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Cabral S, Restrepo D, Kanjee Z, Wilson P, Crowe B, Abdulnour RE, Rodman A. Clinical Reasoning of a Generative Artificial Intelligence Model Compared With Physicians. JAMA Intern Med 2024; 184:581-583. [PMID: 38557971 PMCID: PMC10985627 DOI: 10.1001/jamainternmed.2024.0295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 01/16/2024] [Indexed: 04/04/2024]
Abstract
This cross-sectional study assesses the ability of a large language model to process medical data and display clinical reasoning compared with the ability of attending physicians and residents.
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Affiliation(s)
- Stephanie Cabral
- Department of Medicine, Beth Israel Deaconess Medical Center, Boston, Massachusetts
| | - Daniel Restrepo
- Department of Medicine, Massachusetts General Hospital, Boston
| | - Zahir Kanjee
- Department of Medicine, Beth Israel Deaconess Medical Center, Boston, Massachusetts
| | - Philip Wilson
- Department of Medicine, Beth Israel Deaconess Medical Center, Boston, Massachusetts
| | - Byron Crowe
- Department of Medicine, Beth Israel Deaconess Medical Center, Boston, Massachusetts
| | - Raja-Elie Abdulnour
- Department of Pulmonary and Critical Care, Brigham and Women’s Hospital, Boston, Massachusetts
| | - Adam Rodman
- Department of Medicine, Beth Israel Deaconess Medical Center, Boston, Massachusetts
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Restrepo D, Rodman A, Abdulnour RE. Conversations on reasoning: Large language models in diagnosis. J Hosp Med 2024. [PMID: 38678438 DOI: 10.1002/jhm.13378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 04/11/2024] [Indexed: 04/30/2024]
Affiliation(s)
- Daniel Restrepo
- Department of Medicine, Massachusetts General Hospital, Boston, Massachusetts, USA
- Harvard Medical School, Boston, Massachusetts, USA
| | - Adam Rodman
- Harvard Medical School, Boston, Massachusetts, USA
- Department of Medicine, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA
| | - Raja-Elie Abdulnour
- Harvard Medical School, Boston, Massachusetts, USA
- Department of Medicine, Brigham and Women's Hospital, Boston, Massachusetts, USA
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Kilic A, Halu A, De Marzio M, Maiorino E, Duvall MG, Bruggemann TR, Rojas Quintero JJ, Chase R, Mirzakhani H, Sungur AÖ, Koepke J, Nakano T, Peh HY, Krishnamoorthy N, Abdulnour RE, Georgopoulos K, Litonjua AA, Demay M, Renz H, Levy BD, Weiss ST. Vitamin D constrains inflammation by modulating the expression of key genes on Chr17q12-21.1. eLife 2024; 12:RP89270. [PMID: 38567749 PMCID: PMC10990493 DOI: 10.7554/elife.89270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2024] Open
Abstract
Vitamin D possesses immunomodulatory functions and vitamin D deficiency has been associated with the rise in chronic inflammatory diseases, including asthma (Litonjua and Weiss, 2007). Vitamin D supplementation studies do not provide insight into the molecular genetic mechanisms of vitamin D-mediated immunoregulation. Here, we provide evidence for vitamin D regulation of two human chromosomal loci, Chr17q12-21.1 and Chr17q21.2, reliably associated with autoimmune and chronic inflammatory diseases. We demonstrate increased vitamin D receptor (Vdr) expression in mouse lung CD4+ Th2 cells, differential expression of Chr17q12-21.1 and Chr17q21.2 genes in Th2 cells based on vitamin D status and identify the IL-2/Stat5 pathway as a target of vitamin D signaling. Vitamin D deficiency caused severe lung inflammation after allergen challenge in mice that was prevented by long-term prenatal vitamin D supplementation. Mechanistically, vitamin D induced the expression of the Ikzf3-encoded protein Aiolos to suppress IL-2 signaling and ameliorate cytokine production in Th2 cells. These translational findings demonstrate mechanisms for the immune protective effect of vitamin D in allergic lung inflammation with a strong molecular genetic link to the regulation of both Chr17q12-21.1 and Chr17q21.2 genes and suggest further functional studies and interventional strategies for long-term prevention of asthma and other autoimmune disorders.
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Affiliation(s)
- Ayse Kilic
- Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical SchoolBostonUnited States
| | - Arda Halu
- Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical SchoolBostonUnited States
| | - Margherita De Marzio
- Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical SchoolBostonUnited States
- Department of Environmental Health, Harvard TH Chan School of Public HealthBostonUnited States
| | - Enrico Maiorino
- Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical SchoolBostonUnited States
| | - Melody G Duvall
- Division of Pulmonary and Critical Care Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical SchoolBostonUnited States
| | - Thayse Regina Bruggemann
- Division of Pulmonary and Critical Care Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical SchoolBostonUnited States
| | - Joselyn J Rojas Quintero
- Division of Pulmonary and Critical Care Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical SchoolBostonUnited States
| | - Robert Chase
- Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical SchoolBostonUnited States
| | - Hooman Mirzakhani
- Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical SchoolBostonUnited States
| | - Ayse Özge Sungur
- Behavioral Neuroscience, Experimental and Biological Psychology, Philipps-UniversityMarburgGermany
- Excellence Cluster Cardio-Pulmonary System (ECCPS), Justus Liebig University GiessenGiessenGermany
| | - Janine Koepke
- Excellence Cluster Cardio-Pulmonary System (ECCPS), Justus Liebig University GiessenGiessenGermany
| | - Taiji Nakano
- Department of Pediatrics, Graduate School of Medicine, Chiba UniversityChibaJapan
| | - Hong Yong Peh
- Division of Pulmonary and Critical Care Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical SchoolBostonUnited States
| | - Nandini Krishnamoorthy
- Division of Pulmonary and Critical Care Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical SchoolBostonUnited States
| | - Raja-Elie Abdulnour
- Division of Pulmonary and Critical Care Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical SchoolBostonUnited States
| | - Katia Georgopoulos
- Cutaneous Biology Research Center, Massachusetts General Hospital and Harvard Medical SchoolBostonUnited States
| | - Augusto A Litonjua
- Division of Pediatric Pulmonary Medicine, Golisano Children’s Hospital at Strong, University of Rochester Medical CenterRochesterUnited States
| | - Marie Demay
- Endocrine Unit, Massachusetts General Hospital and Harvard Medical SchoolBostonUnited States
| | - Harald Renz
- Institute of Laboratory Medicine and Pathobiochemistry, Molecular Diagnostics, Philipps University of Marburg and German Center for Lung Research (DZL)MarburgGermany
- Department of Clinical Immunology and Allergology, Laboratory of Immunopathology Sechenov UniversityMoscowRussian Federation
| | - Bruce D Levy
- Division of Pulmonary and Critical Care Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical SchoolBostonUnited States
| | - Scott T Weiss
- Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical SchoolBostonUnited States
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Yan C, Wang X, Liu Y, Abdulnour RE, Wu M, Gao H. Protective Role of Rho Guanosine Diphosphate Dissociation Inhibitor, Ly-GDI, in Pulmonary Alveolitis. PLoS One 2015; 10:e0140804. [PMID: 26469087 PMCID: PMC4607448 DOI: 10.1371/journal.pone.0140804] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2015] [Accepted: 09/30/2015] [Indexed: 11/18/2022] Open
Abstract
Growing evidences indicate that Ly-GDI, an inhibitory protein of Rho GTPases, plays an essential role in regulating actin cytoskeletal alteration which is indispensible for the process such as phagocytosis. However, the role of Ly-GDI in inflammation remains largely unknown. In the current study, we found that Ly-GDI expression was significantly decreased in the IgG immune complex-injured lungs. To determine if Ly-GDI might regulate the lung inflammatory response, we constructed adenovirus vectors that could mediate ectopic expression of Ly-GDI (Adeno-Ly-GDI). In vivo mouse lung expression of Ly-GDI resulted in a significant attenuation of IgG immune complex-induced lung injury, which was due to the decreased pulmonary permeability and lung inflammatory cells, especially neutrophil accumulation. Upon IgG immune complex deposition, mice with Ly-GDI over-expression in the lungs produced significant less inflammatory mediators (TNF-α, IL-6, MCP-1, and MIP-1α) in bronchoalveolar lavage fluid when compared control mice receiving airway injection of Adeno-GFP. Mechanically, IgG immune complex-induced NF-κB activity was markedly suppressed by Ly-GDI in both alveolar macrophages and lungs as measured by luciferase assay and electrophoretic mobility shift assay. These findings suggest that Ly-GDI is a critical regulator of inflammatory injury after deposition of IgG immune complexes and that it negatively regulates the lung NF-κB activity.
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Affiliation(s)
- Chunguang Yan
- Department of Anesthesiology, Perioperative&Pain Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America
- Department of Basic Sciences, University of North Dakota, Grand Forks, North Dakota, United States of America
| | - Ximo Wang
- Department of Surgery, Tianjin Nankai Hospital, Tianjin, China
| | - Yanlan Liu
- Department of Anesthesiology, Perioperative&Pain Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America
| | - Raja-Elie Abdulnour
- Pulmonary and Critical Care Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America
| | - Min Wu
- Department of Basic Sciences, University of North Dakota, Grand Forks, North Dakota, United States of America
| | - Hongwei Gao
- Department of Anesthesiology, Perioperative&Pain Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America
- Department of Surgery, Tianjin Nankai Hospital, Tianjin, China
- * E-mail:
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Krishnamoorthy N, Burkett P, Dalli J, Abdulnour RE, Colas R, Ramon S, Phipps R, Petasis N, Kuchroo V, Serhan C, Levy B. Maresin-1 regulates type 2 innate lymphoid cells and promotes generation of regulatory T cells to limit allergic inflammation (HYP2P.336). The Journal of Immunology 2015. [DOI: 10.4049/jimmunol.194.supp.53.17] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Abstract
Asthma is a chronic inflammatory disease that fails to resolve and is classically considered to be mediated by an overzealous CD4+Th2 immune response. Recently, a key role for type 2 innate lymphoid cells (ILC2s) was shown to have an important role in the initiation and amplification of allergic inflammation; however, mechanisms for ILC2 regulation remain to be determined. In this study, metabololipidomics of murine lungs identified temporal changes in the endogenous levels of docosahexaenoic acid (DHA)-derived pro-resolving mediator, maresin 1, (MaR1) during self-limited allergic inflammation to ovalbumin (OVA). MaR1 decreased after allergen challenge relative to levels found during sensitization, and subsequently increased during the resolution of inflammation. Exogenous administration of MaR1 reduced lung inflammation and ILC2 expression of IL-5 and IL-13 and increased amphiregulin. MaR1 augmented de novo generation of regulatory T cells (Tregs), which interacted with ILC2s to markedly suppress cytokine production in a TGF-β-dependent manner. Antibody-mediated depletion of Tregs interrupted MaR1 control of ILC2 expression of IL-13 in vivo. These results point to a pivotal role for Tregs in the control of ILC2s in a new proresolving mechanism engaged by MaR1.
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Affiliation(s)
| | - Patrick Burkett
- 2Brigham and Women's Hosp., Boston, MA
- 1Harvard University, Boston, MA
| | - Jessmond Dalli
- 2Brigham and Women's Hosp., Boston, MA
- 1Harvard University, Boston, MA
| | | | | | - Sesquile Ramon
- 2Brigham and Women's Hosp., Boston, MA
- 1Harvard University, Boston, MA
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