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Wu K, Bai H, Chang YT, Redler R, McNally KE, Sheffler W, Brunette TJ, Hicks DR, Morgan TE, Stevens TJ, Broerman A, Goreshnik I, DeWitt M, Chow CM, Shen Y, Stewart L, Derivery E, Silva DA, Bhabha G, Ekiert DC, Baker D. De novo design of modular peptide-binding proteins by superhelical matching. Nature 2023;616:581-589. [PMID: 37020023 PMCID: PMC10115654 DOI: 10.1038/s41586-023-05909-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2022] [Accepted: 03/01/2023] [Indexed: 04/07/2023]

Affiliation(s)

Kejia Wu Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA Biological Physics, Structure and Design Graduate Program, University of Washington, Seattle, WA, USA
Hua Bai Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA
Ya-Ting Chang Department of Cell Biology, New York University School of Medicine, New York, NY, USA
Rachel Redler Department of Cell Biology, New York University School of Medicine, New York, NY, USA
Kerrie E McNally MRC Laboratory of Molecular Biology, Cambridge, UK
William Sheffler Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
T J Brunette Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Derrick R Hicks Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Tomos E Morgan MRC Laboratory of Molecular Biology, Cambridge, UK
Tim J Stevens MRC Laboratory of Molecular Biology, Cambridge, UK
Adam Broerman Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA Department of Chemical Engineering, University of Washington, Seattle, WA, USA
Inna Goreshnik Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Michelle DeWitt Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Cameron M Chow Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Yihang Shen Department of Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA
Lance Stewart Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Emmanuel Derivery MRC Laboratory of Molecular Biology, Cambridge, UK.
Daniel Adriano Silva Department of Biochemistry, University of Washington, Seattle, WA, USA. Institute for Protein Design, University of Washington, Seattle, WA, USA. Division of Life Science, The Hong Kong University of Science and Technology, Kowloon, Hong Kong. Monod Bio, Seattle, WA, USA.
Gira Bhabha Department of Cell Biology, New York University School of Medicine, New York, NY, USA
Damian C Ekiert Department of Cell Biology, New York University School of Medicine, New York, NY, USA Department of Microbiology, New York University School of Medicine, New York, NY, USA
David Baker Department of Biochemistry, University of Washington, Seattle, WA, USA. Institute for Protein Design, University of Washington, Seattle, WA, USA. Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.

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Yeh AHW, Norn C, Kipnis Y, Tischer D, Pellock SJ, Evans D, Ma P, Lee GR, Zhang JZ, Anishchenko I, Coventry B, Cao L, Dauparas J, Halabiya S, DeWitt M, Carter L, Houk KN, Baker D. De novo design of luciferases using deep learning. Nature 2023;614:774-780. [PMID: 36813896 PMCID: PMC9946828 DOI: 10.1038/s41586-023-05696-3] [Citation(s) in RCA: 79] [Impact Index Per Article: 79.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Accepted: 01/03/2023] [Indexed: 02/24/2023]

Affiliation(s)

Andy Hsien-Wei Yeh Department of Biochemistry, University of Washington, Seattle, WA, USA. Institute for Protein Design, University of Washington, Seattle, WA, USA. Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.
Christoffer Norn Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Yakov Kipnis Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA
Doug Tischer Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Samuel J Pellock Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Declan Evans Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA
Pengchen Ma Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA School of Chemistry, Xi'an Key Laboratory of Sustainable Energy Materials Chemistry, MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, Xi'an Jiaotong University, Xi'an, China
Gyu Rie Lee Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Jason Z Zhang Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Ivan Anishchenko Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Brian Coventry Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA
Longxing Cao Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Justas Dauparas Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Samer Halabiya Institute for Protein Design, University of Washington, Seattle, WA, USA
Michelle DeWitt Institute for Protein Design, University of Washington, Seattle, WA, USA
Lauren Carter Institute for Protein Design, University of Washington, Seattle, WA, USA
K N Houk Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA
David Baker Department of Biochemistry, University of Washington, Seattle, WA, USA. Institute for Protein Design, University of Washington, Seattle, WA, USA. Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.

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Zhang JZ, Yeh HW, Walls AC, Wicky BIM, Sprouse KR, VanBlargan LA, Treger R, Quijano-Rubio A, Pham MN, Kraft JC, Haydon IC, Yang W, DeWitt M, Bowen JE, Chow CM, Carter L, Ravichandran R, Wener MH, Stewart L, Veesler D, Diamond MS, Greninger AL, Koelle DM, Baker D. Thermodynamically coupled biosensors for detecting neutralizing antibodies against SARS-CoV-2 variants. Nat Biotechnol 2022;40:1336-1340. [PMID: 35484405 PMCID: PMC9463068 DOI: 10.1038/s41587-022-01280-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Accepted: 03/14/2022] [Indexed: 12/14/2022]

Affiliation(s)

Jason Z Zhang Department of Biochemistry, University of Washington, Seattle, WA, USA. Institute for Protein Design, University of Washington, Seattle, WA, USA.
Hsien-Wei Yeh Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Alexandra C Walls Department of Biochemistry, University of Washington, Seattle, WA, USA
Basile I M Wicky Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Kaitlin R Sprouse Department of Biochemistry, University of Washington, Seattle, WA, USA
Laura A VanBlargan Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA
Rebecca Treger Department of Laboratory Medicine & Pathology, University of Washington, Seattle, WA, USA
Alfredo Quijano-Rubio Institute for Protein Design, University of Washington, Seattle, WA, USA Department of Bioengineering, University of Washington, Seattle, WA, USA
Minh N Pham Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
John C Kraft Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Ian C Haydon Institute for Protein Design, University of Washington, Seattle, WA, USA
Wei Yang Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Michelle DeWitt Institute for Protein Design, University of Washington, Seattle, WA, USA
John E Bowen Department of Biochemistry, University of Washington, Seattle, WA, USA
Cameron M Chow Institute for Protein Design, University of Washington, Seattle, WA, USA
Lauren Carter Institute for Protein Design, University of Washington, Seattle, WA, USA
Rashmi Ravichandran Institute for Protein Design, University of Washington, Seattle, WA, USA
Mark H Wener Department of Laboratory Medicine & Pathology, University of Washington, Seattle, WA, USA
Lance Stewart Institute for Protein Design, University of Washington, Seattle, WA, USA
David Veesler Department of Biochemistry, University of Washington, Seattle, WA, USA Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA
Michael S Diamond Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA Department of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO, USA Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA Andrew M. and Jane M. Bursky Center for Human Immunology and Immunotherapy Programs, Washington University School of Medicine, Saint Louis, MO, USA
Alexander L Greninger Department of Laboratory Medicine & Pathology, University of Washington, Seattle, WA, USA Vaccine and Infectious Diseases Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA
David M Koelle Department of Laboratory Medicine & Pathology, University of Washington, Seattle, WA, USA Vaccine and Infectious Diseases Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA Department of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, WA, USA Translational Research Program, Benaroya Research Institute at Virginia Mason, Seattle, WA, USA Department of Global Health, University of Washington, Seattle, WA, USA
David Baker Department of Biochemistry, University of Washington, Seattle, WA, USA. Institute for Protein Design, University of Washington, Seattle, WA, USA. Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.

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Cao L, Coventry B, Goreshnik I, Huang B, Sheffler W, Park JS, Jude KM, Marković I, Kadam RU, Verschueren KHG, Verstraete K, Walsh STR, Bennett N, Phal A, Yang A, Kozodoy L, DeWitt M, Picton L, Miller L, Strauch EM, DeBouver ND, Pires A, Bera AK, Halabiya S, Hammerson B, Yang W, Bernard S, Stewart L, Wilson IA, Ruohola-Baker H, Schlessinger J, Lee S, Savvides SN, Garcia KC, Baker D. Design of protein-binding proteins from the target structure alone. Nature 2022;605:551-560. [PMID: 35332283 PMCID: PMC9117152 DOI: 10.1038/s41586-022-04654-9] [Citation(s) in RCA: 125] [Impact Index Per Article: 62.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 03/15/2022] [Indexed: 12/03/2022]

Affiliation(s)

Longxing Cao Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Brian Coventry Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA Molecular Engineering Graduate Program, University of Washington, Seattle, WA, USA
Inna Goreshnik Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Buwei Huang Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA Department of Bioengineering, University of Washington, Seattle, WA, USA
William Sheffler Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Joon Sung Park Department of Pharmacology, Yale University School of Medicine, New Haven, CT, USA
Kevin M Jude Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA, USA Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA, USA
Iva Marković VIB-UGent Center for Inflammation Research, Ghent, Belgium Unit for Structural Biology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium
Rameshwar U Kadam Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA
Koen H G Verschueren VIB-UGent Center for Inflammation Research, Ghent, Belgium Unit for Structural Biology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium
Kenneth Verstraete VIB-UGent Center for Inflammation Research, Ghent, Belgium Unit for Structural Biology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium
Scott Thomas Russell Walsh Chemical Biology Laboratory, National Cancer Institute, National Institutes of Health, Frederick, MD, USA J.A.M.E.S. Farm, Clarksville, MD, USA
Nathaniel Bennett Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA Molecular Engineering Graduate Program, University of Washington, Seattle, WA, USA
Ashish Phal Department of Biochemistry, University of Washington, Seattle, WA, USA Department of Bioengineering, University of Washington, Seattle, WA, USA Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA
Aerin Yang Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA, USA Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA, USA
Lisa Kozodoy Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Michelle DeWitt Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Lora Picton Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA, USA Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA, USA
Lauren Miller Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Eva-Maria Strauch Deptartment of Pharmaceutical and Biomedical Sciences, University of Georgia, Athens, GA, USA
Nicholas D DeBouver UCB Pharma, Bainbridge Island, WA, USA Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, WA, USA
Allison Pires Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, WA, USA Seattle Children's Center for Global Infectious Disease Research, Seattle, WA, USA
Asim K Bera Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Samer Halabiya Department of Electrical and Computer Engineering, University of Washington, Seattle, WA, USA
Bradley Hammerson Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, WA, USA
Wei Yang Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Steffen Bernard Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA
Lance Stewart Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA
Ian A Wilson Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA, USA
Hannele Ruohola-Baker Department of Biochemistry, University of Washington, Seattle, WA, USA Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA
Joseph Schlessinger Department of Pharmacology, Yale University School of Medicine, New Haven, CT, USA
Sangwon Lee Department of Pharmacology, Yale University School of Medicine, New Haven, CT, USA
Savvas N Savvides VIB-UGent Center for Inflammation Research, Ghent, Belgium Unit for Structural Biology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium
K Christopher Garcia Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA, USA Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA, USA
David Baker Department of Biochemistry, University of Washington, Seattle, WA, USA. Institute for Protein Design, University of Washington, Seattle, WA, USA. Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.

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Zhang JZ, Yeh HW, Walls AC, Wicky BIM, Sprouse K, VanBlargan LA, Treger R, Quijano-Rubio A, Pham MN, Kraft JC, Haydon IC, Yang W, DeWitt M, Chow C, Carter L, Wener MH, Stewart L, Veesler D, Diamond MS, Baker D. Detection of antibodies neutralizing historical and emerging SARS-CoV-2 strains using a thermodynamically coupled de novo biosensor system. bioRxiv 2021. [PMID: 34189528 DOI: 10.1101/2021.06.22.449355] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]

DeWitt M, Richardson TE, Reddy GD. Multiple Simultaneous Mature Teratomas of the Spinal Cord in an Adult. Cureus 2020;12:e10409. [PMID: 33062526 PMCID: PMC7550225 DOI: 10.7759/cureus.10409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open

Chambers D, Simpson L, Hill-Briggs F, Neta G, Vinson C, Chambers D, Beidas R, Marcus S, Aarons G, Hoagwood K, Schoenwald S, Evans A, Hurford M, Rubin R, Hadley T, Barg F, Walsh L, Adams D, Mandell D, Martin L, Mignogna J, Mott J, Hundt N, Kauth M, Kunik M, Naik A, Cully J, McGuire A, White D, Bartholomew T, McGrew J, Luther L, Rollins A, Salyers M, Cooper B, Funaiole A, Richards J, Lee A, Lapham G, Caldeiro R, Lozano P, Gildred T, Achtmeyer C, Ludman E, Addis M, Marx L, Bradley K, VanDeinse T, Wilson AB, Stacey B, Powell B, Bunger A, Cuddeback G, Barnett M, Stadnick N, Brookman-Frazee L, Lau A, Dorsey S, Pullmann M, Mitchell S, Schwartz R, Kirk A, Dusek K, Oros M, Hosler C, Gryczynski J, Barbosa C, Dunlap L, Lounsbury D, O’Grady K, Brown B, Damschroder L, Waltz T, Powell B, Ritchie M, Waltz T, Atkins D, Imel ZE, Xiao B, Can D, Georgiou P, Narayanan S, Berkel C, Gallo C, Sandler I, Brown CH, Wolchik S, Mauricio AM, Gallo C, Brown CH, Mehrotra S, Chandurkar D, Bora S, Das A, Tripathi A, Saggurti N, Raj A, Hughes E, Jacobs B, Kirkendall E, Loeb D, Trinkley K, Yang M, Sprowell A, Nease D, Lyon A, Lewis C, Boyd M, Melvin A, Nicodimos S, Liu F, Jungbluth N, Lyon A, Lewis C, Boyd M, Melvin A, Nicodimos S, Liu F, Jungbluth N, Flynn A, Landis-Lewis Z, Sales A, Baloh J, Ward M, Zhu X, Bennett I, Unutzer J, Mao J, Proctor E, Vredevoogd M, Chan YF, Williams N, Green P, Bernstein S, Rosner JM, DeWitt M, Tetrault J, Dziura J, Hsiao A, Sussman S, O’Connor P, Toll B, Jones M, Gassaway J, Tobin J, Zatzick D, Bradbury AR, Patrick-Miller L, Egleston B, Olopade OI, Hall MJ, Daly MB, Fleisher L, Grana G, Ganschow P, Fetzer D, Brandt A, Farengo-Clark D, Forman A, Gaber RS, Gulden C, Horte J, Long J, Chambers RL, Lucas T, Madaan S, Mattie K, McKenna D, Montgomery S, Nielsen S, Powers J, Rainey K, Rybak C, Savage M, Seelaus C, Stoll J, Stopfer J, Yao S, Domchek S, Hahn E, Munoz-Plaza C, Wang J, Delgadillo JG, Mittman B, Gould M, Liang S, Kegler MC, Cotter M, Phillips E, Hermstad A, Morton R, Beasley D, Martinez J, Riehman K, Gustafson D, Marsch L, Mares L, Quanbeck A, McTavish F, McDowell H, Brown R, Thomas C, Glass J, Isham J, Shah D, Liebschutz J, Lasser K, Watkins K, Ober A, Hunter S, Lamp K, Ewing B, Iwelunmor J, Gyamfi J, Blackstone S, Quakyi NK, Plange-Rhule J, Ogedegbe G, Kumar P, Van Devanter N, Nguyen N, Nguyen L, Nguyen T, Phuong N, Shelley D, Rudge S, Langlois E, Tricco A, Ball S, Lambert-Kerzner A, Sulc C, Simmons C, Shell-Boyd J, Oestreich T, O’Connor A, Neely E, McCreight M, Labebue A, DiFiore D, Brostow D, Ho PM, Aron D, Harvey J, McHugh M, Scanlon D, Lee R, Soltero E, Parker N, McNeill L, Ledoux T, McIsaac JL, MacLeod K, Ata N, Jarvis S, Kirk S, Purtle J, Dodson E, Brownson R, Mittman B, Curran G, Curran G, Pyne J, Aarons G, Ehrhart M, Torres E, Miech E, Miech E, Stevens K, Hamilton A, Cohen D, Padgett D, Morshed A, Patel R, Prusaczyk B, Aron DC, Gupta D, Ball S, Hand R, Abram J, Wolfram T, Hastings M, Moreland-Russell S, Tabak R, Ramsey A, Baumann A, Kryzer E, Montgomery K, Lewis E, Padek M, Powell B, Brownson R, Mamaril CB, Mays G, Branham K, Timsina L, Mays G, Hogg R, Fagan A, Shapiro V, Brown E, Haggerty K, Hawkins D, Oesterle S, Hawkins D, Catalano R, McKay V, Dolcini MM, Hoffer L, Moin T, Li J, Duru OK, Ettner S, Turk N, Chan C, Keckhafer A, Luchs R, Ho S, Mangione C, Selby P, Zawertailo L, Minian N, Balliunas D, Dragonetti R, Hussain S, Lecce J, Chinman M, Acosta J, Ebener P, Malone PS, Slaughter M, Freedman D, Flocke S, Lee E, Matlack K, Trapl E, Ohri-Vachaspati P, Taggart M, Borawski E, Parrish A, Harris J, Kohn M, Hammerback K, McMillan B, Hannon P, Swindle T, Curran G, Whiteside-Mansell L, Ward W, Holt C, Santos SL, Tagai E, Scheirer MA, Carter R, Bowie J, Haider M, Slade J, Wang MQ, Masica A, Ogola G, Berryman C, Richter K, Shelton R, Jandorf L, Erwin D, Truong K, Javier JR, Coffey D, Schrager SM, Palinkas L, Miranda J, Johnson V, Hutcherson V, Ellis R, Kharmats A, Marshall-King S, LaPradd M, Fonseca-Becker F, Kepka D, Bodson J, Warner E, Fowler B, Shenkman E, Hogan W, Odedina F, De Leon J, Hooper M, Carrasquillo O, Reams R, Hurt M, Smith S, Szapocznik J, Nelson D, Mandal P, Teufel J. Proceedings of the 8th Annual Conference on the Science of Dissemination and Implementation : Washington, DC, USA. 14-15 December 2015. Implement Sci 2016;11 Suppl 2:100. [PMID: 27490260 PMCID: PMC4977475 DOI: 10.1186/s13012-016-0452-0] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open

Abstract

A1 Introduction to the 8^th Annual Conference on the Science of Dissemination and Implementation: Optimizing Personal and Population Health

David Chambers, Lisa Simpson

D1 Discussion forum: Population health D&I research

Felicia Hill-Briggs

D2 Discussion forum: Global health D&I research

Gila Neta, Cynthia Vinson

D3 Discussion forum: Precision medicine and D&I research

David Chambers

S1 Predictors of community therapists’ use of therapy techniques in a large public mental health system

Rinad Beidas, Steven Marcus, Gregory Aarons, Kimberly Hoagwood, Sonja Schoenwald, Arthur Evans, Matthew Hurford, Ronnie Rubin, Trevor Hadley, Frances Barg, Lucia Walsh, Danielle Adams, David Mandell

S2 Implementing brief cognitive behavioral therapy (CBT) in primary care: Clinicians' experiences from the field

Lindsey Martin, Joseph Mignogna, Juliette Mott, Natalie Hundt, Michael Kauth, Mark Kunik, Aanand Naik, Jeffrey Cully

S3 Clinician competence: Natural variation, factors affecting, and effect on patient outcomes

Alan McGuire, Dominique White, Tom Bartholomew, John McGrew, Lauren Luther, Angie Rollins, Michelle Salyers

S4 Exploring the multifaceted nature of sustainability in community-based prevention: A mixed-method approach

Brittany Cooper, Angie Funaiole

S5 Theory informed behavioral health integration in primary care: Mixed methods evaluation of the implementation of routine depression and alcohol screening and assessment

Julie Richards, Amy Lee, Gwen Lapham, Ryan Caldeiro, Paula Lozano, Tory Gildred, Carol Achtmeyer, Evette Ludman, Megan Addis, Larry Marx, Katharine Bradley

S6 Enhancing the evidence for specialty mental health probation through a hybrid efficacy and implementation study

Tonya VanDeinse, Amy Blank Wilson, Burgin Stacey, Byron Powell, Alicia Bunger, Gary Cuddeback

S7 Personalizing evidence-based child mental health care within a fiscally mandated policy reform

Miya Barnett, Nicole Stadnick, Lauren Brookman-Frazee, Anna Lau

S8 Leveraging an existing resource for technical assistance: Community-based supervisors in public mental health

Shannon Dorsey, Michael Pullmann

S9 SBIRT implementation for adolescents in urban federally qualified health centers: Implementation outcomes

Shannon Mitchell, Robert Schwartz, Arethusa Kirk, Kristi Dusek, Marla Oros, Colleen Hosler, Jan Gryczynski, Carolina Barbosa, Laura Dunlap, David Lounsbury, Kevin O'Grady, Barry Brown

S10 PANEL: Tailoring Implementation Strategies to Context - Expert recommendations for tailoring strategies to context

Laura Damschroder, Thomas Waltz, Byron Powell

S11 PANEL: Tailoring Implementation Strategies to Context - Extreme facilitation: Helping challenged healthcare settings implement complex programs

Mona Ritchie

S12 PANEL: Tailoring Implementation Strategies to Context - Using menu-based choice tasks to obtain expert recommendations for implementing three high-priority practices in the VA

Thomas Waltz

S13 PANEL: The Use of Technology to Improve Efficient Monitoring of Implementation of Evidence-based Programs - Siri, rate my therapist: Using technology to automate fidelity ratings of motivational interviewing

David Atkins, Zac E. Imel, Bo Xiao, Doğan Can, Panayiotis Georgiou, Shrikanth Narayanan

S14 PANEL: The Use of Technology to Improve Efficient Monitoring of Implementation of Evidence-based Programs - Identifying indicators of implementation quality for computer-based ratings

Cady Berkel, Carlos Gallo, Irwin Sandler, C. Hendricks Brown, Sharlene Wolchik, Anne Marie Mauricio

S15 PANEL: The Use of Technology to Improve Efficient Monitoring of Implementation of Evidence-based Programs - Improving implementation of behavioral interventions by monitoring emotion in spoken speech

Carlos Gallo, C. Hendricks Brown, Sanjay Mehrotra

S16 Scorecards and dashboards to assure data quality of health management information system (HMIS) using R

Dharmendra Chandurkar, Siddhartha Bora, Arup Das, Anand Tripathi, Niranjan Saggurti, Anita Raj

S17 A big data approach for discovering and implementing patient safety insights

Eric Hughes, Brian Jacobs, Eric Kirkendall

S18 Improving the efficacy of a depression registry for use in a collaborative care model

Danielle Loeb, Katy Trinkley, Michael Yang, Andrew Sprowell, Donald Nease

S19 Measurement feedback systems as a strategy to support implementation of measurement-based care in behavioral health

Aaron Lyon, Cara Lewis, Meredith Boyd, Abigail Melvin, Semret Nicodimos, Freda Liu, Nathanial Jungbluth

S20 PANEL: Implementation Science and Learning Health Systems: Intersections and Commonalities - Common loop assay: Methods of supporting learning collaboratives

Allen Flynn

S21 PANEL: Implementation Science and Learning Health Systems: Intersections and Commonalities - Innovating audit and feedback using message tailoring models for learning health systems

Zach Landis-Lewis

S22 PANEL: Implementation Science and Learning Health Systems: Intersections and Commonalities - Implementation science and learning health systems: Connecting the dots

Anne Sales

S23 Facilitation activities of Critical Access Hospitals during TeamSTEPPS implementation

Jure Baloh, Marcia Ward, Xi Zhu

S24 Organizational and social context of federally qualified health centers and variation in maternal depression outcomes

Ian Bennett, Jurgen Unutzer, Johnny Mao, Enola Proctor, Mindy Vredevoogd, Ya-Fen Chan, Nathaniel Williams, Phillip Green

S25 Decision support to enhance treatment of hospitalized smokers: A randomized trial

Steven Bernstein, June-Marie Rosner, Michelle DeWitt, Jeanette Tetrault, James Dziura, Allen Hsiao, Scott Sussman, Patrick O’Connor, Benjamin Toll

S26 PANEL: Developing Sustainable Strategies for the Implementation of Patient-Centered Care across Diverse US Healthcare Systems - A patient-centered approach to successful community transition after catastrophic injury

Michael Jones, Julie Gassaway

S27 PANEL: Developing Sustainable Strategies for the Implementation of Patient-Centered Care across Diverse US Healthcare Systems - Conducting PCOR to integrate mental health and cancer screening services in primary care

Jonathan Tobin

S28 PANEL: Developing Sustainable Strategies for the Implementation of Patient-Centered Care across Diverse US Healthcare Systems - A comparative effectiveness trial of optimal patient-centered care for US trauma care systems

Douglas Zatzick

S29 Preferences for in-person communication among patients in a multi-center randomized study of in-person versus telephone communication of genetic test results for cancer susceptibility

Angela R Bradbury, Linda Patrick-Miller, Brian Egleston, Olufunmilayo I Olopade, Michael J Hall, Mary B Daly, Linda Fleisher, Generosa Grana, Pamela Ganschow, Dominique Fetzer, Amanda Brandt, Dana Farengo-Clark, Andrea Forman, Rikki S Gaber, Cassandra Gulden, Janice Horte, Jessica Long, Rachelle Lorenz Chambers, Terra Lucas, Shreshtha Madaan, Kristin Mattie, Danielle McKenna, Susan Montgomery, Sarah Nielsen, Jacquelyn Powers, Kim Rainey, Christina Rybak, Michelle Savage, Christina Seelaus, Jessica Stoll, Jill Stopfer, Shirley Yao and Susan Domchek

S30 Working towards de-implementation: A mixed methods study in breast cancer surveillance care

Erin Hahn, Corrine Munoz-Plaza, Jianjin Wang, Jazmine Garcia Delgadillo, Brian Mittman Michael Gould

S31Integrating evidence-based practices for increasing cancer screenings in safety-net primary care systems: A multiple case study using the consolidated framework for implementation research

Shuting (Lily) Liang, Michelle C. Kegler, Megan Cotter, Emily Phillips, April Hermstad, Rentonia Morton, Derrick Beasley, Jeremy Martinez, Kara Riehman

S32 Observations from implementing an mHealth intervention in an FQHC

David Gustafson, Lisa Marsch, Louise Mares, Andrew Quanbeck, Fiona McTavish, Helene McDowell, Randall Brown, Chantelle Thomas, Joseph Glass, Joseph Isham, Dhavan Shah

S33 A multicomponent intervention to improve primary care provider adherence to chronic opioid therapy guidelines and reduce opioid misuse: A cluster randomized controlled trial protocol

Jane Liebschutz, Karen Lasser

S34 Implementing collaborative care for substance use disorders in primary care: Preliminary findings from the summit study

Katherine Watkins, Allison Ober, Sarah Hunter, Karen Lamp, Brett Ewing

S35 Sustaining a task-shifting strategy for blood pressure control in Ghana: A stakeholder analysis

Juliet Iwelunmor, Joyce Gyamfi, Sarah Blackstone, Nana Kofi Quakyi, Jacob Plange-Rhule, Gbenga Ogedegbe

S36 Contextual adaptation of the consolidated framework for implementation research (CFIR) in a tobacco cessation study in Vietnam

Pritika Kumar, Nancy Van Devanter, Nam Nguyen, Linh Nguyen, Trang Nguyen, Nguyet Phuong, Donna Shelley

S37 Evidence check: A knowledge brokering approach to systematic reviews for policy

Sian Rudge

S38 Using Evidence Synthesis to Strengthen Complex Health Systems in Low- and Middle-Income Countries

Etienne Langlois

S39 Does it matter: timeliness or accuracy of results? The choice of rapid reviews or systematic reviews to inform decision-making

Andrea Tricco

S40 Evaluation of the veterans choice program using lean six sigma at a VA medical center to identify benefits and overcome obstacles

Sherry Ball, Anne Lambert-Kerzner, Christine Sulc, Carol Simmons, Jeneen Shell-Boyd, Taryn Oestreich, Ashley O'Connor, Emily Neely, Marina McCreight, Amy Labebue, Doreen DiFiore, Diana Brostow, P. Michael Ho, David Aron

S41 The influence of local context on multi-stakeholder alliance quality improvement activities: A multiple case study

Jillian Harvey, Megan McHugh, Dennis Scanlon

S42 Increasing physical activity in early care and education: Sustainability via active garden education (SAGE)

Rebecca Lee, Erica Soltero, Nathan Parker, Lorna McNeill, Tracey Ledoux

S43 Marking a decade of policy implementation: The successes and continuing challenges of a provincial school food and nutrition policy in Canada

Jessie-Lee McIsaac, Kate MacLeod, Nicole Ata, Sherry Jarvis, Sara Kirk

S44 Use of research evidence among state legislators who prioritize mental health and substance abuse issues

Jonathan Purtle, Elizabeth Dodson, Ross Brownson

S45 PANEL: Effectiveness-Implementation Hybrid Designs: Clarifications, Refinements, and Additional Guidance Based on a Systematic Review and Reports from the Field - Hybrid type 1 designs

Brian Mittman, Geoffrey Curran

S46 PANEL: Effectiveness-Implementation Hybrid Designs: Clarifications, Refinements, and Additional Guidance Based on a Systematic Review and Reports from the Field - Hybrid type 2 designs

Geoffrey Curran

S47 PANEL: Effectiveness-Implementation Hybrid Designs: Clarifications, Refinements, and Additional Guidance Based on a Systematic Review and Reports from the Field - Hybrid type 3 designs

Jeffrey Pyne

S48 Linking team level implementation leadership and implementation climate to individual level attitudes, behaviors, and implementation outcomes

Gregory Aarons, Mark Ehrhart, Elisa Torres

S49 Pinpointing the specific elements of local context that matter most to implementation outcomes: Findings from qualitative comparative analysis in the RE-inspire study of VA acute stroke care

Edward Miech

S50 The GO score: A new context-sensitive instrument to measure group organization level for providing and improving care

Edward Miech

S51 A research network approach for boosting implementation and improvement

Kathleen Stevens, I.S.R.N. Steering Council

S52 PANEL: Qualitative methods in D&I Research: Value, rigor and challenge - The value of qualitative methods in implementation research

Alison Hamilton

S53 PANEL: Qualitative methods in D&I Research: Value, rigor and challenge - Learning evaluation: The role of qualitative methods in dissemination and implementation research

Deborah Cohen

S54 PANEL: Qualitative methods in D&I Research: Value, rigor and challenge - Qualitative methods in D&I research

Deborah Padgett

S55 PANEL: Maps & models: The promise of network science for clinical D&I - Hospital network of sharing patients with acute and chronic diseases in California

Alexandra Morshed

S56 PANEL: Maps & models: The promise of network science for clinical D&I - The use of social network analysis to identify dissemination targets and enhance D&I research study recruitment for pre-exposure prophylaxis for HIV (PrEP) among men who have sex with men

Rupa Patel

S57 PANEL: Maps & models: The promise of network science for clinical D&I - Network and organizational factors related to the adoption of patient navigation services among rural breast cancer care providers

Beth Prusaczyk

S58 A theory of de-implementation based on the theory of healthcare professionals’ behavior and intention (THPBI) and the becker model of unlearning

David C. Aron, Divya Gupta, Sherry Ball

S59 Observation of registered dietitian nutritionist-patient encounters by dietetic interns highlights low awareness and implementation of evidence-based nutrition practice guidelines

Rosa Hand, Jenica Abram, Taylor Wolfram

S60 Program sustainability action planning: Building capacity for program sustainability using the program sustainability assessment tool

Molly Hastings, Sarah Moreland-Russell

S61 A review of D&I study designs in published study protocols

Rachel Tabak, Alex Ramsey, Ana Baumann, Emily Kryzer, Katherine Montgomery, Ericka Lewis, Margaret Padek, Byron Powell, Ross Brownson

S62 PANEL: Geographic variation in the implementation of public health services: Economic, organizational, and network determinants - Model simulation techniques to estimate the cost of implementing foundational public health services

Cezar Brian Mamaril, Glen Mays, Keith Branham, Lava Timsina

S63 PANEL: Geographic variation in the implementation of public health services: Economic, organizational, and network determinants - Inter-organizational network effects on the implementation of public health services

Glen Mays, Rachel Hogg

S64 PANEL: Building capacity for implementation and dissemination of the communities that care prevention system at scale to promote evidence-based practices in behavioral health - Implementation fidelity, coalition functioning, and community prevention system transformation using communities that care

Abigail Fagan, Valerie Shapiro, Eric Brown

S65 PANEL: Building capacity for implementation and dissemination of the communities that care prevention system at scale to promote evidence-based practices in behavioral health - Expanding capacity for implementation of communities that care at scale using a web-based, video-assisted training system

Kevin Haggerty, David Hawkins

S66 PANEL: Building capacity for implementation and dissemination of the communities that care prevention system at scale to promote evidence-based practices in behavioral health - Effects of communities that care on reducing youth behavioral health problems

Sabrina Oesterle, David Hawkins, Richard Catalano

S68 When interventions end: the dynamics of intervention de-adoption and replacement

Virginia McKay, M. Margaret Dolcini, Lee Hoffer

S69 Results from next-d: can a disease specific health plan reduce incident diabetes development among a national sample of working-age adults with pre-diabetes?

Tannaz Moin, Jinnan Li, O. Kenrik Duru, Susan Ettner, Norman Turk, Charles Chan, Abigail Keckhafer, Robert Luchs, Sam Ho, Carol Mangione

S70 Implementing smoking cessation interventions in primary care settings (STOP): using the interactive systems framework

Peter Selby, Laurie Zawertailo, Nadia Minian, Dolly Balliunas, Rosa Dragonetti, Sarwar Hussain, Julia Lecce

S71 Testing the Getting To Outcomes implementation support intervention in prevention-oriented, community-based settings

Matthew Chinman, Joie Acosta, Patricia Ebener, Patrick S Malone, Mary Slaughter

S72 Examining the reach of a multi-component farmers’ market implementation approach among low-income consumers in an urban context

Darcy Freedman, Susan Flocke, Eunlye Lee, Kristen Matlack, Erika Trapl, Punam Ohri-Vachaspati, Morgan Taggart, Elaine Borawski

S73 Increasing implementation of evidence-based health promotion practices at large workplaces: The CEOs Challenge

Amanda Parrish, Jeffrey Harris, Marlana Kohn, Kristen Hammerback, Becca McMillan, Peggy Hannon

S74 A qualitative assessment of barriers to nutrition promotion and obesity prevention in childcare

Taren Swindle, Geoffrey Curran, Leanne Whiteside-Mansell, Wendy Ward

S75 Documenting institutionalization of a health communication intervention in African American churches

Cheryl Holt, Sheri Lou Santos, Erin Tagai, Mary Ann Scheirer, Roxanne Carter, Janice Bowie, Muhiuddin Haider, Jimmie Slade, Min Qi Wang

S76 Reduction in hospital utilization by underserved patients through use of a community-medical home

Andrew Masica, Gerald Ogola, Candice Berryman, Kathleen Richter

S77 Sustainability of evidence-based lay health advisor programs in African American communities: A mixed methods investigation of the National Witness Project

Rachel Shelton, Lina Jandorf, Deborah Erwin

S78 Predicting the long-term uninsured population and analyzing their gaps in physical access to healthcare in South Carolina

Khoa Truong

S79 Using an evidence-based parenting intervention in churches to prevent behavioral problems among Filipino youth: A randomized pilot study

Joyce R. Javier, Dean Coffey, Sheree M. Schrager, Lawrence Palinkas, Jeanne Miranda

S80 Sustainability of elementary school-based health centers in three health-disparate southern communities

Veda Johnson, Valerie Hutcherson, Ruth Ellis

S81 Childhood obesity prevention partnership in Louisville: creative opportunities to engage families in a multifaceted approach to obesity prevention

Anna Kharmats, Sandra Marshall-King, Monica LaPradd, Fannie Fonseca-Becker

S82 Improvements in cervical cancer prevention found after implementation of evidence-based Latina prevention care management program

Deanna Kepka, Julia Bodson, Echo Warner, Brynn Fowler

S83 The OneFlorida data trust: Achieving health equity through research & training capacity building

Elizabeth Shenkman, William Hogan, Folakami Odedina, Jessica De Leon, Monica Hooper, Olveen Carrasquillo, Renee Reams, Myra Hurt, Steven Smith, Jose Szapocznik, David Nelson, Prabir Mandal

S84 Disseminating and sustaining medical-legal partnerships: Shared value and social return on investment

James Teufel

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Bernstein SL, Rosner J, DeWitt M, Hsiao A, Dziura J, Toll B. Design and implementation of decision support for tobacco dependence treatment in an inpatient electronic medical record. Implement Sci 2015;10 Suppl 1:A1-I1. [PMID: 26329822 PMCID: PMC4934000 DOI: 10.1186/1748-5908-10-s1-a1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open

Ng R, Fillet P, DeWitt M, Heyman GD, Bellugi U. Reasoning About Trust Among Individuals With Williams Syndrome. Am J Intellect Dev Disabil 2015;120:527-541. [PMID: 26505873 DOI: 10.1352/1944-7558-120.6.527] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]