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Rodrigues RA, Pizauro LJL, Varani ADM, de Almeida CC, Silva SR, Cardozo MV, MacInnes JI, Kropinski AM, Melo PDC, Ávila FA. Comparative genomics study of Staphylococcus aureus isolated from cattle and humans reveals virulence patterns exclusively associated with bovine clinical mastitis strains. Front Microbiol 2022; 13:1033675. [PMID: 36419431 PMCID: PMC9676464 DOI: 10.3389/fmicb.2022.1033675] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Accepted: 10/17/2022] [Indexed: 12/08/2023] Open
Abstract
Staphylococcus aureus causes nosocomial and intramammary infections in humans and cattle, respectively. A large number of virulence factors are thought to play important roles in the pathogenesis of this bacterium. Currently, genome-wide and data-analysis studies are being used to better understand its epidemiology. In this study, we conducted a genome wide comparison and phylogenomic analyses of S. aureus to find specific virulence patterns associated with clinical and subclinical mastitis strains in cattle and compare them with those of human origin. The presence/absence of key virulence factors such as adhesin, biofilm, antimicrobial resistance, and toxin genes, as well as the phylogeny and sequence type of the isolates were evaluated. A total of 248 genomes (27 clinical mastitis, 43 subclinical mastitis, 21 milk, 53 skin-related abscesses, 49 skin infections, and 55 pus from cellulitis) isolated from 32 countries were evaluated. We found that the cflA, fnbA, ebpS, spa, sdrC, coa, emp, vWF, atl, sasH, sasA, and sasF adhesion genes, as well as the aur, hglA, hglB, and hglC toxin genes were highly associated in clinical mastitis strains. The strains had diverse genetic origins (72 protein A and 48 sequence types with ST97, ST8 and ST152 being frequent in isolates from clinical mastitis, abscess, and skin infection, respectively). Further, our phylogenomic analyses suggested that zoonotic and/or zooanthroponotic transmission may have occurred. These findings contribute to a better understanding of S. aureus epidemiology and the relationships between adhesion mechanisms, biofilm formation, antimicrobial resistance, and toxins and could aid in the development of improved vaccines and strain genotyping methods.
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Affiliation(s)
- Romário Alves Rodrigues
- Department of Reproduction Pathology and One Health, Faculty of Agricultural and Veterinary Sciences, São Paulo State University, Jaboticabal, São Paulo, Brazil
| | - Lucas José Luduverio Pizauro
- Department of Agricultural and Environmental Sciences, Santa Cruz State University, Ilhéus, Bahia, Brazil
- Department of Agricultural and Environmental Biotechnology, Faculty of Agricultural and Veterinary Sciences, São Paulo State University, Jaboticabal, São Paulo, Brazil
| | - Alessandro de Mello Varani
- Department of Agricultural and Environmental Biotechnology, Faculty of Agricultural and Veterinary Sciences, São Paulo State University, Jaboticabal, São Paulo, Brazil
| | - Camila Chioda de Almeida
- Department of Reproduction Pathology and One Health, Faculty of Agricultural and Veterinary Sciences, São Paulo State University, Jaboticabal, São Paulo, Brazil
| | - Saura Rodrigues Silva
- Department of Agricultural and Environmental Biotechnology, Faculty of Agricultural and Veterinary Sciences, São Paulo State University, Jaboticabal, São Paulo, Brazil
| | - Marita Vedovelli Cardozo
- Laboratory of Microorganism Physiology, Minas Gerais State University, Passos, Minas Gerais, Brazil
| | - Janet I. MacInnes
- Department of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, ON, Canada
| | - Andrew M. Kropinski
- Department of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, ON, Canada
- Department of Food Science, University of Guelph, Guelph, ON, Canada
| | - Poliana de Castro Melo
- Department of Agricultural and Environmental Sciences, Santa Cruz State University, Ilhéus, Bahia, Brazil
| | - Fernando Antonio Ávila
- Department of Reproduction Pathology and One Health, Faculty of Agricultural and Veterinary Sciences, São Paulo State University, Jaboticabal, São Paulo, Brazil
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Pizauro LJL, de Almeida CC, Silva SR, MacInnes JI, Kropinski AM, Zafalon LF, de Avila FA, de Mello Varani A. Genomic comparisons and phylogenetic analysis of mastitis-related staphylococci with a focus on adhesion, biofilm, and related regulatory genes. Sci Rep 2021; 11:17392. [PMID: 34462461 PMCID: PMC8405628 DOI: 10.1038/s41598-021-96842-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2021] [Accepted: 08/10/2021] [Indexed: 02/07/2023] Open
Abstract
Mastitis is a common and costly disease on dairy farms, commonly caused by Staphylococcus spp. though the various species are associated with different clinical outcomes. In the current study, we performed genomic analyses to determine the prevalence of adhesion, biofilm, and related regulatory genes in 478 staphylococcal species isolated from clinical and subclinical mastitis cases deposited in public databases. The most prevalent adhesin genes (ebpS, atl, pls, sasH and sasF) were found in both clinical and subclinical isolates. However, the ebpS gene was absent in subclinical isolates of Staphylococcus arlettae, S. succinus, S. sciuri, S. equorun, S. galinarum, and S. saprophyticus. In contrast, the coa, eap, emp, efb, and vWbp genes were present more frequently in clinical (vs. subclincal) mastitis isolates and were highly correlated with the presence of the biofim operon (icaABCD) and its transcriptional regulator, icaR. Co-phylogenetic analyses suggested that many of these adhesins, biofilm, and associated regulatory genes could have been horizontally disseminated between clinical and subclinical isolates. Our results further suggest that several adhesins, biofilm, and related regulatory genes, which have been overlooked in previous studies, may be of use for virulence profiling of mastitis-related Staphylococcus strains or as potential targets for vaccine development.
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Affiliation(s)
- Lucas José Luduverio Pizauro
- grid.410543.70000 0001 2188 478XDepartment of Technology, Sao Paulo State University, Jaboticabal, Sao Paulo Brazil
| | - Camila Chioda de Almeida
- grid.410543.70000 0001 2188 478XDepartment of Microbiology, Sao Paulo State University, Jaboticabal, Sao Paulo Brazil
| | - Saura Rodrigues Silva
- grid.410543.70000 0001 2188 478XDepartment of Technology, Sao Paulo State University, Jaboticabal, Sao Paulo Brazil
| | - Janet I. MacInnes
- grid.34429.380000 0004 1936 8198Department of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, ON Canada
| | - Andrew M. Kropinski
- grid.34429.380000 0004 1936 8198Department of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, ON Canada
| | - Luiz Francisco Zafalon
- grid.460200.00000 0004 0541 873XBrazilian Agricultural Research Corporation (EMBRAPA), Embrapa Southeast Livestock, Sao Carlos, Sao Paulo Brazil
| | - Fernando Antônio de Avila
- grid.410543.70000 0001 2188 478XDepartment of Microbiology, Sao Paulo State University, Jaboticabal, Sao Paulo Brazil
| | - Alessandro de Mello Varani
- grid.410543.70000 0001 2188 478XDepartment of Technology, Sao Paulo State University, Jaboticabal, Sao Paulo Brazil
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Brassolatti LC, Antônio LDS, Almeida CCD, Pizauro LJL, Almeida HMDS, Rossi GAM. Comparison of microbiological quality between illegal and inspected salami. Arq Inst Biol 2021. [DOI: 10.1590/1808-1657000212020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Martinez M, Reis GS, Pinheiro PFF, Almeida CCD, Cagnon VHA, Mello-Júnior W, Pereira S, Padovani CR, Martinez FE. Evaluation of the ethanol intake on the Calomys callosus seminal vesicle structure. Micron 2007; 39:587-92. [PMID: 17693093 DOI: 10.1016/j.micron.2007.06.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2007] [Revised: 05/31/2007] [Accepted: 06/04/2007] [Indexed: 11/20/2022]
Abstract
The effects of chronic alcohol ingestion on the structure of the glandular epithelium of the seminal vesicle of the rodent Calomys callosus were analyzed in 24 adult animals aged 3 months divided into three experimental groups. The control group received a solid diet and tap water, the alcoholic group received the same solid diet and ethanol P.A. diluted 20% in water (v/v) for 4 months. The abstinent group received the same liquid diet of the alcoholic one for the same period and after that the alcoholic diet was changed by water for a period of 3 months. After treatment, all animals were anesthetized, weighed and sacrificed. At the end of treatment, mean body weight did not differ between animal groups. The glandular epithelial cells of the alcoholic and abstinent groups showed atrophy and ultrastructural alterations such as the presence of altered nuclei, intense dilatation of the cisterns of the granular endoplasmic reticulum, intense digestive vacuoles and lipid droplets. Ethanol ingestion provokes marked lesions on the epithelium of the seminal vesicle probably interfering on the glandular secretion.
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Affiliation(s)
- M Martinez
- Department of Morphology and Pathology, UFSCar, São Carlos, SP, Brazil.
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Martinez M, Milton FA, de Oliveira SA, Reis GS, Pereira S, Segatelli TM, Pinheiro PFF, Almeida CCD, Cagnon VHA, Mello W, Padovani CR, Martinez FE. Morphological alterations on the prostate of Calomys callosus submitted to chronic ethanol ingestion. J Submicrosc Cytol Pathol 2006; 38:117-23. [PMID: 17784639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
The objective of the present study was to assess the possible toxic effects of chronic alcohol ingestion on the ultrastructure of the glandular epithelium of the prostate of the rodent Calomys callosus, in order to contribute to the understanding of the consequences of alcohol abuse for the morphology of the male reproductive apparatus. Sixteen adult animals aged three months were divided into two experimental groups. The control group received a solid diet and tap water, and the alcoholic group received the same solid diet and ethanol P.A. diluted 20% in water (v/v). After 120 days of treatment, all animals were anesthetized, weighed and sacrificed. At the end of treatment, mean body weight did not differ between control and alcoholic animals. The prostate epithelial cells of the alcoholic group showed intense atrophy and ultrastructural alterations such as the presence of lipid droplets, altered nuclei, ruptured mitochondrial cristae, and intense dilatation of the cisterns of the granular endoplasmic reticulum. It was concluded that 20% ethanol provokes marked lesions on the epithelium of the prostate probably interfering on the glandular secretion.
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Affiliation(s)
- M Martinez
- Department of Morphology and Pathology, UFSCar, São Carlos, SP, Brazil.
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Martinez M, Milton FA, de Oliveira SA, de Lima NF, Segatelli TM, Pinheiro PFF, Almeida CCD, Mello W, Quitete VHAC, Martinez FE. Ultrastructural changes on the hard palatine mucosa of Calomys callosus after 120 days of experimental chronic alcoholism. J Submicrosc Cytol Pathol 2005; 37:59-65. [PMID: 16144085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
The present study analyzed the toxic effects of chronic alcohol ingestion on the ultrastructure of the lining epithelium of the hard palatine mucosa of the rodent Calomys callosus, in order to contribute to the understanding of the consequences of alcohol abuse for the morphology of the digestive system. Twenty-six adult animals aged three months were divided into two experimental groups. The control group received a solid diet and tap water, and the alcoholic group received the same solid diet and ethanol P.A. diluted 20% in water (v/v). After 120 days of treatment, all animals were anaesthetised, weighed and sacrificed. At the end of treatment, mean body weight did not differ between control and alcoholic animals. The epithelial cells of the alcoholic group showed many alterations such as the presence of lipid droplets, nuclei in corneum layer, nuclei with increase peripheral chromatin and greater electron density, altered mitochondria, and intense dilatation of the intercellular spaces. It was concluded that 20% ethanol provokes marked ultrastructural lesions in the hard palatine mucosa.
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Affiliation(s)
- M Martinez
- Department of Morphology and Pathology, Federal University of Sao Carlos, SP, Brazil.
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Rissato JH, Ietsugu MV, Almeida CCD, Pinheiro PFF, Segatelli TM, Martinez M, Padovani CR, Júnior WM, Quitete VHAC, Martinez FE. Morphology of the vas deferens in an ethanol-drinking strain of rats (UChA and UChB). J Submicrosc Cytol Pathol 2003; 35:331-41. [PMID: 14690183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 04/27/2023]
Abstract
Chronic alcoholism alters reproduction and therefore may be responsible for alterations of vas deferens, which are the subject of this analysis in UCh ethanol-drinking rats. The proximal and distal segments of the vas deferens of 20 animals were submitted to macroscopic, light microscopy, electron microscopy and morphometric analysis. The UCh rats showed atrophy of the epithelium of the vas deferens and alterations of the hypothalamus-pituitary axis. Ethanol induces changes in the epithelium of the vas deferens and hypothalamus-pituitary axis of UCh rats.
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Affiliation(s)
- J H Rissato
- Department of Anatomy, Institute of Biosciences, UNESP, Botucatu, SP, Brazil
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Pinheiro PFF, Almeida CCD, Segatelli TM, Martinez M, Padovani CR, Martinez FE. Ultrastructure of the urethra of the Mongolian gerbil. World J Urol 2003; 20:378-84. [PMID: 12811498 DOI: 10.1007/s00345-002-0311-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2002] [Accepted: 11/21/2002] [Indexed: 10/25/2022] Open
Abstract
OBJECTIVE The urethra is the main port of entry of sexually transmitted pathogens. However, papers on the morphology of the urethra are scarce. The Mongolian gerbil is a rodent native of the Mongolia and China and has been utilized as a laboratory animal since the 1960s. This work describes the ultrastructure of the urethra of the Mongolian gerbil to provide data for future experimental studies. METHODS The urethra of ten adult male gerbils was studied by transmission electron microscopy. RESULTS The epithelium of the pelvic urethra possesses two cell types: I and II, without the formation of cellular layers, while the penile urethra possesses cellular layers: basal, intermediate and superficial. The urethra presents neurosecretory cells belonging to the amine precursor uptake and decarboxylation system. CONCLUSIONS The urethral epithelium of the gerbil is a neurosecretory epithelium, part of the amine precursor uptake and decarboxylation system.
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Affiliation(s)
- P F F Pinheiro
- Department of Anatomy, Institute of Biosciences, Campus of Botucatu, UNESP, Rubião Júnior, Caixa Postal 510, CEP.: 18618-000 Botucatu SP, Brazil.
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Pinheiro PFF, Almeida CCD, Segatelli TM, Martinez M, Padovani CR, Martinez FE. Structure of the pelvic and penile urethra--relationship with the ducts of the sex accessory glands of the Mongolian gerbil (Meriones unguiculatus). J Anat 2003; 202:431-44. [PMID: 12739620 PMCID: PMC1571101 DOI: 10.1046/j.1469-7580.2003.00181.x] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The urethra is the main place of entry for sexually transmitted pathogens. However, there is little literature on the morphology of the urogenital system, principally the urethra and ducts of the sex accessory glands. The Mongolian gerbil is an insectivorous, herbivorous and monogamous rodent with nocturnal habits; it has been used successfully as a laboratory animal since the 1960s. Therefore, the objective of the present paper was to describe the structure and ultrastructure of the urethra and its relations to the ducts of the accessory sex glands of the Mongolian gerbil (Meriones unguiculatus), contributing to the understanding of the reproductive biology of the rodent and aiming to provide data for future experimental studies. Conventional techniques of light and scanning electron microscopy were utilized. The urethra and ducts of the accessory sex glands are similar to those of the albino rat and the mouse. However, there is variation in drainage type among accessory sex glands for the inner urethra. The ducts of the seminal vesicle, the ductus deferens, drain their contents independently into the ampullary duct that opens in the urethra. The ducts of the prostate, coagulating and bulbourethral glands drain their contents independently into the urethra.
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Affiliation(s)
- P F F Pinheiro
- Department of Anatomy, Institute of Biosciences, UNESP, Botucatu, SP, Brazil.
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Segatelli TM, Almeida CCD, Pinheiro PFF, Martinez M, Padovani CR, Martinez FE. Kinetics of spermatogenesis in the Mongolian gerbil (Meriones unguiculatus). Tissue Cell 2002; 34:7-13. [PMID: 11989971 DOI: 10.1054/tice.2002.0218] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The Mongolian gerbil (Meriones unguiculatus) is a small rodent native to the arid regions of Mongolia and Northeastern China. The present study provides descriptions of both the cellular associations of the seminiferous-epithelium cycle and relative frequencies of stages in the gerbil. Based on the development of the acrosomic system and the nuclear morphology changes using the PAS-H staining technique, the transformation of spermatids into spermatozoa was divided into 15 steps. The first 12 steps were used to identify 12 stages or cellular associations and the other three steps were spread among the first six stages of the cycle of the seminiferous epithelium. The relative frequencies found for stages I through XII were: 13.15; 8.06; 8.98; 6.48; 5.37; 6.71; 7.36; 7.45; 7.27; 5.83; 11.53 and 11.81, respectively. Stage I had the highest frequency while stage V proved the lowest frequency among the XII stages. The pattern of spermatogenesis is similar to those of rodents used as laboratory animals. The present description is the first for this rodent and provides the foundation for a variety of future studies of the testis in this animal.
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Affiliation(s)
- T M Segatelli
- Department of Anatomy, Institute of Biosciences, UNESP, Botucatu, SP, Brazil.
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Martinez M, Martinez FE, da Cunha MR, Segatelli TM, Pinheiro PFF, Almeida CCD. Morphological effects on the hard palatine mucosa of Calomys callosus submitted to experimental chronic alcoholism. J Submicrosc Cytol Pathol 2002; 34:77-83. [PMID: 11995638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
Abstract
The morphological effects of ethanol ingestion on the hard palatine mucosa of adult male Calomys callosus were observed. Twenty rodents were divided into two experimental groups: the control group received solid diet, Purina rat chow, and tap water ad libitum; the alcoholic group received the same solid diet and ethanol P.A. diluted 20% in water (v/v). After 270 days of treatment, all animals were sacrificed and the hard palatine mucosa were prepared for TEM and SEM methods. The epithelial cells of the alcoholic group showed some alterations like cytoplasmatic lipid droplets, pycnotic nucleus and increased mitochondrial size. The lamina propria also presented intense lipid droplets accumulation. The morphological changes suggested that chronic ethanol consumption was able to modify the integrity of the mucosa.
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Affiliation(s)
- M Martinez
- Department of Morphology and Pathology, Federal University of São Carlos, SP, Brazil.
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