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Otegbayo B, Oluyinka O, Tanimola AR, Bisi F, Ayomide A, Tomilola B, Madu T, Okoye B, Chijioke U, Ofoeze M, Alamu EO, Adesokan M, Ayetigbo O, Bouniol A, DJibril-Mousa I, Adinsi L, Akissoe N, Cornet D, Agre P, Asfaw A, Obidiegwu J, Maziya-Dixon B. Food quality profile of pounded yam and implications for yam breeding. J Sci Food Agric 2024; 104:4635-4651. [PMID: 37439058 DOI: 10.1002/jsfa.12835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Revised: 05/27/2023] [Accepted: 07/13/2023] [Indexed: 07/14/2023]
Abstract
BACKGROUND Assessment of the key preferred quality traits in pounded yam, a popularly consumed yam food product in West Africa, is often done through sensory evaluation. Such assessment is time-consuming and results may be biased. Therefore, there is a need to develop objective, high-throughput methods to predict the quality of consumer-preferred traits in pounded yam. This study focused on how key quality traits in pounded yam proposed to yam breeders were determined, measured by biophysical and biochemical methods, in order to shorten the breeding selection cycle through adoption of these methods by breeders. RESULTS Consumer tests and sensory quantitative descriptive analysis (QDA) validated that preferred priority quality traits in pounded yam were related to textural quality (smooth, stretchable, moldable, slightly sticky and moderately hard) and color (white, cream or light yellow). There were significant correlations between sensory textural quality attributes cohesiveness/moldability, hardness, and adhesiveness/stickiness, with textural quality measurements from instrumental texture profile analysis (TPA). Color measurement parameters (L*, a*, and b*) with chromameter agreed with that of sensory evaluation and can replace the sensory panel approach. The smoothness (R2 = 1.00), stickiness (R2 = 1.00), stretchability (R2 = 1.00), hardness (R2 = 0.99), and moldability (R2 = 0.53) of pounded yam samples can be predicted by the starch, amylose, and protein contents of yam tubers estimated by near-infrared spectroscopy. CONCLUSION TPA and Hunter colorimeter can be used as medium-high throughput methods to evaluate the textural quality and color of pounded yam in place of the sensory panelists. © 2023 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Bolanle Otegbayo
- Food Science and Technology Program, Bowen University, Iwo, Nigeria
| | | | | | - Fawehinmi Bisi
- Food Science and Technology Program, Bowen University, Iwo, Nigeria
| | - Alamu Ayomide
- Food Science and Technology Program, Bowen University, Iwo, Nigeria
| | - Bolaji Tomilola
- Food Science and Technology Program, Bowen University, Iwo, Nigeria
| | - Tessy Madu
- National Root Crops Research Institute, Umuahia, Nigeria
| | - Benjamin Okoye
- National Root Crops Research Institute, Umuahia, Nigeria
| | - Ugo Chijioke
- National Root Crops Research Institute, Umuahia, Nigeria
| | - Miriam Ofoeze
- National Root Crops Research Institute, Umuahia, Nigeria
| | | | - Michael Adesokan
- International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria
| | | | | | | | - Laurent Adinsi
- Faculté des Sciences Agronomiques, Université d'Abomey-Calavi, Cotonou, Benin
- Ecole des Sciences et Techniques de Conservation et de Transformation des Produits Agricoles, Université Nationale d'Agriculture, Sakété, Benin
| | - Noël Akissoe
- Faculté des Sciences Agronomiques, Université d'Abomey-Calavi, Cotonou, Benin
| | - Denis Cornet
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
- UMR AGAP Institute, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
| | - Parterne Agre
- International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria
| | - Asrat Asfaw
- International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria
| | - Jude Obidiegwu
- National Root Crops Research Institute, Umuahia, Nigeria
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Houngbo ME, Desfontaines L, Irep JL, Dibi KEB, Couchy M, Otegbayo BO, Cornet D. Starch granule size and shape characterization of yam (Dioscorea alata L.) flour using automated image analysis. J Sci Food Agric 2024; 104:4680-4688. [PMID: 37452681 DOI: 10.1002/jsfa.12861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 07/10/2023] [Accepted: 07/15/2023] [Indexed: 07/18/2023]
Abstract
BACKGROUND Roots, tubers and bananas (RTB) play an essential role as staple foods, particularly in Africa. Consumer acceptance for RTB products relies strongly on the functional properties of, which may be affected by the size and shape of its granules. Classically, these are characterized either using manual measurements on microscopic photographs of starch colored with iodine, or using a laser light-scattering granulometer (LLSG). While the former is tedious and only allows the analysis of a small number of granules, the latter only provides limited information on the shape of the starch granule. RESULTS In this study, an open-source solution was developed allowing the automated measurement of the characteristic parameters of the size and shape of yam starch granules by applying thresholding and object identification on microscopic photographs. A random forest (RF) model was used to predict the starch granule shape class. This analysis pipeline was successfully applied to a yam diversity panel of 47 genotypes, leading to the characterization of more than 205 000 starch granules. Comparison between the classical and automated method shows a very strong correlation (R2 = 0.99) and an absence of bias for granule size. The RF model predicted shape class with an accuracy of 83%. With heritability equal to 0.85, the median projected area of the granules varied from 381 to 1115 μm2 and their observed shapes were ellipsoidal, polyhedral, round and triangular. CONCLUSION The results obtained in this study show that the proposed open-source pipeline offers an accurate, robust and discriminating solution for medium-throughput phenotyping of yam starch granule size distribution and shape classification. © 2023 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Mahugnon Ezékiel Houngbo
- CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
- UMR AGAP Institut, Université de Montpellier, CIRAD, INRAE, Institut Agronomie, F-34398 Montpellier, France
| | - Lucienne Desfontaines
- INRAE, UR 1321 ASTRO Agrosystèmes tropicaux. Centre de recherche Antilles-Guyane, Petit-Bourg, France
| | - Jean-Luc Irep
- INRAE, UE 0805 PEYI, Centre de recherche Antilles-Guyane, Petit-Bourg, France
| | | | - Maritza Couchy
- INRAE, UR 1321 ASTRO Agrosystèmes tropicaux. Centre de recherche Antilles-Guyane, Petit-Bourg, France
| | | | - Denis Cornet
- CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
- UMR AGAP Institut, Université de Montpellier, CIRAD, INRAE, Institut Agronomie, F-34398 Montpellier, France
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Houngbo ME, Desfontaines L, Diman JL, Arnau G, Mestres C, Davrieux F, Rouan L, Beurier G, Marie-Magdeleine C, Meghar K, Alamu EO, Otegbayo BO, Cornet D. Convolutional neural network allows amylose content prediction in yam (Dioscorea alata L.) flour using near infrared spectroscopy. J Sci Food Agric 2024; 104:4915-4921. [PMID: 37400424 DOI: 10.1002/jsfa.12825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Revised: 02/07/2023] [Accepted: 07/04/2023] [Indexed: 07/05/2023]
Abstract
BACKGROUND Yam (Dioscorea alata L.) is the staple food of many populations in the intertropical zone, where it is grown. The lack of phenotyping methods for tuber quality has hindered the adoption of new genotypes from breeding programs. Recently, near-infrared spectroscopy (NIRS) has been used as a reliable tool to characterize the chemical composition of the yam tuber. However, it failed to predict the amylose content, although this trait is strongly involved in the quality of the product. RESULTS This study used NIRS to predict the amylose content from 186 yam flour samples. Two calibration methods were developed and validated on an independent dataset: partial least squares (PLS) and convolutional neural networks (CNN). To evaluate final model performances, the coefficient of determination (R2), the root mean square error (RMSE), and the ratio of performance to deviation (RPD) were calculated using predictions on an independent validation dataset. The tested models showed contrasting performances (i.e., R2 of 0.72 and 0.89, RMSE of 1.33 and 0.81, RPD of 2.13 and 3.49 respectively, for the PLS and the CNN model). CONCLUSION According to the quality standard for NIRS model prediction used in food science, the PLS method proved unsuccessful (RPD < 3 and R2 < 0.8) for predicting amylose content from yam flour but the CNN model proved to be reliable and efficient method. With the application of deep learning methods, this study established the proof of concept that amylose content, a key driver of yam textural quality and acceptance, can be predicted accurately using NIRS as a high throughput phenotyping method. © 2023 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Mahugnon Ezékiel Houngbo
- CIRAD, UMR AGAP Institut, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Lucienne Desfontaines
- INRAE, UR 1321 ASTRO Agrosystèmes tropicaux, Centre de recherche Antilles-Guyane, Petit-Bourg, France
| | - Jean-Louis Diman
- INRAE, UE 0805 PEYI, Centre de recherche Antilles-Guyane, Petit-Bourg, France
| | - Gemma Arnau
- CIRAD, UMR AGAP Institut, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | | | - Fabrice Davrieux
- CIRAD, UMR Qualisud, Univ Montpellier, Institut Agro, Avignon Université, Université de La Réunion, Montpellier, France
| | - Lauriane Rouan
- CIRAD, UMR AGAP Institut, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Grégory Beurier
- CIRAD, UMR AGAP Institut, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Carine Marie-Magdeleine
- INRAE, UR 0143 URZ Unité de Recherches Zootechniques, Centre de recherche Antilles-Guyane, Petit-Bourg, France
| | | | - Emmanuel Oladeji Alamu
- IITA, Food and Nutrition Sciences Laboratory, Lusaka, Zambia
- IITA, Food and Nutrition Sciences Laboratory, Ibadan, Nigeria
| | | | - Denis Cornet
- CIRAD, UMR AGAP Institut, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
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Dossa K, Morel A, Houngbo ME, Mota AZ, Malédon E, Irep JL, Diman JL, Mournet P, Causse S, Van KN, Cornet D, Chair H. Genome-wide association studies reveal novel loci controlling tuber flesh color and oxidative browning in Dioscorea alata. J Sci Food Agric 2024; 104:4895-4906. [PMID: 37209230 DOI: 10.1002/jsfa.12721] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 03/28/2023] [Accepted: 05/20/2023] [Indexed: 05/22/2023]
Abstract
BACKGROUND Consumers' preferences for food crops are guided by quality attributes. This study aimed at deciphering the genetic basis of quality traits, especially tuber flesh color (FC) and oxidative browning (OB) in Dioscorea alata, based on the genome-wide association studies (GWAS) approach. The D. alata panel was planted at two locations in Guadeloupe. At harvest, the FC was scored visually as white, cream, or purple on longitudinally sliced mature tubers. The OB was scored visually as the presence or absence of browning after 15 min of exposure of the sliced samples to ambient air. RESULTS Phenotypic characterization for FC and OB of a diverse panel of D. alata genotypes highlighted significant variation within the panel and across two locations. The genotypes within the panel displayed a weak structure and could be classified into three subpopulations. GWAS identified 14 and 4 significant associations for tuber FC and OB, respectively, with phenotypic variance, explained values ranging from 7.18% to 18.04%. Allele segregation analysis at the significantly associated loci highlighted the favorable alleles for the desired traits, i.e., white FC and no OB. A total of 24 putative candidate genes were identified around the significant signals. A comparative analysis with previously reported quantitative trait loci indicated that numerous genomic regions control these traits in D. alata. CONCLUSION Our study provides important insights into the genetic control of tuber FC and OB in D. alata. The major and stable loci can be further utilized to improve selection in breeding programs for developing new cultivars with enhanced tuber quality. © 2023 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Komivi Dossa
- CIRAD, UMR AGAP Institut, Petit Bourg, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Angélique Morel
- CIRAD, UMR AGAP Institut, Petit Bourg, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Mahugnon Ezékiel Houngbo
- CIRAD, UMR AGAP Institut, Petit Bourg, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
- CIRAD, UMR AGAP Institut, Montpellier, France
| | - Ana Zotta Mota
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
- CIRAD, UMR AGAP Institut, Montpellier, France
| | | | - Jean-Luc Irep
- UR1321 ASTRO Agrosystèmes tropicaux, INRAE, Petit-Bourg (Guadeloupe), Paris, France
| | - Jean-Louis Diman
- UR1321 ASTRO Agrosystèmes tropicaux, INRAE, Petit-Bourg (Guadeloupe), Paris, France
| | - Pierre Mournet
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
- CIRAD, UMR AGAP Institut, Montpellier, France
| | - Sandrine Causse
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
- CIRAD, UMR AGAP Institut, Montpellier, France
| | | | - Denis Cornet
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
- CIRAD, UMR AGAP Institut, Montpellier, France
| | - Hâna Chair
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
- CIRAD, UMR AGAP Institut, Montpellier, France
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5
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Mota APZ, Dossa K, Lechaudel M, Cornet D, Mournet P, Santoni S, Lopez D, Chaïr H. Whole-genome sequencing and comparative genomics reveal candidate genes associated with quality traits in Dioscorea alata. BMC Genomics 2024; 25:248. [PMID: 38443859 PMCID: PMC10916269 DOI: 10.1186/s12864-024-10135-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 02/16/2024] [Indexed: 03/07/2024] Open
Abstract
BACKGROUND Quality traits are essential determinants of consumer preferences. Dioscorea alata (Greater Yam), is a starchy tuber crop in tropical regions. However, a comprehensive understanding of the genetic basis underlying yam tuber quality remains elusive. To address this knowledge gap, we employed population genomics and candidate gene association approaches to unravel the genetic factors influencing the quality attributes of boiled yam. METHODS AND RESULTS Comparative genomics analysis of 45 plant species revealed numerous novel genes absent in the existing D. alata gene annotation. This approach, adding 48% more genes, significantly enhanced the functional annotation of three crucial metabolic pathways associated with boiled yam quality traits: pentose and glucuronate interconversions, starch and sucrose metabolism, and flavonoid biosynthesis. In addition, the whole-genome sequencing of 127 genotypes identified 27 genes under selection and 22 genes linked to texture, starch content, and color through a candidate gene association analysis. Notably, five genes involved in starch content and cell wall composition, including 1,3-beta Glucan synthase, β-amylase, and Pectin methyl esterase, were common to both approaches and their expression levels were assessed by transcriptomic data. CONCLUSIONS The analysis of the whole-genome of 127 genotypes of D. alata and the study of three specific pathways allowed the identification of important genes for tuber quality. Our findings provide insights into the genetic basis of yam quality traits and will help the enhancement of yam tuber quality through breeding programs.
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Affiliation(s)
- Ana Paula Zotta Mota
- UMR AGAP, CIRAD, 34398, Montpellier, France
- AGAP, Univ Montpellier, CIRAD, INRAe, Montpellier SupAgro, Montpellier, France
- Université Côte d'Azur, Institut Sophia Agrobiotech, INRAE, CNRS, Sophia Antipolis, PACA, 06903, France
| | - Komivi Dossa
- UMR AGAP, CIRAD, 34398, Montpellier, France
- CIRAD, UMR AGAP Institut, 97170, Petit Bourg, Guadeloupe, France
| | - Mathieu Lechaudel
- UMR Qualisud, CIRAD, F97130, Capesterre-Belle-Eau, Guadeloupe, France
- QualiSud, Université Montpellier, Institut Agro, CIRAD, Avignon Université, Université de La Réunion, 34398, Montpellier, France
| | - Denis Cornet
- UMR AGAP, CIRAD, 34398, Montpellier, France
- AGAP, Univ Montpellier, CIRAD, INRAe, Montpellier SupAgro, Montpellier, France
| | - Pierre Mournet
- UMR AGAP, CIRAD, 34398, Montpellier, France
- AGAP, Univ Montpellier, CIRAD, INRAe, Montpellier SupAgro, Montpellier, France
| | - Sylvain Santoni
- AGAP, Univ Montpellier, CIRAD, INRAe, Montpellier SupAgro, Montpellier, France
| | - David Lopez
- UMR AGAP, CIRAD, 34398, Montpellier, France.
- AGAP, Univ Montpellier, CIRAD, INRAe, Montpellier SupAgro, Montpellier, France.
| | - Hana Chaïr
- UMR AGAP, CIRAD, 34398, Montpellier, France.
- AGAP, Univ Montpellier, CIRAD, INRAe, Montpellier SupAgro, Montpellier, France.
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Przybylska MS, Violle C, Vile D, Scheepens JF, Lacombe B, Le Roux X, Perrier L, Sales-Mabily L, Laumond M, Vinyeta M, Moulin P, Beurier G, Rouan L, Cornet D, Vasseur F. AraDiv: a dataset of functional traits and leaf hyperspectral reflectance of Arabidopsis thaliana. Sci Data 2023; 10:314. [PMID: 37225767 DOI: 10.1038/s41597-023-02189-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 04/27/2023] [Indexed: 05/26/2023] Open
Abstract
Data from functional trait databases have been increasingly used to address questions related to plant diversity and trait-environment relationships. However, such databases provide intraspecific data that combine individual records obtained from distinct populations at different sites and, hence, environmental conditions. This prevents distinguishing sources of variation (e.g., genetic-based variation vs. phenotypic plasticity), a necessary condition to test for adaptive processes and other determinants of plant phenotypic diversity. Consequently, individual traits measured under common growing conditions and encompassing within-species variation across the occupied geographic range have the potential to leverage trait databases with valuable data for functional and evolutionary ecology. Here, we recorded 16 functional traits and leaf hyperspectral reflectance (NIRS) data for 721 widely distributed Arabidopsis thaliana natural accessions grown in a common garden experiment. These data records, together with meteorological variables obtained during the experiment, were assembled to create the AraDiv dataset. AraDiv is a comprehensive dataset of A. thaliana's intraspecific variability that can be explored to address questions at the interface of genetics and ecology.
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Affiliation(s)
- Maria Stefania Przybylska
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France.
- LEPSE, Univ Montpellier, INRAE, Institut Agro Montpellier, Montpellier, France.
| | - Cyrille Violle
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Denis Vile
- LEPSE, Univ Montpellier, INRAE, Institut Agro Montpellier, Montpellier, France
| | - J F Scheepens
- Plant Evolutionary Ecology, Institute of Ecology, Evolution and Diversity, Faculty of Biological Sciences, Goethe University Frankfurt, Max-von-Laue-Str. 13, 60438, Frankfurt am Main, Germany
| | - Benoit Lacombe
- IPSIM, Univ Montpellier, CNRS, INRAE, Institut Agro Montpellier, Montpellier, France
| | - Xavier Le Roux
- Microbial Ecology Centre, UMR 1418 INRAE, UMR 5557 CNRS, INRAE, CNRS, University Lyon 1, University of Lyon, VetAgroSup, Villeurbanne, France
| | - Lisa Perrier
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | | | | | - Mariona Vinyeta
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Pierre Moulin
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Gregory Beurier
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
| | - Lauriane Rouan
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
| | - Denis Cornet
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
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Vasseur F, Cornet D, Beurier G, Messier J, Rouan L, Bresson J, Ecarnot M, Stahl M, Heumos S, Gérard M, Reijnen H, Tillard P, Lacombe B, Emanuel A, Floret J, Estarague A, Przybylska S, Sartori K, Gillespie LM, Baron E, Kazakou E, Vile D, Violle C. A Perspective on Plant Phenomics: Coupling Deep Learning and Near-Infrared Spectroscopy. Front Plant Sci 2022; 13:836488. [PMID: 35668791 PMCID: PMC9163986 DOI: 10.3389/fpls.2022.836488] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Accepted: 03/09/2022] [Indexed: 05/31/2023]
Abstract
The trait-based approach in plant ecology aims at understanding and classifying the diversity of ecological strategies by comparing plant morphology and physiology across organisms. The major drawback of the approach is that the time and financial cost of measuring the traits on many individuals and environments can be prohibitive. We show that combining near-infrared spectroscopy (NIRS) with deep learning resolves this limitation by quickly, non-destructively, and accurately measuring a suite of traits, including plant morphology, chemistry, and metabolism. Such an approach also allows to position plants within the well-known CSR triangle that depicts the diversity of plant ecological strategies. The processing of NIRS through deep learning identifies the effect of growth conditions on trait values, an issue that plagues traditional statistical approaches. Together, the coupling of NIRS and deep learning is a promising high-throughput approach to capture a range of ecological information on plant diversity and functioning and can accelerate the creation of extensive trait databases.
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Affiliation(s)
| | - Denis Cornet
- CIRAD, UMR AGAP Institut, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Grégory Beurier
- CIRAD, UMR AGAP Institut, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Julie Messier
- Department of Biology, University of Waterloo, Waterloo, ON, Canada
| | - Lauriane Rouan
- CIRAD, UMR AGAP Institut, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Justine Bresson
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Martin Ecarnot
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Mark Stahl
- Center for Plant Molecular Biology (ZMBP), University of Tübingen, Tübingen, Germany
| | - Simon Heumos
- Quantitative Biology Center (QBiC), University of Tübingen, Quantitative Biology Center (QBiC), University of Tübingen, Germany
- Biomedical Data Science, Department of Computer Science, University of Tübingen, Tübingen, Germany
| | - Marianne Gérard
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Hans Reijnen
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Pascal Tillard
- BPMP, Univ Montpellier, CNRS, INRAE, Montpellier, France
| | - Benoît Lacombe
- BPMP, Univ Montpellier, CNRS, INRAE, Montpellier, France
| | - Amélie Emanuel
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
- BPMP, Univ Montpellier, CNRS, INRAE, Montpellier, France
| | - Justine Floret
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
| | | | | | - Kevin Sartori
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | | | - Etienne Baron
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Elena Kazakou
- CEFE, Univ Montpellier, CNRS, EPHE, Institut Agro, IRD, Montpellier, France
| | - Denis Vile
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
| | - Cyrille Violle
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
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Estarague A, Vasseur F, Sartori K, Bastias CC, Cornet D, Rouan L, Beurier G, Exposito-Alonso M, Herbette S, Bresson J, Vile D, Violle C. Into the range: a latitudinal gradient or a center-margins differentiation of ecological strategies in Arabidopsis thaliana? Ann Bot 2022; 129:343-356. [PMID: 34918027 PMCID: PMC8835660 DOI: 10.1093/aob/mcab149] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 12/07/2021] [Accepted: 12/14/2021] [Indexed: 05/28/2023]
Abstract
BACKGROUND AND AIMS Determining within-species large-scale variation in phenotypic traits is central to elucidate the drivers of species' ranges. Intraspecific comparisons offer the opportunity to understand how trade-offs and biogeographical history constrain adaptation to contrasted environmental conditions. Here we test whether functional traits, ecological strategies from the CSR scheme and phenotypic plasticity in response to abiotic stress vary along a latitudinal or a center- margins gradient within the native range of Arabidopsis thaliana. METHODS We experimentally examined the phenotypic outcomes of plant adaptation at the center and margins of its geographic range using 30 accessions from southern, central and northern Europe. We characterized the variation of traits related to stress tolerance, resource use, colonization ability, CSR strategy scores, survival and fecundity in response to high temperature (34 °C) or frost (- 6 °C), combined with a water deficit treatment. KEY RESULTS We found evidence for both a latitudinal and a center-margins differentiation for the traits under scrutiny. Age at maturity, leaf dry matter content, specific leaf area and leaf nitrogen content varied along a latitudinal gradient. Northern accessions presented a greater survival to stress than central and southern accessions. Leaf area, C-scores, R-scores and fruit number followed a center-margins differentiation. Central accessions displayed a higher phenotypic plasticity than northern and southern accessions for most studied traits. CONCLUSIONS Traits related to an acquisitive/conservative resource-use trade-off followed a latitudinal gradient. Traits associated with a competition/colonization trade-off differentiated along the historic colonization of the distribution range and then followed a center-margins differentiation. Our findings pinpoint the need to consider the joint effect of evolutionary history and environmental factors when examining phenotypic variation across the distribution range of a species.
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Affiliation(s)
- Aurélien Estarague
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, F-34293, Montpellier, France
- Laboratoire d’Ecophysiologie des Plantes sous Stress Environnementaux (LEPSE), INRAE, Montpellier SupAgro, UMR759, F-34060, Montpellier, France
| | - François Vasseur
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, F-34293, Montpellier, France
| | - Kevin Sartori
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, F-34293, Montpellier, France
- Department of Plant Biology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | | | - Denis Cornet
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
| | - Lauriane Rouan
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
| | - Gregory Beurier
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
| | - Moises Exposito-Alonso
- Department of Plant Biology, Carnegie Institution for Science, Stanford University, Stanford, CA 94305, USA
- Department of Biology, Stanford University, Stanford, CA 94305, USA
| | | | - Justine Bresson
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, F-34293, Montpellier, France
| | - Denis Vile
- Laboratoire d’Ecophysiologie des Plantes sous Stress Environnementaux (LEPSE), INRAE, Montpellier SupAgro, UMR759, F-34060, Montpellier, France
| | - Cyrille Violle
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, F-34293, Montpellier, France
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Cormier F, Martin G, Vignes H, Lachman L, Cornet D, Faure Y, Maledon E, Mournet P, Arnau G, Chaïr H. Genetic control of flowering in greater yam (Dioscorea alata L.). BMC Plant Biol 2021; 21:163. [PMID: 33794780 PMCID: PMC8015048 DOI: 10.1186/s12870-021-02941-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 03/25/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Greater yam (Dioscorea alata L.) is a major tropical and subtropical staple crop cultivated for its starchy tubers. Breeding of this dioecious species is hampered by its erratic flowering, yet little is currently known on the genetic determinism of its sexual reproduction. RESULT Here we used a genome-wide association approach and identified a major genetic barrier to reproduction in yam on chromosome 1, as represented by two candidate genes. A deleterious effect on male fitness could be hypothesized considering the involvement of these two genes in male reproduction and the low frequency of this non-flowering dominant allele within the male genepool. We also extended the hypothesis of a XX/XY sex-determination system located on chromosome 6 in D. alata to encompass most of the species diversity. Moreover, a kompetitive allele-specific PCR (KASPar) marker was designed and validated that enables accurate cultivar sex estimation. The reconstruction of chromosome 6 associated with the detection of highly putative structural variations confirmed the possible involvement of a major part of the chromosome. CONCLUSION The findings of this study, combined with proper estimation of accession ploidy levels to avoid endosperm incompatibility issues, could facilitate the design of future promising parental combinations in D. alata breeding programs. Moreover, the discovery of this genetic barrier to reproduction opens new avenues for gaining insight into yam reproductive biology and diversification.
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Affiliation(s)
- Fabien Cormier
- CIRAD, UMR AGAP Institut, 97170, Petit-Bourg, Guadeloupe, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
| | - Guillaume Martin
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
| | - Hélène Vignes
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
| | - Laurie Lachman
- CIRAD, UMR AGAP Institut, 97170, Petit-Bourg, Guadeloupe, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
- Univ. Des Antilles, Pôle Guadeloupe, IUT Saint Claude, Guadeloupe, France
| | - Denis Cornet
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
| | - Yoana Faure
- INRA, UR ASTRO Agrosytèmes Tropicaux, Petit-Bourg, Guadeloupe, France
| | - Erick Maledon
- CIRAD, UMR AGAP Institut, 97170, Petit-Bourg, Guadeloupe, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
| | - Pierre Mournet
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
| | - Gemma Arnau
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France
| | - Hâna Chaïr
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, F-34398, Montpellier, France.
- CIRAD, UMR AGAP Institut, F-34398, Montpellier, France.
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10
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Alamu EO, Nuwamanya E, Cornet D, Meghar K, Adesokan M, Tran T, Belalcazar J, Desfontaines L, Davrieux F. Near-infrared spectroscopy applications for high-throughput phenotyping for cassava and yam: A review. Int J Food Sci Technol 2021; 56:1491-1501. [PMID: 33776247 PMCID: PMC7984172 DOI: 10.1111/ijfs.14773] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Revised: 08/06/2020] [Accepted: 08/10/2020] [Indexed: 01/20/2023]
Abstract
The review aimed to identify the different high‐throughput phenotyping (HTP) techniques that used for quality evaluation in cassava and yam breeding programmes, and this has provided insights towards the development of metrics and their application in cassava and yam improvements. A systematic review of the published research articles involved the use of NIRS in analysing the quality traits of cassava and yam was carried out, and Scopus, Science Direct, Web of Sciences and Google Scholar were searched. The results of the review established that NIRS could be used in understanding the chemical constituents (carbohydrate, protein, vitamins, minerals, carotenoids, moisture, starch, etc.) for high‐throughput phenotyping. This study provides preliminary evidence of the application of NIRS as an efficient and affordable procedure for HTP. However, the feasibility of using mid‐infrared spectroscopy (MIRS) and hyperspectral imaging (HSI) in combination with the NIRS could be further studied for quality traits phenotyping.
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Affiliation(s)
- Emmanuel Oladeji Alamu
- International Institute of Tropical Agriculture (IITA) Southern Africa Hub PO Box 310142 Chelstone, Lusaka Zambia.,International Institute of Tropical Agriculture (IITA) PMB 5320, Oyo Road Ibadan Oyo State Nigeria
| | - Ephraim Nuwamanya
- National Crops Resources Research Institute NaCRRI P.O Box 7084 Kampala Uganda
| | - Denis Cornet
- CIRAD UMR AGAP Montpellier F-34398 France.,Univ. Montpellier CIRAD INRA Montpellier SupAgro France
| | - Karima Meghar
- UMR Qualisud University of Montpellier CIRAD Montpellier SupAgro University of Avignon University of La Réunion 73 rue JF Breton Montpellier 34398 France
| | - Michael Adesokan
- International Institute of Tropical Agriculture (IITA) PMB 5320, Oyo Road Ibadan Oyo State Nigeria
| | - Thierry Tran
- UMR Qualisud University of Montpellier CIRAD Montpellier SupAgro University of Avignon University of La Réunion 73 rue JF Breton Montpellier 34398 France.,The Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT) CGIAR Research Program on Roots Tubers and Bananas (RTB) Apartado Aéreo 6713 Cali Colombia
| | - John Belalcazar
- The Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT) CGIAR Research Program on Roots Tubers and Bananas (RTB) Apartado Aéreo 6713 Cali Colombia
| | - Lucienne Desfontaines
- Centre de recherche Antilles-Guyane INRAe UR 1321 ASTRO Agrosystèmes tropicaux Petit-Bourg France
| | - Fabrice Davrieux
- UMR Qualisud University of Montpellier CIRAD Montpellier SupAgro University of Avignon University of La Réunion 73 rue JF Breton Montpellier 34398 France
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Liber Y, Cornet D, Tournebize R, Feidt C, Mahieu M, Laurent F, Bedell JP. A Bayesian network approach for the identification of relationships between drivers of chlordecone bioaccumulation in plants. Environ Sci Pollut Res Int 2020; 27:41046-41051. [PMID: 31902080 DOI: 10.1007/s11356-019-07449-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 12/18/2019] [Indexed: 06/10/2023]
Abstract
Plants were sampled from four different types of chlordecone-contaminated land in Guadeloupe (West Indies). The objective was to investigate the importance of biological and agri-environmental parameters in the ability of plants to bioaccumulate chlordecone. Among the plant traits studied, only the growth habit significantly affected chlordecone transfer, since prostrate plants concentrated more chlordecone than erect plants. In addition, intensification of land use has led to a significant increase in the amount of chlordecone absorbed by plants. The use of Bayesian networks uncovers some hypothesis and identifies paths for reflection and possible studies to identify and quantify relationships that explain our data. Graphical abstract.
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Affiliation(s)
- Yohan Liber
- LEHNA, UMR 5023, CNRS, ENTPE, University of Lyon, F-69518, Vaulx-en-Velin, France
- INRA, UMR1331, Toxalim, F-31027, Toulouse Cedex 3, France
| | - Denis Cornet
- CIRAD, UMR AGAP, F-34398, Montpellier, France
- University of Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | | | - Cyril Feidt
- URAFPA, Université de Lorraine, INRA USC340, F-54500, Vandoeuvre-lès-Nancy, France
| | - Maurice Mahieu
- INRA, URZ, UR 143, F-97170, Petit-Bourg, Guadeloupe, France
| | | | - Jean-Philippe Bedell
- LEHNA, UMR 5023, CNRS, ENTPE, University of Lyon, F-69518, Vaulx-en-Velin, France.
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Thursch E, Szabo G, Goupil JM, Chambellan A, Cornet D. Propriétés structurales de zéolithes Y chromées relation avec l’activité catalytique. ACTA ACUST UNITED AC 2017. [DOI: 10.1051/jcp/1982790479] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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Abstract
The sorption of benzene over a series of CrNaHY zeolites has been measured at 370–530 K. Although neither series of isotherms entirely satisfies the Langmuir or Dubinin model, both formulae give identical values for the saturation limit. The free volumes were found to decrease with increasing H+ or Crn+ ion concentration, and have been related to extra-framework phases. The initial heats of sorption indicate that the affinity of benzene for the different sorption sites varies in the order Na+ > Crn+ ≃ H+. For the sodium-rich zeolites, it was found that the sorption heats increase at temperatures above 430 K.
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Affiliation(s)
- T. Chevreau
- Laboratoire de Catalyse et Spectrochimie, URA CNRS 0414, I.S.M.Ra., University of Caen, 14032 Caen Cedex, France
| | - D. Cornet
- Laboratoire de Catalyse et Spectrochimie, URA CNRS 0414, I.S.M.Ra., University of Caen, 14032 Caen Cedex, France
| | - J. Léglise
- Laboratoire de Catalyse et Spectrochimie, URA CNRS 0414, I.S.M.Ra., University of Caen, 14032 Caen Cedex, France
| | - K. Roudias
- Laboratoire de Catalyse et Spectrochimie, URA CNRS 0414, I.S.M.Ra., University of Caen, 14032 Caen Cedex, France
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Maliki R, Sinsin B, Floquet A, Cornet D, Malezieux E, Vernier P. Dry Matter Production, Nutrient Cycled and Removed, and Soil Fertility Changes in Yam-Based Cropping Systems with Herbaceous Legumes in the Guinea-Sudan Zone of Benin. Scientifica (Cairo) 2016; 2016:5212563. [PMID: 27446635 PMCID: PMC4944082 DOI: 10.1155/2016/5212563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2015] [Accepted: 05/22/2016] [Indexed: 06/06/2023]
Abstract
Traditional yam-based cropping systems (shifting cultivation, slash-and-burn, and short fallow) often result in deforestation and soil nutrient depletion. The objective of this study was to determine the impact of yam-based systems with herbaceous legumes on dry matter (DM) production (tubers, shoots), nutrients removed and recycled, and the soil fertility changes. We compared smallholders' traditional systems (1-year fallow of Andropogon gayanus-yam rotation, maize-yam rotation) with yam-based systems integrated herbaceous legumes (Aeschynomene histrix/maize intercropping-yam rotation, Mucuna pruriens/maize intercropping-yam rotation). The experiment was conducted during the 2002 and 2004 cropping seasons with 32 farmers, eight in each site. For each of them, a randomized complete block design with four treatments and four replicates was carried out using a partial nested model with five factors: Year, Replicate, Farmer, Site, and Treatment. Analysis of variance (ANOVA) using the general linear model (GLM) procedure was applied to the dry matter (DM) production (tubers, shoots), nutrient contribution to the systems, and soil properties at depths 0-10 and 10-20 cm. DM removed and recycled, total N, P, and K recycled or removed, and soil chemical properties (SOM, N, P, K, and pH water) were significantly improved on yam-based systems with legumes in comparison with traditional systems.
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Affiliation(s)
- Raphiou Maliki
- Institut National des Recherches Agricoles du Bénin (INRAB), P.O. Box 2128, Calavi, Benin
| | - Brice Sinsin
- Faculté des Sciences Agronomiques de l'Université d'Abomey-Calavi (FSA/UAC), P.O. Box 01-526, Cotonou, Benin
| | - Anne Floquet
- Centre Béninois pour l'Environnement et le Développement Economique et Social (CEBEDES), P.O. Box 02-331, Cotonou, Benin
| | - Denis Cornet
- Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), 34398 Montpellier Cedex 5, France
| | - Eric Malezieux
- Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), UPR Hortsys, 34398 Montpellier Cedex 5, France
| | - Philippe Vernier
- Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), 34398 Montpellier Cedex 5, France
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Compere K, Cornet D, Dagot L. Analyse des déterminants de la capacité de « personnalisation de poste » (job-crafting), source de bien-être au travail. ARCH MAL PROF ENVIRO 2016. [DOI: 10.1016/j.admp.2016.03.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Barlagne C, Cornet D, Blazy JM, Diman JL, Ozier-Lafontaine H. Consumers' preferences for fresh yam: a focus group study. Food Sci Nutr 2016; 5:54-66. [PMID: 28070316 PMCID: PMC5217904 DOI: 10.1002/fsn3.364] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Revised: 03/07/2016] [Accepted: 03/08/2016] [Indexed: 11/10/2022] Open
Abstract
In West and Central Africa and in the Caribbean, yam is one of the most important sources of carbohydrates and has a great potential to improve food security. The yam production sector is, however, now challenged by the satisfaction of evolving consumers' preferences. Since little is known about consumers' preferences regarding yams' characteristics, product quality, and the drivers of yam purchase, six focus group discussions were conducted (for a total of 31 participants). Among the purchasing criteria, price was considered more important than the others. It was followed by the external damage, the origin, and the size of the tuber. The most frequently cited consumption criteria were the taste, the texture, and color of flesh after cooking. Taste was considered more important than the other criteria. Three consumers' profiles were established reflecting heterogeneity in preferences, especially as concerns the willingness to pay for yam and consumption habits. They were designated as the Hedonistic, the Thrifty and the Flexible. Our results suggest that innovations can be implemented to sustain and stimulate the development of the yam sector in Guadeloupe. Two main development paths were identified. The first path is the valorization of the great existing diversity of yam varieties and the increase in the level of information for consumers about product attributes such as the cooking mode, the origin, and the mode of production. Building a marketing strategy based on the valorization of this diversity can help maintain and preserve yam's agro‐biodiversity and the satisfaction of rapidly evolving consumption habits. The second path is the definition of yam ideotypes that suit consumers' needs. We expect that tailoring the production to consumers' needs will have a positive impact on global food security in the Caribbean region.
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Affiliation(s)
- Carla Barlagne
- UR1321 ASTRO Agrosystèmes tropicaux INRA Petit-Bourg (Guadeloupe) F-97170 France
| | - Denis Cornet
- UMR AGAP CIRAD Petit-Bourg (Guadeloupe) F-97170 France
| | - Jean-Marc Blazy
- UR1321 ASTRO Agrosystèmes tropicaux INRA Petit-Bourg (Guadeloupe) F-97170 France
| | - Jean-Louis Diman
- UR1321 ASTRO Agrosystèmes tropicaux INRA Petit-Bourg (Guadeloupe) F-97170 France
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Penet L, Cornet D, Blazy JM, Alleyne A, Barthe E, Bussière F, Guyader S, Pavis C, Pétro D. Varietal Dynamics and Yam Agro-Diversity Demonstrate Complex Trajectories Intersecting Farmers' Strategies, Networks, and Disease Experience. Front Plant Sci 2016; 7:1962. [PMID: 28066500 PMCID: PMC5179526 DOI: 10.3389/fpls.2016.01962] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Accepted: 12/12/2016] [Indexed: 05/13/2023]
Abstract
Loss of varietal diversity is a worldwide challenge to crop species at risk for genetic erosion, while the loss of biological resources may hinder future breeding objectives. Loss of varieties has been mostly investigated in traditional agricultural systems where variety numbers are dramatically high, or for most economically important crop species for which comparison between pre-intensive and modern agriculture was possible. Varietal dynamics, i.e., turnover, or gains and losses of varieties by farmers, is nevertheless more rarely studied and while we currently have good estimates of genetic or varietal diversity for most crop species, we have less information as to how on farm agro-diversity changes and what cause its dynamics. We therefore investigated varietal dynamics in the agricultural yam system in the Caribbean island of Guadeloupe. We interviewed producers about varieties they cultivated in the past compared to their current varieties, in addition to characterizing yam cropping characteristics and both farm level and producers socio-economic features. We then used regression tree analyses to investigate the components of yam agro-diversity, varietal dynamics and impact of anthracnose on varieties. Our data demonstrated that no dramatic loss of varieties occurred within the last decades. Cultivation changes mostly affected widespread cultivars while frequency of uncommon varieties stayed relatively stable. Varietal dynamics nevertheless followed sub-regional patterns, and socio-economic influences such as producer age or farm crop diversity. Recurrent anthracnose epidemics since the 1970s did not alter varietal dynamics strongly, but sometimes translated into transition from Dioscorea alata to less susceptible species or into a decrease of yam cultivation. Factors affecting changes in agro-diversity were not relating to agronomy in our study, and surprisingly there were different processes delineating short term from long term varietal dynamics, independently of disease risk. Our results highlighted the importance of understanding varietal dynamics, an often overlooked component of agriculture sustainability, in addition to evolutionary forces shaping agro-diversity and genetic diversity distribution within crops. It is also crucial to understand how processes involved do scale up worldwide and for different crop species, so as not to mislead on-farm conservation efforts and efficacy of agro-diversity preservation.
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Affiliation(s)
- Laurent Penet
- INRA, UR1321, ASTRO Agrosystèmes TropicauxGuadeloupe, France
- *Correspondence: Laurent Penet,
| | | | - Jean-Marc Blazy
- INRA, UR1321, ASTRO Agrosystèmes TropicauxGuadeloupe, France
| | - Angela Alleyne
- Department of Biological and Chemical Sciences, Cave Hill Campus – University of the West IndiesBridgetown, Barbados
| | - Emilie Barthe
- INRA, UR1321, ASTRO Agrosystèmes TropicauxGuadeloupe, France
| | | | | | - Claudie Pavis
- INRA, UR1321, ASTRO Agrosystèmes TropicauxGuadeloupe, France
| | - Dalila Pétro
- INRA, UR1321, ASTRO Agrosystèmes TropicauxGuadeloupe, France
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Franck H, Christian M, Noël A, Brigitte P, Joseph HD, Cornet D, Mathurin NC. Effects of cultivar and harvesting conditions (age, season) on the texture and taste of boiled cassava roots. Food Chem 2011. [DOI: 10.1016/j.foodchem.2010.10.088] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Junca AM, Dumont M, Cornet D, Douard S, De Mouzon J, Prisant N. Is intracytoplasmic morphologically selected sperm injection (IMSI) detrimental for pregnancy outcome? Fertil Steril 2010. [DOI: 10.1016/j.fertnstert.2010.07.118] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Breysse M, Bachelier J, Bonnelle JP, Cattenot M, Cornet D, Décamp T, Duchet JC, Durand R, Engelhard P, Frety R, Gachet C, Genested P, Grimblot J, Gueguen C, Kasztelan S, Lacroix M, Lavalley JC, Leclercq C, Moreau C, De Mourgues L, Olivé JL, Payen E, Portefaix JL, Toulhoat H, Vrinat M. New Developments in Hydrotreating Catalysis : Characterization and Optimization of Niw/A12O3 Catalysts. ACTA ACUST UNITED AC 2010. [DOI: 10.1002/bscb.19870961101] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Bachelier J, Tilliette NJ, Cornac M, Duchet JC, Lavalley JC, Cornet D. Sulfided CO-mo/AL2O3 Catalysts: Carbon Monoxide Chemisorption and Surface Structures. ACTA ACUST UNITED AC 2010. [DOI: 10.1002/bscb.19840930816] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Fenichel P, Letur H, Chevalier N, Lelannou D, Ohl J, Cornet D, Chalas-Boissonnas C, Jonard-Catteau S, Greck-Chassain TH, Cedrin-Durnerin I, Bonduelle M, Oberye J, Passier D, Mannaerts B, Belva F, Painter R, De Schepper J, Roseboom T, Devroey P, Liebaers I, Bonduelle M, Hagman A, Bryman I, Hanson C, Kallen K, Landin-Wilhelmsen K, Barrenas M, Wennerholm U, Van Montfoort APA, Nelissen ECM, Coonen E, Bras M, Schreurs IL, Derhaag JG, Evers JLH, Dumoulin JCM. Session 15: Safery in Art. Hum Reprod 2010. [DOI: 10.1093/humrep/de.25.s1.15] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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23
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Dessolle L, Darai E, Cornet D, Rouzier R, Coutant C, Mandelbaum J, Antoine JM. Determinants of pregnancy rate in the donor oocyte model: a multivariate analysis of 450 frozen-thawed embryo transfers. Hum Reprod 2009; 24:3082-9. [DOI: 10.1093/humrep/dep303] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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24
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Fiori O, Cornet D, Antoine J, Uzan S, Mandelbaum J. P-102. Fertil Steril 2006. [DOI: 10.1016/j.fertnstert.2006.07.447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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25
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Fiori O, Cornet D, Darai E, Antoine JM, Bazot M. Uro-retroperitoneum after ultrasound-guided transvaginal follicle puncture in an oocyte donor: a case report. Hum Reprod 2006; 21:2969-71. [PMID: 16940321 DOI: 10.1093/humrep/del252] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Ultrasound-guided transvaginal follicle aspiration is the standard technique for oocyte retrieval prior to IVF. Complications are rare, but some are potentially serious. We report a case of ureteral injury with acute-onset uro-retroperitoneum in a volunteer oocyte donor. The patient recovered rapidly after ureteral stenting. This case underlines the need for all candidate oocyte donors to receive proper information on serious procedure-related complications.
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Affiliation(s)
- Olivia Fiori
- Service de Gynécologie Obstétrique et Médecine de la Reproduction, Hôpital Tenon, Paris, France.
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26
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Bachelier J, Duchet JC, Cornet D. Oxygen uptake by sulfided nickel-aluminum oxide catalysts. Correlation with activity. ACTA ACUST UNITED AC 2002. [DOI: 10.1021/j100452a012] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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27
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Cornet D, Goupil JM. Response to Comments on "Alkylation of Isobutane by Ethylene: A Thermodynamic Study". Ind Eng Chem Res 2002. [DOI: 10.1021/ie00036a051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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28
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Salat-Baroux J, Cornet D, Mandelbaum J, Watanabe Y, Merviel P, Antoine JM. [Oocyte donation after the bioethics law. Medical, ethical and legal implications drawn form a series of 300 cases at the Tenon hospital]. Bull Acad Natl Med 2002; 185:373-84; discussion 384-5. [PMID: 11474591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/20/2023]
Abstract
This is the perfect example of the problems which are the consequences of the actual medicine. We carried out an ovocyte donation study at the Tenon Hospital, in Paris, between 1994 and 1999 involving 177 cryopreserved thawed embryo transfers among 300 recipients. This study enables us to stress the ethical difficulties posed by the so called bioethical laws of 1994. Simultaneously two consequences became clearly evident: a paucity of donors, and the necessity to only transfer frozen embryos due to decree of 1996 upon sanitary security that imposes the quarantine of embryos for six months. On the other hand, the use of this method has yielded important new information regarding embryo implantation and the importance of ovocyte quality that is closely correlated to donor age.
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Affiliation(s)
- J Salat-Baroux
- Service de Gynécologie Obstétrique et Biologie de la Reproduction, Hôpital Tenon, 4 rue de la Chine-75020 Paris
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29
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Watanabe Y, Cornet D, Merviel P, Mandelbaum J, Antoine J, Uzan S. Influence of Husband’s Age on Outcome of a Shared Oocyte Donation Program. Fertil Steril 2000. [DOI: 10.1016/s0015-0282(00)00933-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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30
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Antoine JM, Merviel P, Cornet D, Mandelbaum J, Salat-Baroux J, Uzan S. [Therapeutic management of ovarian dystrophy and insufficiency in abortion disorders: recent data]. Gynecol Obstet Fertil 2000; 28:205-10. [PMID: 10786401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
Abstract
Many reports suggested that the high rate of miscarriage in women with polycystic ovaries may be due to increased urine and/or plasma LH concentration. In fact, with the exception of pulsatile GnRH, any treatment likely to increase the plasma LH level results in unchanged or rather low miscarriage rates. Conversely, a reduction in this rate by GnRH agonists is not conclusive. Excess weight may also increase the risk of miscarriage. In women with incipient ovarian failure, the miscarriage rate is mainly linked to age. No stimulation has been found to be effective in these patients. There is a need for more extensive evaluation in GnRH analog microdoses, recombinant FSH and GnRH antagonists. Oocyte donations from younger women are difficult to obtain because of the lack of donors in France.
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Affiliation(s)
- J M Antoine
- Service de gynécologie-obstétrique et médecine de la reproduction, Hôpital Tenon, Paris, France
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31
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32
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Stoleru S, Creac'h-Le MMN, Cornet D, Zerah S, Fermanian J, Bimbard S, Spira A. O-242. Women's anxiety is a predictor of the implantation step of in-vitro fertilization. Hum Reprod 1999. [DOI: 10.1093/humrep/14.suppl_3.134] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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33
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Mandelbaum J, Cornet D, Alnot M, Antoine J, Merviel P, Weil E, Salat-Baroux J. O-124. The quarantine of embryos obtained from donated oocytes does not impair the efficiency of oocyte donation. Hum Reprod 1999. [DOI: 10.1093/humrep/14.suppl_3.68] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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34
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Alnot M, Weil E, Letur-Könirsch H, Cornet D, Mandelbaum J. R-106. Is there a recognizable profile of oocyte donors in France? Hum Reprod 1999. [DOI: 10.1093/humrep/14.suppl_3.326-a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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35
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Weil E, Letur-Konirsch H, Cornet D. R-183. Feelings after donation of recipient recruited oocyte donors. Hum Reprod 1999. [DOI: 10.1093/humrep/14.suppl_3.360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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36
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Affiliation(s)
- N Boige
- Department of Pediatrics, Hôspital André Mignot, Versailles, France
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37
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Stoléru S, Cornet D, Vaugeois P, Fermanian J, Magnin F, Zerah S, Spira A. The influence of psychological factors on the outcome of the fertilization step of in vitro fertilization. J Psychosom Obstet Gynaecol 1997; 18:189-202. [PMID: 9304540 DOI: 10.3109/01674829709080688] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
Our objective was to determine whether psychological factors have an influence on the outcome of the fertilization step of in vitro fertilization (IVF) trials. The design was a prospective cohort study. We studied 48 women and 32 of their spouses. Each subject was assessed psychologically on the day before oocyte retrieval (OR) with the Child Project Questionnaire (CPQ) and the Ways of Coping Checklist. In addition, the State-Trait Anxiety Inventory was filled in by subjects 2 days before OR, and the State form was completed again for 6 additional days. The outcome measure was the success of the fertilization step. Logistic regression analysis was used to test the influence of psychological factors while taking into account the effect of medical and sociodemographic variables. The following variables were found to be statistically significant predictors of fertilization: normal sperm; tubal lesions or occlusion; women's factor II of the CPQ, i.e. Perception of Marital Harmony in the Project to Conceive a Child. We conclude that, even when the influence of biomedical variables is taken into account, the women's Perception of Marital Harmony in the Project to Conceive a Child, is a statistically significant predictor of the success of the fertilization step of IVF.
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Affiliation(s)
- S Stoléru
- Unité 292 de l'INSERM, Le Kremlin-Bicêtre, France
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38
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Cornet D. [Can we define the indications for oocyte donation?]. Contracept Fertil Sex 1997; 25:654-6. [PMID: 9410383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The outline of oocyte donation's indications is defined in France by the law of the 29 july 1994. A great number of situations do not pose any problem with regard to this principles: gonadal dysgenesis, premature ovarian failure, ovariectomy, castration following chimiotherapy or radiotherapy. However, others indications drive us progressively outside legal limits. What is the normal age of physiological menopause? Which threshold to justify oocyte donation for low responders? Is oocyte donation an alternative for other treatments failures? Ovocyte donation for genetic reason presents a risk of eugenic drift. Answering these questions is uneasy, though it is urgent for our patients to offer them a better uniformity.
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Affiliation(s)
- D Cornet
- Service du Pr J. Salat-Baroux, Maternité de l'Hôpital Tenon, Paris
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39
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Cornet D. [Oocyte donation: psychological and sociological aspects, the clinician's viewpoint]. Contracept Fertil Sex 1997; 25:660-4. [PMID: 9410385] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Among the treatment for medical assisted procreation, oocyte donation presents the more complex implications on psycho-sociological aspects. French law of the 29th July 1994, tries to prevent risk for the principal actors of oocyte donation, but has created new problems: 1) the shortage of donors lengthens the waiting list and reduces the succes's chance, 2) the absence of uniformitybetween different countries opens the door to an international market of the oocyte. Medical progress give new possibilities for situations that presented no problem in the past, for instance, pregnancies after menopause. Natural markers are questionned, it is too soon to conclude and to mesure all the consequences of our treatment on the well-being of the child, the recipient's couple, and the donor.
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Affiliation(s)
- D Cornet
- Service du Professeur Salat-Baroux, Maternité de l'Hôpital Tenon, Paris
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40
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Antoine JM, Loumaye E, Alvarez S, Merviel P, Cornet D, Mandelbaum J, Salat-Baroux J. [Clinical use of recombinant gonadotropins (FSH, LH, hCG)]. Contracept Fertil Sex 1997; 25:141-6. [PMID: 9116774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
The production of recombinant gonadotropins is independent of urine collection. They have a high specific activity and a better batch to batch consistency than urinary gonadotropins. In our IVF programme 62 normo-ovulatory patients less than 38 years old, with tubal or idiopathic infertility and normal sperm, were treated by r-FSH and randomized into four groups : with or without LHRH agonist, step-up or step-down stimulation. The overall results were higher in the agonist groups, but did not reveal any significant difference between step-up and step-down stimulation.
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Affiliation(s)
- J M Antoine
- Service de Gynécologie-Obstétrique, Hôpital Tenon, Paris
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41
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Cornet D, Alnot MO, Weil E, Sibony C, Mandelbaum J, Kuttenn F, Salat-Baroux J. [Oocyte donation -- embryo donation]. Contracept Fertil Sex 1996; 24:691-3. [PMID: 8998520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
From 1993 to 1995, 82 donors have permitted the retrieval of 810 oocytes allowing to obtain 411 embryos. 95 receiving couples have been included : 30 obtained a pregnancy, 7 abandoned and 38 are waiting for a transfer. The rate of pregnancies by transfer is superior to the one observed with the transfer of frozen embryos (40.5% versus 27%).
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Affiliation(s)
- D Cornet
- Service du Pt Saiat-Baroux, Matemité de l'Hôpital Tenom, Paris
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42
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Plachot M, Antoine JM, Alvarez S, Merviel P, Cornet D, Mandelbaum J, Salat-Baroux J. [Oocyte fertilizability and embryo development in poor responders]. Contracept Fertil Sex 1996; 24:384-5. [PMID: 8704817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Oocyte quality (atresia, immaturity), fertilizability, the incidence of abnormal fertilization (parthenogenesis, triploidy) and embryo development (rate of division and morphology) are similar in poor and normal responders. Only, the small number of available embryos (0.9/patient vs 4.4) penalize these patients.
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Affiliation(s)
- M Plachot
- Laboratoire de FIV et Biologie de la Reproduction, Hôpital Necker, Paris
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43
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Merviel P, Antoine JM, Alvarez S, Cornet D, Plachot M, Mandelbaum J, Uzan S, Salat-Baroux J. [Influence of infertility etiology and follicular stimulation protocols on pregnancy outcomes by in vitro fertilization]. Contracept Fertil Sex 1996; 24:157-62. [PMID: 8611938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
During a retrospective study on 152 singles pregnancies obtained by in vitro fecondation at Tenon hospital, and followed in this department between January 1990 and December 1994, we have studied the influence of the IVF (tubal origin, masculine or idiopathic) and the type of stimulation (human menopausal gonadotrophin: hMG or follicle stimulating hormone: FSH) on the weight of the newborn and the pathologies that occurred during the pregnancy. No difference in the antecedents has been found in the different group of patients. This study shows a significative difference (p < 0.001) of the newborn's weight when the indication of IVF is tubal origin or masculine. Also, in all IVF indications, the weight is significantly (p < 0.01) higher after a follicular stimulation by FSH versus hMG. For the pregnancy pathologies, no significative difference has been noted, although arterial hypertension, fetal growth retardation and gestational diabetes appear to be more frequent in the group of women who had stimulation by hMG.
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Affiliation(s)
- P Merviel
- Service de Gynécologie-Obstétrique et Fécondation in vitro, Hôpital Tenon, Paris
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44
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Abstract
A study, in which 110 patients were screened by a psychoanalyst, included 69 recipients who chose non-anonymous oocyte donation, i.e. they received oocytes from a known donor, most frequently a sister or a close relative. Another 41 recipients received anonymous oocytes, but had to bring a donor. Psychological motivations for either choice are reported, and significant topics such as attitudes towards confidentiality and links to the child are compared. No specific psychopathology is reported at this stage. An additional study on children born by these techniques is ongoing.
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Affiliation(s)
- E Weil
- Hôpital Necker, Paris, France
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45
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Salat-Baroux J, Cornet D. [Ethical and psychologic problems in pregnancies after donation of ovocytes]. Presse Med 1994; 23:318-9. [PMID: 8208690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
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46
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Antoine JM, Salat-Baroux J, Alvarez S, Cornet D, Firmin C, Mandelbaum J, Plachot M. [Hyperstimulation for in vitro fertilization with the "step-down" technique. Preliminary results from a prospective randomized study with and without LHRH agonists]. Contracept Fertil Sex 1993; 21:408-411. [PMID: 7920930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Twenty six normo-ovulatory patients < 38 years with tubal or idiopathic infertility and normal sperm were treated for IVF by FSH +/- hMG and randomized into four groups: with and without LHRH agonist, "step-up" or "step-down" stimulation. In the step down protocol, after 4 days with 4 amps plasmatic FSH reached its top level, then decreased. Despite reduction to only two amps, estradiol continued to increase in all the 5 women without agonist, whereas 3/7 with the long protocol were considered as low responders and stopped. The fertilization/cleavage rate was 69.2% in step-down and 45.7% in step-up (p < 0.04) with the short protocol, and respectively 65.6% and 41.9% (p < 0.03) with the long one. The pregnancy rate was equivalent in all groups.
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Affiliation(s)
- J M Antoine
- Service de gynécologie-obstétrique, Hôpital Tenon, Paris
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47
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Antoine JM, Salat-Baroux J, Alvarez S, Cornet D, Tibi C, Brieu V, Mandelbaum J, Plachot M. Preliminary data on the efficacy of a new human menopausal gonadotropin (hMG) preparation containing a reduced amount of luteinizing hormone (LH) for superovulation in an in vitro fertilization (IVF) program. J Assist Reprod Genet 1992; 9:404-6. [PMID: 1472821 DOI: 10.1007/bf01203968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Affiliation(s)
- J M Antoine
- Department of Obstetrics and Gynaecology and Biology of Reproduction, Hôpital Tenon, Paris, France
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48
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Abstract
The selective reduction of embryos in multiple pregnancies poses numerous medical, technical, ethical and psycho-social problems. In a retrospective study, we analysed nine hundred and twenty-two pregnancies obtained using medically assisted procreation between May 1982 and May 1990. Among 922 successful pregnancies, 372 were singleton, 102 were twin and 13 were triplet. Data from this analysis and from a French multicentre study of 262 embryo reduction procedures demonstrated the value of an embryo quality score for minimizing the risk of multiple pregnancy and the existence of extremely infrequent, ethically acceptable indications for embryo reduction. These indications included ultrasound-proven malformations of one fetus, multiple pregnancies in patients with extensive uterine scarring, and multiple pregnancy despite the appropriate use of preventative measures which can be expected to make this technique unnecessary in the future.
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Affiliation(s)
- J Salat-Baroux
- Department of Obstetrics and Gynaecology, Hôpital TENON, Paris
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49
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Salat-Baroux J, Cornet D, Alvarez S, Antoine JM, Mandelbaum J, Plachot M. Hormonal secretions in singleton pregnancies arising from the implantation of fresh or frozen embryos after oocyte donation in women with ovarian failure. Fertil Steril 1992; 57:150-5. [PMID: 1730310 DOI: 10.1016/s0015-0282(16)54792-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
OBJECTIVE To determine whether levels of human chorionic gonadotropin (hCG), 17 beta-estradiol (E2), and progesterone (P) are different in the peri-implantation phase of fresh versus frozen embryos. DESIGN Hormonal secretions were measured on days 9 and 11 after implantation and at 4, 5, and 6 weeks gestation. PATIENTS Thirty-one pregnancies were achieved in 65 patients with ovarian failure. Seventeen singleton pregnancies developed after implantation of 4 frozen and 13 fresh embryos. RESULTS Human chorionic gonadotropin and E2, contrary to P, were higher in cases of fresh embryos from the 9th day after transfer to the 5th week at which time they become statistically significant (respectively, for hCG and E2, 5,800.3 +/- 332.3 versus 2,027.3 +/- 916.3 [mean +/- SD] mIU/mL for hCG and 562.3 +/- 215 versus 291 +/- 152 pg/mL for E2). CONCLUSIONS This difference might be explained by either the higher number of fresh embryo replaced or by the fact that the number of blastomeres and also their metabolic activity could be reduced after freezing and thawing.
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50
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Cornet D, Antoine JM, Casanova S, Uzan S, Mandelbaum J, Plachot M, Salat-Baroux J. Obstetric evolution of pregnancies obtained from donated oocytes. Fetal Diagn Ther 1992; 7:31-5. [PMID: 1610500 DOI: 10.1159/000263647] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Of 44 pregnancies obtained at the Tenon Maternity Hospital by in vitro fertilization (IVF) using donated oocytes, 25 have already been completed by spontaneous delivery or cesarean section: 22 (88%) single; 2 (8%) twins, and 1 (4%) triple. The most frequently seen complications of pregnancy were hypertension (16%) and preterm labor in the last 3 months (12%). However, as compared to a control group of 275 pregnancies resulting from classical IVF, the only difference was a very high percentage of cesarean sections (72%). No fetal deaths or neonatal malformations were reported.
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Affiliation(s)
- D Cornet
- Department of Obstetrics and Gynecology, Tenon Hospital, Paris, France
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