tumor DNA Among Patients Treated for HPV-driven Oropharyngeal Squamous Cell Carcinoma. Int J Radiat Oncol Biol Phys 2022. [DOI: 10.1016/j.ijrobp.2021.12.016] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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14
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Tanner F, Tonn S, de Wit J, Van den Ackerveken G, Berger B, Plett D. Sensor-based phenotyping of above-ground plant-pathogen interactions. Plant Methods 2022; 18:35. [PMID: 35313920 PMCID: PMC8935837 DOI: 10.1186/s13007-022-00853-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Accepted: 02/08/2022] [Indexed: 05/20/2023]
Abstract
Plant pathogens cause yield losses in crops worldwide. Breeding for improved disease resistance and management by precision agriculture are two approaches to limit such yield losses. Both rely on detecting and quantifying signs and symptoms of plant disease. To achieve this, the field of plant phenotyping makes use of non-invasive sensor technology. Compared to invasive methods, this can offer improved throughput and allow for repeated measurements on living plants. Abiotic stress responses and yield components have been successfully measured with phenotyping technologies, whereas phenotyping methods for biotic stresses are less developed, despite the relevance of plant disease in crop production. The interactions between plants and pathogens can lead to a variety of signs (when the pathogen itself can be detected) and diverse symptoms (detectable responses of the plant). Here, we review the strengths and weaknesses of a broad range of sensor technologies that are being used for sensing of signs and symptoms on plant shoots, including monochrome, RGB, hyperspectral, fluorescence, chlorophyll fluorescence and thermal sensors, as well as Raman spectroscopy, X-ray computed tomography, and optical coherence tomography. We argue that choosing and combining appropriate sensors for each plant-pathosystem and measuring with sufficient spatial resolution can enable specific and accurate measurements of above-ground signs and symptoms of plant disease.
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Affiliation(s)
- Florian Tanner
- Australian Plant Phenomics Facility, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae, SA Australia
| | - Sebastian Tonn
- Department of Biology, Plant-Microbe Interactions, Utrecht University, 3584CH Utrecht, The Netherlands
| | - Jos de Wit
- Department of Imaging Physics, Delft University of Technology, Lorentzweg 1, 2628 CJ Delft, The Netherlands
| | - Guido Van den Ackerveken
- Department of Biology, Plant-Microbe Interactions, Utrecht University, 3584CH Utrecht, The Netherlands
| | - Bettina Berger
- Australian Plant Phenomics Facility, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae, SA Australia
| | - Darren Plett
- Australian Plant Phenomics Facility, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae, SA Australia
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15
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Raak CK, Scharbrodt W, Berger B, Büssing A, Schönenberg-Tu A, Martin DD, Robens S, Ostermann T. Hypericum perforatum to Improve Postoperative Pain Outcome After Monosegmental Spinal Sequestrectomy (HYPOS): Results of a Randomized, Double-Blind, Placebo-Controlled Trial. J Integr Complement Med 2022; 28:407-417. [PMID: 35171041 DOI: 10.1089/jicm.2021.0389] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Introduction: Patients undergoing lumbar spine surgery often suffer from severe radicular postoperative pain leading to the prescription of high-dose opioids. In Integrative Medicine, Hypericum perforatum is known as a remedy to relieve pain caused by nerve damage. Objectives: This trial investigated whether homeopathic Hypericum leads to a reduction in postoperative pain and a decrease in pain medication compared with placebo. Design: Randomized double blind, monocentric, placebo controlled clinical trial. Settings/Location: Department of Neurosurgery, Community Hospital Herdecke. Subjects: Inpatients undergoing lumbar sequestrectomy surgery. Interventions: Homeopathic treatment versus placebo in addition to usual pain management. Outcomes Measures: Primary endpoint was pain relief measured with a visual analog scale. Secondary endpoints were the reduction of inpatient postoperative analgesic medication and change in sensory and affective pain perception. Results: Baseline characteristics were comparable between the groups. Pain perception between baseline and day 3 did not significantly differ between the study arms. With respect to pain medication, total morphine equivalent doses did not differ significantly. However, a statistical trend and a moderate effect (d = 0.432) in the decrease of pain medication consumption in favor of the Hypericum group was observed. Conclusion: This is the first trial of homeopathy that evaluated the efficacy of Hypericum C200 after lumbar monosegmental spinal sequestrectomy. Although no significant differences between the groups could be shown, we found that patients who took potentiated Hypericum in addition to usual pain management showed lower consumption of analgesics. Further investigations, especially with regard to pain medication, should follow to better classify the described analgesic reduction. Clinical Trial Registration Number: German Clinical Trials Register No: DRKS00007913.
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Affiliation(s)
- Christa K Raak
- Institute of Integrative Medicine, Witten/Herdecke University, Herdecke, Germany.,Integrative Neuromedicine, Community Hospital Herdecke, Witten/Herdecke University, Herdecke, Germany
| | - Wolfram Scharbrodt
- Integrative Neuromedicine, Community Hospital Herdecke, Witten/Herdecke University, Herdecke, Germany
| | - Bettina Berger
- Institute of Integrative Medicine, Witten/Herdecke University, Herdecke, Germany
| | - Arndt Büssing
- Institute of Integrative Medicine, Witten/Herdecke University, Herdecke, Germany
| | - Anna Schönenberg-Tu
- Integrative Neuromedicine, Community Hospital Herdecke, Witten/Herdecke University, Herdecke, Germany
| | - David D Martin
- Institute of Integrative Medicine, Witten/Herdecke University, Herdecke, Germany
| | - Sibylle Robens
- Chair of Research Methodology and Statistics in Psychology, Witten/Herdecke University, Witten, Germany
| | - Thomas Ostermann
- Chair of Research Methodology and Statistics in Psychology, Witten/Herdecke University, Witten, Germany
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16
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Berger B, Martin D, Jenetzky E, Schmelzer K. Fasting intervention for people with type 1 diabetes (T1D) as patient-initiated research. Eur J Integr Med 2021. [DOI: 10.1016/j.eujim.2021.101907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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17
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Raak C, Berger B, Martin D, Boehm K, Scharbrodt W. The use of calf compresses for gentle fever reduction-A scoping review. Eur J Integr Med 2021. [DOI: 10.1016/j.eujim.2021.101969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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18
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Peles O, Atya H, Shamir R, Berger B, Bomzon Z. Segmentation of the Upper Torso for Lung Cancer TTFields Treatment Planning. Int J Radiat Oncol Biol Phys 2021. [DOI: 10.1016/j.ijrobp.2021.07.593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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19
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Glozman Y, Faran R, Shamir R, Berger B, Bomzon Z. Creating Computational Models for Planning TTFields Treatment for Tumors in the Infratentorial Brain. Int J Radiat Oncol Biol Phys 2021. [DOI: 10.1016/j.ijrobp.2021.07.587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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20
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Salomon MJ, Watts-Williams SJ, McLaughlin MJ, Brien CJ, Jewell N, Berger B, Cavagnaro TR. Evaluation of commercial composts and potting mixes and their ability to support arbuscular mycorrhizal fungi with maize (Zea mays) as host plant. Waste Manag 2021; 134:187-196. [PMID: 34438193 DOI: 10.1016/j.wasman.2021.08.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Revised: 08/03/2021] [Accepted: 08/04/2021] [Indexed: 06/13/2023]
Abstract
The use of composts and potting mixes in food production systems is a promising way to counteract the effects of soil degradation and allows crop growth in soilless culture systems. Arbuscular mycorrhizal fungi (AMF) are a well-studied group of beneficial plant symbionts that have been shown to provide important ecosystem services. This study analysed the properties of nine commercial Australian potting mixes and composts and investigated whether they support colonization of maize plants with AMF in a plant growth bioassay. Physicochemical analyses showed highly variable properties between the substrates, with some extreme values that limited plant growth. DNA-based analysis revealed the presence of various plant pathogens, which was linked to inhibited plant growth in one substrate. Some substrates did not meet national quality standards, due to the concentrations of plant nutrients, heavy metals, or substrate maturity. Plant growth was mostly limited due to nitrogen immobilization, which required weekly fertilizer applications. Solid state 13C nuclear magnetic resonance spectroscopy gave insight into the decomposition state of the substrates. Plant roots in most substrates were well colonized with AMF (>60% root length), regardless of most substrate properties. Root colonization was negatively affected in only one substrate, likely due to ammonium toxicity. Results of this study show that not all commercial substrates adhered to national quality standards. Potting mixes and composts can support high mycorrhizal root colonization when plant growth is otherwise not limited.
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Affiliation(s)
- M J Salomon
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA 5064, Australia.
| | - S J Watts-Williams
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA 5064, Australia
| | - M J McLaughlin
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA 5064, Australia
| | - C J Brien
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA 5064, Australia; Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - N Jewell
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA 5064, Australia; Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - B Berger
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA 5064, Australia; Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - T R Cavagnaro
- The Waite Research Institute and The School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA 5064, Australia
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21
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Borjigin C, Schilling RK, Jewell N, Brien C, Sanchez-Ferrero JC, Eckermann PJ, Watson-Haigh NS, Berger B, Pearson AS, Roy SJ. Identifying the genetic control of salinity tolerance in the bread wheat landrace Mocho de Espiga Branca. Funct Plant Biol 2021; 48:1148-1160. [PMID: 34600599 DOI: 10.1071/fp21140] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Accepted: 08/04/2021] [Indexed: 06/13/2023]
Abstract
Salinity tolerance in bread wheat is frequently reported to be associated with low leaf sodium (Na+) concentrations. However, the Portuguese landrace, Mocho de Espiga Branca, accumulates significantly higher leaf Na+ but has comparable salinity tolerance to commercial bread wheat cultivars. To determine the genetic loci associated with the salinity tolerance of this landrace, an F2 mapping population was developed by crossing Mocho de Espiga Branca with the Australian cultivar Gladius. The population was phenotyped for 19 salinity tolerance subtraits using both non-destructive and destructive techniques. Genotyping was performed using genotyping-by-sequencing (GBS). Genomic regions associated with salinity tolerance were detected on chromosomes 1A, 1D, 4B and 5A for the subtraits of relative and absolute growth rate (RGR, AGR respectively), and on chromosome 2A, 2B, 4D and 5D for Na+, potassium (K+) and chloride (Cl-) accumulation. Candidate genes that encode proteins associated with salinity tolerance were identified within the loci including Na+/H+ antiporters, K+ channels, H+-ATPase, calcineurin B-like proteins (CBLs), CBL-interacting protein kinases (CIPKs), calcium dependent protein kinases (CDPKs) and calcium-transporting ATPase. This study provides a new insight into the genetic control of salinity tolerance in a Na+ accumulating bread wheat to assist with the future development of salt tolerant cultivars.
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Affiliation(s)
- Chana Borjigin
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Rhiannon K Schilling
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and Department of Primary Industries and Regions, South Australian Research and Development Institute, Urrbrae, SA 5064, Australia
| | - Nathaniel Jewell
- School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Chris Brien
- School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Juan Carlos Sanchez-Ferrero
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Paul J Eckermann
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Nathan S Watson-Haigh
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and South Australian Genomics Centre, South Australian Health and Medical Research Institute, Adelaide, SA 5000, Australia
| | - Bettina Berger
- School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Allison S Pearson
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Centre of Excellence in Plant Energy Biology, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Stuart J Roy
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Industrial Transformation Research Hub for Wheat in a Hot and Dry Climate, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia
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22
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Michalsen A, Jeitler M, Kessler CS, Steckhan N, Robens S, Ostermann T, Kandil FI, Stankewitz J, Berger B, Jung S, Kröz M, Büssing A. Yoga, Eurythmy Therapy and Standard Physiotherapy (YES-Trial) for Patients With Chronic Non-specific Low Back Pain: A Three-Armed Randomized Controlled Trial. J Pain 2021; 22:1233-1245. [PMID: 33892154 DOI: 10.1016/j.jpain.2021.03.154] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2020] [Revised: 03/19/2021] [Accepted: 03/29/2021] [Indexed: 10/21/2022]
Abstract
We aimed to evaluate the effects of yoga and eurythmy therapy compared to conventional physiotherapy exercises in patients with chronic low back pain. In a three-armed, multicentre, randomized controlled trial, patients with chronic low back pain were treated for 8 weeks in group sessions (75 minutes once per week). Primary outcome was patients' physical disability (measured by RMDQ) from baseline to week 8. Secondary outcome variables were pain intensity and pain-related bothersomeness (VAS), health-related quality of life (SF-12) and life satisfaction (BMLSS). Outcomes were assessed at baseline, after the intervention at 8 weeks and at a 16-week follow up. Data of 274 participants were used for statistical analyses. There were no significant differences between the three groups for the primary and all secondary outcomes. In all groups, RMDQ decreased comparably at 8 weeks, but did not reach clinical meaningfulness. Pain intensity and pain-related bothersomeness decreased, while quality of life increased in all 3 groups. In explorative general linear models for the SF-12's mental health component participants in the eurythmy arm benefitted significantly more compared to physiotherapy and yoga. Furthermore, within-group analyses showed improvements of SF-12 mental score for yoga and eurythmy therapy only. All interventions were safe. Clinical Trials Register: DRKS-ID: DRKS00004651 Perspective: This article presents the results of a multicentre three-armed randomized controlled trial on the clinical effects of three 8-week programs in patients with chronic low back pain. Compared to the 'gold standard' of conventional physiotherapeutic exercises, eurythmy therapy and yoga therapy lead to comparable symptomatic improvements in patients with chronic low back pain. However, the within-group effect sizes were small to moderate and did not reach clinical meaningfulness on patients' physical disability (RMDQ).
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Affiliation(s)
- Andreas Michalsen
- Institute of Social Medicine, Epidemiology and Health Economics, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin; Department of Internal and Integrative Medicine, Immanuel Hospital Berlin, Germany.
| | - Michael Jeitler
- Institute of Social Medicine, Epidemiology and Health Economics, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin; Department of Internal and Integrative Medicine, Immanuel Hospital Berlin, Germany
| | - Christian S Kessler
- Institute of Social Medicine, Epidemiology and Health Economics, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin; Department of Internal and Integrative Medicine, Immanuel Hospital Berlin, Germany
| | - Nico Steckhan
- Institute of Social Medicine, Epidemiology and Health Economics, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin; Department of Internal and Integrative Medicine, Immanuel Hospital Berlin, Germany
| | - Sibylle Robens
- Department of Psychology and Psychotherapy, Witten/Herdecke University, Germany
| | - Thomas Ostermann
- Department of Psychology and Psychotherapy, Witten/Herdecke University, Germany
| | - Farid I Kandil
- Institute of Social Medicine, Epidemiology and Health Economics, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin
| | | | - Bettina Berger
- Institute of Integrative Medicine, Witten/Herdecke University, Germany
| | - Sonny Jung
- Institute of Integrative Medicine, Witten/Herdecke University, Germany
| | - Matthias Kröz
- Research Institute Havelhöhe (FIH), Berlin, Germany; Institute of Integrative Medicine, Witten/Herdecke University, Germany; Department of Research and Sleep Medicine Arlesheim Hospital, Arlesheim, Switzerland
| | - Arndt Büssing
- Institute of Integrative Medicine, Witten/Herdecke University, Germany
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Röser K, Berger B, Widhalm M, Waser M. Enantioselective Synthesis of Acyclic Orthogonally Functionalized Compounds Bearing a Quaternary Stereocenter Using Chiral Ammonium Salt Catalysis. ChemistryOpen 2021; 10:756-759. [PMID: 34351087 PMCID: PMC8340069 DOI: 10.1002/open.202100162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 07/09/2021] [Indexed: 11/29/2022] Open
Abstract
We herein report an asymmetric protocol to access a series of orthogonally functionalized acyclic chiral target molecules containing a quaternary stereogenic center by carrying out the enantioselective α-alkylation of novel orthogonally functionalized dioxolane-containing cyanoacetates under chiral ammonium salt catalysis. By using just 1 mol % of Maruoka's spirocyclic ammonium salt catalysts enantioselectivities up to e.r.=97.5 : 2.5 could be achieved and further functional group manipulations of the products were carried out as well.
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Affiliation(s)
- Katharina Röser
- Johannes Kepler University LinzInstitute of Organic ChemistryAltenbergerstraße 694040LinzAustria
| | - Bettina Berger
- University of ViennaInstitute of Chemical CatalysisWähringer Strasse 381090ViennaAustria
| | - Michael Widhalm
- University of ViennaInstitute of Chemical CatalysisWähringer Strasse 381090ViennaAustria
| | - Mario Waser
- Johannes Kepler University LinzInstitute of Organic ChemistryAltenbergerstraße 694040LinzAustria
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24
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Matros A, Houston K, Tucker MR, Schreiber M, Berger B, Aubert MK, Wilkinson LG, Witzel K, Waugh R, Seiffert U, Burton RA. Genome-wide association study reveals the genetic complexity of fructan accumulation patterns in barley grain. J Exp Bot 2021; 72:2383-2402. [PMID: 33421064 DOI: 10.1093/jxb/erab002] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 01/08/2021] [Indexed: 05/27/2023]
Abstract
We profiled the grain oligosaccharide content of 154 two-row spring barley genotypes and quantified 27 compounds, mainly inulin- and neoseries-type fructans, showing differential abundance. Clustering revealed two profile groups where the 'high' set contained greater amounts of sugar monomers, sucrose, and overall fructans, but lower fructosylraffinose. A genome-wide association study (GWAS) identified a significant association for the variability of two fructan types: neoseries-DP7 and inulin-DP9, which showed increased strength when applying a novel compound ratio-GWAS approach. Gene models within this region included three known fructan biosynthesis genes (fructan:fructan 1-fructosyltransferase, sucrose:sucrose 1-fructosyltransferase, and sucrose:fructan 6-fructosyltransferase). Two other genes in this region, 6(G)-fructosyltransferase and vacuolar invertase1, have not previously been linked to fructan biosynthesis and showed expression patterns distinct from those of the other three genes, including exclusive expression of 6(G)-fructosyltransferase in outer grain tissues at the storage phase. From exome capture data, several single nucleotide polymorphisms related to inulin- and neoseries-type fructan variability were identified in fructan:fructan 1-fructosyltransferase and 6(G)-fructosyltransferase genes. Co-expression analyses uncovered potential regulators of fructan biosynthesis including transcription factors. Our results provide the first scientific evidence for the distinct biosynthesis of neoseries-type fructans during barley grain maturation and reveal novel gene candidates likely to be involved in the differential biosynthesis of various types of fructan in barley.
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Affiliation(s)
- Andrea Matros
- ARC Centre of Excellence in Plant Energy Biology, School of Agriculture, Food and Wine, University of Adelaide, Adelaide, South Australia, Australia
| | - Kelly Houston
- Cell and Molecular Sciences, The James Hutton Institute, Dundee, Scotland, UK
| | - Matthew R Tucker
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA, Australia
| | - Miriam Schreiber
- Cell and Molecular Sciences, The James Hutton Institute, Dundee, Scotland, UK
| | - Bettina Berger
- Australian Plant Phenomics Facility, The Plant Accelerator, School of Agriculture, Food and Wine, University of Adelaide, Adelaide, South Australia, Australia
| | - Matthew K Aubert
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA, Australia
| | - Laura G Wilkinson
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA, Australia
| | - Katja Witzel
- Leibniz Institute of Vegetable and Ornamental Crops, Großbeeren, Brandenburg, Germany
| | - Robbie Waugh
- Cell and Molecular Sciences, The James Hutton Institute, Dundee, Scotland, UK
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA, Australia
| | - Udo Seiffert
- Australian Plant Phenomics Facility, The Plant Accelerator, School of Agriculture, Food and Wine, University of Adelaide, Adelaide, South Australia, Australia
- Biosystems Engineering, Fraunhofer IFF, Magdeburg, Saxony-Anhalt, Germany
| | - Rachel A Burton
- ARC Centre of Excellence in Plant Energy Biology, School of Agriculture, Food and Wine, University of Adelaide, Adelaide, South Australia, Australia
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25
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Berger B, Jenetzky E, Köblös D, Stange R, Baumann A, Simstich J, Michalsen A, Schmelzer KM, Martin DD. Seven-day fasting as a multimodal complex intervention for adults with type 1 diabetes: Feasibility, benefit and safety in a controlled pilot study. Nutrition 2021; 86:111169. [PMID: 33636417 DOI: 10.1016/j.nut.2021.111169] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Revised: 12/24/2020] [Accepted: 01/16/2021] [Indexed: 11/18/2022]
Abstract
OBJECTIVES Intermittent as well as prolonged fasting are receiving considerable attention and appear favorable in conditions such as metabolic syndrome, type 2 diabetes, and rheumatic diseases. Fasting for individuals with type 1 diabetes (T1D) is generally considered too risky. However, the ability and possibility to change from carbohydrate- to ketone-based fuel supply might be relevant for individuals with T1D. The aim of this patient-led research was to investigate the feasibility, benefit, and safety of a 7-d multimodal fasting intervention in individuals with T1D. METHODS This was a non-randomized controlled pilot study, with 20 participants with T1D and 10 without the disease. Data acquisition took place before, after, and 4 mo after the intervention and daily during intervention. RESULTS Of the individuals with T1D, 19 finished fasting. A mean β-hydroxybutyrate as representative ketone body increased to 2.8 ± 1.9 mmol/L on day 7; whereas average glucose remained between 4.9 (±1.5) and 7.5 (±2.3) mmol/L (89 ± 27 and 136 ± 40 mg/dL). Mean daily insulin dose was adjusted from 24.4 (3-50) IU on the day before fasting to 7.6 (0-26.7) IU on day 7. Quality of life (WHO-5) normalized from 54 (±4.4) to 68.8 (±15; P = 0.01) after fasting. There was a decrease from before until the follow-up 4 mo later of weight from 77.6 (±20.4) to 76.6 (±20.9) kg (P = 0.023) and for body mass index from 27.68 (±7.04) to 26.74 (±7.15) kg/m2 (P = 0.008). Diastolic blood pressure increased from 69.75 (±11.41) to 75.74 (±8.42) mm Hg (P = 0.028) and stayed in a healthy range on average. Fasting-related side effects were all temporary, and slightly more prevalent in those with type 1 diabetes compared with the reference group. CONCLUSIONS This study demonstrated the feasibility, benefits, and safety aspects of a 7-d fast in adults with T1D.
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Affiliation(s)
- Bettina Berger
- Medical Theory, Integrative and Anthroposophic Medicine, Faculty of Health, Witten/Herdecke University, Herdecke, Germany.
| | - Ekkehart Jenetzky
- Medical Theory, Integrative and Anthroposophic Medicine, Faculty of Health, Witten/Herdecke University, Herdecke, Germany; Department of Child and Adolescent Psychiatry and Psychotherapy, University Medical Center, Johannes Gutenberg University, Mainz, Germany
| | - Diana Köblös
- Medical Theory, Integrative and Anthroposophic Medicine, Faculty of Health, Witten/Herdecke University, Herdecke, Germany
| | - Rainer Stange
- Institute for Social Medicine, Epidemiology and Health Economics, Charité University Medical Center, Berlin, Germany
| | - Andrea Baumann
- Medical Theory, Integrative and Anthroposophic Medicine, Faculty of Health, Witten/Herdecke University, Herdecke, Germany
| | | | - Andreas Michalsen
- Institute for Social Medicine, Epidemiology and Health Economics, Charité University Medical Center, Berlin, Germany
| | | | - David D Martin
- Medical Theory, Integrative and Anthroposophic Medicine, Faculty of Health, Witten/Herdecke University, Herdecke, Germany
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26
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Lohan SB, Ivanov D, Schüler N, Berger B, Zastrow L, Lademann J, Meinke MC. Switching from healthy to unhealthy oxidative stress - does the radical type can be used as an indicator? Free Radic Biol Med 2021; 162:401-411. [PMID: 33137467 DOI: 10.1016/j.freeradbiomed.2020.10.319] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 10/08/2020] [Accepted: 10/26/2020] [Indexed: 10/23/2022]
Abstract
Ultraviolet (UV) radiation leads to the formation of free radicals, which may cause immunological modulations, skin aging or skin cancer. Sunlight exposure in the UVA region according to CIE 85 promotes almost 46% of radical formation in skin. A critical radical concentration characterized by the inversion of the domination of primary ROS (reactive oxygen species) to an excess of secondary LOS (lipid oxygen species) is proven for the spectral regions UV and or VIS light and is intended to be a marker for an imbalance in the redox system, which can no longer compensate harmful effects. To investigate whether this transition point is also universally valid for one spectral region, the radical formation during and after targeted UVA in situ-irradiation at 365 ± 5 nm and three different irradiances (31, 94 and 244 mW/cm2) was investigated in ex vivo porcine skin using x-band electron paramagnetic resonance (EPR) spectroscopy. The quantification was performed with the spin probe 3-(carboxy)-2,2,5,5-tetramethylpyrrolidin-1-oxyl (PCA), the spin trap 5,5-Dimethyl-1-Pyrroline-N-Oxide (DMPO) was used to characterize the radical species. Furthermore, the viability of the skin cells after irradiation was controlled by an MTT [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide] assay, skin integrity was examined by histological analysis. A significant dose dependence in the radical formation is given at higher irradiance. The transition point was detected in the range of 0.5 MED after irradiation with the highest irradiance. From this point on the proportion of LOS increases with increasing dose and the proportion of ROS decreases. After switching off the UVA irradiation no further quantitative changes were detected, but rapid changes in the radical pattern were observed demonstrating the importance of in situ irradiation during the use of spin traps. Heat-pre-stressed skin showed more LOS than ROS already at the beginning of the irradiation, leading to the assumption that the transition point to the distress-level has already been reached. In summary, a postulated transition point could be verified for the UVA spectral region using only one spin trap combined with in-situ irradiation. A certain degree of stress is necessary to detect an inversion of the ratio of ROS to LOS. This reversal indicates an imbalance in the redox status. However, at low intensities no changes at all in radical pattern appeared over time (dose), probably it can be compensated by adaptation processes of the skin.
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Affiliation(s)
- S B Lohan
- Charité - Universitätsmedizin Berlin, corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Department of Dermatology, Venerology and Allergology, Center of Experimental and Applied Cutaneous Physiology, Berlin, Germany.
| | - D Ivanov
- Charité - Universitätsmedizin Berlin, corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Department of Dermatology, Venerology and Allergology, Center of Experimental and Applied Cutaneous Physiology, Berlin, Germany
| | - N Schüler
- Freiberg Instruments GmbH, Freiberg, Germany
| | - B Berger
- Freiberg Instruments GmbH, Freiberg, Germany
| | - L Zastrow
- Charité - Universitätsmedizin Berlin, corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Department of Dermatology, Venerology and Allergology, Center of Experimental and Applied Cutaneous Physiology, Berlin, Germany
| | - J Lademann
- Charité - Universitätsmedizin Berlin, corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Department of Dermatology, Venerology and Allergology, Center of Experimental and Applied Cutaneous Physiology, Berlin, Germany
| | - M C Meinke
- Charité - Universitätsmedizin Berlin, corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Department of Dermatology, Venerology and Allergology, Center of Experimental and Applied Cutaneous Physiology, Berlin, Germany
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27
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Asif MA, Garcia M, Tilbrook J, Brien C, Dowling K, Berger B, Schilling RK, Short L, Trittermann C, Gilliham M, Fleury D, Roy SJ, Pearson AS. Identification of salt tolerance QTL in a wheat RIL mapping population using destructive and non-destructive phenotyping. Funct Plant Biol 2021; 48:131-140. [PMID: 32835651 DOI: 10.1071/fp20167] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 07/31/2020] [Indexed: 06/11/2023]
Abstract
Bread wheat (Triticum aestivum L.) is one of the most important food crops, however it is only moderately tolerant to salinity stress. To improve wheat yield under saline conditions, breeding for improved salinity tolerance of wheat is needed. We have identified nine quantitative trail loci (QTL) for different salt tolerance sub-traits in a recombinant inbred line (RIL) population, derived from the bi-parental cross of Excalibur × Kukri. This population was screened for salinity tolerance subtraits using a combination of both destructive and non-destructive phenotyping. Genotyping by sequencing (GBS) was used to construct a high-density genetic linkage map, consisting of 3236 markers, and utilised for mapping QTL. Of the nine mapped QTL, six were detected under salt stress, including QTL for maintenance of shoot growth under salinity (QG(1-5).asl-5A, QG(1-5).asl-7B) sodium accumulation (QNa.asl-2A), chloride accumulation (QCl.asl-2A, QCl.asl-3A) and potassium:sodium ratio (QK:Na.asl-2DS2). Potential candidate genes within these QTL intervals were shortlisted using bioinformatics tools. These findings are expected to facilitate the breeding of new salt tolerant wheat cultivars.
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Affiliation(s)
- Muhammad A Asif
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Melissa Garcia
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Industrial Transformation Research Hub for Wheat in a Hot and Dry Climate, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia
| | - Joanne Tilbrook
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Chris Brien
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, SA 5064, Australia; and School of Information Technology and Mathematical Sciences, The University of South Australia, GPO Box 2471, Adelaide, SA 5001, Australia
| | - Kate Dowling
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, SA 5064, Australia
| | - Bettina Berger
- School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, SA 5064, Australia
| | - Rhiannon K Schilling
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Laura Short
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Christine Trittermann
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Matthew Gilliham
- School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Centre of Excellence in Plant Energy Biology, Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Delphine Fleury
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Industrial Transformation Research Hub for Wheat in a Hot and Dry Climate, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia; and Innolea, 6 chemin de Panedautes, 31700, Mondonville, France
| | - Stuart J Roy
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Industrial Transformation Research Hub for Wheat in a Hot and Dry Climate, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia; and Corresponding author.
| | - Allison S Pearson
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Centre of Excellence in Plant Energy Biology, Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
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28
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Kröz M, Reif M, Glinz A, Berger B, Nikolaou A, Zerm R, Brinkhaus B, Girke M, Büssing A, Gutenbrunner C. Correction to: Impact of a combined multimodal-aerobic and multimodal intervention compared to standard aerobic treatment in breast cancer survivors with chronic cancer-related fatigue - results of a three-armed pragmatic trial in a comprehensive cohort design. BMC Cancer 2020; 20:1174. [PMID: 33261571 PMCID: PMC7708222 DOI: 10.1186/s12885-020-07679-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
An amendment to this paper has been published and can be accessed via the original article.
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Affiliation(s)
- Matthias Kröz
- Department of Internal Medicine, Havelhöhe Hospital, Kladower Damm 221, D-14089, Berlin, Germany. .,Research Institute Havelhöhe, Kladower Damm 221, D-14089, Berlin, Germany. .,Institute for Social Medicine, Epidemiology and Health Economics, Charité Universitätsmedizin Berlin, Charité CCM, 10098, Berlin, Berlin, Germany. .,nstitute for Integrative Medicine, University of Witten/Herdecke, Gerhard-Kienle-Weg, 58313, Herdecke, Germany.
| | - Marcus Reif
- Society for Clinical Research, Hardenbergstraße 20, 10623, Berlin, Germany
| | - Augustina Glinz
- Research Institute Havelhöhe, Kladower Damm 221, D-14089, Berlin, Germany
| | - Bettina Berger
- nstitute for Integrative Medicine, University of Witten/Herdecke, Gerhard-Kienle-Weg, 58313, Herdecke, Germany
| | - Andreas Nikolaou
- Clinic for Rehabilitative Medicine, Hannover Medical School, Carl-Neuberg-Straße 1, 30625, Hannover, Germany
| | - Roland Zerm
- Department of Internal Medicine, Havelhöhe Hospital, Kladower Damm 221, D-14089, Berlin, Germany.,Research Institute Havelhöhe, Kladower Damm 221, D-14089, Berlin, Germany
| | - Benno Brinkhaus
- Institute for Social Medicine, Epidemiology and Health Economics, Charité Universitätsmedizin Berlin, Charité CCM, 10098, Berlin, Berlin, Germany
| | - Matthias Girke
- Department of Internal Medicine, Havelhöhe Hospital, Kladower Damm 221, D-14089, Berlin, Germany.,Research Institute Havelhöhe, Kladower Damm 221, D-14089, Berlin, Germany
| | - Arndt Büssing
- nstitute for Integrative Medicine, University of Witten/Herdecke, Gerhard-Kienle-Weg, 58313, Herdecke, Germany
| | - Christoph Gutenbrunner
- Clinic for Rehabilitative Medicine, Hannover Medical School, Carl-Neuberg-Straße 1, 30625, Hannover, Germany
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29
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Ball KR, Power SA, Brien C, Woodin S, Jewell N, Berger B, Pendall E. High-throughput, image-based phenotyping reveals nutrient-dependent growth facilitation in a grass-legume mixture. PLoS One 2020; 15:e0239673. [PMID: 33027289 PMCID: PMC7540849 DOI: 10.1371/journal.pone.0239673] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Accepted: 09/10/2020] [Indexed: 11/18/2022] Open
Abstract
This study used high throughput, image-based phenotyping (HTP) to distinguish growth patterns, detect facilitation and interpret variations to nutrient uptake in a model mixed-pasture system in response to factorial low and high nitrogen (N) and phosphorus (P) application. HTP has not previously been used to examine pasture species in mixture. We used red-green-blue (RGB) imaging to obtain smoothed projected shoot area (sPSA) to predict absolute growth (AG) up to 70 days after planting (sPSA, DAP 70), to identify variation in relative growth rates (RGR, DAP 35-70) and detect overyielding (an increase in yield in mixture compared with monoculture, indicating facilitation) in a grass-legume model pasture. Finally, using principal components analysis we interpreted between species changes to HTP-derived temporal growth dynamics and nutrient uptake in mixtures and monocultures. Overyielding was detected in all treatments and was driven by both grass and legume. Our data supported expectations of more rapid grass growth and augmented nutrient uptake in the presence of a legume. Legumes grew more slowly in mixture and where growth became more reliant on soil P. Relative growth rate in grass was strongly associated with shoot N concentration, whereas legume RGR was not strongly associated with shoot nutrients. High throughput, image-based phenotyping was a useful tool to quantify growth trait variation between contrasting species and to this end is highly useful in understanding nutrient-yield relationships in mixed pasture cultivations.
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Affiliation(s)
- Kirsten Rae Ball
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, New South Wales, Australia
- Institute of Biological & Environmental Sciences, University of Aberdeen, Aberdeen, United Kingdom
| | - Sally Anne Power
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, New South Wales, Australia
| | - Chris Brien
- Australian Plant Phenomics Facility, The Plant Accelerator, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae, South Australia, Australia
| | - Sarah Woodin
- Institute of Biological & Environmental Sciences, University of Aberdeen, Aberdeen, United Kingdom
| | - Nathaniel Jewell
- Australian Plant Phenomics Facility, The Plant Accelerator, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae, South Australia, Australia
| | - Bettina Berger
- Australian Plant Phenomics Facility, The Plant Accelerator, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae, South Australia, Australia
| | - Elise Pendall
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, New South Wales, Australia
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30
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Borjigin C, Schilling RK, Bose J, Hrmova M, Qiu J, Wege S, Situmorang A, Byrt C, Brien C, Berger B, Gilliham M, Pearson AS, Roy SJ. A single nucleotide substitution in TaHKT1;5-D controls shoot Na + accumulation in bread wheat. Plant Cell Environ 2020; 43:2158-2171. [PMID: 32652543 PMCID: PMC7540593 DOI: 10.1111/pce.13841] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2020] [Revised: 05/20/2020] [Accepted: 05/24/2020] [Indexed: 05/22/2023]
Abstract
Improving salinity tolerance in the most widely cultivated cereal, bread wheat (Triticum aestivum L.), is essential to increase grain yields on saline agricultural lands. A Portuguese landrace, Mocho de Espiga Branca accumulates up to sixfold greater leaf and sheath sodium (Na+ ) than two Australian cultivars, Gladius and Scout, under salt stress in hydroponics. Despite high leaf and sheath Na+ concentrations, Mocho de Espiga Branca maintained similar salinity tolerance compared to Gladius and Scout. A naturally occurring single nucleotide substitution was identified in the gene encoding a major Na+ transporter TaHKT1;5-D in Mocho de Espiga Branca, which resulted in a L190P amino acid residue variation. This variant prevents Mocho de Espiga Branca from retrieving Na+ from the root xylem leading to a high shoot Na+ concentration. The identification of the tissue-tolerant Mocho de Espiga Branca will accelerate the development of more elite salt-tolerant bread wheat cultivars.
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Affiliation(s)
- Chana Borjigin
- Australian Centre for Plant Functional Genomics, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
| | - Rhiannon K. Schilling
- Australian Centre for Plant Functional Genomics, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
| | - Jayakumar Bose
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- ARC Centre of Excellence in Plant Energy BiologyThe University of AdelaideGlen OsmondSouth AustraliaAustralia
| | - Maria Hrmova
- Australian Centre for Plant Functional Genomics, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- School of Life Sciences, Huaiyin Normal UniversityHuai'anChina
| | - Jiaen Qiu
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- ARC Centre of Excellence in Plant Energy BiologyThe University of AdelaideGlen OsmondSouth AustraliaAustralia
| | - Stefanie Wege
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- ARC Centre of Excellence in Plant Energy BiologyThe University of AdelaideGlen OsmondSouth AustraliaAustralia
| | - Apriadi Situmorang
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
| | - Caitlin Byrt
- Division of Plant SciencesResearch School of Biology, Australian National UniversityActonAustralian Capital TerritoryAustralia
| | - Chris Brien
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- Australian Plant Phenomics FacilityThe Plant Accelerator, The University of AdelaideGlen OsmondSouth AustraliaAustralia
| | - Bettina Berger
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- Australian Plant Phenomics FacilityThe Plant Accelerator, The University of AdelaideGlen OsmondSouth AustraliaAustralia
| | - Matthew Gilliham
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- ARC Centre of Excellence in Plant Energy BiologyThe University of AdelaideGlen OsmondSouth AustraliaAustralia
| | - Allison S. Pearson
- Australian Centre for Plant Functional Genomics, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- ARC Centre of Excellence in Plant Energy BiologyThe University of AdelaideGlen OsmondSouth AustraliaAustralia
| | - Stuart J. Roy
- Australian Centre for Plant Functional Genomics, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- School of Agriculture, Food and Wine, The University of AdelaideGlen OsmondSouth AustraliaAustralia
- ARC Industrial Transformation Research Hub for Wheat in a Hot Dry Climate, The University of AdelaideGlen OsmondSouth AustraliaAustralia
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Borjigin C, Schilling RK, Bose J, Hrmova M, Qiu J, Wege S, Situmorang A, Byrt C, Brien C, Berger B, Gilliham M, Pearson AS, Roy SJ. A single nucleotide substitution in TaHKT1;5-D controls shoot Na + accumulation in bread wheat. Plant Cell Environ 2020; 43:2158-2171. [PMID: 32652543 DOI: 10.1101/2020.01.21.909887] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2020] [Revised: 05/20/2020] [Accepted: 05/24/2020] [Indexed: 05/28/2023]
Abstract
Improving salinity tolerance in the most widely cultivated cereal, bread wheat (Triticum aestivum L.), is essential to increase grain yields on saline agricultural lands. A Portuguese landrace, Mocho de Espiga Branca accumulates up to sixfold greater leaf and sheath sodium (Na+ ) than two Australian cultivars, Gladius and Scout, under salt stress in hydroponics. Despite high leaf and sheath Na+ concentrations, Mocho de Espiga Branca maintained similar salinity tolerance compared to Gladius and Scout. A naturally occurring single nucleotide substitution was identified in the gene encoding a major Na+ transporter TaHKT1;5-D in Mocho de Espiga Branca, which resulted in a L190P amino acid residue variation. This variant prevents Mocho de Espiga Branca from retrieving Na+ from the root xylem leading to a high shoot Na+ concentration. The identification of the tissue-tolerant Mocho de Espiga Branca will accelerate the development of more elite salt-tolerant bread wheat cultivars.
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Affiliation(s)
- Chana Borjigin
- Australian Centre for Plant Functional Genomics, The University of Adelaide, Glen Osmond, South Australia, Australia
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Rhiannon K Schilling
- Australian Centre for Plant Functional Genomics, The University of Adelaide, Glen Osmond, South Australia, Australia
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Jayakumar Bose
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
- ARC Centre of Excellence in Plant Energy Biology, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Maria Hrmova
- Australian Centre for Plant Functional Genomics, The University of Adelaide, Glen Osmond, South Australia, Australia
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
- School of Life Sciences, Huaiyin Normal University, Huai'an, China
| | - Jiaen Qiu
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
- ARC Centre of Excellence in Plant Energy Biology, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Stefanie Wege
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
- ARC Centre of Excellence in Plant Energy Biology, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Apriadi Situmorang
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Caitlin Byrt
- Division of Plant Sciences, Research School of Biology, Australian National University, Acton, Australian Capital Territory, Australia
| | - Chris Brien
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Bettina Berger
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Matthew Gilliham
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
- ARC Centre of Excellence in Plant Energy Biology, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Allison S Pearson
- Australian Centre for Plant Functional Genomics, The University of Adelaide, Glen Osmond, South Australia, Australia
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
- ARC Centre of Excellence in Plant Energy Biology, The University of Adelaide, Glen Osmond, South Australia, Australia
| | - Stuart J Roy
- Australian Centre for Plant Functional Genomics, The University of Adelaide, Glen Osmond, South Australia, Australia
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, South Australia, Australia
- ARC Industrial Transformation Research Hub for Wheat in a Hot Dry Climate, The University of Adelaide, Glen Osmond, South Australia, Australia
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Liu H, Bruning B, Garnett T, Berger B. The Performances of Hyperspectral Sensors for Proximal Sensing of Nitrogen Levels in Wheat. Sensors (Basel) 2020; 20:s20164550. [PMID: 32823800 PMCID: PMC7472111 DOI: 10.3390/s20164550] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 08/11/2020] [Accepted: 08/11/2020] [Indexed: 11/16/2022]
Abstract
The accurate and high throughput quantification of nitrogen (N) content in wheat using non-destructive methods is an important step towards identifying wheat lines with high nitrogen use efficiency and informing agronomic management practices. Among various plant phenotyping methods, hyperspectral sensing has shown promise in providing accurate measurements in a fast and non-destructive manner. Past applications have utilised non-imaging instruments, such as spectrometers, while more recent approaches have expanded to hyperspectral cameras operating in different wavelength ranges and at various spectral resolutions. However, despite the success of previous hyperspectral applications, some important research questions regarding hyperspectral sensors with different wavelength centres and bandwidths remain unanswered, limiting wide application of this technology. This study evaluated the capability of hyperspectral imaging and non-imaging sensors to estimate N content in wheat leaves by comparing three hyperspectral cameras and a non-imaging spectrometer. This study answered the following questions: (1) How do hyperspectral sensors with different system setups perform when conducting proximal sensing of N in wheat leaves and what aspects have to be considered for optimal results? (2) What types of photonic detectors are most sensitive to N in wheat leaves? (3) How do the spectral resolutions of different instruments affect N measurement in wheat leaves? (4) What are the key-wavelengths with the highest correlation to N in wheat? Our study demonstrated that hyperspectral imaging systems with satisfactory system setups can be used to conduct proximal sensing of N content in wheat with sufficient accuracy. The proposed approach could reduce the need for chemical analysis of leaf tissue and lead to high-throughput estimation of N in wheat. The methodologies here could also be validated on other plants with different characteristics. The results can provide a reference for users wishing to measure N content at either plant- or leaf-scales using hyperspectral sensors.
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Hartmann P, Wang L, Nösges K, Berger B, Wilczek S, Brinkmann RP, Mussenbrock T, Juhasz Z, Donkó Z, Derzsi A, Lee E, Schulze J. Charged particle dynamics and distribution functions in low pressure dual-frequency capacitively coupled plasmas operated at low frequencies and high voltages. ACTA ACUST UNITED AC 2020. [DOI: 10.1088/1361-6595/ab9374] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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Saade S, Brien C, Pailles Y, Berger B, Shahid M, Russell J, Waugh R, Negrão S, Tester M. Dissecting new genetic components of salinity tolerance in two-row spring barley at the vegetative and reproductive stages. PLoS One 2020; 15:e0236037. [PMID: 32701981 PMCID: PMC7377408 DOI: 10.1371/journal.pone.0236037] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2020] [Accepted: 06/27/2020] [Indexed: 11/18/2022] Open
Abstract
Soil salinity imposes an agricultural and economic burden that may be alleviated by identifying the components of salinity tolerance in barley, a major crop and the most salt tolerant cereal. To improve our understanding of these components, we evaluated a diversity panel of 377 two-row spring barley cultivars during both the vegetative, in a controlled environment, and the reproductive stages, in the field. In the controlled environment, a high-throughput phenotyping platform was used to assess the growth-related traits under both control and saline conditions. In the field, the agronomic traits were measured from plots irrigated with either fresh or saline water. Association mapping for the different components of salinity tolerance enabled us to detect previously known associations, such as HvHKT1;5. Using an "interaction model", which took into account the interaction between treatment (control and salt) and genetic markers, we identified several loci associated with yield components related to salinity tolerance. We also observed that the two developmental stages did not share genetic regions associated with the components of salinity tolerance, suggesting that different mechanisms play distinct roles throughout the barley life cycle. Our association analysis revealed that genetically defined regions containing known flowering genes (Vrn-H3, Vrn-H1, and HvNAM-1) were responsive to salt stress. We identified a salt-responsive locus (7H, 128.35 cM) that was associated with grain number per ear, and suggest a gene encoding a vacuolar H+-translocating pyrophosphatase, HVP1, as a candidate. We also found a new QTL on chromosome 3H (139.22 cM), which was significant for ear number per plant, and a locus on chromosome 2H (141.87 cM), previously identified using a nested association mapping population, which associated with a yield component and interacted with salinity stress. Our study is the first to evaluate a barley diversity panel for salinity stress under both controlled and field conditions, allowing us to identify contributions from new components of salinity tolerance which could be used for marker-assisted selection when breeding for marginal and saline regions.
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Affiliation(s)
- Stephanie Saade
- Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Chris Brien
- School of Agriculture, Food and Wine, Waite Research Precinct, University of Adelaide, Urrbrae, South Australia, Australia
- School of Information Technology and Mathematical Sciences, University of South Australia, Adelaide, South Australia, Australia
- The Plant Accelerator, Australian Plant Phenomics Facility, Waite Research Precinct, University of Adelaide, Urrbrae, South Australia, Australia
| | - Yveline Pailles
- Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Bettina Berger
- School of Agriculture, Food and Wine, Waite Research Precinct, University of Adelaide, Urrbrae, South Australia, Australia
- The Plant Accelerator, Australian Plant Phenomics Facility, Waite Research Precinct, University of Adelaide, Urrbrae, South Australia, Australia
| | - Mohammad Shahid
- International Center for Biosaline Agriculture (ICBA), Dubai, United Arab Emirates
| | - Joanne Russell
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland
| | - Robbie Waugh
- School of Agriculture, Food and Wine, Waite Research Precinct, University of Adelaide, Urrbrae, South Australia, Australia
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland
- Division of Plant Sciences, School of Life Sciences, University of Dundee at The James Hutton Institute, Invergowrie, Dundee, Scotland
| | - Sónia Negrão
- School of Biology and Environmental Sciences, University College Dublin, Belfield, Dublin, Ireland
| | - Mark Tester
- Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
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Mehl A, Reif M, Zerm R, Pranga D, Friemel D, Berger B, Brinkhaus B, Gutenbrunner C, Büssing A, Kröz M. Impact of a Multimodal and Combination Therapy on Self-Regulation and Internal Coherence in German Breast Cancer Survivors With Chronic Cancer-Related Fatigue: A Mixed-Method Comprehensive Cohort Design Study. Integr Cancer Ther 2020; 19:1534735420935618. [PMID: 32618207 PMCID: PMC7491213 DOI: 10.1177/1534735420935618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Background: Recent studies have proved the relevance of salutogenetic variables for fatigue management in breast cancer survivors with cancer-related fatigue (CRF). This comprehensive cohort design study is the first to examine the impact of 2 multimodal therapies, multimodal therapy (MT) and combined therapy (CT), compared with standard aerobic training (AT) on salutogenetic variables (self-regulation and internal coherence) and distress in breast cancer survivors with CRF. Methods: A total of 105 patients started the therapies and n = 84 completed the Self-regulation Scale, the Internal Coherence Scale, the Cancer Fatigue Scale, and the Hospital Anxiety and Depression Scale at baseline, 10 weeks after treatment (T1) and n = 81 after 6 months (T2). Patient satisfaction and qualitative feedback regarding therapy quality was assessed at T1. A general linear model including allocation type, therapy arm (MT/CT/AT), and bias-adjusting propensity scores tested the superiority of both multimodal therapies versus AT for all questionnaires at T1 and T2. Results: MT and CT were superior to AT to improve self-regulation and patients' satisfaction at T1. Additionally, CT showed superiority for self-regulation at T2 (all P < .05). Compared with AT, internal coherence was significantly higher for patients in the MT arms at T2, respectively (all P < .01). Pearson's correlations between self-regulation, internal coherence, and CRF improved from baseline to T2 (Mean r = -0.60). Qualitative feedback confirmed patients' benefits in several health-related categories. Conclusions: Self-regulation and internal coherence are manipulable variables with relevant CRF associations. They can be positively affected by multimodal therapies. Alongside patients' satisfaction and qualitative feedback they help refine treatment.
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Affiliation(s)
| | - Marcus Reif
- Society for Clinical Research, Berlin, Germany
| | - Roland Zerm
- Research Institute Havelhöhe, Berlin, Germany.,Havelhöhe Hospital, Berlin, Germany
| | | | | | | | | | | | | | - Matthias Kröz
- Research Institute Havelhöhe, Berlin, Germany.,Witten/Herdecke University, Witten, Germany
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Brien C, Jewell N, Watts-Williams SJ, Garnett T, Berger B. Smoothing and extraction of traits in the growth analysis of noninvasive phenotypic data. Plant Methods 2020; 16:36. [PMID: 32180825 PMCID: PMC7065360 DOI: 10.1186/s13007-020-00577-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Accepted: 02/27/2020] [Indexed: 05/14/2023]
Abstract
BACKGROUND Non-destructive high-throughput plant phenotyping is becoming increasingly used and various methods for growth analysis have been proposed. Traditional longitudinal or repeated measures analyses that model growth using statistical models are common. However, often the variation in the data is inappropriately modelled, in part because the required models are complicated and difficult to fit. We provide a novel, computationally efficient technique that is based on smoothing and extraction of traits (SET), which we compare with the alternative traditional longitudinal analysis methods. RESULTS The SET-based and longitudinal analyses were applied to a tomato experiment to investigate the effects on plant growth of zinc (Zn) addition and growing plants in soil inoculated with arbuscular mycorrhizal fungi (AMF). Conclusions from the SET-based and longitudinal analyses are similar, although the former analysis results in more significant differences. They showed that added Zn had little effect on plants grown in inoculated soils, but that growth depended on the amount of added Zn for plants grown in uninoculated soils. The longitudinal analysis of the unsmoothed data fitted a mixed model that involved both fixed and random regression modelling with splines, as well as allowing for unequal variances and autocorrelation between time points. CONCLUSIONS A SET-based analysis can be used in any situation in which a traditional longitudinal analysis might be applied, especially when there are many observed time points. Two reasons for deploying the SET-based method are (i) biologically relevant growth parameters are required that parsimoniously describe growth, usually focussing on a small number of intervals, and/or (ii) a computationally efficient method is required for which a valid analysis is easier to achieve, while still capturing the essential features of the exhibited growth dynamics. Also discussed are the statistical models that need to be considered for traditional longitudinal analyses and it is demonstrated that the oft-omitted unequal variances and autocorrelation may be required for a valid longitudinal analysis. With respect to the separate issue of the subjective choice of mathematical growth functions or splines to characterize growth, it is recommended that, for both SET-based and longitudinal analyses, an evidence-based procedure is adopted.
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Affiliation(s)
- Chris Brien
- The Plant Accelerator, Australian Plant Phenomics Facility, The University of Adelaide, PMB 1, Glen Osmond, SA 5064 Australia
- School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064 Australia
- School of Information Technology and Information Sciences, University of South Australia, GPO Box 2471, Adelaide, SA 5001 Australia
| | - Nathaniel Jewell
- The Plant Accelerator, Australian Plant Phenomics Facility, The University of Adelaide, PMB 1, Glen Osmond, SA 5064 Australia
- School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064 Australia
| | | | - Trevor Garnett
- The Plant Accelerator, Australian Plant Phenomics Facility, The University of Adelaide, PMB 1, Glen Osmond, SA 5064 Australia
- School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064 Australia
| | - Bettina Berger
- The Plant Accelerator, Australian Plant Phenomics Facility, The University of Adelaide, PMB 1, Glen Osmond, SA 5064 Australia
- School of Agriculture, Food and Wine, The University of Adelaide, PMB 1, Glen Osmond, SA 5064 Australia
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Sethe D, Büssing A, Hilgard D, Berger B. [Validation of the German Version of Pediatric Self-Efficacy for Diabetes-Type-1 Scale]. Psychother Psychosom Med Psychol 2020; 70:349-357. [PMID: 32069510 DOI: 10.1055/a-1088-1316] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
INTRODUCTION Since there is no suitable tool for measuring the specific, diabetes-related self-efficacy in children with type-1-diabetes in German language, this paper presents the construction and validation of Pediatric Self-Efficacy for Diabetes-Type-1 Scale (PSEDT-1). The intention was to develop a guideline-compliant, pediatric, revised self-efficacy scale on the basis of Grossman, Brink and Hauser̓s SED. DESIGN Children with type 1 diabetes (N=221) were included in a clinical, multi-centre validation study. To assess sensitivity to change, 85 of these children were asked to complete the PSEDT-1 before, immediately after, and 6 months after inpatient diabetes training. PSEDT-1 has been associated with scales that measure constructs that are similar and different in terms of content. The interpretation of the correlation results should provide information on validity. The PSEDT-1 was thus reviewed using the German Multidimensional Self-Assessment Scale (MSWS), the German questionnaire on health and illness-related control beliefs (KKG). RESULTS The reliability results showed a good internal consistency with Cronbach's α=0,87; the discriminatory power of the items was acceptable. Exploratory factor analysis identified 4 factors that account for 54% of the variance: 1) diabetes self-management skill, 2) (medical) insulin management competence, 3) (general) self-assertiveness, 4) autonomous self-regulation. The construct validity of PSEDT-1 has been evaluated by estimating its association with other variables. It was possible to verify the theoretically expected correlation patterns. In addition, the study results showed indications of sufficiently high sensitivity to change. DISCUSSION The results suggest that PSEDT-1 is a valid and reliable tool that, in addition to the scale values of the competence areas of diabetes self-management, medical management, and general self-assertion, also determines the scale value of autonomous self-regulation to assess diabetes-related self-efficacy.
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Affiliation(s)
- Dominik Sethe
- Department für Humanmedizin, Universität Witten/Herdecke Fakultät für Gesundheit, Witten
| | - Arndt Büssing
- Department für Humanmedizin, Universität Witten/Herdecke Fakultät für Gesundheit, Witten
| | | | - Bettina Berger
- Department für Humanmedizin, Universität Witten/Herdecke Fakultät für Gesundheit, Witten
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Beerenbrock Y, Meyer L, Böhme J, Herrlich S, Mews S, Berger B, Martin D, Büssing A. Perceived effects of Tango Argentino on body experience in persons with Parkinson's disease (PD)-A qualitative study with affected persons and their partners. Complement Ther Med 2020; 48:102221. [PMID: 31987239 DOI: 10.1016/j.ctim.2019.102221] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Revised: 10/15/2019] [Accepted: 10/16/2019] [Indexed: 10/25/2022] Open
Abstract
BACKGROUND Persons with Parkinson's disease (PD) experience somatic and psycho-emotional limitations. As a neurodegenerative disease with increasing motor symptoms, PD changes the body experience. Embodied activities like dancing are beneficial to individuals with PD regarding mobility, balance and body feeling. The objective of this study was to assess the impact of Tango Argentino (TA) on body experience in individuals with PD. METHODS This qualitative study was conducted among 12 individuals with PD and their dance partners participating in TA courses for persons with PD and uses semi-standardized interviews. The heterogeneity of the sample was mainly based on the number of TA classes, so that participants were distinguished in participants with 10 h (beginners) and participants with more than 10 h (advanced). Further variance was due to different age groups and duration of disease. RESULTS Participants reported change on five categories of body experiences: body awareness, motor symptoms and movement, general feelings, body sensations and disease-related feelings. Participants cited a shift in body awareness and improved stability, walking safety, enhanced mobility and amelioration in gestures and facial expressions. In general, participants described reduced body fatigue, anxiety, shame and frustration and increase in joy, pride, curiosity as well as reinforcement of partnership. With regard to perception, positive and negative feelings, ease, relaxation and increase of inner congruence were reported. The experience of normality and health helped to generate greater acceptance of disease burdens and to develop self-confidence and self-assurance. Dance partners confirmed the perceptions of the dancers with PD. CONCLUSION The perceived effects of TA courses may be linked to a positive body awareness and body control which may be related improved motor symptoms, social and everyday life. These perceived effects should be controlled in relation to the long time change in embodied activity and body experience in persons with PD.
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Affiliation(s)
- Yvonne Beerenbrock
- Professorship Quality of Life, Spirituality and Coping, Faculty of Health, Witten/Herdecke University, Germany.
| | - Lea Meyer
- Department of Psychology and Psychotherapy, Faculty of Health, Witten/Herdecke University, Germany.
| | - Juliane Böhme
- Department of Psychology and Psychotherapy, Faculty of Health, Witten/Herdecke University, Germany
| | - Stephanie Herrlich
- Department of Psychology and Psychotherapy, Faculty of Health, Witten/Herdecke University, Germany
| | - Sunnyi Mews
- Department of Psychology and Psychotherapy, Faculty of Health, Witten/Herdecke University, Germany
| | - Bettina Berger
- Chair of Medical Theory, Integrative and Anthroposophical Medicine, Gerhard-Kienle-Weg 4, Herdecke, 58313, NRW, Germany
| | - David Martin
- Chair of Medical Theory, Integrative and Anthroposophical Medicine, Gerhard-Kienle-Weg 4, Herdecke, 58313, NRW, Germany
| | - Arndt Büssing
- Professorship Quality of Life, Spirituality and Coping, Faculty of Health, Witten/Herdecke University, Germany.
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Konate M, Wilkinson MJ, Taylor J, Scott ES, Berger B, Rodriguez Lopez CM. Greenhouse Spatial Effects Detected in the Barley ( Hordeum vulgare L.) Epigenome Underlie Stochasticity of DNA Methylation. Front Plant Sci 2020; 11:553907. [PMID: 33013971 PMCID: PMC7511590 DOI: 10.3389/fpls.2020.553907] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Accepted: 08/24/2020] [Indexed: 05/10/2023]
Abstract
Environmental cues are known to alter the methylation profile of genomic DNA, and thereby change the expression of some genes. A proportion of such modifications may become adaptive by adjusting expression of stress response genes but others have been shown to be highly stochastic, even under controlled conditions. The influence of environmental flux on plants adds an additional layer of complexity that has potential to confound attempts to interpret interactions between environment, methylome, and plant form. We therefore adopt a positional and longitudinal approach to study progressive changes to barley DNA methylation patterns in response to salt exposure during development under greenhouse conditions. Methylation-sensitive amplified polymorphism (MSAP) and phenotypic analyses of nine diverse barley varieties were grown in a randomized plot design, under two salt treatments (0 and 75 mM NaCl). Combining environmental, phenotypic and epigenetic data analyses, we show that at least part of the epigenetic variability, previously described as stochastic, is linked to environmental micro-variations during plant growth. Additionally, we show that differences in methylation increase with time of exposure to micro-variations in environment. We propose that subsequent epigenetic studies take into account microclimate-induced epigenetic variability.
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Affiliation(s)
- Moumouni Konate
- Institut de l'Environnement et de Recherche Agricole (INERA), DRREA-Ouest, Bobo Dioulasso, Burkina Faso
| | - Michael J. Wilkinson
- Institute of Biological, Environmental and Rural Sciences, Penglais Campus, Aberystwyth, United Kingdom
- *Correspondence: Carlos Marcelino Rodriguez Lopez, ; Michael J. Wilkinson,
| | - Julian Taylor
- Biometry Hub, School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, SA, Australia
| | - Eileen S. Scott
- School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, SA, Australia
| | - Bettina Berger
- School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, SA, Australia
- The Plant Accelerator, Australian Plant Phenomics Facility, School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, Glen Osmond, SA, Australia
| | - Carlos Marcelino Rodriguez Lopez
- Environmental Epigenetics and Genetics Group, Department of Horticulture, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, United States
- *Correspondence: Carlos Marcelino Rodriguez Lopez, ; Michael J. Wilkinson,
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Broad RC, Bonneau JP, Beasley JT, Roden S, Sadowski P, Jewell N, Brien C, Berger B, Tako E, Glahn RP, Hellens RP, Johnson AAT. Effect of Rice GDP-L-Galactose Phosphorylase Constitutive Overexpression on Ascorbate Concentration, Stress Tolerance, and Iron Bioavailability in Rice. Front Plant Sci 2020; 11:595439. [PMID: 33343598 PMCID: PMC7744345 DOI: 10.3389/fpls.2020.595439] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2020] [Accepted: 11/16/2020] [Indexed: 05/12/2023]
Abstract
Ascorbate (vitamin C) is an essential multifunctional molecule for both plants and mammals. In plants, ascorbate is the most abundant water-soluble antioxidant that supports stress tolerance. In humans, ascorbate is an essential micronutrient and promotes iron (Fe) absorption in the gut. Engineering crops with increased ascorbate levels have the potential to improve both crop stress tolerance and human health. Here, rice (Oryza sativa L.) plants were engineered to constitutively overexpress the rice GDP-L-galactose phosphorylase coding sequence (35S-OsGGP), which encodes the rate-limiting enzymatic step of the L-galactose pathway. Ascorbate concentrations were negligible in both null segregant (NS) and 35S-OsGGP brown rice (BR, unpolished grain), but significantly increased in 35S-OsGGP germinated brown rice (GBR) relative to NS. Foliar ascorbate concentrations were significantly increased in 35S-OsGGP plants in the vegetative growth phase relative to NS, but significantly reduced at the reproductive growth phase and were associated with reduced OsGGP transcript levels. The 35S-OsGGP plants did not display altered salt tolerance at the vegetative growth phase despite having elevated ascorbate concentrations. Ascorbate concentrations were positively correlated with ferritin concentrations in Caco-2 cells - an accurate predictor of Fe bioavailability in human digestion - exposed to in vitro digests of NS and 35S-OsGGP BR and GBR samples.
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Affiliation(s)
- Ronan C. Broad
- School of Biosciences, The University of Melbourne, Melbourne, VIC, Australia
- *Correspondence: Ronan C. Broad,
| | - Julien P. Bonneau
- School of Biosciences, The University of Melbourne, Melbourne, VIC, Australia
| | - Jesse T. Beasley
- School of Biosciences, The University of Melbourne, Melbourne, VIC, Australia
| | - Sally Roden
- Centre for Agriculture and the Bioeconomy, Institute for Future Environments, Queensland University of Technology, Brisbane, QLD, Australia
| | - Pawel Sadowski
- Central Analytical Research Facility, Institute for Future Environments, Queensland University of Technology, Brisbane, QLD, Australia
| | - Nathaniel Jewell
- Australian Plant Phenomics Facility and School for Agriculture, Food and Wine, The University of Adelaide, Adelaide, SA, Australia
| | - Chris Brien
- Australian Plant Phenomics Facility and School for Agriculture, Food and Wine, The University of Adelaide, Adelaide, SA, Australia
| | - Bettina Berger
- Australian Plant Phenomics Facility and School for Agriculture, Food and Wine, The University of Adelaide, Adelaide, SA, Australia
| | - Elad Tako
- Department of Food Science, Cornell University, Ithaca, NY, United States
| | - Raymond P. Glahn
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Ithaca, NY, United States
| | - Roger P. Hellens
- Centre for Agriculture and the Bioeconomy, Institute for Future Environments, Queensland University of Technology, Brisbane, QLD, Australia
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Bruning B, Liu H, Brien C, Berger B, Lewis M, Garnett T. The Development of Hyperspectral Distribution Maps to Predict the Content and Distribution of Nitrogen and Water in Wheat ( Triticum aestivum). Front Plant Sci 2019; 10:1380. [PMID: 31737009 PMCID: PMC6831646 DOI: 10.3389/fpls.2019.01380] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Accepted: 10/07/2019] [Indexed: 05/25/2023]
Abstract
Quantifying plant water content and nitrogen levels and determining water and nitrogen phenotypes is important for crop management and achieving optimal yield and quality. Hyperspectral methods have the potential to advance high throughput phenotyping efforts by providing a rapid, accurate, and nondestructive alternative for estimating biochemical and physiological plant traits. Our study (i) acquired hyperspectral images of wheat plants using a high throughput phenotyping system, (ii) developed regression models capable of predicting water and nitrogen levels of wheat plants, and (iii) applied the regression coefficients from the best-performing models to hyperspectral images in order to develop prediction maps to visualize nitrogen and water distribution within plants. Hyperspectral images were collected of four wheat (Triticum aestivum) genotypes grown in nine soil nutrient conditions and under two water treatments. Five multivariate regression methods in combination with 10 spectral preprocessing techniques were employed to find a model with strong predictive performance. Visible and near infrared wavelengths (VNIR: 400-1,000nm) alone were not sufficient to accurately predict water and nitrogen content (validation R2 = 0.56 and R2 = 0.59, respectively) but model accuracy was improved when shortwave-infrared wavelengths (SWIR: 1,000-2,500nm) were incorporated (validation R2 = 0.63 and R2 = 0.66, respectively). Wavelength reduction produced equivalent model accuracies while reducing model size and complexity (validation R2 = 0.69 and R2 = 0.66 for water and nitrogen, respectively). Developed distribution maps provided a visual representation of the concentration and distribution of water within plants while nitrogen maps seemed to suffer from noise. The findings and methods from this study demonstrate the high potential of high-throughput hyperspectral imagery for estimating and visualizing the distribution of plant chemical properties.
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Affiliation(s)
- Brooke Bruning
- Australian Plant Phenomics Facility, The Plant Accelerator, School of Agriculture, Food & Wine, University of Adelaide, Urrbrae, SA, Australia
| | - Huajian Liu
- Australian Plant Phenomics Facility, The Plant Accelerator, School of Agriculture, Food & Wine, University of Adelaide, Urrbrae, SA, Australia
| | - Chris Brien
- Australian Plant Phenomics Facility, The Plant Accelerator, School of Agriculture, Food & Wine, University of Adelaide, Urrbrae, SA, Australia
| | - Bettina Berger
- Australian Plant Phenomics Facility, The Plant Accelerator, School of Agriculture, Food & Wine, University of Adelaide, Urrbrae, SA, Australia
| | - Megan Lewis
- Ecology and Evolutionary Biology, School of Biological Sciences, University of Adelaide, Adelaide, SA, Australia
| | - Trevor Garnett
- Australian Plant Phenomics Facility, The Plant Accelerator, School of Agriculture, Food & Wine, University of Adelaide, Urrbrae, SA, Australia
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Berger B, Friedrichsen B, Kreye M, Gruber J, Fried A, Kuehn CR, Ephraim M, Menne E, Buessing M, Martin D. P2519Multiprofessional intervention for fostering self management capabilities for patients with chronic heart disease - development of a common curriculum (MIFeSCH). Eur Heart J 2019. [DOI: 10.1093/eurheartj/ehz748.0848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Background
Chronic cardiovascular disease (CAD) still is the leading cause of death in industrialized countries in spite of substantial progress in diagnostics and therapy. Programs of lifestyle management are effective but insufficiently established in usual patient care. The authors provide multi professional educational courses to strengthen self management capabilities for cardiovascular patients in five different institutions in Europe since up to 20 years in modification of the program of Dr. Dean Ornish. Physicians, psychologists, dietitians and artistic and movement therapists work together in courses lasting from half a year to one year.
To implement their programs in daily care, an association of these five institutions will evaluate a common lifestyle management program in four phases: 1. development of a common curriculum, 2. pilot study, 3. interventional study, 4. implementation study.
Phase 1 is now completed. The evaluation will show, whether this lifestyle management program leads to improvement of health in patients and in the therapeutic team.
Purpose of phase 1: development of a common curriculum by the five active members of the association.
Methods
The five existing educational programs were assessed and differences between the programs themselves and other existing programs of patient education were defined. Distinctive and common features of the different institutions were recorded. Structured interviews with members of all institutions acquired content, methods and eductional goals of the interventions according to predefined criteria for patient education programs in the respective countries. The results were discussed, reflected and a common curriculum was consented.
Results
The consented multi professional curriculum, comprising the activities of five active heart education programs defines five different levels of competence which are key of their patient education goals: (1) reflective self-awareness (I-competence), (2) artistic competence, (3) competence of ensouled movement, (4) nutritional competence and (5) social competence.
The main difference between the already existing programs for patients with CAD and the newly developed curriculum is the emphasis on training the participants' self awareness and social competence, for example by biography work in an interdisciplinary approach.
Levels of competence
Conclusion
The process of generating a common curriculum of competence levels, educational goals and necessary methods comprising the work of five different but associated institutions was successful. A pilot study will now be performed to show the effects of this program on cardiovascular health and quality of live of study participants and the therapeutic team as well to show, whether this intervention reduces the risk of burn out for the therapists.
By this the authors hope to implement their education program according to the curriculum as an improvement of standard therapy for patients with cardiovascular disease.
Acknowledgement/Funding
Universität Witten-Herdecke
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Affiliation(s)
- B Berger
- Forschungs- und Lehrzentrum Herdecke, Universität Witten - Herdecke, Lehrstuhl für Medizintheorie, integrative und Anthroposophische Medizin, Herdecke, Germany
| | | | - M Kreye
- Herzschule München, München, Germany
| | - J Gruber
- Gemeinschaftskrankenhaus Witten - Herdecke, Herdecker Herzschule, Herdecke, Germany
| | - A Fried
- Gemeinschaftskrankenhaus Havelhöhe, Herzschule Havelhöhe, Berlin, Germany
| | - C R Kuehn
- Herzschule Hamburg, Hamburg, Germany
| | - M Ephraim
- Therapeuticum Aurum, Hartschool, Zoetermeer, Netherlands (The)
| | - E Menne
- Forschungs- und Lehrzentrum Herdecke, Universität Witten - Herdecke, Lehrstuhl für Medizintheorie, integrative und Anthroposophische Medizin, Herdecke, Germany
| | - M Buessing
- Forschungs- und Lehrzentrum Herdecke, Universität Witten - Herdecke, Lehrstuhl für Medizintheorie, integrative und Anthroposophische Medizin, Herdecke, Germany
| | - D Martin
- Forschungs- und Lehrzentrum Herdecke, Universität Witten - Herdecke, Lehrstuhl für Medizintheorie, integrative und Anthroposophische Medizin, Herdecke, Germany
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Riley RC, Cavagnaro TR, Brien C, Smith FA, Smith SE, Berger B, Garnett T, Stonor R, Schilling RK, Chen ZH, Powell JR. Resource allocation to growth or luxury consumption drives mycorrhizal responses. Ecol Lett 2019; 22:1757-1766. [PMID: 31370098 DOI: 10.1111/ele.13353] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Revised: 04/28/2019] [Accepted: 07/01/2019] [Indexed: 12/24/2022]
Abstract
Highly variable phenotypic responses in mycorrhizal plants challenge our functional understanding of plant-fungal mutualisms. Using non-invasive high-throughput phenotyping, we observed that arbuscular mycorrhizal (AM) fungi relieved phosphorus (P) limitation and enhanced growth of Brachypodium distachyon under P-limited conditions, while photosynthetic limitation under low nitrogen (N) was exacerbated by the fungus. However, these responses were strongly dependent on host genotype: only the faster growing genotype (Bd3-1) utilised P transferred from the fungus to achieve improved growth under P-limited conditions. Under low N, the slower growing genotype (Bd21) had a carbon and N surplus that was linked to a less negative growth response compared with the faster growing genotype. These responses were linked to the regulation of N : P stoichiometry, couples resource allocation to growth or luxury consumption in diverse plant lineages. Our results attest strongly to a mechanism in plants by which plant genotype-specific resource economics drive phenotypic outcomes during AM symbioses.
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Affiliation(s)
- Rohan C Riley
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Austrailia
| | - Timothy R Cavagnaro
- The Waite Research Institute and School of Agriculture, Food and Wine, University of Adelaide, Adelaide, SA, Australia
| | - Chris Brien
- The Waite Research Institute and School of Agriculture, Food and Wine, University of Adelaide, Adelaide, SA, Australia.,Australian Plant Phenomics Facility, The Plant Accelerator, University of Adelaide, Adelaide, SA, Australia.,Phenomics and Bioinformatics Research Centre, University of South Australia, Adelaide, SA, Australia
| | - F Andrew Smith
- The Waite Research Institute and School of Agriculture, Food and Wine, University of Adelaide, Adelaide, SA, Australia
| | - Sally E Smith
- The Waite Research Institute and School of Agriculture, Food and Wine, University of Adelaide, Adelaide, SA, Australia
| | - Bettina Berger
- The Waite Research Institute and School of Agriculture, Food and Wine, University of Adelaide, Adelaide, SA, Australia.,Australian Plant Phenomics Facility, The Plant Accelerator, University of Adelaide, Adelaide, SA, Australia
| | - Trevor Garnett
- The Waite Research Institute and School of Agriculture, Food and Wine, University of Adelaide, Adelaide, SA, Australia.,Australian Plant Phenomics Facility, The Plant Accelerator, University of Adelaide, Adelaide, SA, Australia
| | - Rebecca Stonor
- The Waite Research Institute and School of Agriculture, Food and Wine, University of Adelaide, Adelaide, SA, Australia
| | - Rhiannon K Schilling
- The Waite Research Institute and School of Agriculture, Food and Wine, University of Adelaide, Adelaide, SA, Australia
| | - Zhong-Hua Chen
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Austrailia.,School of Science and Health, Western Sydney University, Penrith, NSW, Australia
| | - Jeff R Powell
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Austrailia
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Berger B, Stange R, Baumann A, Köblös D, Liebscher D, Bley M, Michalsen A, Martin D. Fasten für Menschen mit Typ-1-Diabetes
(FaMeD1). ACTA ACUST UNITED AC 2019. [DOI: 10.1055/a-0831-6231] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
ZusammenfassungTyp-1-Diabetes mellitus (T1DM) ist eine fortschreitende und herausfordernde
chronische Erkrankung, welche immer wieder neue emotionale Anpassungsleistungen
erfordert 1. Im folgenden Studienprotokoll
wird das geplante Vorgehen zur Überprüfung der Machbarkeit und Sicherheit einer
Buchinger-Fastenintervention bei Menschen mit Typ-1-Diabetes mellitus in
Hinblick auf diabetesbezogene Problembereiche und unerwünschte Ereignisse wie
Ketoazidosen und schwere Unterzuckerungen vorgestellt.
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Ward B, Brien C, Oakey H, Pearson A, Negrão S, Schilling RK, Taylor J, Jarvis D, Timmins A, Roy SJ, Tester M, Berger B, van den Hengel A. High-throughput 3D modelling to dissect the genetic control of leaf elongation in barley (Hordeum vulgare). Plant J 2019; 98:555-570. [PMID: 30604470 PMCID: PMC6850118 DOI: 10.1111/tpj.14225] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2018] [Revised: 12/17/2018] [Accepted: 12/19/2018] [Indexed: 05/11/2023]
Abstract
To optimize shoot growth and structure of cereals, we need to understand the genetic components controlling initiation and elongation. While measuring total shoot growth at high throughput using 2D imaging has progressed, recovering the 3D shoot structure of small grain cereals at a large scale is still challenging. Here, we present a method for measuring defined individual leaves of cereals, such as wheat and barley, using few images. Plant shoot modelling over time was used to measure the initiation and elongation of leaves in a bi-parental barley mapping population under low and high soil salinity. We detected quantitative trait loci (QTL) related to shoot growth per se, using both simple 2D total shoot measurements and our approach of measuring individual leaves. In addition, we detected QTL specific to leaf elongation and not to total shoot size. Of particular importance was the detection of a QTL on chromosome 3H specific to the early responses of leaf elongation to salt stress, a locus that could not be detected without the computer vision tools developed in this study.
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Affiliation(s)
- Ben Ward
- Australian Center for Visual TechnologiesUniversity of AdelaideAdelaideSA5005Australia
| | - Chris Brien
- Australian Plant Phenomics FacilityThe Plant AcceleratorSchool of Agriculture Food & WineUniversity of AdelaideUrrbraeSA5064Australia
- School of Agriculture Food & Wine and Waite Research InstituteUniversity of AdelaideUrrbraeSA5064Australia
- Phenomics and Bioinformatics Research CentreSchool of Information Technology and Mathematical SciencesUniversity of South AustraliaAdelaide5001Australia
| | - Helena Oakey
- School of Agriculture Food & Wine and Waite Research InstituteUniversity of AdelaideUrrbraeSA5064Australia
| | - Allison Pearson
- School of Agriculture Food & Wine and Waite Research InstituteUniversity of AdelaideUrrbraeSA5064Australia
- ARC Centre of Excellence in Plant Energy BiologyThe University of AdelaidePMB 1, Glen OsmondAdelaideSouth Australia5064Australia
- Australian Centre for Plant Functional GenomicsPMB 1, Glen OsmondAdelaideSouth Australia5064Australia
| | - Sónia Negrão
- Division of Biological and Environmental Sciences and Engineering (BESE)King Abdullah University of Science and Technology (KAUST)Thuwal23955‐6900Saudi Arabia
| | - Rhiannon K. Schilling
- School of Agriculture Food & Wine and Waite Research InstituteUniversity of AdelaideUrrbraeSA5064Australia
- Australian Centre for Plant Functional GenomicsPMB 1, Glen OsmondAdelaideSouth Australia5064Australia
| | - Julian Taylor
- School of Agriculture Food & Wine and Waite Research InstituteUniversity of AdelaideUrrbraeSA5064Australia
| | - David Jarvis
- Division of Biological and Environmental Sciences and Engineering (BESE)King Abdullah University of Science and Technology (KAUST)Thuwal23955‐6900Saudi Arabia
| | - Andy Timmins
- School of Agriculture Food & Wine and Waite Research InstituteUniversity of AdelaideUrrbraeSA5064Australia
- Australian Centre for Plant Functional GenomicsPMB 1, Glen OsmondAdelaideSouth Australia5064Australia
| | - Stuart J. Roy
- School of Agriculture Food & Wine and Waite Research InstituteUniversity of AdelaideUrrbraeSA5064Australia
- Australian Centre for Plant Functional GenomicsPMB 1, Glen OsmondAdelaideSouth Australia5064Australia
| | - Mark Tester
- Division of Biological and Environmental Sciences and Engineering (BESE)King Abdullah University of Science and Technology (KAUST)Thuwal23955‐6900Saudi Arabia
| | - Bettina Berger
- Australian Plant Phenomics FacilityThe Plant AcceleratorSchool of Agriculture Food & WineUniversity of AdelaideUrrbraeSA5064Australia
- School of Agriculture Food & Wine and Waite Research InstituteUniversity of AdelaideUrrbraeSA5064Australia
| | - Anton van den Hengel
- Australian Center for Visual TechnologiesUniversity of AdelaideAdelaideSA5005Australia
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Pham AT, Maurer A, Pillen K, Brien C, Dowling K, Berger B, Eglinton JK, March TJ. Genome-wide association of barley plant growth under drought stress using a nested association mapping population. BMC Plant Biol 2019; 19:134. [PMID: 30971212 PMCID: PMC6458831 DOI: 10.1186/s12870-019-1723-0] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2018] [Accepted: 03/17/2019] [Indexed: 05/22/2023]
Abstract
BACKGROUND Barley (Hordeum vulgare L.) is the fourth most important cereal crop worldwide. Barley production is compromised by many abiotic stresses including drought. Wild barley is a valuable source of alleles that can improve adaptation of cultivated barley to drought stress. RESULTS In the present study, a nested association mapping population named HEB-25, consisting of 1420 BC1S3 lines that were developed by crossing 25 different wild barley accessions to the elite barley cultivar 'Barke', was evaluated under both control and drought-stressed conditions in the Australian Plant Phenomics Facility, University of Adelaide. Overall, 14 traits reflecting the performance of individual plants in each treatment were calculated from non-destructive imaging over time and destructive end-of-experiment measurements. For each trait, best linear unbiased estimators (BLUEs) were calculated and used for genome-wide association study (GWAS) analysis. Among the quantitative trait loci (QTL) identified for the 14 traits, many co-localise with known inflorescence and developmental genes. We identified a QTL on chromosome 4H where, under drought and control conditions, wild barley alleles increased biomass by 10 and 17% respectively compared to the Barke allele. CONCLUSIONS Across all traits, QTL which increased phenotypic values were identified, providing a wider range of genetic diversity for the improvement of drought tolerance in barley.
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Affiliation(s)
- Anh-Tung Pham
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064 Australia
| | - Andreas Maurer
- Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Betty-Heimann-Str. 3, 06120 Halle, Germany
| | - Klaus Pillen
- Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Betty-Heimann-Str. 3, 06120 Halle, Germany
| | - Chris Brien
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064 Australia
- Phenomics and Bioinformatics Research Centre, University of South Australia, North Terrace, Adelaide, SA 5000 Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, University of Adelaide, Waite Campus, Urrbrae, SA 5064 Australia
| | - Kate Dowling
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064 Australia
- Phenomics and Bioinformatics Research Centre, University of South Australia, North Terrace, Adelaide, SA 5000 Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, University of Adelaide, Waite Campus, Urrbrae, SA 5064 Australia
| | - Bettina Berger
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064 Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, University of Adelaide, Waite Campus, Urrbrae, SA 5064 Australia
| | - Jason K. Eglinton
- Sugar Research Australia, 71378 Bruce Highway, Gordonvale, QLD 4865 Australia
| | - Timothy J. March
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064 Australia
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Watts-Williams SJ, Jewell N, Brien C, Berger B, Garnett T, Cavagnaro TR. Using High-Throughput Phenotyping to Explore Growth Responses to Mycorrhizal Fungi and Zinc in Three Plant Species. Plant Phenomics 2019; 2019:5893953. [PMID: 33313531 PMCID: PMC7718633 DOI: 10.34133/2019/5893953] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2018] [Accepted: 02/21/2019] [Indexed: 05/14/2023]
Abstract
There are many reported benefits to plants of arbuscular mycorrhizal fungi (AMF), including positive plant biomass responses; however, AMF can also induce biomass depressions in plants, and this response receives little attention in the literature. High-throughput phenotyping (HTP) technology permits repeated measures of an individual plant's aboveground biomass. We examined the effect on AMF inoculation on the shoot biomass of three contrasting plant species: a vegetable crop (tomato), a cereal crop (barley), and a pasture legume (Medicago). We also considered the interaction of mycorrhizal growth responses with plant-available soil zinc (Zn) and phosphorus (P) concentrations. The appearance of a depression in shoot biomass due to inoculation with AMF occurred at different times for each plant species; depressions appeared earliest in tomato, then Medicago, and then barley. The usually positive-responding Medicago plants were not responsive at the high level of soil available P used. Mycorrhizal growth responsiveness in all three species was also highly interactive with soil Zn supply; tomato growth responded negatively to AMF inoculation in all soil Zn treatments except the toxic soil Zn treatment, where it responded positively. Our results illustrate how context-dependent mycorrhizal growth responses are and the value of HTP approaches to exploring the complexity of mycorrhizal responses.
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Affiliation(s)
- S. J. Watts-Williams
- The School of Agriculture, Food and Wine, and The Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
- Australian Research Council Centre of Excellence in Plant Energy Biology, The University of Adelaide, Glen Osmond, SA, Australia
| | - N. Jewell
- The School of Agriculture, Food and Wine, and The Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia
| | - C. Brien
- The School of Agriculture, Food and Wine, and The Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia
| | - B. Berger
- The School of Agriculture, Food and Wine, and The Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia
| | - T. Garnett
- The School of Agriculture, Food and Wine, and The Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia
| | - T. R. Cavagnaro
- The School of Agriculture, Food and Wine, and The Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
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Schmidt D, Berger B, Kahlert M, Bayer M, Schneider C, Höfling S, Sedov ES, Kavokin AV, Aßmann M. Tracking Dark Excitons with Exciton Polaritons in Semiconductor Microcavities. Phys Rev Lett 2019; 122:047403. [PMID: 30768323 DOI: 10.1103/physrevlett.122.047403] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Revised: 10/30/2018] [Indexed: 05/13/2023]
Abstract
Dark excitons are of fundamental importance for a wide variety of processes in semiconductors but are difficult to investigate using optical techniques due to their weak interaction with light fields. We reveal and characterize dark excitons nonresonantly injected into a semiconductor microcavity structure containing InGaAs/GaAs quantum wells by a gated train of eight 100 fs pulses separated by 13 ns by monitoring their interactions with the bright lower polariton mode. We find a surprisingly long dark exciton lifetime of more than 20 ns, which is longer than the time delay between two consecutive pulses. This creates a memory effect that we clearly observe through the variation of the time-resolved transmission signal. We propose a rate equation model that provides a quantitative agreement with the experimental data.
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Affiliation(s)
- D Schmidt
- Experimentelle Physik 2, Technische Universität Dortmund, D-44221 Dortmund, Germany
| | - B Berger
- Experimentelle Physik 2, Technische Universität Dortmund, D-44221 Dortmund, Germany
| | - M Kahlert
- Experimentelle Physik 2, Technische Universität Dortmund, D-44221 Dortmund, Germany
| | - M Bayer
- Experimentelle Physik 2, Technische Universität Dortmund, D-44221 Dortmund, Germany
- A. F. Ioffe Physical-Technical Institute, Russian Academy of Sciences, St. Petersburg 194021, Russia
| | - C Schneider
- Technische Physik, Universität Würzburg, 97074 Würzburg, Germany
| | - S Höfling
- Technische Physik, Universität Würzburg, 97074 Würzburg, Germany
- SUPA, School of Physics and Astronomy, University of St. Andrews, St. Andrews KY16 9SS, United Kingdom
| | - E S Sedov
- School of Physics and Astronomy, University of Southampton, SO17 1NJ Southampton, United Kingdom
- Vladimir State University named after A. G. and N. G. Stoletovs, Gorky Street 87, 600000, Vladimir, Russia
| | - A V Kavokin
- Spin Optics Laboratory, St. Petersburg State University, Ulanovskaya 1, Peterhof, St. Petersburg 198504, Russia
- International Center for Polaritonics, Westlake University, No. 18, Shilongshan Road, Cloud Town, Xihu District, Hangzhou, China
| | - M Aßmann
- Experimentelle Physik 2, Technische Universität Dortmund, D-44221 Dortmund, Germany
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Kröz M, Mehl A, Didwiszus A, Gelin-Kröz B, Reif M, Berger B, Ten Brink F, Zerm R, Girke M, Gutenbrunner C, Büssing A. Reliability and first validity of the inner correspondence questionnaire for painting therapy (ICPTh) in a sample of breast cancer patients. Complement Ther Med 2019; 42:355-360. [PMID: 30670266 DOI: 10.1016/j.ctim.2018.12.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2018] [Revised: 12/04/2018] [Accepted: 12/04/2018] [Indexed: 01/31/2023] Open
Abstract
Objectives Art therapy (ArT) such as mindfulness-oriented painting therapy is increasingly used in psychosomatic, oncological integrative and rehabilitative medicine. Though it remains unknown how ArT works, we hypothesize that an engaged participation with painting ('Inner-Correspondence') contributes to improved symptom scores. In the context of a comprehensive cohort study for breast cancer survivors with cancer-related fatigue, we developed a patient-reported outcome measure to assess 'Inner Correspondence' with painting therapy and conducted a first validation study. Design A 24-item questionnaire on 'Inner Correspondence' (ICPTh) was administered after ten weeks of intervention and at six month followup together with concurrent scales (Inner Correspondence and Peaceful Harmony, Cancer Fatigue Scale, Hospital Anxiety and Depression Scale, Internal Coherence Scale). Statistical assessment included reliability- and factor analyses. Results A total of n = 68 BC (mean age, 58.2 years, SD = 8.7) participated in the preliminary validation study. Exploratory factor analysis revealed a robust 22-item scale with an unambiguous four-factor solution explaining 78% of total variance and the following subsales: 1) therapy congruence and relaxation (11 items), 2) inner development and mood (6 items), 3) artistic skill (3 items) and 4) task congruence (2 items). The 22-item ICPTh yielded high reliability (Cronbach's alpha = .966, item-total correlation = .497 - .883, test-retest reliability = .888). Conclusions We present a reliable instrument to measure 'Inner Correspondence' with painting therapy. Due to the small sample size and sample selection further validation studies are indicated.
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Affiliation(s)
- M Kröz
- Department of Internal Medicine Havelhöhe Hospital, Kladower Damm 221, 14089 Berlin, Germany; Research Institute Havelhöhe, Kladower Damm 221, 14089, Berlin, Germany; Institute for Social Medicine, Epidemiology and Health Economics, Charité Universitätsmedizin Berlin, Luisenstraße 57, 10117, Berlin, Germany; Institute of Integrative Medicine, Witten/Herdecke University, Alfred-Herrhausen-Straße 50, 58448, Witten, Germany.
| | - A Mehl
- Research Institute Havelhöhe, Kladower Damm 221, 14089, Berlin, Germany.
| | - A Didwiszus
- Department of Internal Medicine Havelhöhe Hospital, Kladower Damm 221, 14089 Berlin, Germany; Research Institute Havelhöhe, Kladower Damm 221, 14089, Berlin, Germany.
| | - B Gelin-Kröz
- Department of Internal Medicine Havelhöhe Hospital, Kladower Damm 221, 14089 Berlin, Germany; Research Institute Havelhöhe, Kladower Damm 221, 14089, Berlin, Germany.
| | - M Reif
- Society for Clinical Research, Hardenbergstraße 19, 10623, Berlin, Germany.
| | - B Berger
- Institute of Integrative Medicine, Witten/Herdecke University, Alfred-Herrhausen-Straße 50, 58448, Witten, Germany.
| | - F Ten Brink
- Clinic for Rehabilitative Medicine, Hannover Medical School, Carl-Neuberg-Straße 1, 30625, Hannover, Germany.
| | - R Zerm
- Department of Internal Medicine Havelhöhe Hospital, Kladower Damm 221, 14089 Berlin, Germany; Research Institute Havelhöhe, Kladower Damm 221, 14089, Berlin, Germany.
| | - M Girke
- Department of Internal Medicine Havelhöhe Hospital, Kladower Damm 221, 14089 Berlin, Germany; Research Institute Havelhöhe, Kladower Damm 221, 14089, Berlin, Germany.
| | - C Gutenbrunner
- Clinic for Rehabilitative Medicine, Hannover Medical School, Carl-Neuberg-Straße 1, 30625, Hannover, Germany.
| | - A Büssing
- Institute of Integrative Medicine, Witten/Herdecke University, Alfred-Herrhausen-Straße 50, 58448, Witten, Germany.
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Yichie Y, Brien C, Berger B, Roberts TH, Atwell BJ. Salinity tolerance in Australian wild Oryza species varies widely and matches that observed in O. sativa. Rice (N Y) 2018; 11:66. [PMID: 30578452 PMCID: PMC6303227 DOI: 10.1186/s12284-018-0257-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Accepted: 12/03/2018] [Indexed: 05/02/2023]
Abstract
BACKGROUND Soil salinity is widespread in rice-producing areas globally, restricting both vegetative growth and grain yield. Attempts to improve the salt tolerance of Asian rice, Oryza sativa-the most salt sensitive of the major cereal crops-have met with limited success, due to the complexity of the trait and finite variation in salt responses among O. sativa lines. Naturally occurring variation among the more than 20 wild species of the Oryza genus has great potential to provide breeders with novel genes to improve resistance to salt. Here, through two distinct screening experiments, we investigated variation in salinity tolerance among accessions of two wild rice species endemic to Australia, O. meridionalis and O. australiensis, with O. sativa cultivars Pokkali and IR29 providing salt-tolerant and sensitive controls, respectively. RESULTS Rice plants were grown on soil supplemented with field-relevant concentrations of NaCl (0, 40, 80, and 100 mM) for 30 d, a period sufficient to reveal differences in growth and physiological traits. Two complementary screening approaches were used: destructive phenotyping and high-throughput image-based phenotyping. All genotypes displayed clear responses to salt treatment. In the first experiment, both salt-tolerant Pokkali and an O. australiensis accession (Oa-VR) showed the least reduction in biomass accumulation, SES score and chlorophyll content in response to salinity. Average shoot Na+/K+ values of these plants were the lowest among the genotypes tested. In the second experiment, plant responses to different levels of salt stress were quantified over time based on projected shoot area calculated from visible red-green-blue (RGB) and fluorescence images. Pokkali grew significantly faster than the other genotypes. Pokkali and Oa-VR plants displayed the same absolute growth rate under 80 and 100 mM, while Oa-D grew significantly slower with the same treatments. Oa-VR showed substantially less inhibition of growth in response to salinity when compared with Oa-D. Senescence was seen in Oa-D after 30 d treatment with 40 mM NaCl, while the putatively salt-tolerant Oa-VR had only minor leaf damage, even at higher salt treatments, with less than a 40% increase in relative senescence at 100 mM NaCl compared to 120% for Oa-VR. CONCLUSION The combination of our two screening experiments uncovered striking levels of salt tolerance diversity among the Australian wild rice accessions tested and enabled analysis of their growth responses to a range of salt levels. Our results validate image-based phenotyping as a valuable tool for quantitative measurement of plant responses to abiotic stresses. They also highlight the potential of exotic germplasm to provide new genetic variation for salinity tolerance in rice.
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Affiliation(s)
- Yoav Yichie
- Sydney Institute of Agriculture, University of Sydney, Sydney, Australia
| | - Chris Brien
- School of Agriculture Food and Wine, University of Adelaide, Adelaide, Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, Waite Research Institute, University of Adelaide, Adelaide, Australia
| | - Bettina Berger
- School of Agriculture Food and Wine, University of Adelaide, Adelaide, Australia
- Australian Plant Phenomics Facility, The Plant Accelerator, Waite Research Institute, University of Adelaide, Adelaide, Australia
| | - Thomas H. Roberts
- Sydney Institute of Agriculture, University of Sydney, Sydney, Australia
| | - Brian J. Atwell
- Department of Biological Sciences, Macquarie University, Sydney, Australia
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