Tracing 2,4-D metabolism in Cupriavidus necator JMP134 with 13C-labelling technique and fatty acid profiling

The use of stable isotope probing of fatty acid methyl esters (FAME-SIP) is a powerful tool to study the microorganisms involved in xenobiotic biodegradation in soil. Nevertheless, it is important to determine how representative these molecules are of microorganisms both qualitatively and quantitatively. Using Cupriavidus necator JMP134 as a simple experimental model, we showed that the (13)C-labelling technique can be used both at a global (here defined as cellular, medium and CO(2)) and molecular level to study the metabolism of 2,4-Dichlorophenoxyacetic acid (2,4-D). Although isotopic fractionation among substrate, biomass and FAME were observed, this technique could be used when using a highly (13)C-labelled substrate. Global (13)C analyses gave similar results to those obtained with traditional (14)C-labelling methods. After 10 days of incubation 59% of ring-C was mineralized and about 30% remained in the liquid medium. A maximum of 11% was incorporated into the biomass after 3 days. The assimilation yield of chain-C into the biomass was about half that of ring-C, suggesting a preferential use of chain-C for energy acquisition. Molecular analysis of the lipid fraction evidenced that the incorporation of the labelled 2,4-D did not correspond to a bioaccumulation of pesticide residues but to the metabolism of the 2,4-D carbons for FAME synthesis. Provided the labelling is located on the benzenic ring, the assessment of (13)C-FAME is a robust method to quantify the incorporation of (13)C into the whole microbial biomass. However, the variability of the (13)C incorporation among FAME due to physiological processes has to be considered in complex biological systems. The coupling of bulk and molecular studies with a simple model as C. necator JMP134 is a good approach for testing FAME-SIP.

Elemental and molecular evidence of soot- and char-derived black carbon inputs to New York City's atmosphere during the 20th century

Soot black carbon (here expressed as GBC) is present in sediments of Central Park and Prospect Park Lakes, New York City (NYC), and peaks in the middle of the 20th Century at the highest values (1-3% dry weight) ever reported in urban lakes. During that period (approximately 1940-1970), the GBC represents up to 28% of the total organic carbon (OC). Radionuclide-normalized whole core inventories of accumulated GBC are similar in the two lakes which are separated by approximately 15 km, suggesting that emissions of fine soot particles may have accumulated homogeneously over at least the urban center of NYC. The distribution of polycyclic aromatic hydrocarbons (PAHs) in the sediments is decoupled from that of GBC. The highest levels of total PAHs correspond to peak coal use for space heating in NYC in the early 1900s. In contrast, GBC concentrations were highest in the mid 1900s, a period when oil combustion dominated local fossil fuel use and incineration of municipal solid waste (MSW) was common practice in NYC. Decreases in GBC levels observed in more recently deposited sediments are consistent with improvements in particle emissions control systems. Non-soot BC (char) was identified by a high carbon to nitrogen (C/N) ratio that persisted after correction for GBC. This likely tracer of MSW incineration was estimated to contribute an additional '35% of total organic carbon found in the sediments deposited during the peak period of combustion. The temporal trends of soot-BC observed in our lake cores do not agree with published historical reconstructions based on fuel consumption and estimated emission factors.