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Malinowski N, Morgan MJ, Wylie J, Walsh T, Domingos S, Metcalfe S, Kaksonen AH, Barnhart EP, Mueller R, Peyton BM, Puzon GJ. Prokaryotic microbial ecology as an ecosurveillance tool for eukaryotic pathogen colonisation: Meiothermus and Naegleria fowleri. Water Res 2024; 254:121426. [PMID: 38471203 DOI: 10.1016/j.watres.2024.121426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 02/21/2024] [Accepted: 03/04/2024] [Indexed: 03/14/2024]
Abstract
Naegleria fowleri has been detected in drinking water distribution systems (DWDS) in Australia, Pakistan and the United States and is the causative agent of the highly fatal disease primary amoebic meningoencephalitis. Previous small scale field studies have shown that Meiothermus may be a potential biomarker for N. fowleri. However, correlations between predictive biomarkers in small sample sizes often breakdown when applied to larger more representative datasets. This study represents one of the largest and most rigorous temporal investigations of Naegleria fowleri colonisation in an operational DWDS in the world and measured the association of Meiothermus and N. fowleri over a significantly larger space and time in the DWDS. A total of 232 samples were collected from five sites over three-years (2016-2018), which contained 29 positive N. fowleri samples. Two specific operational taxonomic units assigned to M. chliarophilus and M. hypogaeus, were significantly associated with N. fowleri presence. Furthermore, inoculation experiments demonstrated that Meiothermus was required to support N. fowleri growth in field-collected biofilms. This validates Meiothermus as prospective biological tool to aid in the identification and surveillance of N. fowleri colonisable sites.
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Affiliation(s)
- Natalia Malinowski
- CSIRO Environment, Floreat Park, WA, Australia; Water Corporation of Western Australia, Leederville, WA, Australia
| | | | - Jason Wylie
- CSIRO Environment, Floreat Park, WA, Australia
| | - Tom Walsh
- CSIRO Environment, Canberra, ACT, Australia
| | - Sergio Domingos
- Water Corporation of Western Australia, Leederville, WA, Australia
| | | | | | - Elliott P Barnhart
- U.S. Geological Survey, Wyoming-Montana Water Science Center, Helena, Montana (MT), USA
| | - Rebecca Mueller
- Centre for Biofilm Engineering, and Thermal Biology Institute, Montana State University, Bozeman, MT, USA
| | - Brent M Peyton
- Centre for Biofilm Engineering, and Thermal Biology Institute, Montana State University, Bozeman, MT, USA
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Barnhart E, Kinsey SM, Wright PR, Caldwell SL, Hill V, Kahler A, Mattioli M, Cornman RS, Iwanowicz D, Eddy Z, Halonen S, Mueller R, Peyton BM, Puzon GJ. Naegleria fowleri Detected in Grand Teton National Park Hot Springs. ACS ES T Water 2024; 4:628-637. [PMID: 38356928 PMCID: PMC10862551 DOI: 10.1021/acsestwater.3c00650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 12/20/2023] [Accepted: 12/21/2023] [Indexed: 02/16/2024]
Abstract
The free-living thermophilic amoeba Naegleria fowleri (N. fowleri) causes the highly fatal disease primary amoebic meningoencephalitis. The environmental conditions that are favorable to the growth and proliferation of N. fowleri are not well-defined, especially in northern regions of the United States. In this study, we used culture-based methods and multiple molecular approaches to detect and analyzeN. fowleri and other Naegleria spp. in water, sediment, and biofilm samples from five hot spring sites in Grand Teton National Park, Wyoming, U.S.A. These results provide the first detections of N. fowleri in Grand Teton National Park and provide new insights into the distribution of pathogenic N. fowleri and other nonpathogenic Naegleria spp. in natural thermal water systems in northern latitudes.
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Affiliation(s)
- Elliott
P. Barnhart
- U.S.
Geological Survey, Wyoming/Montana Water Science Center, 3162 Bozeman Ave., Helena, Montana 59601, United States
| | - Stacy M. Kinsey
- U.S.
Geological Survey, Wyoming/Montana Water Science Center, 3162 Bozeman Ave., Helena, Montana 59601, United States
| | - Peter R. Wright
- U.S.
Geological Survey, Wyoming/Montana Water Science Center, 3162 Bozeman Ave., Helena, Montana 59601, United States
| | - Sara L. Caldwell
- U.S.
Geological Survey, Wyoming/Montana Water Science Center, 3162 Bozeman Ave., Helena, Montana 59601, United States
| | - Vince Hill
- U.S.
Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, Georgia 30333, United States
| | - Amy Kahler
- U.S.
Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, Georgia 30333, United States
| | - Mia Mattioli
- U.S.
Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, Georgia 30333, United States
| | - Robert S. Cornman
- U.S.
Geological Survey, Fort Collins Science Center, 2150 Centre Ave., Bldg. C, Fort Collins, Colorado 80526, United States
| | - Deborah Iwanowicz
- U.S.
Geological Survey, Eastern Ecological Science Center, 11649 Leetown Road, Kearneysville, West Virginia 25430, United States
| | - Zachary Eddy
- U.S.
Geological Survey, Wyoming/Montana Water Science Center, 3162 Bozeman Ave., Helena, Montana 59601, United States
| | - Sandra Halonen
- Department
of Microbiology & Cell Biology, Montana
State University, P.O. Box 173520, Bozeman, Montana 59717, United States
| | - Rebecca Mueller
- Western Regional
Research Center, U.S. Department of Agriculture
Agricultural Research Service, 800 Buchanan St., Albany, California 94710, United States
| | - Brent M. Peyton
- Center
for Biofilm Engineering, Chemical and Biochemical Engineering Department, Montana State University, 366 Barnard Hall, Bozeman Montana 59717, United States
| | - Geoffrey J Puzon
- CSIRO
Environment, Private
Bag No. 5, Wembley, Western
Australia 6913, Australia
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Olmo GD, Puzon GJ, Preciado CC, Douterelo I. Amoeba & Biofilms in UK Chlorinated Drinking Water Distributions Systems: Impact on Water Safety. Access Microbiol 2022. [DOI: 10.1099/acmi.ac2021.po0332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Amoeba-related diseases have been related with the presence of certain amoebas in domestic water, including drinking water. Biofilms in drinking water distribution systems are able to support amoeba growth by providing a food source and protecting them against disinfectants. Additionally, amoeba growth can be favoured by warm temperatures and climate change appears to contribute to its geographic spread.
The presence of amoeba and its association with potential pathogenic bacteria was studied in a real-scale chlorinated DWDS. The test facility comprised three independent pipe loops fed with water from the local water supply and for this study a varied flow hydraulic profile was applied based on daily patterns observed in real UK distribution networks. The daily regime was repeated for a biofilm growth phase of 30 days. Amoeba viability was tested by a culture-based method, non-nutrient agar (NNA)-E. coli plates, and then confirm by qPCR using specific primers to detect species of amoeba including Naegleria and Acanthamoeba. Amplicon sequencing of the 16s rRNA gene was used to characterise the biofilm and planktonic bacterial communities.
Several amoeba species belonging to the genera Acanthamoeba, Vermamoeba and Naegleria were identified in 30-day old biofilm samples. While the bacterial communities in biofilms were dominated by Variovorax, Pseudomonas and Aquabacterium. This study yielded new insights on the dynamics of amoeba and bacterial communities in DWDS. However, more research is required to accurately establish the impact of these inter-kingdom associations on human health.
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Murphy CWM, Davis GB, Rayner JL, Walsh T, Bastow TP, Butler AP, Puzon GJ, Morgan MJ. The role of predicted chemotactic and hydrocarbon degrading taxa in natural source zone depletion at a legacy petroleum hydrocarbon site. J Hazard Mater 2022; 430:128482. [PMID: 35739665 DOI: 10.1016/j.jhazmat.2022.128482] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 02/10/2022] [Accepted: 02/10/2022] [Indexed: 06/15/2023]
Abstract
Petroleum hydrocarbon contamination is a global problem which can cause long-term environmental damage and impacts water security. Natural source zone depletion (NSZD) is the natural degradation of such contaminants. Chemotaxis is an aspect of NSZD which is not fully understood, but one that grants microorganisms the ability to alter their motion in response to a chemical concentration gradient potentially enhancing petroleum NSZD mass removal rates. This study investigates the distribution of potentially chemotactic and hydrocarbon degrading microbes (CD) across the water table of a legacy petroleum hydrocarbon site near Perth, Western Australia in areas impacted by crude oil, diesel and jet fuel. Core samples were recovered and analysed for hydrocarbon contamination using gas chromatography. Predictive metagenomic profiling was undertaken to infer functionality using a combination of 16 S rRNA sequencing and PICRUSt2 analysis. Naphthalene contamination was found to significantly increase the occurrence of potential CD microbes, including members of the Comamonadaceae and Geobacteraceae families, which may enhance NSZD. Further work to explore and define this link is important for reliable estimation of biodegradation of petroleum hydrocarbon fuels. Furthermore, the outcomes suggest that the chemotactic parameter within existing NSZD models should be reviewed to accommodate CD accumulation in areas of naphthalene contamination, thereby providing a more accurate quantification of risk from petroleum impacts in subsurface environments, and the scale of risk mitigation due to NSZD.
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Affiliation(s)
- Cameron W M Murphy
- Environmental and Water Resources Section, Department of Civil and Environmental Engineering, Imperial College of Science,Technology and Medicine, Exhibition Road, London, United Kingdom; Centre for Environment and Life Sciences, CSIRO Land and Water, Private Bag No 5, Wembley, WA 6913, Australia
| | - Greg B Davis
- Centre for Environment and Life Sciences, CSIRO Land and Water, Private Bag No 5, Wembley, WA 6913, Australia
| | - John L Rayner
- Centre for Environment and Life Sciences, CSIRO Land and Water, Private Bag No 5, Wembley, WA 6913, Australia
| | - Tom Walsh
- Black Mountain Laboratories, CSIRO Land and Water, Acton, P.O. Box 1700, Canberra, ACT 2601, Australia
| | - Trevor P Bastow
- Centre for Environment and Life Sciences, CSIRO Land and Water, Private Bag No 5, Wembley, WA 6913, Australia
| | - Adrian P Butler
- Environmental and Water Resources Section, Department of Civil and Environmental Engineering, Imperial College of Science,Technology and Medicine, Exhibition Road, London, United Kingdom
| | - Geoffrey J Puzon
- Centre for Environment and Life Sciences, CSIRO Land and Water, Private Bag No 5, Wembley, WA 6913, Australia.
| | - Matthew J Morgan
- Black Mountain Laboratories, CSIRO Land and Water, Acton, P.O. Box 1700, Canberra, ACT 2601, Australia
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Herman EK, Greninger A, van der Giezen M, Ginger ML, Ramirez-Macias I, Miller HC, Morgan MJ, Tsaousis AD, Velle K, Vargová R, Záhonová K, Najle SR, MacIntyre G, Muller N, Wittwer M, Zysset-Burri DC, Eliáš M, Slamovits CH, Weirauch MT, Fritz-Laylin L, Marciano-Cabral F, Puzon GJ, Walsh T, Chiu C, Dacks JB. Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri. BMC Biol 2021; 19:142. [PMID: 34294116 PMCID: PMC8296547 DOI: 10.1186/s12915-021-01078-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 06/24/2021] [Indexed: 12/13/2022] Open
Abstract
BACKGROUND The opportunistic pathogen Naegleria fowleri establishes infection in the human brain, killing almost invariably within 2 weeks. The amoeba performs piece-meal ingestion, or trogocytosis, of brain material causing direct tissue damage and massive inflammation. The cellular basis distinguishing N. fowleri from other Naegleria species, which are all non-pathogenic, is not known. Yet, with the geographic range of N. fowleri advancing, potentially due to climate change, understanding how this pathogen invades and kills is both important and timely. RESULTS Here, we report an -omics approach to understanding N. fowleri biology and infection at the system level. We sequenced two new strains of N. fowleri and performed a transcriptomic analysis of low- versus high-pathogenicity N. fowleri cultured in a mouse infection model. Comparative analysis provides an in-depth assessment of encoded protein complement between strains, finding high conservation. Molecular evolutionary analyses of multiple diverse cellular systems demonstrate that the N. fowleri genome encodes a similarly complete cellular repertoire to that found in free-living N. gruberi. From transcriptomics, neither stress responses nor traits conferred from lateral gene transfer are suggested as critical for pathogenicity. By contrast, cellular systems such as proteases, lysosomal machinery, and motility, together with metabolic reprogramming and novel N. fowleri proteins, are all implicated in facilitating pathogenicity within the host. Upregulation in mouse-passaged N. fowleri of genes associated with glutamate metabolism and ammonia transport suggests adaptation to available carbon sources in the central nervous system. CONCLUSIONS In-depth analysis of Naegleria genomes and transcriptomes provides a model of cellular systems involved in opportunistic pathogenicity, uncovering new angles to understanding the biology of a rare but highly fatal pathogen.
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Affiliation(s)
- Emily K Herman
- Division of Infectious Disease, Department of Medicine, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, Canada.
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada.
| | - Alex Greninger
- Laboratory Medicine and Medicine / Infectious Diseases, UCSF-Abbott Viral Diagnostics and Discovery Center, UCSF Clinical Microbiology Laboratory UCSF School of Medicine, San Francisco, USA
- Department of Laboratory Medicine, University of Washington Medical Center, Montlake, USA
| | - Mark van der Giezen
- Centre for Organelle Research, Department of Chemistry, Bioscience and Environmental Engineering, University of Stavanger, Stavanger, Norway
| | - Michael L Ginger
- School of Applied Sciences, Department of Biological and Geographical Sciences, University of Huddersfield, Huddersfield, UK
| | - Inmaculada Ramirez-Macias
- Division of Infectious Disease, Department of Medicine, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, Canada
- Department of Cardiology, Hospital Clinico Universitario Virgen de la Arrixaca. Instituto Murciano de Investigación Biosanitaria. Centro de Investigación Biomedica en Red-Enfermedades Cardiovasculares (CIBERCV), Madrid, Spain
| | - Haylea C Miller
- CSIRO Land and Water, Centre for Environment and Life Sciences, Private Bag No.5, Wembley, Western Australia 6913, Australia
- CSIRO, Indian Oceans Marine Research Centre, Environomics Future Science Platform, Crawley, WA, Australia
| | - Matthew J Morgan
- CSIRO Land and Water, Black Mountain Laboratories, Canberra, Australia
| | | | - Katrina Velle
- Department of Biology, University of Massachusetts, Amherst, UK
| | - Romana Vargová
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic
| | - Kristína Záhonová
- Division of Infectious Disease, Department of Medicine, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, Canada
- Faculty of Science, Charles University, BIOCEV, Prague, Czech Republic
- Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Sebastian Rodrigo Najle
- Institut de Biologia Evolutiva (UPF-CSIC), Barcelona, Spain
- Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08003, Barcelona, Catalonia, Spain
| | - Georgina MacIntyre
- Department of Medicine, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, Canada
| | - Norbert Muller
- Institute of Parasitology, Vetsuisse Faculty Bern, University of Bern, Bern, Switzerland
| | - Mattias Wittwer
- Spiez Laboratory, Federal Office for Civil Protection, Austrasse, Spiez, Switzerland
| | - Denise C Zysset-Burri
- Department of Ophthalmology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland
| | - Marek Eliáš
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic
| | - Claudio H Slamovits
- Department of Biochemistry and Molecular Biology, Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, Halifax, Canada
| | - Matthew T Weirauch
- Center for Autoimmune Genomics and Etiology and Divisions of Biomedical Informatics and Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA
- Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, USA
| | | | - Francine Marciano-Cabral
- Department of Microbiology and Immunology, Virginia Commonwealth University School of Medicine, Richmond, Virginia, USA
| | - Geoffrey J Puzon
- CSIRO Land and Water, Centre for Environment and Life Sciences, Private Bag No.5, Wembley, Western Australia 6913, Australia
| | - Tom Walsh
- CSIRO Land and Water, Black Mountain Laboratories, Canberra, Australia
| | - Charles Chiu
- Laboratory Medicine and Medicine / Infectious Diseases, UCSF-Abbott Viral Diagnostics and Discovery Center, UCSF Clinical Microbiology Laboratory UCSF School of Medicine, San Francisco, USA
| | - Joel B Dacks
- Division of Infectious Disease, Department of Medicine, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, Canada.
- Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic.
- Department of Life Sciences, The Natural History Museum, London, UK.
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Bruckberger MC, Morgan MJ, Bastow TP, Walsh T, Prommer H, Mukhopadhyay A, Kaksonen AH, Davis GB, Puzon GJ. Investigation into the microbial communities and associated crude oil-contamination along a Gulf War impacted groundwater system in Kuwait. Water Res 2020; 170:115314. [PMID: 31835139 DOI: 10.1016/j.watres.2019.115314] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 11/14/2019] [Accepted: 11/15/2019] [Indexed: 06/10/2023]
Abstract
During the First Gulf War (1991) a large number of oil wells were destroyed and oil fires subsequently extinguished with seawater. As a result Kuwait's sparse fresh groundwater resources were severely contaminated with crude oil. Since then limited research has focused on the microbial community ecology of the groundwater and their impact on the associated contamination. Here, the microbial community ecology (bacterial, archaeal and eukaryotic) and how it relates to the characteristics of the hydrocarbon contaminants were examined for the first time since the 1991 event. This study was conducted using 15 wells along the main groundwater flow direction and detected several potential hydrocarbon degrading microorganisms such as Hyphomicrobiaceae, Porphyromonadaceae and Eurotiomycetes. The beta diversity of the microbial communities correlated significantly with total petroleum hydrocarbon (TPH) concentrations and salinity. The TPH consisted mainly of polar compounds present as an unresolved complex mixture (UCM) of a highly recalcitrant nature. Based on the proportions of TPH to dissolved organic carbon (DOC), the results indicate that some minor biodegradation has occurred within highly contaminated aquifer zones. However, overall the results from this study suggest that the observed variations in TPH concentrations among the sampled wells are mainly induced by mixing/dilution with pristine groundwater rather than by biodegradation of the contaminants. The findings make an important contribution to better understand the fate of the groundwater pollution in Kuwait, with important implications for the design of future remediation efforts.
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Affiliation(s)
- Melanie C Bruckberger
- CSIRO Land and Water, Private Bag No. 5, Wembley, Western Australia, 6913, Australia; University of Western Australia, School of Agriculture and Environment, 35 Stirling Hwy, Crawley, WA, 6009, Australia
| | | | - Trevor P Bastow
- CSIRO Land and Water, Private Bag No. 5, Wembley, Western Australia, 6913, Australia
| | - Tom Walsh
- CSIRO Land and Water, Canberra, ACT, Australia
| | - Henning Prommer
- CSIRO Land and Water, Private Bag No. 5, Wembley, Western Australia, 6913, Australia; University of Western Australia, School of Earth Sciences, 35 Stirling Hwy, Crawley, WA, 6009, Australia
| | - Amitabha Mukhopadhyay
- Water Research Center, Kuwait Institute for Scientific Research, P.O. Box 24885, 13109, Safat, Kuwait
| | - Anna H Kaksonen
- CSIRO Land and Water, Private Bag No. 5, Wembley, Western Australia, 6913, Australia; School of Biomedical Sciences, University of Western Australia, 35 Stirling Highway, Crawley, Western Australia, 6009, Australia
| | - Greg B Davis
- CSIRO Land and Water, Private Bag No. 5, Wembley, Western Australia, 6913, Australia
| | - Geoffrey J Puzon
- CSIRO Land and Water, Private Bag No. 5, Wembley, Western Australia, 6913, Australia.
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Sookhak Lari K, Davis GB, Rayner JL, Bastow TP, Puzon GJ. Natural source zone depletion of LNAPL: A critical review supporting modelling approaches. Water Res 2019; 157:630-646. [PMID: 31004979 DOI: 10.1016/j.watres.2019.04.001] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2018] [Revised: 03/23/2019] [Accepted: 04/01/2019] [Indexed: 06/09/2023]
Abstract
Natural source zone depletion (NSZD) of light non-aqueous phase liquids (LNAPLs) includes partitioning, transport and degradation of LNAPL components. NSZD is being considered as a site closure option during later stages of active remediation of LNAPL contaminated sites, and where LNAPL mass removal is limiting. To ensure NSZD meets compliance criteria and to design enhanced NSZD actions if required, residual risks posed by LNAPL and its long term behaviour require estimation. Prediction of long-term NSZD trends requires linking physicochemical partitioning and transport processes with bioprocesses at multiple scales within a modelling framework. Here we expand and build on the knowledge base of a recent review of NSZD, to establish the key processes and understanding required to model NSZD long term. We describe key challenges to our understanding, inclusive of the dominance of methanogenic or aerobic biodegradation processes, the potentially changeability of rates due to the weathering profile of LNAPL product types and ages, and linkages to underlying bioprocesses. We critically discuss different scales in subsurface simulation and modelling of NSZD. Focusing on processes at Darcy scale, 36 models addressing processes of importance to NSZD are investigated. We investigate the capabilities of models to accommodate more than 20 subsurface transport and transformation phenomena and present comparisons in several tables. We discuss the applicability of each group of models for specific site conditions.
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Affiliation(s)
- Kaveh Sookhak Lari
- CSIRO Land and Water, Private Bag No. 5, Wembley, WA, 6913, Australia; School of Engineering, Edith Cowan University, 270 Joondalup Drive, Joondalup, WA, 6027, Australia.
| | - Greg B Davis
- CSIRO Land and Water, Private Bag No. 5, Wembley, WA, 6913, Australia; School of Earth Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia
| | - John L Rayner
- CSIRO Land and Water, Private Bag No. 5, Wembley, WA, 6913, Australia
| | - Trevor P Bastow
- CSIRO Land and Water, Private Bag No. 5, Wembley, WA, 6913, Australia
| | - Geoffrey J Puzon
- CSIRO Land and Water, Private Bag No. 5, Wembley, WA, 6913, Australia
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Yu Z, Miller HC, Puzon GJ, Clowers BH. Application of untargeted metabolomics for the detection of pathogenic Naegleria fowleri in an operational drinking water distribution system. Water Res 2018; 145:678-686. [PMID: 30212806 DOI: 10.1016/j.watres.2018.09.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Revised: 08/23/2018] [Accepted: 09/02/2018] [Indexed: 06/08/2023]
Abstract
Found in drinking water distribution systems (DWDSs), swimming pools, and recreational waters, N. fowleri, is the causative agent of primary amoebic meningoencephalitis (PAM). Although cases of N. fowleri infections are rare, the fatality is comparatively high (>95%) and surveillance is essential to minimize N. fowleri infections. However, conventional N. fowleri detection methods are less satisfying owing to their time-consuming and lab intensive characteristics as well as the lack of the ability to determine viability. As a result, an alternative detection approach capable of determining viability as well as species identification is required to better ensure public health. Based on our previous research focusing on distinguishing laboratory cultured N. fowleri from N. lovaniensis and N. italica, this study applies untargeted metabolomics methods to field samples from operational DWDSs. A list of diagnostic features was found to preliminarily discriminate the N. fowleri positive from N. fowleri negative and N. lovaniensis positive field samples with satisfying predictive accuracy. The results outlined in this manuscript further validate and improve the metabolite-based N. fowleri detection approach, potentially aiding water utilities in the detection and management of N. fowleri in drinking water.
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Affiliation(s)
- Zhihao Yu
- Department of Chemistry, Washington State University, P.O. Box 644630, Pullman, WA, 99164, USA
| | - Haylea C Miller
- CSIRO Land and Water, Centre for Environment and Life Sciences, Private Bag No. 5, Wembley, Western Australia, 6913, Australia
| | - Geoffrey J Puzon
- CSIRO Land and Water, Centre for Environment and Life Sciences, Private Bag No. 5, Wembley, Western Australia, 6913, Australia
| | - Brian H Clowers
- Department of Chemistry, Washington State University, P.O. Box 644630, Pullman, WA, 99164, USA.
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9
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Miller HC, Morgan MJ, Walsh T, Wylie JT, Kaksonen AH, Puzon GJ. Preferential feeding in Naegleria fowleri; intracellular bacteria isolated from amoebae in operational drinking water distribution systems. Water Res 2018; 141:126-134. [PMID: 29783165 DOI: 10.1016/j.watres.2018.05.004] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2018] [Revised: 05/04/2018] [Accepted: 05/04/2018] [Indexed: 06/08/2023]
Abstract
The amoeba Naegleria fowleri is the causative agent of the highly fatal disease, primary amoebic meningoencephalitis, and estimated to cause 16 deaths per year in the United States alone. Colonisation of drinking water distribution systems (DWDSs) by the N. fowleri is a significant public health issue. Understanding the factors which enable this pathogen to colonise and thrive in DWDSs is critical for proper management. The microbial ecology within DWDSs may influence the ability of N. fowleri to colonise DWDSs by facilitating the availability of an appropriate food source. Using biofilm samples obtained from operational DWDSs, 16S rRNA amplicon metabarcoding was combined with genus-specific PCR and Sanger sequencing of intracellular associated bacteria from isolated amoeba and their parental biofilms to identify Meiothermus chliarophilus as a potential food source for N. fowleri. Meiothermus was confirmed as a food source for N. fowleri following successful serial culturing of axenic N. fowleri with M. chliarophilus or M. ruber as the sole food source. The ability to identify environmental and ecological conditions favourable to N. fowleri colonisation, including the detection of appropriate food sources such as Meiothermus, could provide water utilities with a predictive tool for managing N. fowleri colonisation within the DWDS.
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Affiliation(s)
- Haylea C Miller
- CSIRO Land and Water, Private Bag No.5, Wembley, Western Australia 6913, Australia; School of Biomedical Sciences, University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia
| | - Matthew J Morgan
- CSIRO Land and Water, Black Mountain Laboratories, P.O. Box 1700, Canberra, ACT, 2601, Australia
| | - Tom Walsh
- CSIRO Land and Water, Black Mountain Laboratories, P.O. Box 1700, Canberra, ACT, 2601, Australia
| | - Jason T Wylie
- CSIRO Land and Water, Private Bag No.5, Wembley, Western Australia 6913, Australia
| | - Anna H Kaksonen
- CSIRO Land and Water, Private Bag No.5, Wembley, Western Australia 6913, Australia; School of Biomedical Sciences, University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia
| | - Geoffrey J Puzon
- CSIRO Land and Water, Private Bag No.5, Wembley, Western Australia 6913, Australia.
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Bruckberger MC, Bastow TP, Morgan MJ, Gleeson D, Banning N, Davis G, Puzon GJ. Biodegradability of polar compounds formed from weathered diesel. Biodegradation 2018; 29:443-461. [DOI: 10.1007/s10532-018-9841-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Accepted: 06/27/2018] [Indexed: 10/28/2022]
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Miller HC, Wylie JT, Kaksonen AH, Sutton D, Puzon GJ. Competition between Naegleria fowleri and Free Living Amoeba Colonizing Laboratory Scale and Operational Drinking Water Distribution Systems. Environ Sci Technol 2018; 52:2549-2557. [PMID: 29390181 DOI: 10.1021/acs.est.7b05717] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Free living amoebae (FLA), including pathogenic Naegleria fowleri, can colonize and grow within pipe wall biofilms of drinking water distribution systems (DWDSs). Studies on the interactions between various FLA species in biofilms are limited. Understanding the interaction between FLA and the broader biofilm ecology could help better predict DWDS susceptibility to N. fowleri colonization. The aim of this study was to determine if N. fowleri and other FLAs ( Naegleria, Vermamoeba, Willaertia, and Vahlkampfia spp.) cocolonize DWDS biofilm. FLAs commonly isolated from DWDSs ( N. fowleri, V. vermiformis, and N. lovaniensis) were introduced into laboratory-scale biomonitors to determine the impact of these amoebae on N. fowleri's presence and viability. Over 18 months, a single viable amoebae ( N. fowleri, N. lovaniensis, or V. vermiformis) was detected in each biofilm sample, with the exception of N. lovaniensis and N. fowleri, which briefly cocolonized biofilm following their coinoculation. The analysis of biofilm and bulk water samples from operational DWDSs revealed a similar lack of cocolonization with a single FLA detected in 99% ( n = 242) of samples. Interestingly, various Naegleria spp. did colonize the same DWDS locations but at different times. This knowledge furthers the understanding of ecological factors which enable N. fowleri to colonize and survive within operational DWDSs and could aid water utilities to control its occurrence.
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Affiliation(s)
- Haylea C Miller
- CSIRO Land and Water , Private Bag No. 5 , Wembley , Western Australia 6913 , Australia
- School of Biomedical Sciences , University of Western Australia , 35 Stirling Highway , Crawley , Western Australia 6009 , Australia
| | - Jason T Wylie
- CSIRO Land and Water , Private Bag No. 5 , Wembley , Western Australia 6913 , Australia
| | - Anna H Kaksonen
- CSIRO Land and Water , Private Bag No. 5 , Wembley , Western Australia 6913 , Australia
- School of Biomedical Sciences , University of Western Australia , 35 Stirling Highway , Crawley , Western Australia 6009 , Australia
| | - David Sutton
- School of Biomedical Sciences , University of Western Australia , 35 Stirling Highway , Crawley , Western Australia 6009 , Australia
| | - Geoffrey J Puzon
- CSIRO Land and Water , Private Bag No. 5 , Wembley , Western Australia 6913 , Australia
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Yu Z, Miller HC, Puzon GJ, Clowers BH. Development of Untargeted Metabolomics Methods for the Rapid Detection of Pathogenic Naegleria fowleri. Environ Sci Technol 2017; 51:4210-4219. [PMID: 28290675 DOI: 10.1021/acs.est.6b05969] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Despite comparatively low levels of infection, primary amoebic meningoencephalitis (PAM) induced by Naegleria fowleri is extremely lethal, with mortality rates above 95%. As a thermophile, this organism is often found in moderate-to-warm climates and has the potential to colonize drinking water distribution systems (DWDSs). Current detection approaches require days to obtain results, whereas swift corrective action can maximize the benefit of public health. Presently, there is little information regarding the underlying in situ metabolism for this amoeba but the potential exists to exploit differentially expressed metabolic signatures as a rapid detection technique. This research outlines the biochemical profiles of selected pathogenic and nonpathogenic Naegleria in vitro using an untargeted metabolomics approach to identify a panel of diagnostically meaningful compounds that may enable rapid detection of viable pathogenic N. fowleri and augment results from traditional monitoring approaches.
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Affiliation(s)
- Zhihao Yu
- Department of Chemistry, Washington State University , P.O. Box 644630, Pullman, Washington 99164, United States
| | - Haylea C Miller
- CSIRO Land and Water, Centre for Environment and Life Sciences , Private Bag No. 5, Wembley, Western Australia 6913, Australia
| | - Geoffrey J Puzon
- CSIRO Land and Water, Centre for Environment and Life Sciences , Private Bag No. 5, Wembley, Western Australia 6913, Australia
| | - Brian H Clowers
- Department of Chemistry, Washington State University , P.O. Box 644630, Pullman, Washington 99164, United States
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Miller HC, Morgan MJ, Wylie JT, Kaksonen AH, Sutton D, Braun K, Puzon GJ. Elimination of Naegleria fowleri from bulk water and biofilm in an operational drinking water distribution system. Water Res 2017; 110:15-26. [PMID: 27974249 DOI: 10.1016/j.watres.2016.11.061] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2016] [Revised: 10/07/2016] [Accepted: 11/25/2016] [Indexed: 06/06/2023]
Abstract
Global incidence of primary amoebic meningoencephalitis cases associated with domestic drinking water is increasing. The need for understanding disinfectant regimes capable of eliminating the causative microorganism, Naegleria fowleri, from bulk water and pipe wall biofilms is critical. This field study demonstrated the successful elimination of N. fowleri from the bulk water and pipe wall biofilm of a persistently colonised operational drinking water distribution system (DWDS), and the prevention of further re-colonisation. A new chlorination unit was installed along the pipe line to boost the free chlorine residual to combat the persistence of N. fowleri. Biofilm and bulk water were monitored prior to and after re-chlorination (RCl), pre-rechlorination (pre-RCl) and post-rechlorination (post-RCl), respectively, for one year. A constant free chlorine concentration of > 1 mg/L resulted in the elimination of N. fowleri from both the bulk water and biofilm at the post-RCl site. Other amoeba species were detected during the first two months of chlorination, but all amoebae were eliminated from both the bulk water and biofilm at post-RCl after 60 days of chlorination with free chlorine concentrations > 1 mg/L. In addition, a dynamic change in the biofilm community composition and a four log reduction in biofilm cell density occurred post-RCl. The pre-RCl site continued to be seasonally colonised by N. fowleri, but the constant free chlorine residual of > 1 mg/L prevented N. fowleri from recolonising the bulk and pipe wall biofilm at the post-RCl site. To our knowledge, this is the first study to demonstrate successful removal of N. fowleri from both the bulk and pipe wall biofilm and prevention of re-colonisation of N. fowleri in an operational DWDS. The findings of this study are of importance to water utilities in addressing the presence of N. fowleri and other amoeba in susceptible DWDSs.
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Affiliation(s)
- Haylea C Miller
- CSIRO Land and Water, Private Bag No.5, Wembley, Western Australia 6913, Australia; School of Pathology and Laboratory Medicine, University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia
| | - Matthew J Morgan
- CSIRO Land and Water, Black Mountain Laboratories, P.O. Box 1700, Canberra, ACT 2601, Australia
| | - Jason T Wylie
- CSIRO Land and Water, Private Bag No.5, Wembley, Western Australia 6913, Australia
| | - Anna H Kaksonen
- CSIRO Land and Water, Private Bag No.5, Wembley, Western Australia 6913, Australia; School of Pathology and Laboratory Medicine, University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia
| | - David Sutton
- School of Pathology and Laboratory Medicine, University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia
| | - Kalan Braun
- Water Corporation of Western Australia, 629 Newcastle Street, Leederville, Western Australia 6007, Australia
| | - Geoffrey J Puzon
- CSIRO Land and Water, Private Bag No.5, Wembley, Western Australia 6913, Australia.
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Puzon GJ, Wylie JT, Walsh T, Braun K, Morgan MJ. Comparison of biofilm ecology supporting growth of individual Naegleria species in a drinking water distribution system. FEMS Microbiol Ecol 2017; 93:3044201. [DOI: 10.1093/femsec/fix017] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2016] [Accepted: 02/20/2017] [Indexed: 01/06/2023] Open
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Morgan MJ, Halstrom S, Wylie JT, Walsh T, Kaksonen AH, Sutton D, Braun K, Puzon GJ. Characterization of a Drinking Water Distribution Pipeline Terminally Colonized by Naegleria fowleri. Environ Sci Technol 2016; 50:2890-2898. [PMID: 26853055 DOI: 10.1021/acs.est.5b05657] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Free-living amoebae, such as Naegleria fowleri, Acanthamoeba spp., and Vermamoeba spp., have been identified as organisms of concern due to their role as hosts for pathogenic bacteria and as agents of human disease. In particular, N. fowleri is known to cause the disease primary amoebic meningoencephalitis (PAM) and can be found in drinking water systems in many countries. Understanding the temporal dynamics in relation to environmental and biological factors is vital for developing management tools for mitigating the risks of PAM. Characterizing drinking water systems in Western Australia with a combination of physical, chemical and biological measurements over the course of a year showed a close association of N. fowleri with free chlorine and distance from treatment over the course of a year. This information can be used to help design optimal management strategies for the control of N. fowleri in drinking-water-distribution systems.
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Affiliation(s)
- Matthew J Morgan
- CSIRO Land and Water , Black Mountain Laboratories, P.O. Box 1700, Canberra, ACT, 2601, Australia
| | - Samuel Halstrom
- CSIRO Land and Water , Centre for Environment and Life Sciences, Private Bag No. 5, Wembley, Western Australia 6913, Australia
- School of Pathology and Laboratory Medicine and Oceans Institute, University of Western Australia , 35 Stirling Highway, Crawley, Western Australia 6009, Australia
| | - Jason T Wylie
- CSIRO Land and Water , Centre for Environment and Life Sciences, Private Bag No. 5, Wembley, Western Australia 6913, Australia
| | - Tom Walsh
- CSIRO Land and Water , Black Mountain Laboratories, P.O. Box 1700, Canberra, ACT, 2601, Australia
| | - Anna H Kaksonen
- CSIRO Land and Water , Centre for Environment and Life Sciences, Private Bag No. 5, Wembley, Western Australia 6913, Australia
- School of Pathology and Laboratory Medicine and Oceans Institute, University of Western Australia , 35 Stirling Highway, Crawley, Western Australia 6009, Australia
| | - David Sutton
- School of Pathology and Laboratory Medicine and Oceans Institute, University of Western Australia , 35 Stirling Highway, Crawley, Western Australia 6009, Australia
| | - Kalan Braun
- Water Corporation of Western Australia , 629 Newcastle Street, Leederville, Western Australia 6007, Australia
| | - Geoffrey J Puzon
- CSIRO Land and Water , Centre for Environment and Life Sciences, Private Bag No. 5, Wembley, Western Australia 6913, Australia
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Miller HC, Wylie J, Dejean G, Kaksonen AH, Sutton D, Braun K, Puzon GJ. Reduced Efficiency of Chlorine Disinfection of Naegleria fowleri in a Drinking Water Distribution Biofilm. Environ Sci Technol 2015; 49:11125-11131. [PMID: 26287820 DOI: 10.1021/acs.est.5b02947] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Naegleria fowleri associated with biofilm and biological demand water (organic matter suspended in water that consumes disinfectants) sourced from operational drinking water distribution systems (DWDSs) had significantly increased resistance to chlorine disinfection. N. fowleri survived intermittent chlorine dosing of 0.6 mg/L for 7 days in a mixed biofilm from field and laboratory-cultured Escherichia coli strains. However, N. fowleri associated with an attached drinking water distribution biofilm survived more than 30 times (20 mg/L for 3 h) the recommended concentration of chlorine for drinking water. N. fowleri showed considerably more resistance to chlorine when associated with a real field biofilm compared to the mixed laboratory biofilm. This increased resistance is likely due to not only the consumption of disinfectants by the biofilm and the reduced disinfectant penetration into the biofilm but also the composition and microbial community of the biofilm itself. The increased diversity of the field biofilm community likely increased N. fowleri's resistance to chlorine disinfection compared to that of the laboratory-cultured biofilm. Previous research has been conducted in only laboratory scale models of DWDSs and laboratory-cultured biofilms. To the best of our knowledge, this is the first study demonstrating how N. fowleri can persist in a field drinking water distribution biofilm despite chlorination.
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Affiliation(s)
- Haylea C Miller
- Microbiology and Immunology, School of Pathology and Laboratory Medicine, University of Western Australia , 35 Stirling Highway, Crawley, Western Australia 6009, Australia
- Water for a Healthy Country Flagship, Centre for Environment and Life Sciences, CSIRO Land and Water, Private Bag No. 5, Wembley, Western Australia 6913, Australia
| | - Jason Wylie
- Water for a Healthy Country Flagship, Centre for Environment and Life Sciences, CSIRO Land and Water, Private Bag No. 5, Wembley, Western Australia 6913, Australia
| | - Guillaume Dejean
- Water for a Healthy Country Flagship, Centre for Environment and Life Sciences, CSIRO Land and Water, Private Bag No. 5, Wembley, Western Australia 6913, Australia
- Pierre Gauthier Street, 33320 Eysines, France
| | - Anna H Kaksonen
- Water for a Healthy Country Flagship, Centre for Environment and Life Sciences, CSIRO Land and Water, Private Bag No. 5, Wembley, Western Australia 6913, Australia
- School of Pathology and Laboratory Medicine and Oceans Institute, University of Western Australia , 35 Stirling Highway, Crawley, Western Australia 6009, Australia
| | - David Sutton
- School of Pathology and Laboratory Medicine and Oceans Institute, University of Western Australia , 35 Stirling Highway, Crawley, Western Australia 6009, Australia
| | - Kalan Braun
- Water Corporation of Western Australia , 629 Newcastle Street, Leederville, Western Australia 6007, Australia
| | - Geoffrey J Puzon
- Water for a Healthy Country Flagship, Centre for Environment and Life Sciences, CSIRO Land and Water, Private Bag No. 5, Wembley, Western Australia 6913, Australia
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Puzon GJ, Lancaster JA, Wylie JT, Plumb IJ. Rapid detection of Naegleria fowleri in water distribution pipeline biofilms and drinking water samples. Environ Sci Technol 2009; 43:6691-6696. [PMID: 19764236 DOI: 10.1021/es900432m] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Rapid detection of pathogenic Naegleria fowler in water distribution networks is critical for water utilities. Current detection methods rely on sampling drinking water followed by culturing and molecular identification of purified strains. This culture-based method takes an extended amount of time (days), detects both nonpathogenic and pathogenic species, and does not account for N. fowleri cells associated with pipe wall biofilms. In this study, a total DNA extraction technique coupled with a real-time PCR method using primers specific for N. fowleri was developed and validated. The method readily detected N. fowleri without preculturing with the lowest detection limit for N. fowleri cells spiked in biofilm being one cell (66% detection rate) and five cells (100% detection rate). For drinking water, the detection limit was five cells (66% detection rate) and 10 cells (100% detection rate). By comparison, culture-based methods were less sensitive for detection of cells spiked into both biofilm (66% detection for <10 cells) and drinking water (0% detection for <10 cells). In mixed cultures of N. fowleri and nonpathogenic Naegleria, the method identified N. fowleri in 100% of all replicates, whereastests with the current consensus primers detected N. fowleri in only 5% of all replicates. Application of the new method to drinking water and pipe wall biofilm samples obtained from a distribution network enabled the detection of N. fowleri in under 6 h, versus 3+ daysforthe culture based method. Further, comparison of the real-time PCR data from the field samples and the standard curves enabled an approximation of N. fowleri cells in the biofilm and drinking water. The use of such a method will further aid water utilities in detecting and managing the persistence of N. fowleri in water distribution networks.
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Affiliation(s)
- Geoffrey J Puzon
- Water for a Healthy Country Flagship, Centre for Environment and Life Sciences, CSIRO Land and Water, Private Bag No.5, Wembley, Western Australia 6913, Australia.
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Puzon GJ, Tokala RK, Zhang H, Yonge D, Peyton BM, Xun L. Mobility and recalcitrance of organo-chromium(III) complexes. Chemosphere 2008; 70:2054-2059. [PMID: 17959226 DOI: 10.1016/j.chemosphere.2007.09.010] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2007] [Revised: 09/05/2007] [Accepted: 09/10/2007] [Indexed: 05/25/2023]
Abstract
Hexavalent chromium [Cr(VI)] is a major industrial pollutant. Bioremediation of Cr(VI) to Cr(III) is a viable clean-up approach. However, Cr(VI) bioreduction also produces soluble organo-Cr(III) complexes, and little is known about their behavior in the environment. When tested with soil columns, citrate-Cr(III) showed little sorption to soil; malate-Cr(III) had limited partitioning with soil; and histidine-Cr(III) exhibited significant interaction with soil. It appears that the mobility varies depending on the organic ligand. Further, Ralstonia eutropha JMP 134 and Pseudomonas aeruginosa pAO1 readily degraded malate, citrate, and histidine, but not the corresponding organo-Cr(III) complexes. The recalcitrance is not due to toxicity, but the complexes are likely to cause hindrance to enzymes, as malate dehydrogenase and amino acid oxidase could not use malate-Cr(III) and histidine-Cr(III), respectively. The data are in agreement with the reports of soluble organo-Cr(III) complexes in the environment.
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Affiliation(s)
- Geoffrey J Puzon
- School of Molecular Biosciences, Washington State University, Pullman, WA 99164, United States
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Puzon GJ, Huang Y, Dohnalkova A, Xun L. Isolation and characterization of an NAD+-degrading bacterium PTX1 and its role in chromium biogeochemical cycle. Biodegradation 2007; 19:417-24. [PMID: 17701280 DOI: 10.1007/s10532-007-9147-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2007] [Accepted: 07/30/2007] [Indexed: 10/23/2022]
Abstract
Microorganisms can reduce toxic chromate to less toxic trivalent chromium [Cr(III)]. Besides Cr(OH)(3) precipitates, some soluble organo-Cr(III) complexes are readily formed upon microbial, enzymatic, and chemical reduction of chromate. However, the biotransformation of the organo-Cr(III) complexes has not been characterized. We have previously reported the formation of a nicotinamide adenine dinucleotide (NAD(+))-Cr(III) complex after enzymatic reduction of chromate. Although the NAD(+)-Cr(III) complex was stable under sterile conditions, microbial cells were identified as precipitates in a non-sterile NAD(+)-Cr(III) solution after extended incubation. The most dominant bacterium PTX1 was isolated and assigned to Leifsonia genus by phylogenetic analysis of 16S rRNA gene sequence. PTX1 grew slowly on NAD(+) with a doubling time of 17 h, and even more slowly on the NAD(+)-Cr(III) complex with an estimated doubling time of 35 days. The slow growth suggests that PTX1 passively grew on trace NAD(+) dissociated from the NAD(+)-Cr(III) complex, facilitating further dissociation of the complex and formation of Cr(III) precipitates. Thus, organo-Cr(III) complexes might be an intrinsic link of the chromium biogeochemical cycle; they can be produced during chromate reduction and then further mineralized by microorganisms.
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Affiliation(s)
- Geoffrey J Puzon
- School of Molecular Biosciences, Washington State University, Abelson Hall 301, Pullman, WA 99164-4234, USA
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Puzon GJ, Roberts AG, Kramer DM, Xun L. Formation of soluble organo-chromium(III) complexes after chromate reduction in the presence of cellular organics. Environ Sci Technol 2005; 39:2811-7. [PMID: 15884380 DOI: 10.1021/es048967g] [Citation(s) in RCA: 124] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Microbial reduction of hexavalent chromium [Cr(VI)] to trivalent chromium [Cr(III)] has been investigated as a method for bioremediation of Cr(VI) contaminated environments. The produced Cr(III) is thought to be insoluble Cr(OH)3; however, recent reports suggested a more complex fate of Cr(III). A bacterial enzyme system, using NADH as the reductant, converts Cr(VI)to a soluble NAD+-Cr(III) complex, and cytochrome c-mediated Cr(VI) reduction produces cytochrome c-Cr(III) adducts. In this study, Cr(VI) reduction in the presence of cellular organic metabolites formed both soluble and insoluble organo-Cr(III) end-products. Several soluble end-products were characterized by absorbance spectroscopy and electron paramagnetic resonance spectrometry as organo-Cr(III) complexes, similar to the known ascorbate-Cr(III) complex. The complexes remained soluble and stable upon dialysis against distilled H20 and over a broad pH range. The ready formation of stable organo-Cr(III) complexes suggests that organo-Cr(III) complexes are rather common, likely representing an integral part of the natural cycling of chromium. Thus, organo-Cr(III) complexes may account for the mobile form of Cr(II) detected in the environment.
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Affiliation(s)
- Geoffrey J Puzon
- School of Molecular Biosciences, Center for Multiphase Environmental Research, and Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164, USA
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Puzon GJ, Petersen JN, Roberts AG, Kramer DM, Xun L. A bacterial flavin reductase system reduces chromate to a soluble chromium(III)-NAD(+) complex. Biochem Biophys Res Commun 2002; 294:76-81. [PMID: 12054743 DOI: 10.1016/s0006-291x(02)00438-2] [Citation(s) in RCA: 101] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Biological reduction of carcinogenic chromate has been extensively studied in eukaryotic cells partly because the reduction produces stable chromium(III)-DNA adducts, which are mutagenic. Microbial reduction of chromate has been studied for bioremediation purposes, but little is known about the reduction mechanism. In eukaryotic cells chromate is mainly reduced non-enzymatically by ascorbate, which is usually absent in bacterial cells. We have characterized the reduction of chromate by a flavin reductase (Fre) from Escherichia coli with flavins. The Fre-flavin system rapidly reduced chromate, whereas chemical reduction by NADH and glutathione was very slow. Thus, enzymatic chromate reduction is likely the dominant mechanism in bacterial cells. Furthermore, the end-product was a soluble and stable Cr(III)-NAD(+) complex, instead of Cr(III) precipitate. Since intracellularly generated Cr(III) forms adducts with DNA, protein, glutathione, and ascorbate in eukaryotic cells, we suggest that the produced Cr(III) is primarily complexed to NAD(+), DNA, and other cellular components inside bacteria.
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Affiliation(s)
- Geoffrey J Puzon
- School of Molecular Biosciences, Washington State University, Pullman, WA 99164-4234, USA
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Garvis SG, Puzon GJ, Konkel ME. Cloning, sequencing, and expression of a Campylobacter jejuni periplasmic binding protein (P29) involved in histidine transport. Adv Exp Med Biol 1997; 412:263-4. [PMID: 9192026 DOI: 10.1007/978-1-4899-1828-4_42] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- S G Garvis
- Washington State University, Department of Microbiology, Pullman 99164-4233, USA
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Abstract
Campylobacter jejuni, a gram-negative, microaerophilic, spiral bacterium, is a common cause of human gastrointestinal disease. Although investigators commonly use C. jejuni glycine-hydrochloride extracts in assays to determine the products that promote the binding of the organism to eukaryotic cells, the proteins contained within these extracts remain ill defined. Characterization of these proteins will provide a better understanding of C. jejuni gene regulation and organization. An antiserum was raised against a C. jejuni 29-kDa gel-purified protein detected in glycine-hydrochloride extracts. This antiserum was used to screen an expression library of C. jejuni. A reactive clone that contained an open reading frame of 256 amino acids was identified. The cloned gene was transcribed and translated, and the product was exported to the periplasmic space in Escherichia coli XL1-Blue. The translated C. jejuni product, designated P29, exhibited significant similarity to the histidine and lysine-arginine-ornithine periplasmic binding proteins (HisJ and LAO, respectively) of Salmonella typhimurium. The C. jejuni gene encoding the P29 protein complemented an S. typhimurium HisJ mutant but not a LAO mutant when provided in trans. These data suggest that the C. jejuni gene encoding the P29 protein is a homolog of the S. typhimurium hisJ gene.
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Affiliation(s)
- S G Garvis
- Department of Microbiology, Washington State University, Pullman 99164, USA
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