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Papadakis VM, Cheimonidi C, Panagopoulou M, Karaglani M, Apalaki P, Katsara K, Kenanakis G, Theodosiou T, Constantinidis TC, Stratigi K, Chatzaki E. Label-Free Human Disease Characterization through Circulating Cell-Free DNA Analysis Using Raman Spectroscopy. Int J Mol Sci 2023; 24:12384. [PMID: 37569759 PMCID: PMC10418917 DOI: 10.3390/ijms241512384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 07/30/2023] [Accepted: 08/01/2023] [Indexed: 08/13/2023] Open
Abstract
Circulating cell-free DNA (ccfDNA) is a liquid biopsy biomaterial attracting significant attention for the implementation of precision medicine diagnostics. Deeper knowledge related to its structure and biology would enable the development of such applications. In this study, we employed Raman spectroscopy to unravel the biomolecular profile of human ccfDNA in health and disease. We established reference Raman spectra of ccfDNA samples from healthy males and females with different conditions, including cancer and diabetes, extracting information about their chemical composition. Comparative observations showed a distinct spectral pattern in ccfDNA from breast cancer patients taking neoadjuvant therapy. Raman analysis of ccfDNA from healthy, prediabetic, and diabetic males uncovered some differences in their biomolecular fingerprints. We also studied ccfDNA released from human benign and cancer cell lines and compared it to their respective gDNA, confirming it mirrors its cellular origin. Overall, we explored for the first time Raman spectroscopy in the study of ccfDNA and provided spectra of samples from different sources. Our findings introduce Raman spectroscopy as a new approach to implementing liquid biopsy diagnostics worthy of further elaboration.
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Affiliation(s)
- Vassilis M. Papadakis
- Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology, 70013 Heraklion, Greece; (V.M.P.); (C.C.); (P.A.); (K.S.)
- Department of Industrial Design and Production Engineering, University of West Attica, 12244 Athens, Greece
- Institute of Agri-Food and Life Sciences, University Research & Innovation Center, Hellenic Mediterranean University, 71410 Heraklion, Greece; (M.P.); (M.K.)
| | - Christina Cheimonidi
- Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology, 70013 Heraklion, Greece; (V.M.P.); (C.C.); (P.A.); (K.S.)
- Institute of Agri-Food and Life Sciences, University Research & Innovation Center, Hellenic Mediterranean University, 71410 Heraklion, Greece; (M.P.); (M.K.)
| | - Maria Panagopoulou
- Institute of Agri-Food and Life Sciences, University Research & Innovation Center, Hellenic Mediterranean University, 71410 Heraklion, Greece; (M.P.); (M.K.)
- Laboratory of Pharmacology, Medical School, Democritus University of Thrace, 68100 Alexandroupolis, Greece;
| | - Makrina Karaglani
- Institute of Agri-Food and Life Sciences, University Research & Innovation Center, Hellenic Mediterranean University, 71410 Heraklion, Greece; (M.P.); (M.K.)
- Laboratory of Pharmacology, Medical School, Democritus University of Thrace, 68100 Alexandroupolis, Greece;
| | - Paraskevi Apalaki
- Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology, 70013 Heraklion, Greece; (V.M.P.); (C.C.); (P.A.); (K.S.)
| | - Klytaimnistra Katsara
- Institute of Electronic Structure and Laser, Foundation for Research and Technology-Hellas, N. Plastira 100, Vasilika Vouton, 70013 Heraklion, Greece (G.K.)
- Department of Agriculture, Hellenic Mediterranean University—Hellas, Estavromenos, 71410 Heraklion, Greece
| | - George Kenanakis
- Institute of Electronic Structure and Laser, Foundation for Research and Technology-Hellas, N. Plastira 100, Vasilika Vouton, 70013 Heraklion, Greece (G.K.)
| | - Theodosis Theodosiou
- Laboratory of Pharmacology, Medical School, Democritus University of Thrace, 68100 Alexandroupolis, Greece;
| | - Theodoros C. Constantinidis
- Laboratory of Hygiene and Environmental Protection, Medical School, Democritus University of Thrace, 68100 Alexandroupolis, Greece;
| | - Kalliopi Stratigi
- Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology, 70013 Heraklion, Greece; (V.M.P.); (C.C.); (P.A.); (K.S.)
| | - Ekaterini Chatzaki
- Institute of Agri-Food and Life Sciences, University Research & Innovation Center, Hellenic Mediterranean University, 71410 Heraklion, Greece; (M.P.); (M.K.)
- Laboratory of Pharmacology, Medical School, Democritus University of Thrace, 68100 Alexandroupolis, Greece;
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Karzi V, Tzatzarakis MN, Alegakis A, Vakonaki E, Fragkiadoulaki I, Kaloudis K, Chalkiadaki C, Apalaki P, Panagiotopoulou M, Kalliantasi A, Kouretas D, Docea AO, Calina D, Tsatsakis A. In Vivo Estimation of the Biological Effects of Endocrine Disruptors in Rabbits after Combined and Long-Term Exposure: Study Protocol. Toxics 2022; 10:toxics10050246. [PMID: 35622659 PMCID: PMC9148075 DOI: 10.3390/toxics10050246] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Revised: 05/03/2022] [Accepted: 05/10/2022] [Indexed: 01/25/2023]
Abstract
Recently, an increasing number of chemical compounds are being characterized as endocrine disruptors since they have been proven to interact with the endocrine system, which plays a crucial role in the maintenance of homeostasis. Glyphosate is the active substance of the herbicide Roundup®, bisphenol A (BPA) and di (2-ethylhexyl) phthalate (DEHP) are used as plasticizers, while triclosan (TCS), methyl (MePB), propyl (PrPB), and butyl (BuPB) parabens are used as antimicrobial agents and preservatives mainly in personal care products. Studies indicate that exposure to these substances can affect humans causing developmental problems and problems in the endocrine, reproductive, nervous, immune, and respiratory systems. Although there are copious studies related to these substances, there are few in vivo studies related to combined exposure to these endocrine disruptors. The aim of the present pilot study is the investigation and assessment of the above substances’ toxicity in rabbits after twelve months of exposure to glyphosate (both pure and commercial form) and to a mixture of all the above substances at subtoxic levels. The lack of data from the literature concerning rabbits’ exposure to these substances and the restrictions of the 3Rs Principle will result in a limited number of animals available for use (four animals per group, twenty animals in total).
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Affiliation(s)
- Vasiliki Karzi
- Center of Toxicology, Medicine School, University of Crete, 70013 Heraklion, Greece; (V.K.); (M.N.T.); (A.A.); (E.V.); (I.F.); (K.K.); (C.C.); (P.A.); (M.P.); (A.K.)
| | - Manolis N. Tzatzarakis
- Center of Toxicology, Medicine School, University of Crete, 70013 Heraklion, Greece; (V.K.); (M.N.T.); (A.A.); (E.V.); (I.F.); (K.K.); (C.C.); (P.A.); (M.P.); (A.K.)
| | - Athanasios Alegakis
- Center of Toxicology, Medicine School, University of Crete, 70013 Heraklion, Greece; (V.K.); (M.N.T.); (A.A.); (E.V.); (I.F.); (K.K.); (C.C.); (P.A.); (M.P.); (A.K.)
| | - Elena Vakonaki
- Center of Toxicology, Medicine School, University of Crete, 70013 Heraklion, Greece; (V.K.); (M.N.T.); (A.A.); (E.V.); (I.F.); (K.K.); (C.C.); (P.A.); (M.P.); (A.K.)
| | - Irene Fragkiadoulaki
- Center of Toxicology, Medicine School, University of Crete, 70013 Heraklion, Greece; (V.K.); (M.N.T.); (A.A.); (E.V.); (I.F.); (K.K.); (C.C.); (P.A.); (M.P.); (A.K.)
| | - Konstantinos Kaloudis
- Center of Toxicology, Medicine School, University of Crete, 70013 Heraklion, Greece; (V.K.); (M.N.T.); (A.A.); (E.V.); (I.F.); (K.K.); (C.C.); (P.A.); (M.P.); (A.K.)
| | - Christina Chalkiadaki
- Center of Toxicology, Medicine School, University of Crete, 70013 Heraklion, Greece; (V.K.); (M.N.T.); (A.A.); (E.V.); (I.F.); (K.K.); (C.C.); (P.A.); (M.P.); (A.K.)
| | - Paraskevi Apalaki
- Center of Toxicology, Medicine School, University of Crete, 70013 Heraklion, Greece; (V.K.); (M.N.T.); (A.A.); (E.V.); (I.F.); (K.K.); (C.C.); (P.A.); (M.P.); (A.K.)
| | - Maria Panagiotopoulou
- Center of Toxicology, Medicine School, University of Crete, 70013 Heraklion, Greece; (V.K.); (M.N.T.); (A.A.); (E.V.); (I.F.); (K.K.); (C.C.); (P.A.); (M.P.); (A.K.)
| | - Aikaterini Kalliantasi
- Center of Toxicology, Medicine School, University of Crete, 70013 Heraklion, Greece; (V.K.); (M.N.T.); (A.A.); (E.V.); (I.F.); (K.K.); (C.C.); (P.A.); (M.P.); (A.K.)
| | - Demetrios Kouretas
- Department of Biochemistry and Biotechnology, University of Thessaly, Viopolis, Mezourlo, 41500 Larissa, Greece;
| | - Anca Oana Docea
- Department of Clinical Pharmacy, University of Medicine and Pharmacy of Craiova, 200349 Craiova, Romania
- Correspondence: (A.O.D.); (D.C.); (A.T.)
| | - Daniela Calina
- Department of Toxicology, University of Medicine and Pharmacy of Craiova, 200349 Craiova, Romania
- Correspondence: (A.O.D.); (D.C.); (A.T.)
| | - Aristidis Tsatsakis
- Center of Toxicology, Medicine School, University of Crete, 70013 Heraklion, Greece; (V.K.); (M.N.T.); (A.A.); (E.V.); (I.F.); (K.K.); (C.C.); (P.A.); (M.P.); (A.K.)
- Correspondence: (A.O.D.); (D.C.); (A.T.)
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Nikolouzakis TK, Stivaktakis PD, Apalaki P, Kalliantasi K, Sapsakos TM, Spandidos DA, Tsatsakis A, Souglakos J, Tsiaoussis J. Effect of systemic treatment on the micronuclei frequency in the peripheral blood of patients with metastatic colorectal cancer. Oncol Lett 2019; 17:2703-2712. [PMID: 30854044 PMCID: PMC6365930 DOI: 10.3892/ol.2019.9895] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Accepted: 12/12/2018] [Indexed: 12/31/2022] Open
Abstract
Colorectal cancer (CRC) is the third most diagnosed type of cancer affecting males, and the second most diagnosed type of cancer affecting females, and one of the leading causes of cancer-related mortality globally. The estimation of the micronuclei (MN) frequency in peripheral blood lymphocytes (PBLs) from patients with CRC is proposed as a prognostic/predictive easy-to-use biomarker. In this study, we aimed to investigate the effects of systemic treatment on the MN frequency in PBLs from patients with CRC in order to determine the effectiveness of the MN frequency as a biomarker. For this purpose, from 2016 to 2018, we quantified the MN frequency as a prognostic/predictive biomarker in serial samples from 25 patients with metastatic CRC (mCRC) using cytokinesis block micronucleus assay (CBMN assay). The MN frequency in the PBLs of the patients was evaluated before, during the middle and at the end of the therapy (approximately 0, 3 and 6 months). The results revealed a common pattern regarding the fluctuation in the MN frequency. Statistical analysis confirmed that when the disease response was estimated with radiological criteria, a good response was depicted at the MN frequency and vice versa. Consequently, the findings of this study suggest that the MN frequency may serve as a promising prognostic/predictive biomarker for the monitoring of the treatment response of patients with CRC.
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Affiliation(s)
| | | | - Paraskevi Apalaki
- Department of Forensic Sciences and Toxicology, Medical School, University of Crete, 71003 Heraklion, Greece
| | - Katerina Kalliantasi
- Department of Forensic Sciences and Toxicology, Medical School, University of Crete, 71003 Heraklion, Greece
| | - Theodoros Mariolis Sapsakos
- Laboratory of Anatomy and Histology, Nursing School, National and Kapodistrian University of Athens, 11527 Athens, Greece
| | - Demetrios A Spandidos
- Laboratory of Clinical Virology, Medical School, University of Crete, 71003 Heraklion, Greece
| | - Aristidis Tsatsakis
- Department of Forensic Sciences and Toxicology, Medical School, University of Crete, 71003 Heraklion, Greece
| | - John Souglakos
- Department of Medical Oncology, University General Hospital of Heraklion, 71110 Heraklion, Greece
| | - John Tsiaoussis
- Laboratory of Anatomy-Histology-Embryology, Medical School, University of Crete, 71110 Heraklion, Greece
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Apalaki P, Kalliantasi A, Nikolouzakis T, Fragkiadoulaki I, Stivaktakis P, Karkala F, Vaki G, Tsiaousis I, Tsatsakis A. The frequency of micronuclei, subsequent to administration of chemotherapeutic medicines in colon and rectal cancer. Toxicol Lett 2017. [DOI: 10.1016/j.toxlet.2017.07.348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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