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Garrabou J, Gómez‐Gras D, Medrano A, Cerrano C, Ponti M, Schlegel R, Bensoussan N, Turicchia E, Sini M, Gerovasileiou V, Teixido N, Mirasole A, Tamburello L, Cebrian E, Rilov G, Ledoux J, Souissi JB, Khamassi F, Ghanem R, Benabdi M, Grimes S, Ocaña O, Bazairi H, Hereu B, Linares C, Kersting DK, la Rovira G, Ortega J, Casals D, Pagès‐Escolà M, Margarit N, Capdevila P, Verdura J, Ramos A, Izquierdo A, Barbera C, Rubio‐Portillo E, Anton I, López‐Sendino P, Díaz D, Vázquez‐Luis M, Duarte C, Marbà N, Aspillaga E, Espinosa F, Grech D, Guala I, Azzurro E, Farina S, Cristina Gambi M, Chimienti G, Montefalcone M, Azzola A, Mantas TP, Fraschetti S, Ceccherelli G, Kipson S, Bakran‐Petricioli T, Petricioli D, Jimenez C, Katsanevakis S, Kizilkaya IT, Kizilkaya Z, Sartoretto S, Elodie R, Ruitton S, Comeau S, Gattuso J, Harmelin J. Marine heatwaves drive recurrent mass mortalities in the Mediterranean Sea. Glob Chang Biol 2022; 28:5708-5725. [PMID: 35848527 PMCID: PMC9543131 DOI: 10.1111/gcb.16301] [Citation(s) in RCA: 55] [Impact Index Per Article: 27.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 05/10/2022] [Accepted: 05/15/2022] [Indexed: 05/12/2023]
Abstract
Climate change is causing an increase in the frequency and intensity of marine heatwaves (MHWs) and mass mortality events (MMEs) of marine organisms are one of their main ecological impacts. Here, we show that during the 2015-2019 period, the Mediterranean Sea has experienced exceptional thermal conditions resulting in the onset of five consecutive years of widespread MMEs across the basin. These MMEs affected thousands of kilometers of coastline from the surface to 45 m, across a range of marine habitats and taxa (50 taxa across 8 phyla). Significant relationships were found between the incidence of MMEs and the heat exposure associated with MHWs observed both at the surface and across depths. Our findings reveal that the Mediterranean Sea is experiencing an acceleration of the ecological impacts of MHWs which poses an unprecedented threat to its ecosystems' health and functioning. Overall, we show that increasing the resolution of empirical observation is critical to enhancing our ability to more effectively understand and manage the consequences of climate change.
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Affiliation(s)
- Joaquim Garrabou
- Institut de Ciències del Mar‐CSICBarcelonaSpain
- Université de Toulon, CNRS, IRD, MIOAix Marseille UnivMarseilleFrance
| | - Daniel Gómez‐Gras
- Institut de Ciències del Mar‐CSICBarcelonaSpain
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Alba Medrano
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Carlo Cerrano
- Dept of Life and Environmental SciencesPolytechnic University of MarcheAnconaItaly
- Fano Marine CentreFanoItaly
| | - Massimo Ponti
- Department of Biological, Geological and Environmental SciencesUniversity of BolognaRavennaItaly
- CoNISMaRomeItaly
| | - Robert Schlegel
- Laboratoire d'Océanographie de VillefrancheSorbonne, Université, CNRSVillefranche‐sur‐merFrance
| | - Nathaniel Bensoussan
- Institut de Ciències del Mar‐CSICBarcelonaSpain
- Université de Toulon, CNRS, IRD, MIOAix Marseille UnivMarseilleFrance
| | - Eva Turicchia
- Department of Biological, Geological and Environmental SciencesUniversity of BolognaRavennaItaly
- CoNISMaRomeItaly
| | - Maria Sini
- Department of Marine SciencesUniversity of the AegeanMytileneGreece
| | - Vasilis Gerovasileiou
- Department of Environment, Faculty of EnvironmentIonian UniversityZakynthosGreece
- Hellenic Centre for Marine Research (HCMR)Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC)HeraklionGreece
| | - Nuria Teixido
- Laboratoire d'Océanographie de VillefrancheSorbonne, Université, CNRSVillefranche‐sur‐merFrance
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine EcologyIschia Marine CentreNaplesItaly
| | - Alice Mirasole
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine EcologyIschia Marine CentreNaplesItaly
| | - Laura Tamburello
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine EcologyIschia Marine CentreNaplesItaly
| | - Emma Cebrian
- Centre d'Estudis Avançats de Blanes (CEAB‐CSIC)GironaSpain
| | - Gil Rilov
- National Institute of OceanographyIsrael Oceanographic and Limnological Research (IOLR)HaifaIsrael
| | - Jean‐Baptiste Ledoux
- Institut de Ciències del Mar‐CSICBarcelonaSpain
- CIIMAR‐Interdisciplinary Centre of Marine and Environmental ResearchUniversity of PortoMatosinhosPortugal
| | - Jamila Ben Souissi
- National Agronomic Institute of TunisiaTunis University of CarthageTunisTunisia
- Biodiversity, Biotechnology and Climate Change Laboratory‐LR11ES09University of Tunis El ManarTunisTunisia
| | - Faten Khamassi
- National Agronomic Institute of TunisiaTunis University of CarthageTunisTunisia
| | - Raouia Ghanem
- Biodiversity, Biotechnology and Climate Change Laboratory‐LR11ES09University of Tunis El ManarTunisTunisia
| | | | - Samir Grimes
- Ecole Nationale Supérieure des Sciences de la Mer et de l'Aménagement (ENSSMAL)AlgerAlgeria
| | | | - Hocein Bazairi
- Laboratory 'Biodiversity, Ecology and Genome', Faculty of SciencesMohamed V University in RabatRabatMorocco
| | - Bernat Hereu
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Cristina Linares
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Diego Kurt Kersting
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Graciel la Rovira
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Júlia Ortega
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - David Casals
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Marta Pagès‐Escolà
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Núria Margarit
- Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBIO)Universitat de BarcelonaBarcelonaSpain
| | - Pol Capdevila
- School of Biological SciencesUniversity of BristolBristolUK
| | | | - Alfonso Ramos
- Departamento de Ciencias del Mar y Biología AplicadaUniversidad de AlicanteAlicanteSpain
| | | | - Carmen Barbera
- Departamento de Ciencias del Mar y Biología AplicadaUniversidad de AlicanteAlicanteSpain
| | | | | | | | - David Díaz
- Centro Oceanográfico de Baleares (IEO‐CSIC)Palma de MallorcaSpain
| | | | - Carlos Duarte
- Red Sea Research CenterKing Abudllah University of Science and TechnologyThuwalSaudi Arabia
- Institut Mediterrani d'Estudis AvançatsMallorcaSpain
| | - Nuria Marbà
- Institut Mediterrani d'Estudis AvançatsMallorcaSpain
| | | | - Free Espinosa
- Laboratorio de Biología MarinaUniversidad de SevillaSevillaSpain
| | | | - Ivan Guala
- IMC—International Marine CentreOristanoItaly
| | - Ernesto Azzurro
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine EcologyIschia Marine CentreNaplesItaly
- CNR‐IRBIM, NR‐IRBIM, National Research CouncilInstitute of Biological Resources and Marine BiotechnologiesAnconaItaly
| | - Simone Farina
- Stazione Zoologica Anton Dohrn, Deptartment of Integrative Marine EcologyGenoa Marine CentreGenoaItaly
| | | | - Giovanni Chimienti
- CoNISMaRomeItaly
- Department of BiologyUniversity of Bari Aldo MoroBariItaly
| | - Monica Montefalcone
- Department of Earth, Environment and Life SciencesUniversity of GenoaGenoaItaly
| | - Annalisa Azzola
- Department of Earth, Environment and Life SciencesUniversity of GenoaGenoaItaly
| | | | - Simonetta Fraschetti
- CoNISMaRomeItaly
- Department of BiologyUniversity of Naples Federico IINaplesItaly
| | | | - Silvija Kipson
- SEAFANZagrebCroatia
- Faculty of Science, Department of BiologyUniversity of ZagrebZagrebCroatia
| | | | - Donat Petricioli
- D.I.I.V. Ltd for Marine, Freshwater and Subterranean EcologySaliCroatia
| | - Carlos Jimenez
- Enalia Physis Environmental Research CentreNicosiaCyprus
- The Cyprus Institute Energy Environment and Water Research CenterAglantziaCyprus
| | | | | | | | | | | | - Sandrine Ruitton
- Université de Toulon, CNRS, IRD, MIOAix Marseille UnivMarseilleFrance
| | - Steeve Comeau
- Laboratoire d'Océanographie de VillefrancheSorbonne, Université, CNRSVillefranche‐sur‐merFrance
| | - Jean‐Pierre Gattuso
- Laboratoire d'Océanographie de VillefrancheSorbonne, Université, CNRSVillefranche‐sur‐merFrance
- Institute for Sustainable Development and International Relations. Sciences PoParisFrance
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Akgul R, Morgil H, Kizilkaya IT, Sarayloo E, Cevahir G, Akgul F, Kavakli IH. Transcriptomic and fatty acid analyses of Neochloris aquatica grown under different nitrogen concentration. Funct Integr Genomics 2022; 22:407-421. [PMID: 35286570 DOI: 10.1007/s10142-022-00838-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 02/25/2022] [Accepted: 02/28/2022] [Indexed: 11/28/2022]
Abstract
In this study, we characterized the fatty acid production in Neochloris aquatica at transcriptomics and biochemical levels under limiting, normal, and excess nitrate concentrations in different growth phases. At the stationary phase, N. aquatica mainly produced saturated fatty acids such as stearic acid under the limiting nitrate concentration, which is suitable for biodiesel production. However, it produced polyunsaturated fatty acids such as α-linolenic acid under the excess nitrate concentration, which has nutritional values as food supplements. In addition, RNA-seq was employed to identify genes and pathways that were being affected in N. aquatica for three growth phases in the presence of the different nitrate amounts. Genes that are responsible for the production of saturated fatty acids were upregulated in the cells grown under a limiting nitrogen amount while genes that are responsible for the production of polyunsaturated fatty acid were upregulated in the cells grown under excess nitrogen amount. Further analysis showed more genes differentially expressed (DEGs) at the logarithmic phase in all conditions while a relatively steady trend was observed during the transition from the logarithmic phase to the stationary phase under limiting and excess nitrogen. Our results provide a foundation for identifying developmentally important genes and understanding the biological processes in the different growth phases of the N. aquatica in terms of biomass and lipid production.
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Affiliation(s)
- Riza Akgul
- Burdur Food, Agriculture and Livestock Vocational High School, Mehmet Akif Ersoy University, Burdur, Turkey
| | - Hande Morgil
- Department of Biology, Istanbul University, Istanbul, Turkey.,Istanbul University Centre for Plant and Herbal Products Research-Development, 34126, Istanbul, Turkey
| | | | - Ehsan Sarayloo
- Department of Chemical and Biological Engineering, TUPRAS Energy Research Center, Koc University, Rumelifeneri Yolu, Sariyer, Istanbul, Turkey
| | - Gul Cevahir
- Department of Biology, Istanbul University, Istanbul, Turkey.,Istanbul University Centre for Plant and Herbal Products Research-Development, 34126, Istanbul, Turkey
| | - Fusun Akgul
- Department of Molecular Biology and Genetic, Faculty of Science and Arts, Mehmet Akif Ersoy University, Burdur, Turkey.
| | - Ibrahim Halil Kavakli
- Department of Chemical and Biological Engineering, TUPRAS Energy Research Center, Koc University, Rumelifeneri Yolu, Sariyer, Istanbul, Turkey. .,Department of Molecular Biology and Genetics, Koc University, Rumelifeneri Yolu, Sariyer, Istanbul, Turkey.
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Unubol N, Kizilkaya IT, Okullu SO, Koksalan K, Kocagoz T. Simple Identification of Mycobacterial Species by Sequence-Specific Multiple Polymerase Chain Reactions. Curr Microbiol 2019; 76:791-798. [PMID: 31073733 DOI: 10.1007/s00284-019-01661-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2018] [Accepted: 02/28/2019] [Indexed: 12/29/2022]
Abstract
Several species of mycobacteria cause infections in humans. Species identification of clinical isolates of mycobacteria is very important for the decision of treatment and in choosing the appropriate treatment regimen. We have developed a multiplex PCR method that can identify practically all known species of mycobacteria, by determination of single-nucleotide differences at a total of 13 different polymorphic regions in the genes of rRNA and hsp65, in four PCR mixes. To achieve this goal, single-nucleotide differences in these polymorphic regions were used to divide mycobacterial species into two groups, than four, eight, etc., in an algorithmic manner. It was sufficient to reach single species level by evaluating 13 polymorphic regions. Evaluation of the multiplex PCR patterns by observable real-time electrophoresis (ORTE) simplified species identification. This new method may enable easy, rapid, and cost-effective identification of all species of mycobacteria.
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Affiliation(s)
- Nihan Unubol
- Department of Medical Microbiology, Faculty of Medicine, Acibadem Mehmet Ali Aydınlar University, Istanbul, Turkey
- Department of Medical Biotechnology, Institute of Health Sciences, Acibadem Mehmet Ali Aydınlar University, Istanbul, Turkey
| | | | - Sinem Oktem Okullu
- Department of Medical Microbiology, Faculty of Medicine, Acibadem Mehmet Ali Aydınlar University, Istanbul, Turkey
- Department of Medical Biotechnology, Institute of Health Sciences, Acibadem Mehmet Ali Aydınlar University, Istanbul, Turkey
| | - Kaya Koksalan
- Aziz Sancar Institute of Experimental Medicine, Istanbul University, Istanbul, Turkey
| | - Tanil Kocagoz
- Department of Medical Microbiology, Faculty of Medicine, Acibadem Mehmet Ali Aydınlar University, Istanbul, Turkey.
- Department of Medical Biotechnology, Institute of Health Sciences, Acibadem Mehmet Ali Aydınlar University, Istanbul, Turkey.
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