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Daniel BBJ, Steiger Y, Sintsova A, Field CM, Nguyen BD, Schubert C, Cherrak Y, Sunagawa S, Hardt WD, Vorholt JA. Assessing microbiome population dynamics using wild-type isogenic standardized hybrid (WISH)-tags. Nat Microbiol 2024; 9:1103-1116. [PMID: 38503975 PMCID: PMC10994841 DOI: 10.1038/s41564-024-01634-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 02/09/2024] [Indexed: 03/21/2024]
Abstract
Microbiomes feature recurrent compositional structures under given environmental conditions. However, these patterns may conceal diverse underlying population dynamics that require intrastrain resolution. Here we developed a genomic tagging system, termed wild-type isogenic standardized hybrid (WISH)-tags, that can be combined with quantitative polymerase chain reaction and next-generation sequencing for microbial strain enumeration. We experimentally validated the performance of 62 tags and showed that they can be differentiated with high precision. WISH-tags were introduced into model and non-model bacterial members of the mouse and plant microbiota. Intrastrain priority effects were tested using one species of isogenic barcoded bacteria in the murine gut and the Arabidopsis phyllosphere, both with and without microbiota context. We observed colonization resistance against late-arriving strains of Salmonella Typhimurium in the mouse gut, whereas the phyllosphere accommodated Sphingomonas latecomers in a manner proportional to their presence at the late inoculation timepoint. This demonstrates that WISH-tags are a resource for deciphering population dynamics underlying microbiome assembly across biological systems.
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Affiliation(s)
| | - Yves Steiger
- Institute of Microbiology, ETH Zurich, Zurich, Switzerland
| | - Anna Sintsova
- Institute of Microbiology, ETH Zurich, Zurich, Switzerland
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Schubert C, Unden G. Regulation of Aerobic Succinate Transporter dctA of E. coli by cAMP-CRP, DcuS-DcuR, and EIIAGlc: Succinate as a Carbon Substrate and Signaling Molecule. Microb Physiol 2024; 34:108-120. [PMID: 38432210 DOI: 10.1159/000538095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 02/24/2024] [Indexed: 03/05/2024]
Abstract
INTRODUCTION C4-dicarboxylates (C4-DC) have emerged as significant growth substrates and signaling molecules for various Enterobacteriaceae during their colonization of mammalian hosts. Particularly noteworthy is the essential role of fumarate respiration during colonization of pathogenic bacteria. To investigate the regulation of aerobic C4-DC metabolism, the study explored the transcriptional control of the main aerobic C4-DC transporter, dctA, under different carbohydrate conditions. In addition, mutants related to carbon catabolite repression (CCR) and C4-DC regulation (DcuS-DcuR) were examined to better understand the regulatory integration of aerobic C4-DC metabolism into CCR. For initial insight into posttranslational regulation, the interaction between the aerobic C4-DC transporter DctA and EIIAGlc from the glucose-specific phosphotransferase system was investigated. METHODS The expression of dctA was characterized in the presence of various carbohydrates and regulatory mutants affecting CCR. This was accomplished by fusing the dctA promoter (PdctA) to the lacZ reporter gene. Additionally, the interaction between DctA and EIIAGlc of the glucose-specific phosphotransferase system was examined in vivo using a bacterial two-hybrid system. RESULTS The dctA promoter region contains a class I cAMP-CRP-binding site at position -81.5 and a DcuR-binding site at position -105.5. DcuR, the response regulator of the C4-DC-activated DcuS-DcuR two-component system, and cAMP-CRP stimulate dctA expression. The expression of dctA is subject to the influence of various carbohydrates via cAMP-CRP, which differently modulate cAMP levels. Here we show that EIIAGlc of the glucose-specific phosphotransferase system strongly interacts with DctA, potentially resulting in the exclusion of C4-DCs when preferred carbon substrates, such as sugars, are present. In contrast to the classical inducer exclusion known for lactose permease LacY, inhibition of C4-DC uptake into the cytoplasm affects only its role as a substrate, but not as an inducer since DcuS detects C4-DCs in the periplasmic space ("substrate exclusion"). The work shows an interplay between cAMP-CRP and the DcuS-DcuR regulatory system for the regulation of dctA at both transcriptional and posttranslational levels. CONCLUSION The study highlights a hierarchical interplay between global (cAMP-CRP) and specific (DcuS-DcuR) regulation of dctA at the transcriptional and posttranslational levels. The integration of global and specific transcriptional regulation of dctA, along with the influence of EIIAGlc on DctA, fine-tunes C4-DC catabolism in response to the availability of other preferred carbon sources. It attributes DctA a central role in the control of aerobic C4-DC catabolism and suggests a new role to EIIAGlc on transporters (control of substrate uptake by substrate exclusion).
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Affiliation(s)
- Christopher Schubert
- Institute for Molecular Physiology (IMP), Microbiology and Wine Research, Johannes Gutenberg-University, Mainz, Germany
- Institute of Microbiology, ETH Zurich, Zurich, Switzerland
| | - Gottfried Unden
- Institute for Molecular Physiology (IMP), Microbiology and Wine Research, Johannes Gutenberg-University, Mainz, Germany,
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Kirsten-Siemß JN, Fitzek F, Schubert C, Rasel EM, Gaaloul N, Hammerer K. Large-Momentum-Transfer Atom Interferometers with μrad-Accuracy Using Bragg Diffraction. Phys Rev Lett 2023; 131:033602. [PMID: 37540849 DOI: 10.1103/physrevlett.131.033602] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2022] [Revised: 02/20/2023] [Accepted: 05/25/2023] [Indexed: 08/06/2023]
Abstract
Large-momentum-transfer (LMT) atom interferometers using elastic Bragg scattering on light waves are among the most precise quantum sensors to date. To advance their accuracy from the mrad to the μrad regime, it is necessary to understand the rich phenomenology of the Bragg interferometer, which differs significantly from that of a standard two-mode interferometer. We develop an analytic model for the interferometer signal and demonstrate its accuracy using comprehensive numerical simulations. Our analytic treatment allows the determination of the atomic projection noise limit of a LMT Bragg interferometer and provides the means to saturate this limit. It affords accurate knowledge of the systematic phase errors as well as their suppression by 2 orders of magnitude down to a few μrad using appropriate light-pulse parameters.
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Affiliation(s)
- J-N Kirsten-Siemß
- Leibniz Universität Hannover, Institut für Theoretische Physik, Appelstraße 2, D-30167 Hannover, Germany
- Leibniz Universität Hannover, Institut für Quantenoptik, Welfengarten 1, D-30167 Hannover, Germany
| | - F Fitzek
- Leibniz Universität Hannover, Institut für Theoretische Physik, Appelstraße 2, D-30167 Hannover, Germany
- Leibniz Universität Hannover, Institut für Quantenoptik, Welfengarten 1, D-30167 Hannover, Germany
| | - C Schubert
- Leibniz Universität Hannover, Institut für Quantenoptik, Welfengarten 1, D-30167 Hannover, Germany
- Deutsches Zentrum für Luft- und Raumfahrt e.V. (DLR), Institut für Satellitengeodäsie und Inertialsensorik, Callinstraße 30b, D-30167 Hannover, Germany
| | - E M Rasel
- Leibniz Universität Hannover, Institut für Quantenoptik, Welfengarten 1, D-30167 Hannover, Germany
| | - N Gaaloul
- Leibniz Universität Hannover, Institut für Quantenoptik, Welfengarten 1, D-30167 Hannover, Germany
| | - K Hammerer
- Leibniz Universität Hannover, Institut für Theoretische Physik, Appelstraße 2, D-30167 Hannover, Germany
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Schubert C, Unden G. Fumarate, a central electron acceptor for Enterobacteriaceae beyond fumarate respiration and energy conservation. Adv Microb Physiol 2023; 82:267-299. [PMID: 36948656 DOI: 10.1016/bs.ampbs.2022.10.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
C4-dicarboxylates (C4-DCs) such as fumarate, l-malate and l-aspartate are key substrates for Enterobacteria such as Escherichia coli or Salmonella typhimurium during anaerobic growth. In general, C4-DCs are oxidants during biosynthesis, e.g., of pyrimidine or heme, acceptors for redox balancing, a high-quality nitrogen source (l-aspartate) and electron acceptor for fumarate respiration. Fumarate reduction is required for efficient colonization of the murine intestine, even though the colon contains only small amounts of C4-DCs. However, fumarate can be produced endogenously by central metabolism, allowing autonomous production of an electron acceptor for biosynthesis and redox balancing. Bacteria possess a complex set of transporters for the uptake (DctA), antiport (DcuA, DcuB, TtdT) and excretion (DcuC) of C4-DCs. DctA and DcuB exert regulatory functions and link transport to metabolic control through interaction with regulatory proteins. The sensor kinase DcuS of the C4-DC two-component system DcuS-DcuR forms complexes with DctA (aerobic) or DcuB (anaerobic), representing the functional state of the sensor. Moreover, EIIAGlc from the glucose phospho-transferase system binds to DctA and presumably inhibits C4-DC uptake. Overall, the function of fumarate as an oxidant in biosynthesis and redox balancing explains the pivotal role of fumarate reductase for intestinal colonization, while the role of fumarate in energy conservation (fumarate respiration) is of minor importance.
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Affiliation(s)
- Christopher Schubert
- Institute for Molecular Physiology (IMP), Microbiology and Biotechnology; Johannes Gutenberg-University, Mainz, Germany; Institute of Microbiology, ETH Zurich, Zurich, Switzerland.
| | - Gottfried Unden
- Institute for Molecular Physiology (IMP), Microbiology and Biotechnology; Johannes Gutenberg-University, Mainz, Germany.
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5
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Schubert C, Kim NY, Unden G, Kim OB. C4-dicarboxylate metabolons: interaction of C4-dicarboxylate transporters of Escherichia coli with cytosolic enzymes. FEMS Microbiol Lett 2022; 369:6679557. [PMID: 36044995 DOI: 10.1093/femsle/fnac078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Revised: 05/02/2022] [Accepted: 08/16/2022] [Indexed: 11/13/2022] Open
Abstract
Metabolons represent the structural organization of proteins for metabolic or regulatory pathways. Here the interaction of fumarase FumB, aspartase AspA, and L-tartrate dehydratase TtdAB with the C4-dicarboxylate (C4-DC) transporters DcuA, DcuB, DcuC, and the L-tartrate transporter TtdT of Escherichia coli was tested by a bacterial two-hybrid (BACTH) assay in situ, or by co-chromatography using mSPINE (membrane Streptavidin protein interaction experiment). From the general C4-DC transporters, DcuB interacted with FumB and AspA, DcuA with AspA, whereas DcuC interacted with neither FumB nor AspA. Moreover, TtdT did not interact with TtdAB. The fumB-dcuB, the dcuA-aspA, and the ttdAB-ttdT genes encoding the respective proteins co-localize on the genome and each pair of genes forms co-transcripts whereas the dcuC gene lies alone. The data suggest the formation of DcuB/FumB and DcuB/AspA metabolons for the uptake of L-malate, or L-aspartate, and their conversion to fumarate for fumarate respiration and excretion of the product succinate. The DcuA/AspA metabolon catalyzes uptake and conversion of L-Asp to fumarate coupled to succinate excretion. The DcuA/AspA metabolon provides ammonia at the same time for nitrogen assimilation (ammonia shuttle). On the other hand, TtdT and TtdAB are not organized in a metabolon. Reasons for the formation (DcuA/AspA, DcuB/FumB, DcuB/AspA) or non-formation (DcuC, TtdT and TtdAB) of metabolons are discussed based on their metabolic roles.
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Affiliation(s)
- Christopher Schubert
- Institute for Molecular Physiology, Johannes Gutenberg-University, Mainz, Germany
| | - Nam Yeun Kim
- Department of Life Science, Ewha Womans University, Seoul, Korea
| | - Gottfried Unden
- Institute for Molecular Physiology, Johannes Gutenberg-University, Mainz, Germany
| | - Ok Bin Kim
- Department of Life Science, Ewha Womans University, Seoul, Korea
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Tzvi-Minker E, Alizadeh J, Schubert C, Classen J. P 54 Multivariate pattern analysis reveals location specific aftereffects of 10Hz motor cortex transcranial alternating current stimulation. Clin Neurophysiol 2022. [DOI: 10.1016/j.clinph.2022.01.085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Anders F, Idel A, Feldmann P, Bondarenko D, Loriani S, Lange K, Peise J, Gersemann M, Meyer-Hoppe B, Abend S, Gaaloul N, Schubert C, Schlippert D, Santos L, Rasel E, Klempt C. Momentum Entanglement for Atom Interferometry. Phys Rev Lett 2021; 127:140402. [PMID: 34652182 DOI: 10.1103/physrevlett.127.140402] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 09/03/2021] [Indexed: 06/13/2023]
Abstract
Compared to light interferometers, the flux in cold-atom interferometers is low and the associated shot noise is large. Sensitivities beyond these limitations require the preparation of entangled atoms in different momentum modes. Here, we demonstrate a source of entangled atoms that is compatible with state-of-the-art interferometers. Entanglement is transferred from the spin degree of freedom of a Bose-Einstein condensate to well-separated momentum modes, witnessed by a squeezing parameter of -3.1(8) dB. Entanglement-enhanced atom interferometers promise unprecedented sensitivities for quantum gradiometers or gravitational wave detectors.
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Affiliation(s)
- F Anders
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - A Idel
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - P Feldmann
- Institut für Theoretische Physik, Leibniz Universität Hannover, Appelstraße 2, D-30167 Hannover, Germany
| | - D Bondarenko
- Institut für Theoretische Physik, Leibniz Universität Hannover, Appelstraße 2, D-30167 Hannover, Germany
| | - S Loriani
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - K Lange
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - J Peise
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - M Gersemann
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - B Meyer-Hoppe
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - S Abend
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - N Gaaloul
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - C Schubert
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
- Deutsches Zentrum für Luft- und Raumfahrt e.V. (DLR), Institut für Satellitengeodäsie und Inertialsensorik, c/o Leibniz, Universität Hannover, DLR-SI, Callinstraße 36, 30167 Hannover, Germany
| | - D Schlippert
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - L Santos
- Institut für Theoretische Physik, Leibniz Universität Hannover, Appelstraße 2, D-30167 Hannover, Germany
| | - E Rasel
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - C Klempt
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
- Deutsches Zentrum für Luft- und Raumfahrt e.V. (DLR), Institut für Satellitengeodäsie und Inertialsensorik, c/o Leibniz, Universität Hannover, DLR-SI, Callinstraße 36, 30167 Hannover, Germany
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8
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Stopp M, Schubert C, Unden G. Conversion of the Sensor Kinase DcuS to the Fumarate Sensitive State by Interaction of the Bifunctional Transporter DctA at the TM2/PAS C-Linker Region. Microorganisms 2021; 9:microorganisms9071397. [PMID: 34203512 PMCID: PMC8307970 DOI: 10.3390/microorganisms9071397] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 06/13/2021] [Accepted: 06/21/2021] [Indexed: 11/16/2022] Open
Abstract
The membrane-bound C4-dicarboxylate (C4DC) sensor kinase DcuS of Escherichia coli typically forms a protein complex with the C4DC transporter DctA. The DctA × DcuS complex is able to respond to C4DCs, whereas DcuS without DctA is in the permanent ON state. In DctA, the C-terminal helix 8b (H8b) serves as the site for interaction with DcuS. Here the interaction site in DcuS and the related structural and functional adaptation in DcuS were determined. The Linker connecting transmembrane helix 2 (TM2) and the cytosolic PASC (Per-ARNT-SIM) domain of DcuS, was identified as the major site for interaction with DctA-H8b by in vivo interaction studies. The Linker is known to convert the piston-type transmembrane signaling of TM2 to a tilting motion which relies on a resolution of the Linker-Linker’ homodimer in the presence of C4DCs. Absence of DctA caused decreased cross-linking in the Linker, as identified by oxidative Cys-cross-linking. This response resembled structurally and functionally that of fumarate activation in the DctA × DcuS complex. Overall, formation of the DctA × DcuS complex is based on the interaction of the DcuS Linker with DctA H8b; the interaction is required to set DcuS in the C4DC-responsive state by stabilizing the linker-linker’ homodimer in DcuS. This work identifies DctA as a structural co-regulator of DcuS sensor kinase.
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Schubert C, Winter M, Ebert‐Jung A, Kierszniowska S, Nagel‐Wolfrum K, Schramm T, Link H, Winter S, Unden G. C4
‐dicarboxylates and
l
‐aspartate utilization by
Escherichia coli
K‐12 in the mouse intestine:
l
‐aspartate as a major substrate for fumarate respiration and as a nitrogen source. Environ Microbiol 2021; 23:2564-2577. [DOI: 10.1111/1462-2920.15478] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 03/12/2021] [Accepted: 03/18/2021] [Indexed: 11/29/2022]
Affiliation(s)
- Christopher Schubert
- Institute for Molecular Physiology Johannes Gutenberg‐University Mainz Mainz 55099 Germany
| | - Maria Winter
- Department of Microbiology UT Southwestern Medical Center Dallas TX 75287 USA
| | - Andrea Ebert‐Jung
- Institute for Molecular Physiology Johannes Gutenberg‐University Mainz Mainz 55099 Germany
| | | | - Kerstin Nagel‐Wolfrum
- Institute for Molecular Physiology Johannes Gutenberg‐University Mainz Mainz 55099 Germany
| | - Thorben Schramm
- Max Planck Institute for Terrestrial Microbiology Karl‐von‐Frisch‐Straße 10 Marburg 35043 Germany
| | - Hannes Link
- Max Planck Institute for Terrestrial Microbiology Karl‐von‐Frisch‐Straße 10 Marburg 35043 Germany
| | - Sebastian Winter
- Department of Microbiology UT Southwestern Medical Center Dallas TX 75287 USA
| | - Gottfried Unden
- Institute for Molecular Physiology Johannes Gutenberg‐University Mainz Mainz 55099 Germany
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Stopp M, Steinmetz PA, Schubert C, Griesinger C, Schneider D, Unden G. Transmembrane signaling and cytoplasmic signal conversion by dimeric transmembrane helix 2 and a linker domain of the DcuS sensor kinase. J Biol Chem 2020; 296:100148. [PMID: 33277358 PMCID: PMC7857512 DOI: 10.1074/jbc.ra120.015999] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Revised: 11/30/2020] [Accepted: 12/04/2020] [Indexed: 01/16/2023] Open
Abstract
Transmembrane (TM) signaling is a key process of membrane-bound sensor kinases. The C4-dicarboxylate (fumarate) responsive sensor kinase DcuS of Escherichia coli is anchored by TM helices TM1 and TM2 in the membrane. Signal transmission across the membrane relies on the piston-type movement of the periplasmic part of TM2. To define the role of TM2 in TM signaling, we use oxidative Cys cross-linking to demonstrate that TM2 extends over the full distance of the membrane and forms a stable TM homodimer in both the inactive and fumarate-activated state of DcuS. An S186xxxGxxxG194 motif is required for the stability and function of the TM2 homodimer. The TM2 helix further extends on the periplasmic side into the α6-helix of the sensory PASP domain and on the cytoplasmic side into the α1-helix of PASC. PASC has to transmit the signal to the C-terminal kinase domain. A helical linker on the cytoplasmic side connecting TM2 with PASC contains an LxxxLxxxL sequence. The dimeric state of the linker was relieved during fumarate activation of DcuS, indicating structural rearrangements in the linker. Thus, DcuS contains a long α-helical structure reaching from the sensory PASP (α6) domain across the membrane to α1(PASC). Taken together, the results suggest piston-type TM signaling by the TM2 homodimer from PASP across the full TM region, whereas the fumarate-destabilized linker dimer converts the signal on the cytoplasmic side for PASC and kinase regulation.
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Affiliation(s)
- Marius Stopp
- Microbiology and Wine Research, Institute for Molecular Physiology, Johannes Gutenberg University Mainz, Mainz, Germany
| | - Philipp Aloysius Steinmetz
- Microbiology and Wine Research, Institute for Molecular Physiology, Johannes Gutenberg University Mainz, Mainz, Germany
| | - Christopher Schubert
- Microbiology and Wine Research, Institute for Molecular Physiology, Johannes Gutenberg University Mainz, Mainz, Germany
| | - Christian Griesinger
- Department of NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry, Gottingen, Germany
| | - Dirk Schneider
- Department of Chemistry, Biochemistry, Johannes Gutenberg University Mainz, Mainz, Germany
| | - Gottfried Unden
- Microbiology and Wine Research, Institute for Molecular Physiology, Johannes Gutenberg University Mainz, Mainz, Germany.
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Schubert C, Zedler S, Strecker A, Unden G. L-Aspartate as a high-quality nitrogen source in Escherichia coli: Regulation of L-aspartase by the nitrogen regulatory system and interaction of L-aspartase with GlnB. Mol Microbiol 2020; 115:526-538. [PMID: 33012071 DOI: 10.1111/mmi.14620] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Revised: 09/28/2020] [Indexed: 11/29/2022]
Abstract
Escherichia coli uses the C4-dicarboxylate transporter DcuA for L-aspartate/fumarate antiport, which results in the exploitation of L-aspartate for fumarate respiration under anaerobic conditions and for nitrogen assimilation under aerobic and anaerobic conditions. L-Aspartate represents a high-quality nitrogen source for assimilation. Nitrogen assimilation from L-aspartate required DcuA, and aspartase AspA to release ammonia. Ammonia is able to provide by established pathways the complete set of intracellular precursors (ammonia, L-aspartate, L-glutamate, and L-glutamine) for synthesizing amino acids, nucleotides, and amino sugars. AspA was regulated by a central regulator of nitrogen metabolism, GlnB. GlnB interacted with AspA and stimulated its L-aspartate deaminase activity (NH3 -forming), but not the reverse amination reaction. GlnB stimulation required 2-oxoglutarate and ATP, or uridylylated GlnB-UMP, consistent with the activation of nitrogen assimilation under nitrogen limitation. Binding to AspA was lost in the GlnB(Y51F) mutant of the uridylylation site. AspA, therefore, represents a new type of GlnB target that binds GlnB (with ATP and 2-oxoglutarate), or GlnB-UMP (with or without effectors), and both situations stimulate AspA deamination activity. Thus, AspA represents the central enzyme for nitrogen assimilation from L-aspartate, and AspA is integrated into the nitrogen assimilation network by the regulator GlnB.
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Affiliation(s)
- Christopher Schubert
- Microbiology and Wine Research, Institute for Molecular Physiology, Johannes Gutenberg-University Mainz, Mainz, Germany
| | - Sandra Zedler
- Microbiology and Wine Research, Institute for Molecular Physiology, Johannes Gutenberg-University Mainz, Mainz, Germany
| | - Alexander Strecker
- Microbiology and Wine Research, Institute for Molecular Physiology, Johannes Gutenberg-University Mainz, Mainz, Germany
| | - Gottfried Unden
- Microbiology and Wine Research, Institute for Molecular Physiology, Johannes Gutenberg-University Mainz, Mainz, Germany
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Schubert C, Dabbagh A, Classen J, Tzvi E. P195 Cerebellar alpha transcranial alternating current stimulation (tACS) leads to motor learning deficits and modulation of oscillatory alpha power. Clin Neurophysiol 2020. [DOI: 10.1016/j.clinph.2019.12.306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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13
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Tzvi-Minker E, Schubert C, Zoubir M, Krämer U, Classen J. FV 33 The role of theta and mu oscillations in online explicit motor sequence learning. Clin Neurophysiol 2019. [DOI: 10.1016/j.clinph.2019.04.639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Wissig J, Grischin J, Bassler J, Schubert C, Friedrich T, Bähre H, Schultz JE, Unden G. CyaC, a redox‐regulated adenylate cyclase ofSinorhizobium melilotiwith a quinone responsive diheme‐B membrane anchor domain. Mol Microbiol 2019; 112:16-28. [DOI: 10.1111/mmi.14251] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/19/2019] [Indexed: 12/28/2022]
Affiliation(s)
- Juliane Wissig
- Microbiology and Wine Research, Institute for Molecular Physiology Johannes Gutenberg‐University of Mainz Becherweg 1555099Mainz Germany
| | - Julia Grischin
- Max‐Planck‐Institut für Entwicklungsbiologie, Abt. Proteinevolution Max‐Planck‐Ring 572076Tübingen Germany
| | - Jens Bassler
- Max‐Planck‐Institut für Entwicklungsbiologie, Abt. Proteinevolution Max‐Planck‐Ring 572076Tübingen Germany
| | - Christopher Schubert
- Microbiology and Wine Research, Institute for Molecular Physiology Johannes Gutenberg‐University of Mainz Becherweg 1555099Mainz Germany
| | | | - Heike Bähre
- Medizinische Hochschule Hannover Hannover Germany
| | - Joachim E. Schultz
- Pharmazeutisches Institut der Universität Tübingen Auf der Morgenstelle 872076Tübingen Germany
| | - Gottfried Unden
- Microbiology and Wine Research, Institute for Molecular Physiology Johannes Gutenberg‐University of Mainz Becherweg 1555099Mainz Germany
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Strecker A, Schubert C, Zedler S, Steinmetz P, Unden G. DcuA of aerobically grownEscherichia coliserves as a nitrogen shuttle (L‐aspartate/fumarate) for nitrogen uptake. Mol Microbiol 2018; 109:801-811. [DOI: 10.1111/mmi.14074] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 06/27/2018] [Accepted: 07/02/2018] [Indexed: 11/28/2022]
Affiliation(s)
- Alexander Strecker
- Microbiology and Wine Research, Institute of Molecular Physiology (IMP) Johannes Gutenberg‐University Mainz Mainz 55099Germany
| | - Christopher Schubert
- Microbiology and Wine Research, Institute of Molecular Physiology (IMP) Johannes Gutenberg‐University Mainz Mainz 55099Germany
| | - Sandra Zedler
- Microbiology and Wine Research, Institute of Molecular Physiology (IMP) Johannes Gutenberg‐University Mainz Mainz 55099Germany
| | - Philipp Steinmetz
- Microbiology and Wine Research, Institute of Molecular Physiology (IMP) Johannes Gutenberg‐University Mainz Mainz 55099Germany
| | - Gottfried Unden
- Microbiology and Wine Research, Institute of Molecular Physiology (IMP) Johannes Gutenberg‐University Mainz Mainz 55099Germany
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Hürtgen G, Von Werder S, Berneking V, Gester K, Winz O, Hallen P, Büther F, Schubert C, Escobar-Corral N, Hatakeyama Zeidler J, Arenbeck H, Disselhorst-Klug C, Stahl A, Eble M. EP-1619: Determination of Lung Tumour Motion from PET Raw Data used for Accelerometer Based Motion Prediction. Radiother Oncol 2017. [DOI: 10.1016/s0167-8140(17)32054-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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17
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Abend S, Gebbe M, Gersemann M, Ahlers H, Müntinga H, Giese E, Gaaloul N, Schubert C, Lämmerzahl C, Ertmer W, Schleich WP, Rasel EM. Atom-Chip Fountain Gravimeter. Phys Rev Lett 2016; 117:203003. [PMID: 27886486 DOI: 10.1103/physrevlett.117.203003] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2016] [Indexed: 06/06/2023]
Abstract
We demonstrate a quantum gravimeter by combining the advantages of an atom chip for the generation, delta-kick collimation, and coherent manipulation of freely falling Bose-Einstein condensates (BECs) with an innovative launch mechanism based on Bloch oscillations and double Bragg diffraction. Our high-contrast BEC interferometer realizes tens of milliseconds of free fall in a volume as little as a one centimeter cube and paves the way for measurements with sub-μGal accuracies in miniaturized, robust devices.
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Affiliation(s)
- S Abend
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - M Gebbe
- ZARM, Universität Bremen, Am Fallturm, D-28359 Bremen, Germany
| | - M Gersemann
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - H Ahlers
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - H Müntinga
- ZARM, Universität Bremen, Am Fallturm, D-28359 Bremen, Germany
| | - E Giese
- Institut für Quantenphysik and Center for Integrated Quantum Science and Technology (IQST), Universität Ulm, Albert-Einstein-Allee 11, D-89081 Ulm, Germany
- Department of Physics and Max Planck Centre for Extreme and Quantum Photonics, University of Ottawa, 25 Templeton Street, Ottawa, ON K1N 6N5, Canada
| | - N Gaaloul
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - C Schubert
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - C Lämmerzahl
- ZARM, Universität Bremen, Am Fallturm, D-28359 Bremen, Germany
| | - W Ertmer
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - W P Schleich
- Institut für Quantenphysik and Center for Integrated Quantum Science and Technology (IQST), Universität Ulm, Albert-Einstein-Allee 11, D-89081 Ulm, Germany
- Texas A&M University Institute for Advanced Study (TIAS), Institute for Quantum Science and Engineering (IQSE) and Department of Physics and Astronomy, Texas A&M University, College Station, Texas 77843-4242, USA
| | - E M Rasel
- Institut für Quantenoptik, Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
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18
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Schwartz C, Hilbert S, Schubert C, Schlegl S, Freyer T, Löwe B, Osen B, Voderholzer U. Change Factors in the Process of Cognitive-Behavioural Therapy for Obsessive-Compulsive Disorder. Clin Psychol Psychother 2016; 24:785-792. [DOI: 10.1002/cpp.2045] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2016] [Revised: 09/12/2016] [Accepted: 09/12/2016] [Indexed: 11/08/2022]
Affiliation(s)
- C. Schwartz
- Department of Psychiatry and Psychotherapy; University Hospital of Munich (LMU); Munich Germany
| | - S. Hilbert
- Department of Methodology and Diagnostics; University of Munich (LMU); Munich Germany
| | | | - S. Schlegl
- Department of Psychiatry and Psychotherapy; University Hospital of Munich (LMU); Munich Germany
| | - T. Freyer
- Department of Psychiatry and Psychotherapy; University of Freiburg; Freiburg Germany
| | - B. Löwe
- Department of Psychosomatic Medicine and Psychotherapy; University of Hamburg; Hamburg Germany
- Schön Clinic Hamburg Eilbek; Hamburg Germany
| | - B. Osen
- Schön Clinic Bad Bramstedt; Bad Bramstedt Germany
| | - U. Voderholzer
- Schoen Clinic Roseneck; Prien Germany
- Department of Psychiatry and Psychotherapy; University of Freiburg; Freiburg Germany
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19
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Schubert C. SP0202 Psychoneuroimmunology: from Psyche To Immune Activity and Back. Ann Rheum Dis 2016. [DOI: 10.1136/annrheumdis-2016-eular.6433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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20
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Schubert C. A Bouquet for Oocyte Polarity. Biol Reprod 2016. [DOI: 10.1095/biolreprod.116.139105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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Hürtgen G, Von Werder S, Wilkmann C, Winz O, Schubert C, Escobar-Corral N, Klotz J, Disselhorst-Klug C, Stahl A, Eble M. EP-1743: Analysis of the deviation of lung tumour displacement caused by different breathing patterns. Radiother Oncol 2016. [DOI: 10.1016/s0167-8140(16)32994-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Van der Meer S, Vanneste B, Van Elmpt W, Schubert C, Pinkawa M, Lambin P. EP-1368: A novel decision support method to estimate the value of a rectum spacer: ‘Virtual Rectum Spacer’. Radiother Oncol 2016. [DOI: 10.1016/s0167-8140(16)32618-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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24
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Willems P, Philipp A, Berweiler I, Langbein C, Weber A, Schubert C, Maier P, Hetzel M. Weaning am RKK-Stuttgart. Grunderkrankungen,Weaningdauer, Ergebnisse. Pneumologie 2016. [DOI: 10.1055/s-0036-1572101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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van der Meer S, Vanneste B, Herfs D, van Elmpt W, Schubert C, Pinkawa M, Lambin P. A novel method to predict a priori the toxicity reduction of a prostate-rectum spacer: Virtual Rectum Spacer. Radiother Oncol 2016. [DOI: 10.1016/s0167-8140(16)30218-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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26
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Schubert C. Core Component of Preeclampsia. Biol Reprod 2015. [DOI: 10.1095/biolreprod.115.138321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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27
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Schubert C. Brain Circuit Compels Maternal Behavior Through Oxytocin. Biol Reprod 2015. [DOI: 10.1095/biolreprod.115.135525] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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Schemionek M, Herrmann O, Reher MM, Chatain N, Schubert C, Costa IG, Hänzelmann S, Gusmao EG, Kintsler S, Braunschweig T, Hamilton A, Helgason GV, Copland M, Schwab A, Müller-Tidow C, Li S, Holyoake TL, Brümmendorf TH, Koschmieder S. Mtss1 is a critical epigenetically regulated tumor suppressor in CML. Leukemia 2015; 30:823-32. [DOI: 10.1038/leu.2015.329] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2015] [Revised: 10/23/2015] [Accepted: 11/16/2015] [Indexed: 12/22/2022]
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Schubert C. Chaperone Keeps the Silence. Biol Reprod 2015. [DOI: 10.1095/biolreprod.115.137182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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30
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Schubert C. Macrophages Make the Man-in Mice. Biol Reprod 2015. [DOI: 10.1095/biolreprod.115.134809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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Schubert C. Girls: Find a Mate Like Your Mother!?! Biol Reprod 2015. [DOI: 10.1095/biolreprod.115.134163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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Schubert C. Sex Differences Without Sex Chromosomes. Biol Reprod 2015. [DOI: 10.1095/biolreprod.115.133074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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35
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Schubert C. Mitochondrial DNA, Age, and the "Good" Embryo. Biol Reprod 2015. [DOI: 10.1095/biolreprod.115.132449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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36
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Schubert C. Powering Pluripotency. Biol Reprod 2015. [DOI: 10.1095/biolreprod.115.132746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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37
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Schubert C. Hormones Permanently Alter DNA During Sexual Maturity, Pregnancy. Biol Reprod 2015. [DOI: 10.1095/biolreprod.115.131623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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Phillips PJ, Schubert C, Argue D, Fisher I, Furlong ET, Foreman W, Gray J, Chalmers A. Concentrations of hormones, pharmaceuticals and other micropollutants in groundwater affected by septic systems in New England and New York. Sci Total Environ 2015; 512-513:43-54. [PMID: 25613769 DOI: 10.1016/j.scitotenv.2014.12.067] [Citation(s) in RCA: 66] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2014] [Revised: 12/09/2014] [Accepted: 12/09/2014] [Indexed: 06/04/2023]
Abstract
Septic-system discharges can be an important source of micropollutants (including pharmaceuticals and endocrine active compounds) to adjacent groundwater and surface water systems. Groundwater samples were collected from well networks tapping glacial till in New England (NE) and sandy surficial aquifer New York (NY) during one sampling round in 2011. The NE network assesses the effect of a single large septic system that receives discharge from an extended health care facility for the elderly. The NY network assesses the effect of many small septic systems used seasonally on a densely populated portion of Fire Island. The data collected from these two networks indicate that hydrogeologic and demographic factors affect micropollutant concentrations in these systems. The highest micropollutant concentrations from the NE network were present in samples collected from below the leach beds and in a well downgradient of the leach beds. Total concentrations for personal care/domestic use compounds, pharmaceutical compounds and plasticizer compounds generally ranged from 1 to over 20 μg/L in the NE network samples. High tris(2-butoxyethyl phosphate) plasticizer concentrations in wells beneath and downgradient of the leach beds (>20 μg/L) may reflect the presence of this compound in cleaning agents at the extended health-care facility. The highest micropollutant concentrations for the NY network were present in the shoreline wells and reflect groundwater that is most affected by septic system discharges. One of the shoreline wells had personal care/domestic use, pharmaceutical, and plasticizer concentrations ranging from 0.4 to 5.7 μg/L. Estradiol equivalency quotient concentrations were also highest in a shoreline well sample (3.1 ng/L). Most micropollutant concentrations increase with increasing specific conductance and total nitrogen concentrations for shoreline well samples. These findings suggest that septic systems serving institutional settings and densely populated areas in coastal settings may be locally important sources of micropollutants to adjacent aquifer and marine systems.
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Affiliation(s)
| | | | - D Argue
- US Geological Survey, Pembroke, NH, USA
| | - I Fisher
- US Geological Survey, Coram, NY, USA
| | | | - W Foreman
- US Geological Survey, Denver, CO, USA
| | - J Gray
- US Geological Survey, Denver, CO, USA
| | - A Chalmers
- US Geological Survey, Montpelier, VT, USA
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Schubert C. Estrogens Addle Male Meiotic Cells. Biol Reprod 2015. [DOI: 10.1095/biolreprod.115.128702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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Vanneste B, Hoffmann A, Schubert C, Pinkawa M, Lambin P. EP-1233: Model-based prediction of rectal toxicity reduction in prostate cancer IMRT with hydrogel rectum spacer. Radiother Oncol 2015. [DOI: 10.1016/s0167-8140(15)41225-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Jungheim M, Schubert C, Miller S, Ptok M. [Normative Data of Pharyngeal and Upper Esophageal Sphincter High Resolution Manometry]. Laryngorhinootologie 2015; 94:601-8. [PMID: 25739072 DOI: 10.1055/s-0034-1395532] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
BACKGROUND High resolution manometry (HRM) can provide information about the muscular contraction of the pharynx and the upper esophageal sphincter (UES) and represents an important tool in the diagnostics of dysphagia. To compare the results of swallowing studies interindividually and to identify pathological swallows, normative data are necessary. Normative data for the use of an HRM-probe with a large diameter has already been published. As previously has been shown these probes can influence the normal contraction of the pharynx and the UES. In this study comprehensive normal values are presented for small HRM-probes in diameter (2 mm), that only minimally affect pharyngeal and UES contractions. METHOD 29 healthy volunteers underwent pharyngeal and upper esophageal HRM. All subjects performed 10 water swallows of 2 ml in an upright position. Pressure and time dependent parameters of the velopharyngeal region, the tongue base and the UES have been evaluated. Mean and median values and different percentile ranges were calculated. RESULTS The normative values for the key parameters were (mean±SD): maximum velopharyngeal pressure 269.9±113.1 mmHg, maximum tongue base pressure 278±93.6 mmHg, maximum UES pressure 205.8±64.0 mmHg, UES resting pressure 42.5±18.7 mmHg and relaxation time of the UES 681.6±86.8 ms. Further parameters have been measured. CONCLUSION Time dependent values are comparable to those already published. Especially in the UES lower pressures can be measured when a small HRM-probe is used. The normative data established in this study might help to distinguish pathological from physiological swallows using HRM.
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Affiliation(s)
- M Jungheim
- Klinik und Poliklinik für Phoniatrie und Pädaudiologie, Medizinische Hochschule Hannover, Hannover
| | - C Schubert
- Klinik und Poliklinik für Phoniatrie und Pädaudiologie, Medizinische Hochschule Hannover, Hannover
| | - S Miller
- Klinik und Poliklinik für Phoniatrie und Pädaudiologie, Medizinische Hochschule Hannover, Hannover
| | - M Ptok
- Klinik und Poliklinik für Phoniatrie und Pädaudiologie, Medizinische Hochschule Hannover, Hannover
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45
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Berg P, Abend S, Tackmann G, Schubert C, Giese E, Schleich WP, Narducci FA, Ertmer W, Rasel EM. Composite-light-pulse technique for high-precision atom interferometry. Phys Rev Lett 2015; 114:063002. [PMID: 25723216 DOI: 10.1103/physrevlett.114.063002] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Indexed: 06/04/2023]
Abstract
We realize beam splitters and mirrors for atom waves by employing a sequence of light pulses rather than individual ones. In this way we can tailor atom interferometers with improved sensitivity and accuracy. We demonstrate our method of composite pulses by creating a symmetric matter-wave interferometer which combines the advantages of conventional Bragg- and Raman-type concepts. This feature leads to an interferometer with a high immunity to technical noise allowing us to devise a large-area Sagnac gyroscope yielding a phase shift of 6.5 rad due to the Earth's rotation. With this device we achieve a rotation rate precision of 120 nrad s(-1) Hz(-1/2) and determine the Earth's rotation rate with a relative uncertainty of 1.2%.
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Affiliation(s)
- P Berg
- Institut für Quantenoptik and Centre for Quantum Engineering and Space-Time Research (QUEST), Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - S Abend
- Institut für Quantenoptik and Centre for Quantum Engineering and Space-Time Research (QUEST), Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - G Tackmann
- Institut für Quantenoptik and Centre for Quantum Engineering and Space-Time Research (QUEST), Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - C Schubert
- Institut für Quantenoptik and Centre for Quantum Engineering and Space-Time Research (QUEST), Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - E Giese
- Institut für Quantenphysik and Center for Integrated Quantum Science and Technology (IQST), Universität Ulm, Albert-Einstein-Allee 11, D-89081 Ulm, Germany
| | - W P Schleich
- Institut für Quantenphysik and Center for Integrated Quantum Science and Technology (IQST), Universität Ulm, Albert-Einstein-Allee 11, D-89081 Ulm, Germany and Texas A&M University Institute for Advanced Study (TIAS), Institute for Quantum Science and Engineering (IQSE), and Department of Physics and Astronomy, Texas A&M University, College Station, Texas 77843-4242, USA
| | - F A Narducci
- Naval Air Systems Command, EO Sensors Division, Patuxent River, Maryland 20670, USA
| | - W Ertmer
- Institut für Quantenoptik and Centre for Quantum Engineering and Space-Time Research (QUEST), Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - E M Rasel
- Institut für Quantenoptik and Centre for Quantum Engineering and Space-Time Research (QUEST), Leibniz Universität Hannover, Welfengarten 1, D-30167 Hannover, Germany
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Abstract
We highlight recent progress in the field of electron transport through molecular bridges as integrative parts of electron donor–bridge–acceptor conjugates.
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Affiliation(s)
- C. Schubert
- Department of Chemistry and Pharmacy & Interdisciplinary Center for Molecular Materials (ICMM)
- Friedrich-Alexander-Universität Erlangen-Nürnberg
- 91058 Erlangen
- Germany
| | - J. T. Margraf
- Computer-Chemie-Centrum
- Department of Chemistry and Pharmacy & Interdisciplinary Center for Molecular Materials (ICMM)
- Friedrich-Alexander-Universität Erlangen-Nürnberg
- 91052 Erlangen
- Germany
| | - T. Clark
- Computer-Chemie-Centrum
- Department of Chemistry and Pharmacy & Interdisciplinary Center for Molecular Materials (ICMM)
- Friedrich-Alexander-Universität Erlangen-Nürnberg
- 91052 Erlangen
- Germany
| | - D. M. Guldi
- Department of Chemistry and Pharmacy & Interdisciplinary Center for Molecular Materials (ICMM)
- Friedrich-Alexander-Universität Erlangen-Nürnberg
- 91058 Erlangen
- Germany
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Schubert C. Scaffold for Splicing. Biol Reprod 2014. [DOI: 10.1095/biolreprod.114.127720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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Bignan G, Alexander R, Bischoff J, Connolly P, Cummings M, de Breucker S, Esser N, Fraiponts E, Gilissen R, Grasberger B, Janssens B, Lu T, Ludovici D, Meerpoel L, Meyer C, Parker M, Peeters D, Rocaboy C, Schubert C, Smans K. 430 Design and structure–activity relationships of highly potent and bioavailable imidazolinone FASN KR domain inhibitors. Eur J Cancer 2014. [DOI: 10.1016/s0959-8049(14)70556-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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