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Errington TM, Denis A, Allison AB, Araiza R, Aza-Blanc P, Bower LR, Campos J, Chu H, Denson S, Donham C, Harr K, Haven B, Iorns E, Kwok J, McDonald E, Pelech S, Perfito N, Pike A, Sampey D, Settles M, Scott DA, Sharma V, Tolentino T, Trinh A, Tsui R, Willis B, Wood J, Young L. Experiments from unfinished Registered Reports in the Reproducibility Project: Cancer Biology. eLife 2021; 10:73430. [PMID: 34874009 PMCID: PMC8651290 DOI: 10.7554/elife.73430] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 11/14/2021] [Indexed: 12/16/2022] Open
Abstract
As part of the Reproducibility Project: Cancer Biology, we published Registered Reports that described how we intended to replicate selected experiments from 29 high-impact preclinical cancer biology papers published between 2010 and 2012. Replication experiments were completed and Replication Studies reporting the results were submitted for 18 papers, of which 17 were accepted and published by eLife with the rejected paper posted as a preprint. Here, we report the status and outcomes obtained for the remaining 11 papers. Four papers initiated experimental work but were stopped without any experimental outcomes. Two papers resulted in incomplete outcomes due to unanticipated challenges when conducting the experiments. For the remaining five papers only some of the experiments were completed with the other experiments incomplete due to mundane technical or unanticipated methodological challenges. The experiments from these papers, along with the other experiments attempted as part of the Reproducibility Project: Cancer Biology, provides evidence about the challenges of repeating preclinical cancer biology experiments and the replicability of the completed experiments.
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Affiliation(s)
| | | | - Anne B Allison
- Piedmont Virginia Community College, Charlottesville, United States
| | - Renee Araiza
- University of California, Davis, Davis, United States
| | | | | | | | - Heidi Chu
- Applied Biological Materials, Richmond, Canada
| | - Sarah Denson
- University of California, Davis, Davis, United States
| | | | - Kaitlyn Harr
- University of Virginia, Charlottesville, United States
| | | | | | - Jennie Kwok
- Applied Biological Materials, Richmond, Canada
| | - Elysia McDonald
- Drexel University College of Medicine, Philadelphia, United States
| | - Steven Pelech
- Kinexus Bioinformatics, Vancouver, Canada.,University of British Columbia, Vancouver, United States
| | | | - Amanda Pike
- Applied Biological Materials, Richmond, Canada
| | | | | | - David A Scott
- Sanford Burnham Prebys Medical Discovery Institute, La Jolla, United States
| | | | | | | | | | | | - Joshua Wood
- University of California, Davis, Davis, United States
| | - Lisa Young
- Applied Biological Materials, Richmond, Canada
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2
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Raleigh MD, Beltraminelli N, Fallot S, LeSage MG, Saykao A, Pentel PR, Fuller S, Thisted T, Biesova Z, Horrigan S, Sampey D, Zhou B, Kalnik MW. Attenuating nicotine's effects with high affinity human anti-nicotine monoclonal antibodies. PLoS One 2021; 16:e0254247. [PMID: 34329335 PMCID: PMC8323890 DOI: 10.1371/journal.pone.0254247] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Accepted: 06/23/2021] [Indexed: 11/27/2022] Open
Abstract
Use of nicotine-specific monoclonal antibodies (mAbs) to sequester and reduce nicotine distribution to brain has been proposed as a therapeutic approach to treat nicotine addiction (the basis of tobacco use disorder). A series of monoclonal antibodies with high affinity for nicotine (nic•mAbs) was isolated from B-cells of vaccinated smokers. Genes encoding 32 unique nicotine binding antibodies were cloned, and the mAbs expressed and tested by surface plasmon resonance to determine their affinity for S-(–)-nicotine. The highest affinity nic•mAbs had binding affinity constants (KD) between 5 and 67 nM. The 4 highest affinity nic•mAbs were selected to undergo additional secondary screening for antigen-specificity, protein properties (including aggregation and stability), and functional in vivo studies to evaluate their capacity for reducing nicotine distribution to brain in rats. The 2 most potent nic•mAbs in single-dose nicotine pharmacokinetic experiments were further tested in a dose-response in vivo study. The most potent lead, ATI-1013, was selected as the lead candidate based on the results of these studies. Pretreatment with 40 and 80 mg/kg ATI-1013 reduced brain nicotine levels by 56 and 95%, respectively, in a repeated nicotine dosing experiment simulating very heavy smoking. Nicotine self-administration was also significantly reduced in rats treated with ATI-1013. A pilot rat 30-day repeat-dose toxicology study (4x200mg/kg ATI-1013) in the presence of nicotine indicated no drug-related safety concerns. These data provide evidence that ATI-1013 could be a potential therapy for the treatment of nicotine addiction.
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Affiliation(s)
- Michael D. Raleigh
- Hennepin Healthcare Research Institute, Minneapolis, Minnesota, United States of America
- Department of Pharmacology, University of Minnesota, Minneapolis, Minnesota, United States of America
| | | | | | - Mark G. LeSage
- Hennepin Healthcare Research Institute, Minneapolis, Minnesota, United States of America
- Nic•mAb Strategic Alliance, San Diego, California, United States of America
| | - Amy Saykao
- Hennepin Healthcare Research Institute, Minneapolis, Minnesota, United States of America
| | - Paul R. Pentel
- Hennepin Healthcare Research Institute, Minneapolis, Minnesota, United States of America
- Nic•mAb Strategic Alliance, San Diego, California, United States of America
| | - Steve Fuller
- Nic•mAb Strategic Alliance, San Diego, California, United States of America
- Antidote Therapeutics, Inc., Woodbine, Maryland, United States of America
| | - Thomas Thisted
- Nic•mAb Strategic Alliance, San Diego, California, United States of America
- Antidote Therapeutics, Inc., Woodbine, Maryland, United States of America
| | - Zuzanna Biesova
- Antidote Therapeutics, Inc., Woodbine, Maryland, United States of America
| | - Stephen Horrigan
- Noble Life Sciences, Woodbine, Maryland, United States of America
| | - Darryl Sampey
- Nic•mAb Strategic Alliance, San Diego, California, United States of America
- Biofactura, Inc., Frederick, Maryland, United States of America
| | - Bin Zhou
- Nic•mAb Strategic Alliance, San Diego, California, United States of America
- The Scripps Research Institute, La Jolla, California, United States of America
| | - Matthew W. Kalnik
- Nic•mAb Strategic Alliance, San Diego, California, United States of America
- Antidote Therapeutics, Inc., Woodbine, Maryland, United States of America
- * E-mail:
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3
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Mucker EM, Karmali PP, Vega J, Kwilas SA, Wu H, Joselyn M, Ballantyne J, Sampey D, Mukthavaram R, Sullivan E, Chivukula P, Hooper JW. Lipid Nanoparticle Formulation Increases Efficiency of DNA-Vectored Vaccines/Immunoprophylaxis in Animals Including Transchromosomic Bovines. Sci Rep 2020; 10:8764. [PMID: 32472093 PMCID: PMC7260227 DOI: 10.1038/s41598-020-65059-0] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 04/16/2020] [Indexed: 12/19/2022] Open
Abstract
The use of nucleic acid as a drug substance for vaccines and other gene-based medicines continues to evolve. Here, we have used a technology originally developed for mRNA in vivo delivery to enhance the immunogenicity of DNA vaccines. We demonstrate that neutralizing antibodies produced in rabbits and nonhuman primates injected with lipid nanoparticle (LNP)-formulated Andes virus or Zika virus DNA vaccines are elevated over unformulated vaccine. Using a plasmid encoding an anti-poxvirus monoclonal antibody (as a reporter of protein expression), we showed that improved immunogenicity is likely due to increased in vivo DNA delivery, resulting in more target protein. Specifically, after four days, up to 30 ng/mL of functional monoclonal antibody were detected in the serum of rabbits injected with the LNP-formulated DNA. We pragmatically applied the technology to the production of human neutralizing antibodies in a transchromosomic (Tc) bovine for use as a passive immunoprophylactic. Production of neutralizing antibody was increased by >10-fold while utilizing 10 times less DNA in the Tc bovine. This work provides a proof-of-concept that LNP formulation of DNA vaccines can be used to produce more potent active vaccines, passive countermeasures (e.g., Tc bovine), and as a means to produce more potent DNA-launched immunotherapies.
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Affiliation(s)
- Eric M Mucker
- US Army Medical Research Institute for Infectious Disease, Fort Detrick, MD, USA
| | | | - Jerel Vega
- Arcturus Therapeutics, San Diego, CA, USA
| | - Steven A Kwilas
- US Army Medical Research Institute for Infectious Disease, Fort Detrick, MD, USA
| | - Hua Wu
- SAB Biotherapeutics, Sioux Falls, SD, USA
| | - Matthew Joselyn
- US Army Medical Research Institute for Infectious Disease, Fort Detrick, MD, USA
| | | | | | | | | | | | - Jay W Hooper
- US Army Medical Research Institute for Infectious Disease, Fort Detrick, MD, USA.
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Mucker EM, Wollen-Roberts SE, Kimmel A, Shamblin J, Sampey D, Hooper JW. Intranasal monkeypox marmoset model: Prophylactic antibody treatment provides benefit against severe monkeypox virus disease. PLoS Negl Trop Dis 2018; 12:e0006581. [PMID: 29927927 PMCID: PMC6029809 DOI: 10.1371/journal.pntd.0006581] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2018] [Revised: 07/03/2018] [Accepted: 06/04/2018] [Indexed: 02/08/2023] Open
Abstract
Concerns regarding outbreaks of human monkeypox or the potential reintroduction of smallpox into an immunological naïve population have prompted the development of animal models and countermeasures. Here we present a marmoset model of monkeypox and smallpox disease utilizing a relevant poxvirus via a natural exposure route. We found that 1000 plaque forming units (PFU) of Monkeypox virus was sufficient to recapitulate smallpox disease, to include an incubation period of approximately 13 days, followed by the onset of rash, and death between 15 and 17 days. Temporally accurate manifestation of viremia and oral shedding were also features. The number of lesions ranged from no lesions to 299, the most reported in a marmoset exposed to a poxvirus. To both evaluate the efficacy of our antibodies and the applicability of the model system, marmosets were prophylactically treated with two monoclonal antibodies, c7D11 and c8A. Of three marmosets, two were completely free of disease and a single marmoset died 8 days after the mock (n = 1) or PBS control(s) (n = 2). Evaluation of the serum levels of the three animals provided a possible explanation to the animal succumbing to disease. Interestingly, more females had lesions (and a greater number of lesions) and lower viral burden (viremia and oral shedding) than males in our studies, suggesting a possible gender effect.
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Affiliation(s)
- Eric M. Mucker
- United States Army Medical Research Institute of Infectious Diseases, Virology Division, Fort Detrick Maryland, United States of America
| | - Suzanne E. Wollen-Roberts
- United States Army Medical Research Institute of Infectious Diseases, Virology Division, Fort Detrick Maryland, United States of America
| | - Adrienne Kimmel
- United States Army Medical Research Institute of Infectious Diseases, Virology Division, Fort Detrick Maryland, United States of America
| | - Josh Shamblin
- United States Army Medical Research Institute of Infectious Diseases, Virology Division, Fort Detrick Maryland, United States of America
| | - Darryl Sampey
- BioFactura, Inc, Frederick, Maryland, United States of America
| | - Jay W. Hooper
- United States Army Medical Research Institute of Infectious Diseases, Virology Division, Fort Detrick Maryland, United States of America
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5
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Sampey D, Courville P, Acree D, Hausfeld J, Bentley WE. Enhanced expression of a biosimilar monoclonal antibody with a novel NS0 platform. Biotechnol Prog 2018; 34:455-462. [DOI: 10.1002/btpr.2596] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2017] [Revised: 12/18/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Darryl Sampey
- BioFactura, Inc., 8435 Progress Drive, Suite Z; Frederick MD 21701
| | - Pascal Courville
- BioFactura, Inc., 8435 Progress Drive, Suite Z; Frederick MD 21701
| | - David Acree
- BioFactura, Inc., 8435 Progress Drive, Suite Z; Frederick MD 21701
| | - Jeffrey Hausfeld
- BioFactura, Inc., 8435 Progress Drive, Suite Z; Frederick MD 21701
| | - William E. Bentley
- Maryland Center of Excellence in Regulatory Science and Innovation (CERSI), University of Maryland, College Park; MD 20742
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Horrigan SK, Courville P, Sampey D, Zhou F, Cai S. Replication Study: Melanoma genome sequencing reveals frequent PREX2 mutations. eLife 2017; 6. [PMID: 28100394 PMCID: PMC5245968 DOI: 10.7554/elife.21634] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Accepted: 11/21/2016] [Indexed: 12/30/2022] Open
Abstract
In 2015, as part of the Reproducibility Project: Cancer Biology, we published a Registered Report (Chroscinski et al., 2014) that described how we intended to replicate selected experiments from the paper "Melanoma genome sequencing reveals frequent PREX2 mutations" (Berger et al., 2012). Here we report the results of those experiments. We regenerated cells stably expressing ectopic wild-type and mutant phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 (PREX2) using the same immortalized human NRASG12D melanocytes as the original study. Evaluation of PREX2 expression in these newly generated stable cells revealed varying levels of expression among the PREX2 isoforms, which was also observed in the stable cells made in the original study (Figure S6A; Berger et al., 2012). Additionally, ectopically expressed PREX2 was found to be at least 5 times above endogenous PREX2 expression. The monitoring of tumor formation of these stable cells in vivo resulted in no statistically significant difference in tumor-free survival driven by PREX2 variants, whereas the original study reported that these PREX2 mutations increased the rate of tumor incidence compared to controls (Figure 3B and S6B; Berger et al., 2012). Surprisingly, the median tumor-free survival was 1 week in this replication attempt, while 70% of the control mice were reported to be tumor-free after 9 weeks in the original study. The rapid tumor onset observed in this replication attempt, compared to the original study, makes the detection of accelerated tumor growth in PREX2 expressing NRASG12D melanocytes extremely difficult. Finally, we report meta-analyses for each result.
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Chroscinski D, Sampey D, Maherali N. Registered report: tumour vascularization via endothelial differentiation of glioblastoma stem-like cells. eLife 2015; 4. [PMID: 25714925 PMCID: PMC4383241 DOI: 10.7554/elife.04363] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2014] [Accepted: 01/27/2015] [Indexed: 12/22/2022] Open
Abstract
The Reproducibility Project: Cancer Biology seeks to address growing
concerns about reproducibility in scientific research by conducting replications of
50 papers in the field of cancer biology published between 2010 and 2012. This
Registered report describes the proposed replication plan of key experiments from
‘Tumour vascularization via endothelial differentiation of glioblastoma
stem-like cells’ by Ricci-Vitiani and colleagues, published in
Nature in 2010 (Ricci-Vitiani
et al., 2010). The experiments that will be replicated are those reported
in Figure 4B and Supplementary Figure 10B (Ricci-Vitiani et al., 2010), which demonstrate that glioblastoma stem-like
cells can derive into endothelial cells, and can be selectively ablated to reduce
tumor progression in vivo, and Supplementary Figures S10C and S10D (Ricci-Vitiani et al., 2010), which demonstrate
that fully differentiated glioblastoma cells cannot form functionally relevant
endothelium. The Reproducibility Project: Cancer Biology is a collaboration between
the Center for Open Science and Science Exchange, and the
results of the replications will be published by eLife. DOI:http://dx.doi.org/10.7554/eLife.04363.001
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Affiliation(s)
| | | | - Nimet Maherali
- Harvard Stem Cell Institute, Cambridge, Massachusetts, United States
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8
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Chroscinski D, Sampey D, Hewitt A. Registered report: Melanoma genome sequencing reveals frequent PREX2 mutations. eLife 2014; 3. [PMID: 25490935 PMCID: PMC4270141 DOI: 10.7554/elife.04180] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2014] [Accepted: 11/11/2014] [Indexed: 12/23/2022] Open
Abstract
The Reproducibility Project: Cancer
Biology seeks to address growing concerns about reproducibility in
scientific research by conducting replications of 50 papers in the field of cancer
biology published between 2010 and 2012. This Registered Report describes the
proposed replication plan of key experiments from ‘Melanoma genome sequencing
reveals frequent PREX2 mutations’ by Berger and colleagues,
published in Nature in 2012 (Berger
et al., 2012). The key experiments that will be replicated are those
reported in Figure 3B and Supplementary Figure S6. In these experiments, Berger and
colleagues show that somatic PREX2 mutations identified through
whole-genome sequencing of human melanoma can contribute to enhanced lethality of
tumor xenografts in nude mice (Figure 3B, S6B, and S6C; Berger et al., 2012). The Reproducibility Project: Cancer
Biology is a collaboration between the Center for Open Science
and Science Exchange, and the
results of the replications will be published by eLife. DOI:http://dx.doi.org/10.7554/eLife.04180.001
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Affiliation(s)
| | | | - Alex Hewitt
- Department of Clinical Genetics, University of Melbourne, Melbourne, Australia
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9
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Terrell JL, Gordonov T, Cheng Y, Wu HC, Sampey D, Luo X, Tsao CY, Ghodssi R, Rubloff GW, Payne GF, Bentley WE. Integrated biofabrication for electro-addressed in-film bioprocessing. Biotechnol J 2012; 7:428-39. [DOI: 10.1002/biot.201100181] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2011] [Revised: 11/14/2011] [Accepted: 12/22/2011] [Indexed: 01/17/2023]
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10
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Gwinn W, Zhang M, Mon S, Sampey D, Zukauskas D, Kassebaum C, Zmuda JF, Tsai A, Laird MW. Scalable purification of Bacillus anthracis protective antigen from Escherichia coli. Protein Expr Purif 2006; 45:30-6. [PMID: 15935696 DOI: 10.1016/j.pep.2005.04.009] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2005] [Revised: 04/20/2005] [Accepted: 04/20/2005] [Indexed: 10/25/2022]
Abstract
The anthrax toxin consists of three proteins, protective antigen (PA), lethal factor, and edema factor that are produced by the Gram-positive bacterium, Bacillus anthracis. Current vaccines against anthrax use PA as their primary component. In this study, we developed a scalable process to produce and purify multi-gram quantities of highly pure, recombinant PA (rPA) from Escherichia coli. The rPA protein was produced in a 50-L fermentor and purified to >99% purity using anion-exchange, hydrophobic interaction, and hydroxyapatite chromatography. The final yield of purified rPA from medium cell density fermentations resulted in approximately 2.7 g of rPA per kg of cell paste (approximately 270 mg/L) of highly pure, biologically active rPA protein. The results presented here exhibit the ability to generate multi-gram quantities of rPA from E. coli that may be used for the development of new anthrax vaccines and anthrax therapeutics.
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Affiliation(s)
- William Gwinn
- Human Genome Sciences, Inc., Rockville, MD 20850, USA
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