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Cybularczyk-Cecotka M, Kamińska A, Jopek Z, Giedyk M. Light‐Induced Dealkylation of Benzamides in Aqueous Solution. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Martyna Cybularczyk-Cecotka
- Institute of Organic Chemistry Polish Academy of Sciences: Instytut Chemii Organicznej Polskiej Akademii Nauk Chemistry POLAND
| | - Agnieszka Kamińska
- Institute of Organic Chemistry Polish Academy of Sciences: Instytut Chemii Organicznej Polskiej Akademii Nauk Chemistry POLAND
| | - Zuzanna Jopek
- Institute of Organic Chemistry Polish Academy of Sciences: Instytut Chemii Organicznej Polskiej Akademii Nauk Chemistry POLAND
| | - Maciej Giedyk
- Polska Akademia Nauk Instytut Chemii Organicznej Chemistry Kasprzaka 44/52 01-224 Warsaw POLAND
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2
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Cybularczyk-Cecotka M, Predygier J, Crespi S, Szczepanik J, Giedyk M. Photocatalysis in Aqueous Micellar Media Enables Divergent C–H Arylation and N-Dealkylation of Benzamides. ACS Catal 2022. [DOI: 10.1021/acscatal.2c00468] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
| | - Jędrzej Predygier
- Institute of Organic Chemistry, Polish Academy of Sciences; Kasprzaka 44/52, 01-224 Warsaw, Poland
- Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland
| | - Stefano Crespi
- Department of Chemistry - Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden
| | - Joanna Szczepanik
- Institute of Organic Chemistry, Polish Academy of Sciences; Kasprzaka 44/52, 01-224 Warsaw, Poland
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, 00-664 Warsaw, Poland
| | - Maciej Giedyk
- Institute of Organic Chemistry, Polish Academy of Sciences; Kasprzaka 44/52, 01-224 Warsaw, Poland
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Potrząsaj A, Musiejuk M, Chaładaj W, Giedyk M, Gryko D. Cobalt Catalyst Determines Regioselectivity in Ring Opening of Epoxides with Aryl Halides. J Am Chem Soc 2021; 143:9368-9376. [PMID: 34081860 PMCID: PMC8297733 DOI: 10.1021/jacs.1c00659] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
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Ring-opening of epoxides
furnishing either linear or branched products
belongs to the group of classic transformations in organic synthesis.
However, the regioselective cross-electrophile coupling of aryl epoxides
with aryl halides still represents a key challenge. Herein, we report
that the vitamin B12/Ni dual-catalytic system allows for
the selective synthesis of linear products under blue-light irradiation,
thus complementing methodologies that give access to branched alcohols.
Experimental and theoretical studies corroborate the proposed mechanism
involving alkylcobalamin as an intermediate in this reaction.
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Affiliation(s)
- Aleksandra Potrząsaj
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Mateusz Musiejuk
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Wojciech Chaładaj
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Maciej Giedyk
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Dorota Gryko
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
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4
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Abstract
AbstractAlkyl halides are readily available starting materials for various synthetic transformations, including Minisci-type C–H functionalizations of hetarenes. The existing methods, however, often require harsh reaction conditions, such as the use of acids, sacrificial electron donors, or radical precursors in excess amounts. Here, we outline recent developments in this field and we highlight our group̓s efforts to achieve fully catalytic photoredox Minisci-type alkylations supported by noncovalent interactions under mild aqueous conditions.
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Affiliation(s)
- Jędrzej Predygier
- Institute of Organic Chemistry, Polish Academy of Sciences
- Faculty of Chemistry, University of Warsaw
| | - Joanna Szczepanik
- Institute of Organic Chemistry, Polish Academy of Sciences
- Faculty of Chemistry, Warsaw University of Technology
| | - Maciej Giedyk
- Institute of Organic Chemistry, Polish Academy of Sciences
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5
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Santos MS, Cybularczyk‐Cecotka M, König B, Giedyk M. Minisci C−H Alkylation of Heteroarenes Enabled by Dual Photoredox/Bromide Catalysis in Micellar Solutions**. Chemistry 2020; 26:15323-15329. [DOI: 10.1002/chem.202002320] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 06/23/2020] [Indexed: 12/16/2022]
Affiliation(s)
- Marilia S. Santos
- Institute of Organic Chemistry Faculty of Chemistry and Pharmacy University of Regensburg Universitätsstraße 31 93053 Regensburg Germany
| | | | - Burkhard König
- Institute of Organic Chemistry Faculty of Chemistry and Pharmacy University of Regensburg Universitätsstraße 31 93053 Regensburg Germany
| | - Maciej Giedyk
- Institute of Organic Chemistry Polish Academy of Sciences Kasprzaka 44/52 01-224 Warsaw Poland
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6
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Affiliation(s)
- Daniel Petzold
- Department of Organic Chemistry University of Regensburg Universitätsstraße 31 93053 Regensburg Germany
| | - Maciej Giedyk
- Department of Organic Chemistry University of Regensburg Universitätsstraße 31 93053 Regensburg Germany
- Institute of Organic Chemistry Polish Academy of Sciences Kasprzaka 44/52 01‐224 Warsaw Poland
| | - Anamitra Chatterjee
- Department of Organic Chemistry University of Regensburg Universitätsstraße 31 93053 Regensburg Germany
| | - Burkhard König
- Department of Organic Chemistry University of Regensburg Universitätsstraße 31 93053 Regensburg Germany
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7
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Giedyk M, Jackowska A, Równicki M, Kolanowska M, Trylska J, Gryko D. Vitamin B 12 transports modified RNA into E. coli and S. Typhimurium cells. Chem Commun (Camb) 2019; 55:763-766. [PMID: 30480264 DOI: 10.1039/c8cc05064c] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Specifically designed, antisense oligonucleotides are promising candidates for antibacterial drugs. They suppress the correct expression of bacterial genes by complementary binding to essential sequences of bacterial DNA or RNA. The main obstacle in fully utilizing their potential as therapeutic agents comes from the fact that bacteria do not uptake oligonucleotides from their environment. Herein, we report that vitamin B12 can transport oligonucleotides into Escherichia coli and Salmonella typhimurium cells. 5'-Aminocobalamin with an alkyne linker and azide-modified oligonucleotides enabled the synthesis of vitamin B12-2'OMeRNA conjugates using an efficient "click" methodology. Inhibition of protein expression in E. coli and S. Typhimurium cells indicates an unprecedented transport of 2'OMeRNA oligomers into bacterial cells via the vitamin B12 delivery pathway.
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Affiliation(s)
- Maciej Giedyk
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
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8
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Abstract
Vitamin B12 derivatives bearing either the amino or the carboxylic group at the 5′-position were synthesised hence enabling conjugation of therapeutics to vitamin B12via the amide bond.
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Affiliation(s)
- A. Jackowska
- Institute of Organic Chemistry Polish Academy of Sciences
- 01-224 Warsaw
- Poland
| | - M. Chromiński
- Institute of Organic Chemistry Polish Academy of Sciences
- 01-224 Warsaw
- Poland
| | - M. Giedyk
- Institute of Organic Chemistry Polish Academy of Sciences
- 01-224 Warsaw
- Poland
| | - D. Gryko
- Institute of Organic Chemistry Polish Academy of Sciences
- 01-224 Warsaw
- Poland
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9
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Affiliation(s)
- Keith ó Proinsias
- Institute of Organic Chemistry PAS, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | | | | | - Maciej Giedyk
- Institute of Organic Chemistry PAS, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Dorota Gryko
- Institute of Organic Chemistry PAS, Kasprzaka 44/52, 01-224 Warsaw, Poland
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10
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Giedyk M, Turkowska J, Lepak S, Marculewicz M, Ó Proinsias K, Gryko D. Photoinduced Vitamin B 12-Catalysis for Deprotection of (Allyloxy)arenes. Org Lett 2017; 19:2670-2673. [PMID: 28453294 DOI: 10.1021/acs.orglett.7b01012] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Vitamin B12 is a natural cobalt complex that, while reduced to the "supernucleophilic" Co(I) form, can easily react with electrophiles via an SN2 mechanism. It is also shown to react via an SN2' mechanism with allylic compounds allowing for photochemical deprotection of (allyloxy)arenes. A sustainable alternative to commonly used noble metal-catalyzed deprotection reactions is presented.
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Affiliation(s)
- Maciej Giedyk
- Institute of Organic Chemistry Polish Academy of Science , Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Joanna Turkowska
- Institute of Organic Chemistry Polish Academy of Science , Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Sandra Lepak
- Institute of Organic Chemistry Polish Academy of Science , Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Marcin Marculewicz
- Institute of Organic Chemistry Polish Academy of Science , Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Keith Ó Proinsias
- Institute of Organic Chemistry Polish Academy of Science , Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Dorota Gryko
- Institute of Organic Chemistry Polish Academy of Science , Kasprzaka 44/52, 01-224 Warsaw, Poland
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11
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Giedyk M, Shimakoshi H, Goliszewska K, Gryko D, Hisaeda Y. Electrochemistry and catalytic properties of amphiphilic vitamin B12 derivatives in nonaqueous media. Dalton Trans 2016; 45:8340-6. [PMID: 26974051 DOI: 10.1039/c6dt00355a] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The reduction pathway of cobalester (CN)Cble, an amphiphilic vitamin B12 derivative, was investigated in organic solvents under electrochemical conditions and compared with mono- and dicyanocobyrinates. The redox characteristics were determined using cyclic voltammetry and spectroelectrochemical methods. The presence of a nucleotide moiety in B12-derivative impedes the in situ formation of dicyano-species thus facilitating the (CN)Co(iii) to Co(i) reduction. The (CN)Cble shows stepwise reduction to Co(i) via (CN)Co(ii). The reduction of (CN)Co(ii)/Co(i) was found to depend on cyanide-solvent exchange equilibrium with weakly coordinating solvents and bulky peripheral chains promoting intact (CN)Co(ii) species existence. The studied complexes were also utilized as catalysts in bulk electrolysis of benzyl bromide affording bibenzyl in very good yield.
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Affiliation(s)
- M Giedyk
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - H Shimakoshi
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, Fukuoka, 819-0395, Japan.
| | - K Goliszewska
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - D Gryko
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - Y Hisaeda
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, Fukuoka, 819-0395, Japan.
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Abstract
Cobalester, a natural nontoxic vitamin B12 derivative, was found to catalyse unusual olefinic sp2 C–H alkylation with diazo reagents as a carbene source instead of the expected cyclopropanation.
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Affiliation(s)
- Maciej Giedyk
- Institute of Organic Chemistry Polish Academy of Sciences
- 01-224 Warsaw
- Poland
| | | | - Keith ó Proinsias
- Institute of Organic Chemistry Polish Academy of Sciences
- 01-224 Warsaw
- Poland
| | - Dorota Gryko
- Institute of Organic Chemistry Polish Academy of Sciences
- 01-224 Warsaw
- Poland
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Abstract
This tutorial review focuses on cobalamin as a natural, nontoxic, environmentally benign cobalt catalyst for synthetically useful organic reactions.
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Affiliation(s)
- Maciej Giedyk
- Institute of Organic Chemistry
- Polish Academy of Sciences
- 01-224 Warsaw
- Poland
| | - Katarzyna Goliszewska
- Institute of Organic Chemistry
- Polish Academy of Sciences
- 01-224 Warsaw
- Poland
- Faculty of Chemistry
| | - Dorota Gryko
- Institute of Organic Chemistry
- Polish Academy of Sciences
- 01-224 Warsaw
- Poland
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Giedyk M, ó Proinsias K, Kurcoń S, Sharina I, Martin E, Gryko D. Small alterations in cobinamide structure considerably influence sGC activation. ChemMedChem 2014; 9:2344-50. [PMID: 25044578 DOI: 10.1002/cmdc.201402209] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2014] [Indexed: 11/07/2022]
Abstract
Specially designed B-ring-modified cobalamin derivatives were synthesized and tested as potential activators of soluble guanylyl cyclase (sGC). Herein, we disclose the influence of substituents at the c- and d-positions in hydrophilic and hydrophobic cobyrinic acid derivatives on their capacities to activate sGC. The presence of the amide group at c-/d-position in cobyrinic acid derivatives strongly influence the level of sGC activation. Removal of the d-position altogether has a profound effect for hydrophobic compounds. In contrast, little differences were observed in hydrophilic ones.
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Affiliation(s)
- Maciej Giedyk
- Institute of Organic Chemistry PAS, Kasprzaka 44/52, 01-224 Warsaw (Poland), Fax: (+48) 22-632-6681
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15
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Chromiński M, Giedyk M, Gryko D. Organocatalytic γ-oxidation of α,β-unsaturated aldehydes. ARKIVOC 2014. [DOI: 10.3998/ark.5550190.p008.394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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Abstract
The reaction of vitamin B12 with DMF-DMA and MeOH as a nucleophile affords cobalester, the first amphiphilic cobalamin derivative which is able to catalyze C–C bond forming reactions.
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Affiliation(s)
- M. Giedyk
- Institute of Organic Chemistry Polish Academy of Sciences
- 01-224 Warsaw, Poland
| | - S. N. Fedosov
- Department of Engineering Science
- Aarhus University
- Denmark
| | - D. Gryko
- Institute of Organic Chemistry Polish Academy of Sciences
- 01-224 Warsaw, Poland
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Proinsias KÓ, Giedyk M, Banach Ł, Rutkowska-Zbik D, Gryko D. Inside Cover: Selectively Modified Cobyrinic Acid Derivatives (Asian J. Org. Chem. 6/2013). ASIAN J ORG CHEM 2013. [DOI: 10.1002/ajoc.201390016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Proinsias KÓ, Giedyk M, Sharina IG, Martin E, Gryko D. Synthesis of New Hydrophilic and Hydrophobic Cobinamides as NO-Independent sGC Activators. ACS Med Chem Lett 2012; 3:476-9. [PMID: 24900497 DOI: 10.1021/ml300060n] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2012] [Accepted: 04/13/2012] [Indexed: 12/14/2022] Open
Abstract
Herein, the synthesis of novel hydrophobic and hydrophilic cobinamides via aminolysis of vitamin B12 derivatives that activate soluble guanyl cyclase (sGC) is presented. Unlike other sGC regulators, they target the catalytic domain of sGC and show higher activity than (CN)2Cbi.
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Affiliation(s)
- Keith ó Proinsias
- Institute of Organic Chemistry PAS, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Maciej Giedyk
- Institute of Organic Chemistry PAS, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Iraida G. Sharina
- Department of Internal Medicine,
Division of Cardiology, University of Texas Health Science Center
in Houston, 1941 East Road, The University of Texas, Houston, Texas 77054, United States
| | - Emil Martin
- Department of Internal Medicine,
Division of Cardiology, University of Texas Health Science Center
in Houston, 1941 East Road, The University of Texas, Houston, Texas 77054, United States
| | - Dorota Gryko
- Institute of Organic Chemistry PAS, Kasprzaka 44/52, 01-224 Warsaw, Poland
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Proinsias KÓ, Giedyk M, Loska R, Chromiński M, Gryko D. Selective Modifications of Hydrophobic Vitamin B12 Derivatives at c-and d-Positions. J Org Chem 2011; 76:6806-12. [DOI: 10.1021/jo201235b] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Keith ó Proinsias
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Maciej Giedyk
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Rafał Loska
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Mikołaj Chromiński
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Dorota Gryko
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
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