Swift and NuSTAR observations of GW170817: Detection of a blue kilonova

With the first direct detection of merging black holes in 2015, the era of gravitational wave (GW) astrophysics began. A complete picture of compact object mergers, however, requires the detection of an electromagnetic (EM) counterpart. We report ultraviolet (UV) and x-ray observations by Swift and the Nuclear Spectroscopic Telescope Array of the EM counterpart of the binary neutron star merger GW170817. The bright, rapidly fading UV emission indicates a high mass (≈0.03 solar masses) wind-driven outflow with moderate electron fraction (Y_e ≈ 0.27). Combined with the x-ray limits, we favor an observer viewing angle of ≈30° away from the orbital rotation axis, which avoids both obscuration from the heaviest elements in the orbital plane and a direct view of any ultrarelativistic, highly collimated ejecta (a γ-ray burst afterglow).

A review of sampling designs for the measurement of soil organic carbon in Australian grazing lands

The accurate measurement of the soil organic carbon (SOC) stock in Australian grazing lands is important due to the major role that SOC plays in soil productivity and the potential influence of soil C cycling on Australia’s greenhouse gas emissions. However, the current sampling methodologies for SOC stock are varied and potentially conflicting. It was the objective of this paper to review the nature of, and reasons for, SOC variability; the sampling methodologies commonly used; and to identify knowledge gaps for SOC measurement in grazing lands. Soil C consists of a range of biological materials, in various SOC pools such as dissolved organic C, micro- and meso-fauna (microbial biomass), fungal hyphae and fresh plant residues in or on the soil (particulate organic C, light-fraction C), the products of decomposition (humus, slow pool C) and complexed organic C, and char and phytoliths (inert, passive or resistant C); and soil inorganic C (carbonates and bicarbonates). Microbial biomass and particulate or light-fraction organic C are most sensitive to management or land-use change; resistant organic C and soil carbonates are least sensitive. The SOC present at any location is influenced by a series of complex interactions between plant growth, climate, soil type or parent material, topography and site management. Because of this, SOC stock and SOC pools are highly variable on both spatial and temporal scales. This creates a challenge for efficient sampling. Sampling methods are predominantly based on design-based (classical) statistical techniques, crucial to which is a randomised sampling pattern that negates bias. Alternatively a model-based (geostatistical) analysis can be used, which does not require randomisation. Each approach is equally valid to characterise SOC in the rangelands. However, given that SOC reporting in the rangelands will almost certainly rely on average values for some aggregated scale (such as a paddock or property), we contend that the design-based approach might be preferred. We also challenge soil surveyors and their sponsors to realise that: (i) paired sites are the most efficient way of detecting a temporal change in SOC stock, but destructive sampling and cumulative measurement errors decrease our ability to detect change; (ii) due to (i), an efficient sampling scheme to estimate baseline status is not likely to be an efficient sampling scheme to estimate temporal change; (iii) samples should be collected as widely as possible within the area of interest; (iv) replicate of laboratory analyses is a critical step in being able to characterise temporal change. Sampling requirements for SOC stock in Australian grazing lands are yet to be explicitly quantified and an examination of a range of these ecosystems is required in order to assess the sampling densities and techniques necessary to detect specified changes in SOC stock and SOC pools. An examination of techniques that can help reduce sampling requirements (such as measurement of the SOC fractions that are most sensitive to management changes and/or measurement at specific times of the year – preferably before rapid plant growth – to decrease temporal variability), and new technologies for in situ SOC measurement is also required.

The association of GRB 060218 with a supernova and the evolution of the shock wave

Although the link between long gamma-ray bursts (GRBs) and supernovae has been established, hitherto there have been no observations of the beginning of a supernova explosion and its intimate link to a GRB. In particular, we do not know how the jet that defines a gamma-ray burst emerges from the star's surface, nor how a GRB progenitor explodes. Here we report observations of the relatively nearby GRB 060218 (ref. 5) and its connection to supernova SN 2006aj (ref. 6). In addition to the classical non-thermal emission, GRB 060218 shows a thermal component in its X-ray spectrum, which cools and shifts into the optical/ultraviolet band as time passes. We interpret these features as arising from the break-out of a shock wave driven by a mildly relativistic shell into the dense wind surrounding the progenitor. We have caught a supernova in the act of exploding, directly observing the shock break-out, which indicates that the GRB progenitor was a Wolf-Rayet star.

Bright X-ray Flares in Gamma-Ray Burst Afterglows

Gamma-ray burst (GRB) afterglows have provided important clues to the nature of these massive explosive events, providing direct information on the nearby environment and indirect information on the central engine that powers the burst. We report the discovery of two bright x-ray flares in GRB afterglows, including a giant flare comparable in total energy to the burst itself, each peaking minutes after the burst. These strong, rapid x-ray flares imply that the central engines of the bursts have long periods of activity, with strong internal shocks continuing for hundreds of seconds after the gamma-ray emission has ended.

An unexpectedly rapid decline in the X-ray afterglow emission of long γ-ray bursts

'Long' gamma-ray bursts (GRBs) are commonly accepted to originate in the explosion of particularly massive stars, which give rise to highly relativistic jets. Inhomogeneities in the expanding flow result in internal shock waves that are believed to produce the gamma-rays we see. As the jet travels further outward into the surrounding circumstellar medium, 'external' shocks create the afterglow emission seen in the X-ray, optical and radio bands. Here we report observations of the early phases of the X-ray emission of five GRBs. Their X-ray light curves are characterised by a surprisingly rapid fall-off for the first few hundred seconds, followed by a less rapid decline lasting several hours. This steep decline, together with detailed spectral properties of two particular bursts, shows that violent shock interactions take place in the early jet outflows.

Salmonella enterica serovar Pullorum persists in splenic macrophages and in the reproductive tract during persistent, disease-free carriage in chickens

Salmonella enterica serovar Pullorum is worldwide a poultry pathogen of considerable economic importance, particularly in those countries with a developing poultry industry. In addition to the characteristic high mortality rates among young chicks, one of the features of Salmonella serovar Pullorum infection is that it persists for long periods in convalescent chicks in the absence of clinical disease. This can lead to colonization of the reproductive tract of chickens and at sexual maturity can result in infected progeny through transovarian transmission to eggs. The sites of Salmonella serovar Pullorum persistence in convalescent birds are not known, and the mechanisms of persistence are not understood. Here we show that Salmonella serovar Pullorum can persist in both the spleen and the reproductive tract for over 40 weeks following experimental infection in chickens. During the period of sexual maturity, Salmonella serovar Pullorum colonized both the ovary and the oviduct of hens and led to 6% of laid eggs being infected by Salmonella serovar Pullorum. The colonization of several different sites of the reproductive tract suggests that Salmonella serovar Pullorum may employ more than one mechanism of egg infection. Persistence occurred despite a strong humoral response, suggesting an intracellular site of infection. By use of a Salmonella serovar Pullorum strain containing a plasmid stably expressing green fluorescent protein, we demonstrated that the main site of carriage in the spleen is within macrophages. This raises interesting questions about the biology of Salmonella serovar Pullorum, including why there is an increase in bacterial numbers when birds become sexually mature and in particular how Salmonella serovar Pullorum avoids clearance by macrophages and whether it modulates the immune system in other ways.

Salmonella enterica serovar Gallinarum requires the Salmonella pathogenicity island 2 type III secretion system but not the Salmonella pathogenicity island 1 type III secretion system for virulence in chickens

Salmonella enterica serovar Gallinarum is a host-specific serotype that causes the severe systemic disease fowl typhoid in domestic poultry and a narrow range of other avian species but rarely causes disease in mammalian hosts. Specificity of the disease is primarily at the level of the reticuloendothelial system, but few virulence factors have been described other than the requirement for an 85-kb virulence plasmid. In this work, by making functional mutations in the type III secretion systems (TTSS) encoded by Salmonella pathogenicity island 1 (SPI-1) and SPI-2, we investigated the role of these pathogenicity islands in interactions between Salmonella serovar Gallinarum and avian cells in vitro and the role of these pathogenicity islands in virulence in chickens. The SPI-1 mutant showed decreased invasiveness into avian cells in vitro but was unaffected in its ability to persist within chicken macrophages. In contrast the SPI-2 mutant was fully invasive in nonphagocytic cells but failed to persist in macrophages. In chicken infections the SPI-2 mutant was attenuated while the SPI-1 mutant showed full virulence. In oral infections the SPI-2 mutant was not observed in the spleen or liver, and following intravenous inoculation it was cleared rapidly from these sites. SPI-2 function is required by Salmonella serovar Gallinarum for virulence, primarily through promoting survival within macrophages allowing multiplication within the reticuloendothelial system, but this does not preclude the involvement of SPI-2 in uptake from the gut to the spleen and liver. SPI-1 appears to have little effect on virulence and survival of Salmonella serovar Gallinarum in the host.

The effects of early antibiotic treatment following diagnosis of mastitis detected by a change in the electrical conductivity of milk

Mastitis was induced experimentally by infusion of Streptococcus uberis or Staphylococcus aureus into the mammary glands of lactating dairy cows. Clinical mastitis was identified when clots appeared in foremilk (conventional diagnosis) or was predicted by changes in the electrical conductivity of foremilk (early diagnosis). The responses to intramammary antibiotic treatment that was initiated after early diagnosis of mastitis and after conventional diagnosis were compared. Early treatment significantly limited the severity of the disease and, in many cases, prevented the appearance of any visible signs of infection. Milk yield was less depressed, and the somatic cell count (SCC) was lower, when treatment was initiated earlier. The SCC of the quarter at the time mastitis was predicted was approximately 2 x 10(6) cells/ml for both pathogens, which was significantly less than when clots appeared at conventional diagnosis, approximately 4 x 10(6) and 12 x 10(6) cells/ml for Staph. aureus and Strep. uberis, respectively. The time required for SCC to recover to < 4 x 10(5) cells/ml was significantly less, approximately half, for both pathogens following early detection and early initiation of treatment. When treatment was administered in response to early detection, the bacteriological and clinical cure was almost complete, and the amount of antibiotic used was < or = 50% less. Obvious benefits for milk yield and quality and the health of the cow would result when changes in the electrical conductivity of milk are used to predict clinical mastitis and when treatment is initiated early.

Detection of clinical mastitis by changes in electrical conductivity of foremilk before visible changes in milk

Mastitis was induced by the direct infusion of Staphylococcus aureus or Streptococcus uberis into the mammary gland of lactating cows. Changes in electrical conductivity of foremilk indicated the establishment of bacteria, increased SCC, increased clotting of milk, and, hence, disease, in advance of visible changes in the milk that could be diagnosed by a herdsperson. Clinical mastitis was detectable by changes in electrical conductivity of foremilk, 90% of cases were detectable when clots first appeared in foremilk, and 55% of cases were detectable up to 2 milkings prior to the appearance of clots. All subclinical infections from Staph. aureus were detected, but subclinical infections from Strep. uberis were not detected. The results suggested that clinical mastitis caused by these two major pathogens could be detected earlier by measuring changes in electrical conductivity of milk than by waiting for a herdsperson to detect visible changes in milk. Earlier detection would permit earlier treatment. However, the handheld sensor used in this experiment is impractical for commercial application, and reliable automated sensors and decision-making algorithms are required.