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Hakkarainen M, Kaaja I, Douglas SPM, Vulliamy T, Dokal I, Soulier J, Larcher L, Peffault de Latour R, Leblanc T, Sicre de Fontbrune F, Siitonen T, Lohi O, Hellström-Lindberg E, Barbany G, Tesi B, Shimamura A, Beier F, Jackson S, Kuperman AA, Falik Zaccai T, Tamary H, Mecucci C, Capolsini I, Jahnukainen K, Salmenniemi U, Niinimäki R, Varilo T, Kilpivaara O, Wartiovaara-Kautto U. The clinical picture of ERCC6L2 disease: from bone marrow failure to acute leukemia. Blood 2023; 141:2853-2866. [PMID: 36952636 DOI: 10.1182/blood.2022019425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 02/27/2023] [Accepted: 02/27/2023] [Indexed: 03/25/2023] Open
Abstract
Biallelic germ line excision repair cross-complementing 6 like 2 (ERCC6L2) variants strongly predispose to bone marrow failure (BMF) and myeloid malignancies, characterized by somatic TP53-mutated clones and erythroid predominance. We present a series of 52 subjects (35 families) with ERCC6L2 biallelic germ line variants collected retrospectively from 11 centers globally, with a follow-up of 1165 person-years. At initial investigations, 32 individuals were diagnosed with BMF and 15 with a hematological malignancy (HM). The subjects presented with 19 different variants of ERCC6L2, and we identified a founder mutation, c.1424delT, in Finnish patients. The median age of the subjects at baseline was 18 years (range, 2-65 years). Changes in the complete blood count were mild despite severe bone marrow (BM) hypoplasia and somatic TP53 mutations, with no significant difference between subjects with or without HMs. Signs of progressive disease included increasing TP53 variant allele frequency, dysplasia in megakaryocytes and/or erythroid lineage, and erythroid predominance in the BM morphology. The median age at the onset of HM was 37.0 years (95% CI, 31.5-42.5; range, 12-65 years). The overall survival (OS) at 3 years was 95% (95% CI, 85-100) and 19% (95% CI, 0-39) for patients with BMF and HM, respectively. Patients with myelodysplastic syndrome or acute myeloid leukemia with mutated TP53 undergoing hematopoietic stem cell transplantation had a poor outcome with a 3-year OS of 28% (95% CI, 0-61). Our results demonstrated the importance of early recognition and active surveillance in patients with biallelic germ line ERCC6L2 variants.
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Affiliation(s)
- Marja Hakkarainen
- Applied Tumor Genomics Research Program, Research Programs Unit, Faculty of Medicine, University of Helsinki, Helsinki, Finland
- Department of Hematology, Helsinki University Hospital Comprehensive Cancer Center, University of Helsinki, Helsinki, Finland
- Department of Medical and Clinical Genetics/Medicum, Faculty of Medicine, University of Helsinki, Helsinki, Finland
| | - Ilse Kaaja
- Applied Tumor Genomics Research Program, Research Programs Unit, Faculty of Medicine, University of Helsinki, Helsinki, Finland
- Department of Medical and Clinical Genetics/Medicum, Faculty of Medicine, University of Helsinki, Helsinki, Finland
| | - Suvi P M Douglas
- Applied Tumor Genomics Research Program, Research Programs Unit, Faculty of Medicine, University of Helsinki, Helsinki, Finland
- Department of Medical and Clinical Genetics/Medicum, Faculty of Medicine, University of Helsinki, Helsinki, Finland
| | - Tom Vulliamy
- Blizard Institute, Faculty of Medicine and Dentistry, Queen Mary University of London, London, United Kingdom
| | - Inderjeet Dokal
- Centre for Genomics and Child Health, Blizard Institute, Queen Mary University of London and Barts Health, London, United Kingdom
| | - Jean Soulier
- Hematology Laboratory and INSERM U944, Saint-Louis Hospital, University of Paris, Paris, France
| | - Lise Larcher
- Hematology Laboratory and INSERM U944, Saint-Louis Hospital, University of Paris, Paris, France
| | - Régis Peffault de Latour
- French Reference Center for Aplastic Anemia, BMT unit, Saint-Louis Hospital, Paris Cité University, Paris, France
| | - Thierry Leblanc
- Department of Immunology and Pediatric Hematology, Assistance Publique-Hôpitaux de Paris, Robert Debré Hospital, URP3518 University Paris Cité, Paris, France
| | - Flore Sicre de Fontbrune
- French Reference Center for Aplastic Anemia, BMT unit, Saint-Louis Hospital, Paris Cité University, Paris, France
| | - Timo Siitonen
- Department of Medicine, Oulu University Hospital Cancer Center, Oulu, Finland
| | - Olli Lohi
- Tampere Center for Child, Adolescent and Maternal Health Research, Faculty of Medicine and Health Technology, Tampere University and Tays Cancer Center, Tampere University Hospital, Tampere, Finland
| | - Eva Hellström-Lindberg
- Center for Hematology and Regenerative Medicine, Department of Medicine, Karolinska Institutet, Huddinge, Sweden
- Department of Hematology, Karolinska University Hospital, Stockholm, Sweden
| | - Gisela Barbany
- Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden
- Department of Clinical Genetics, Karolinska University Hospital, Stockholm, Sweden
| | - Bianca Tesi
- Center for Hematology and Regenerative Medicine, Department of Medicine, Karolinska Institutet, Huddinge, Sweden
- Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden
- Department of Clinical Genetics, Karolinska University Hospital, Stockholm, Sweden
| | - Akiko Shimamura
- Dana-Farber/Boston Children's Hospital Cancer and Blood Disorders Center, Harvard Medical School, Boston, MA
| | - Fabian Beier
- Department of Hematology, Oncology, Hemostaseology and Stem Cell Transplantation, RWTH Aachen University, Aachen, Germany
- Center for Integrated Oncology Aachen Bonn Cologne Düsseldorf, Aachen, Germany
| | - Sharon Jackson
- Department of Haematology, Te Whatu Ora Health New Zealand Counties Manukau, Auckland, New Zealand
| | - Amir Asher Kuperman
- Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel
- Blood Coagulation Service and Pediatric Hematology Clinic, Galilee Medical Center, Nahariya, Israel
| | - Tzipora Falik Zaccai
- Blood Coagulation Service and Pediatric Hematology Clinic, Galilee Medical Center, Nahariya, Israel
| | - Hannah Tamary
- The Rina Zaizov Hematology-Oncology Division, Schneider Children's Medical Center of Israel, Petah Tikva, Israel
| | - Cristina Mecucci
- Laboratorio di Citogenetica e Medicina Molecolare, Sezione di Ematologia ed Immunologia Clinica, Centro Ricerche Emato-Oncologiche, Università degli Studi di Perugia, Perugia, Italy
| | - Ilaria Capolsini
- Pediatric Oncohematology with Bone Marrow Transplant, S. Maria della Misericordia Hospital, Perugia, Italy
| | - Kirsi Jahnukainen
- Children's Hospital, and Pediatric Research Center, University of Helsinki and Helsinki University Hospital, Helsinki, Finland
| | - Urpu Salmenniemi
- Department of Hematology, Helsinki University Hospital Comprehensive Cancer Center, University of Helsinki, Helsinki, Finland
| | - Riitta Niinimäki
- Department of Pediatrics, Oulu University Hospital and PEDEGO Research Unit, University of Oulu, Oulu, Finland
| | - Teppo Varilo
- Department of Medical and Clinical Genetics/Medicum, Faculty of Medicine, University of Helsinki, Helsinki, Finland
- Department of Public Health and Welfare, Finnish Institute for Health and Welfare, Helsinki, Finland
| | - Outi Kilpivaara
- Applied Tumor Genomics Research Program, Research Programs Unit, Faculty of Medicine, University of Helsinki, Helsinki, Finland
- Department of Medical and Clinical Genetics/Medicum, Faculty of Medicine, University of Helsinki, Helsinki, Finland
- HUS Diagnostic Center (Helsinki University Hospital), HUSLAB Laboratory of Genetics, University of Helsinki, Helsinki, Finland
| | - Ulla Wartiovaara-Kautto
- Applied Tumor Genomics Research Program, Research Programs Unit, Faculty of Medicine, University of Helsinki, Helsinki, Finland
- Department of Hematology, Helsinki University Hospital Comprehensive Cancer Center, University of Helsinki, Helsinki, Finland
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Hakkarainen M, Koski JR, Heckman CA, Anttila P, Silvennoinen R, Lievonen J, Kilpivaara O, Wartiovaara‐Kautto U. A germline exome analysis reveals harmful POT1 variants in multiple myeloma patients and families. EJHaem 2022; 3:1352-1357. [PMID: 36467798 PMCID: PMC9713058 DOI: 10.1002/jha2.557] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Revised: 08/10/2022] [Accepted: 08/15/2022] [Indexed: 06/17/2023]
Abstract
Observations of inherited susceptibility to multiple myeloma have led to active research in defining predisposing genes to the disease. Here, we analysed 128 plasma cell dyscrasia patients' germline whole-exome sequencing data. Rare dominantly inherited pathogenic or likely pathogenic (P/LP) variant was found in 9.4% of the patients. Among the P/LP variants, CHEK2 (p. Thr410MetfsTer15) was the most prevalent (n = 5, 3.9%). Interestingly, P/LP variants in POT1 were identified in three patients (2.3%). Our findings broaden the spectrum of POT1-related cancers and demonstrate the importance of the germline genetic analysis in hematological malignancies.
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Affiliation(s)
- Marja Hakkarainen
- Applied Tumor Genomics Research Program, Faculty of MedicineUniversity of HelsinkiHelsinkiFinland
- Department of Medical and Clinical Genetics/Medium, Faculty of MedicineUniversity of HelsinkiHelsinkiFinland
- Department of HematologyHelsinki University Hospital Comprehensive Cancer Center, University of HelsinkiHelsinkiFinland
| | - Jessica R. Koski
- Applied Tumor Genomics Research Program, Faculty of MedicineUniversity of HelsinkiHelsinkiFinland
- Department of Medical and Clinical Genetics/Medium, Faculty of MedicineUniversity of HelsinkiHelsinkiFinland
| | - Caroline A. Heckman
- Institute for Molecular Medicine Finland ‐ FIMM, HiLIFE ‐ Helsinki institute of Life ScienceUniversity of HelsinkiHelsinkiFinland
- iCAN Digital Precision Cancer Medicine FlagshipUniversity of HelsinkiHelsinkiFinland
| | - Pekka Anttila
- Department of HematologyHelsinki University Hospital Comprehensive Cancer Center, University of HelsinkiHelsinkiFinland
| | - Raija Silvennoinen
- Department of HematologyHelsinki University Hospital Comprehensive Cancer Center, University of HelsinkiHelsinkiFinland
| | - Juha Lievonen
- Department of HematologyHelsinki University Hospital Comprehensive Cancer Center, University of HelsinkiHelsinkiFinland
| | - Outi Kilpivaara
- Applied Tumor Genomics Research Program, Faculty of MedicineUniversity of HelsinkiHelsinkiFinland
- Department of Medical and Clinical Genetics/Medium, Faculty of MedicineUniversity of HelsinkiHelsinkiFinland
- iCAN Digital Precision Cancer Medicine FlagshipUniversity of HelsinkiHelsinkiFinland
- HUS Diagnostic Center (Helsinki University Hospital), HUSLAB Laboratory of GeneticsHelsinkiFinland
| | - Ulla Wartiovaara‐Kautto
- Applied Tumor Genomics Research Program, Faculty of MedicineUniversity of HelsinkiHelsinkiFinland
- Department of HematologyHelsinki University Hospital Comprehensive Cancer Center, University of HelsinkiHelsinkiFinland
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Feurstein S, Churpek JE, Walsh T, Keel S, Hakkarainen M, Schroeder T, Germing U, Geyh S, Heuser M, Thol F, Pohlkamp C, Haferlach T, Gao J, Owen C, Goehring G, Schlegelberger B, Verma D, Krause DS, Gao G, Cronin T, Gulsuner S, Lee M, Pritchard CC, Subramanian HP, Del Gaudio D, Li Z, Das S, Kilpivaara O, Wartiovaara-Kautto U, Wang ES, Griffiths EA, Döhner K, Döhner H, King MC, Godley LA. Germline variants drive myelodysplastic syndrome in young adults. Leukemia 2021; 35:2439-2444. [PMID: 33510405 PMCID: PMC8725861 DOI: 10.1038/s41375-021-01137-0] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Revised: 12/17/2020] [Accepted: 01/11/2021] [Indexed: 01/29/2023]
Affiliation(s)
- Simone Feurstein
- Department of Medicine, Section of Hematology/Oncology, The University of Chicago Comprehensive Cancer Center, The University of Chicago, Chicago, IL, USA
| | - Jane E Churpek
- Division of Hematology, Medical Oncology, and Palliative Care, Department of Medicine, The University of Wisconsin School of Medicine and Public Health, Madison, WI, USA
| | - Tom Walsh
- Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA, USA
| | - Sioban Keel
- Department of Medicine, Division of Hematology, University of Washington, Seattle, WA, USA
| | - Marja Hakkarainen
- Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland
- Department of Hematology, Helsinki University Hospital Comprehensive Cancer Center, University of Helsinki, Helsinki, Finland
| | - Thomas Schroeder
- Department of Hematology, Oncology and Clinical Immunology, Medical Faculty, University of Duesseldorf, Duesseldorf, Germany
| | - Ulrich Germing
- Department of Hematology, Oncology and Clinical Immunology, Medical Faculty, University of Duesseldorf, Duesseldorf, Germany
| | - Stefanie Geyh
- Department of Hematology, Oncology and Clinical Immunology, Medical Faculty, University of Duesseldorf, Duesseldorf, Germany
| | - Michael Heuser
- Department of Hematology, Hemostasis, Oncology, and Stem Cell Transplantation, Hannover Medical School, Hannover, Germany
| | - Felicitas Thol
- Department of Hematology, Hemostasis, Oncology, and Stem Cell Transplantation, Hannover Medical School, Hannover, Germany
| | | | | | - Juehua Gao
- Department of Pathology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA
| | - Carolyn Owen
- Division of Hematology and Hematological Malignancies, University of Calgary, Calgary, AB, Canada
| | - Gudrun Goehring
- Department of Human Genetics, Hannover Medical School, Hannover, Germany
| | | | - Divij Verma
- Georg-Speyer-Haus, Institute for Tumor Biology and Experimental Medicine, Frankfurt, Germany
- Department of Medicine, Albert Einstein College of Medicine, New York, NY, USA
| | - Daniela S Krause
- Georg-Speyer-Haus, Institute for Tumor Biology and Experimental Medicine, Frankfurt, Germany
| | - Guimin Gao
- Department of Public Health Sciences, The University of Chicago, Chicago, IL, USA
| | - Tara Cronin
- Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA
| | - Suleyman Gulsuner
- Department of Genome Sciences, University of Washington, Seattle, WA, USA
| | - Ming Lee
- Department of Genome Sciences, University of Washington, Seattle, WA, USA
| | - Colin C Pritchard
- Department of Laboratory Medicine, University of Washington, Seattle, WA, USA
| | | | - Daniela Del Gaudio
- Department of Human Genetics, The University of Chicago, Chicago, IL, USA
| | - Zejuan Li
- Department of Pathology and Genomic Medicine, Houston Methodist Research Institute and Houston Methodist Hospital, Houston, TX, USA
| | - Soma Das
- Department of Human Genetics, The University of Chicago, Chicago, IL, USA
| | - Outi Kilpivaara
- Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland
- Department of Medical and Clinical Genetics/Medicum, Faculty of Medicine, University of Helsinki, Helsinki, Finland
| | - Ulla Wartiovaara-Kautto
- Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland
- Department of Hematology, Helsinki University Hospital Comprehensive Cancer Center, University of Helsinki, Helsinki, Finland
| | - Eunice S Wang
- Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA
| | | | - Konstanze Döhner
- Department of Internal Medicine III, University Hospital of Ulm, Ulm, Germany
| | - Hartmut Döhner
- Department of Internal Medicine III, University Hospital of Ulm, Ulm, Germany
| | - Mary-Claire King
- Department of Genome Sciences, University of Washington, Seattle, WA, USA
| | - Lucy A Godley
- Department of Medicine, Section of Hematology/Oncology, The University of Chicago Comprehensive Cancer Center, The University of Chicago, Chicago, IL, USA.
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Golda-Cepa M, Chorylek A, Chytrosz P, Brzychczy-Wloch M, Jaworska J, Kasperczyk J, Hakkarainen M, Engvall K, Kotarba A. Multifunctional PLGA/Parylene C Coating for Implant Materials: An Integral Approach for Biointerface Optimization. ACS Appl Mater Interfaces 2016; 8:22093-22105. [PMID: 27500860 DOI: 10.1021/acsami.6b08025] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Functionalizing implant surfaces is critical for improving their performance. An integrated approach was employed to develop a multifunctional implant coating based on oxygen plasma-modified parylene C and drug-loaded, biodegradable poly(dl-lactide-co-glycolide) (PLGA). The key functional attributes of the coating (i.e., anti-corrosion, biocompatible, anti-infection, and therapeutic) were thoroughly characterized at each fabrication step by spectroscopic, microscopic, and biologic methods and at different scales, ranging from molecular, through the nano- and microscales to the macroscopic scale. The chemistry of each layer was demonstrated separately, and their mutual affinity was shown to be indispensable for the development of versatile coatings for implant applications.
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Affiliation(s)
- M Golda-Cepa
- Faculty of Chemistry, Jagiellonian University , Ingardena 3, 30-060 Krakow, Poland
| | - A Chorylek
- Faculty of Chemistry, Jagiellonian University , Ingardena 3, 30-060 Krakow, Poland
| | - P Chytrosz
- Faculty of Chemistry, Jagiellonian University , Ingardena 3, 30-060 Krakow, Poland
| | - M Brzychczy-Wloch
- Department of Bacteriology, Microbial Ecology and Parasitology, Jagiellonian University Medical College , Czysta 18, 31-121 Krakow, Poland
| | - J Jaworska
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences , Curie Skłodowskiej 34, 41-819 Zabrze, Poland
| | - J Kasperczyk
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences , Curie Skłodowskiej 34, 41-819 Zabrze, Poland
| | - M Hakkarainen
- Department of Fiber and Polymer Technology, KTH Royal Institute of Technology , SE-100 44 Stockholm, Sweden
| | - K Engvall
- Department of Chemical Engineering and Technology, KTH Royal Institute of Technology , SE-100 44 Stockholm, Sweden
| | - A Kotarba
- Faculty of Chemistry, Jagiellonian University , Ingardena 3, 30-060 Krakow, Poland
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Lyytinen T, Bragge T, Hakkarainen M, Liikavainio T, Karjalainen P, Arokoski J. Repeatability of knee impulsive loading measurements with skin-mounted accelerometers and lower limb surface electromyographic recordings during gait in knee osteoarthritic and asymptomatic individuals. J Musculoskelet Neuronal Interact 2016; 16:63-74. [PMID: 26944825 PMCID: PMC5089457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
OBJECTIVES To determine the repeatability of knee joint impulsive loading measurements with skin-mounted accelerometers (SMAs) and lower limb surface electromyography (EMG) recordings during gait. METHODS Triaxial SMA and EMG from 4 muscles during level and stair walking in nine healthy and nine knee osteoarthritis (OA) subjects were used. The initial peak acceleration (IPA), root mean square (RMS), maximal acceleration transient rate (ATRmax) and mean EMG activity (EMGact) were calculated. The coefficient of variation (CV) and the intraclass correlation coefficient (ICC) were calculated to measure repeatability. RESULTS The CV and ICC of RMS accelerations ranged from 4.9% to 10.9% and from 0.69 to 0.96 in both study groups during level walking. The CV and ICC of IPA and ATRmax varied from 7.7% to 14.2% and from 0.85 to 0.99 during level and stairs up walking in healthy subjects. The CV and ICC of EMGact ranged from 8.3% to 31.7% and from 0.16 to 0.97 in both study groups. CONCLUSIONS RMS accelerations exhibited good repeatability during walking in healthy and knee OA subjects. The repeatability of EMG measurements was acceptable in healthy subjects depending on the measured muscles.
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Affiliation(s)
- T. Lyytinen
- Department of Physical and Rehabilitation Medicine, Kuopio University Hospital, Kuopio, Finland,Palokka Health Center, Jyväskylä, Finland,Corresponding author: Tarja Lyytinen, MD, Department of Physical and Rehabilitation Medicine, Kuopio University Hospital P.O.B. 100, FI-70029 Kuopio, Finland E-mail:
| | - T. Bragge
- Department of Applied Physics, University of Eastern Finland
| | - M. Hakkarainen
- Department of Applied Physics, University of Eastern Finland
| | | | | | - J.P. Arokoski
- Department of Physical and Rehabilitation Medicine, Kuopio University Hospital, Kuopio, Finland,Institute of Clinical Medicine, University of Eastern Finland, Kuopio, Finland
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Golda-Cepa M, Brzychczy-Wloch M, Engvall K, Aminlashgari N, Hakkarainen M, Kotarba A. Microbiological investigations of oxygen plasma treated parylene C surfaces for metal implant coating. Materials Science and Engineering: C 2015; 52:273-81. [DOI: 10.1016/j.msec.2015.03.060] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2014] [Accepted: 03/25/2015] [Indexed: 12/16/2022]
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Gołda-Cępa M, Aminlashgari N, Hakkarainen M, Engvall K, Kotarba A. LDI-MS examination of oxygen plasma modified polymer for designing tailored implant biointerfaces. RSC Adv 2014. [DOI: 10.1039/c4ra02656j] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A versatile parylene C coating for biomaterials was fabricated by the mild oxygen plasma treatment and examined by the use of LDI-MS..
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Affiliation(s)
- M. Gołda-Cępa
- Faculty of Chemistry
- Jagiellonian University
- 30-060 Krakow, Poland
| | - N. Aminlashgari
- Department of Fibre and Polymer Technology
- KTH Royal Institute of Technology
- SE-100 44 Stockholm, Sweden
| | - M. Hakkarainen
- Department of Fibre and Polymer Technology
- KTH Royal Institute of Technology
- SE-100 44 Stockholm, Sweden
| | - K. Engvall
- Department of Chemical Engineering and Technology
- KTH Royal Institute of Technology
- SE-100 44 Stockholm, Sweden
| | - A. Kotarba
- Faculty of Chemistry
- Jagiellonian University
- 30-060 Krakow, Poland
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Lindell-Osuagwu L, Hakkarainen M, Sepponen K, Vainio K, Naaranlahti T, Kokki H. Prescribing for off-label use and unauthorized medicines in three paediatric wards in Finland, the status before and after the European Union Paediatric Regulation. J Clin Pharm Ther 2013; 39:144-53. [DOI: 10.1111/jcpt.12119] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2013] [Accepted: 11/20/2013] [Indexed: 11/29/2022]
Affiliation(s)
| | - M. Hakkarainen
- School of Pharmacy; University of Eastern Finland; Kuopio Finland
| | - K. Sepponen
- School of Pharmacy; University of Eastern Finland; Kuopio Finland
| | - K. Vainio
- School of Pharmacy; University of Eastern Finland; Kuopio Finland
| | - T. Naaranlahti
- Pharmacy Department; Kuopio University Hospital; Kuopio Finland
| | - H. Kokki
- Department of Anaesthesiology and Intensive Care; Kuopio University Hospital; University of Eastern Finland; Kuopio Finland
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Dånmark S, Finne-Wistrand A, Schander K, Hakkarainen M, Arvidson K, Mustafa K, Albertsson AC. In vitro and in vivo degradation profile of aliphatic polyesters subjected to electron beam sterilization. Acta Biomater 2011; 7:2035-46. [PMID: 21316490 DOI: 10.1016/j.actbio.2011.02.011] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2010] [Revised: 01/13/2011] [Accepted: 02/07/2011] [Indexed: 11/29/2022]
Abstract
Degradation characteristics in response to electron beam sterilization of designed and biodegradable aliphatic polyester scaffolds are relevant for clinically successful synthetic graft tissue regeneration. Scaffold degradation in vitro and in vivo were documented and correlated to the macroscopic structure and chemical design of the original polymer. The materials tested were of inherently diverse hydrophobicity and crystallinity: poly(L-lactide) (poly(LLA)) and random copolymers from L-lactide and ε-caprolactone or 1,5-dioxepan-2-one, fabricated into porous and non-porous scaffolds. After sterilization, the samples underwent hydrolysis in vitro for up to a year. In vivo, scaffolds were surgically implanted into rat calvarial defects and retrieved for analysis after 28 and 91days. In vitro, poly(L-lactide-co-1,5-dioxepan-2-one) (poly(LLA-co-DXO)) samples degraded most rapidly during hydrolysis, due to the pronounced chain-shortening reaction caused by the sterilization. This was indicated by the rapid decrease in both mass and molecular weight of poly(LLA-co-DXO). Poly(L-lactide-co-ε-caprolactone) (poly(LLA-co-CL)) samples were also strongly affected by sterilization, but mass loss was more gradual; molecular weight decreased rapidly during hydrolysis. Least affected by sterilization were the poly(LLA) samples, which subsequently showed low mass loss rate and molecular weight decrease during hydrolysis. Mechanical stability varied greatly: poly(LLA-co-CL) withstood mechanical testing for up to 182 days, while poly(LLA) and poly(LLA-co-DXO) samples quickly became too brittle. Poly(LLA-co-DXO) samples unexpectedly degraded more rapidly in vitro than in vivo. After sterilization by electron beam irradiation, the three biodegradable polymers present widely diverse degradation profiles, both in vitro and in vivo. Each exhibits the potential to be tailored to meet diverse clinical tissue engineering requirements.
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Affiliation(s)
- S Dånmark
- Centre for Clinical Dental Research, Department of Clinical Dentistry, Faculty of Medicine and Dentistry, University of Bergen, Norway
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Tarvainen MP, Georgiadis S, Lipponen JA, Hakkarainen M, Karjalainen PA. Time-varying spectrum estimation of heart rate variability signals with Kalman smoother algorithm. Annu Int Conf IEEE Eng Med Biol Soc 2010; 2009:1-4. [PMID: 19963704 DOI: 10.1109/iembs.2009.5332678] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
A time-varying parametric spectrum estimation method for analyzing dynamics of heart rate variability (HRV) signals is presented. In the method, HRV signal is first modeled with a time-varying autoregressive model and the model parameters are solved recursively with a Kalman smoother algorithm. Time-varying spectrum estimates are then obtained from the estimated model parameters. The obtained spectrum can be further decomposed into separate components, which is especially advantageous in HRV applications where low frequency (LF) and high frequency (HF) components are generally aimed to be distinguished. As case studies, the dynamics of HRV signals recorded during 1) orthostatic test, 2) exercise test and 3) simulated driving task are analyzed.
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Affiliation(s)
- M P Tarvainen
- Department of Physics, University of Kuopio, Kuopio, Finland.
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Gröning M, Hakkarainen M. Headspace solid-phase microextraction--a tool for new insights into the long-term thermo-oxidation mechanism of polyamide 6.6. J Chromatogr A 2001; 932:1-11. [PMID: 11695854 DOI: 10.1016/s0021-9673(01)01230-4] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Low-molecular-mass products formed during thermo-oxidation of polyamide 6.6 at 100 degrees C were extracted by headspace solid-phase microextraction and identified by GC-MS. A total of 18 degradation products of polyamide 6.6 were identified. In addition some low-molecular-mass products originating from the lubricants were detected. The identified degradation products were categorized into four groups where compounds within each group contain the same structural feature. In groups A, B and C several new thermo-oxidation products of polyamide 6.6 were identified including cyclic imides, pyridines and structural fragments from the original polyamide chain. 1-Pentyl-2,5-pyrrolidinedione (pentylsuccinimide) showed the largest increase in abundance during oxidation. The cyclopentanones in group D were already present in the un-aged material. Their amounts decreased during ageing and they are thus not formed during thermo-oxidation of polyamide 6.6 at 100 degrees C. The identified thermo-oxidation products can be formed as a result of extensive oxidation of the hexamethylenediamine unit in the polyamide backbone. The degradation products pattern shows that the long-term thermo-oxidative degradation, just like thermal degradation and photo-oxidation of polyamide 6.6, starts at the N-vicinal methylene groups.
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Affiliation(s)
- M Gröning
- Department of Polymer Technology, The Royal Institute of Technology (KTH), Stockholm, Sweden.
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Hakkarainen M, Karlsson S, Albertsson AC. Rapid (bio)degradation of polylactide by mixed culture of compost microorganisms—low molecular weight products and matrix changes. POLYMER 2000. [DOI: 10.1016/s0032-3861(99)00393-6] [Citation(s) in RCA: 109] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Hakkarainen M, Wahlfors J, Myöhänen S, Hiltunen MO, Eskelinen M, Johansson R, Jänne J. Hypermethylation of calcitonin gene regulatory sequences in human breast cancer as revealed by genomic sequencing. Int J Cancer 1996; 69:471-4. [PMID: 8980249 DOI: 10.1002/(sici)1097-0215(19961220)69:6<471::aid-ijc9>3.0.co;2-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
DNA methylation has been studied intensively during the past years in order to elucidate its role in the regulation of gene expression, gene imprinting and cancer progression. Earlier studies have shown that a general genomic under-methylation is associated with chronic lymphocytic leukemia and metastatic prostate cancer. Site-specific methylation changes, as revealed by the use of methylation-sensitive restriction enzymes, have been reported to occur in the promotor region of the calcitonin gene in chronic myeloid leukemia as it progresses from the chronic phase to blast crisis, in non-Hodgkin's lymphoid neoplasms and in non-lymphocytic leukemia. We have now explored possible methylation changes associated with benign and malignant breast tumors. Two approaches were employed: (i) chemical determination of general genomic methylation status and (ii) base-specific analysis of the methylation changes in the promoter of the calcitonin gene with the aid of genomic sequencing. The results did not reveal any changes of total DNA 5-methylcytosine content in ductal carcinoma of breast in comparison with benign tumors. There was a small, yet significant, increase in 5-methylcytosine content in lobular carcinoma. Genomic sequencing of the promoter region of the calcitonin gene, however, revealed a striking hypermethylation at or around the transcription start site of the gene in ductal carcinomas. In benign tumors and lobular carcinomas, this region was either entirely unmethylated or only slightly methylated. The latter changes may reflect a regional hypermethylation of the short arm of chromosome 11, which harbors, in addition to the calcitonin gene, a number of putative or established tumor-suppressor genes. Our results demonstrate that genomic sequencing in its present form can be used for a reliable and precise DNA methylation analysis of primary human tumors.
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MESH Headings
- 5-Methylcytosine
- Breast Neoplasms/chemistry
- Breast Neoplasms/genetics
- Calcitonin/genetics
- Carcinoma, Ductal, Breast/chemistry
- Carcinoma, Ductal, Breast/genetics
- Carcinoma, Lobular/chemistry
- Carcinoma, Lobular/genetics
- Chromatography, High Pressure Liquid/methods
- Cytosine/analogs & derivatives
- Cytosine/analysis
- DNA Methylation
- DNA, Neoplasm/chemistry
- Female
- Fibroadenoma/chemistry
- Fibroadenoma/genetics
- Gene Expression Regulation, Neoplastic
- Humans
- Regulatory Sequences, Nucleic Acid/genetics
- Sequence Analysis, DNA/methods
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Affiliation(s)
- M Hakkarainen
- A.I. Virtanen Institute, University of Kuopio, Finland
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Ramkumar D, Vaidya U, Bhattacharya M, Hakkarainen M, Albertsson A, Karlsson S. Properties of injection moulded starch/synthetic polymer blends—I. Effect of processing parameters on physical properties. Eur Polym J 1996. [DOI: 10.1016/0014-3057(96)00020-1] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Majuri ML, Hakkarainen M, Paavonen T, Renkonen R. Carcinoembryonic antigen is expressed on endothelial cells. A putative mediator of tumor cell extravasation and metastasis. APMIS 1994; 102:432-8. [PMID: 8068303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Carcinoembryonic antigen (CEA) is a highly glycosylated cell surface protein. It is produced in large amounts in essentially all colon and several other adenocarcinomas. It has therefore been widely used as a clinical tumor marker. CEA is also a member of the immunoglobulin superfamily. Members of this family, such as ICAM-1, ICAM-2, VCAM-1 and NCAM, are known to participate in cell-cell adhesion. Similarly, the intercellular adhesion properties of CEA have been documented: it has been shown to mediate homotypic adhesion of cultured human colon adenocarcinoma cell lines. In this study we show for the first time that CEA is expressed on cultured human umbilical vein endothelial cells and on the endothelial cell line Ea.hy926. The expression of CEA on cultured endothelial cells can be enhanced by TNF-alpha or IFN-gamma, and decreased by IL-4. We demonstrate using immunohistochemistry that anti-CEA monoclonal antibody reacted with FVIII-positive endothelium in tissue sections prepared from lymph nodes. Finally, we were able to show that CEA-positive breast carcinoma cells bind to purified CEA protein, whereas CEA-negative breast carcinoma cells do not. These results reveal for the first time that endothelial cells express CEA on the cell surface and suggest that CEA-expressing adenocarcinomas could adhere to endothelial cells via CEA-CEA interaction, thus facilitating tumor cell extravasation and hematogenic metastasis.
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Affiliation(s)
- M L Majuri
- Department of Bacteriology and Immunology, University of Helsinki, Finland
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Abstract
The alpha 4 beta 1 integrin VLA-4 is expressed on practically all leukocytes, except on mature granulocytes. Here we show that in vitro treatment of monocytic cells with phorbol-12-myristate-13-acetate (PMA) leads to a selective decrease in the VLA-4 alpha-chain expression, both at the RNA and protein level. Meanwhile the expression of beta 1 and that of alpha 5, another alpha-chain associating with beta 1, was seen to increase. The decrease of alpha 4 expression was restricted to monocytic cells, and was not observed on other VLA-4-positive cells tested (MOLT-4 T cells and HOS sarcoma cells). The down-regulation of the VLA-4 alpha-chain was followed by a decreased binding capacity of the cells to recombinant VCAM-1. This data indicates that while previous findings show that the integrin-dependent adhesion may rapidly be regulated by altering the avidity of the interacting molecules, their quantitative modulation also has a clear impact on adhesion.
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Affiliation(s)
- S Tiisala
- Department of Bacteriology and Immunology, University of Helsinki, Finland
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