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Batra A, Câmara HB, Joaquim FR, Srivastava R, Valle JWF. Axion Paradigm with Color-Mediated Neutrino Masses. Phys Rev Lett 2024; 132:051801. [PMID: 38364158 DOI: 10.1103/physrevlett.132.051801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Revised: 11/17/2023] [Accepted: 01/02/2024] [Indexed: 02/18/2024]
Abstract
We propose a generalized Kim-Shifman-Vainshtein-Zakharov-type axion framework in which colored fermions and scalars act as two-loop Majorana neutrino-mass mediators. The global Peccei-Quinn symmetry under which exotic fermions are charged solves the strong CP problem. Within our general proposal, various setups can be distinguished by probing the axion-to-photon coupling at helioscopes and haloscopes. We also comment on axion dark-matter production in the early Universe.
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Affiliation(s)
- A Batra
- Departamento de Física and CFTP, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001 Lisboa, Portugal
| | - H B Câmara
- Departamento de Física and CFTP, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001 Lisboa, Portugal
| | - F R Joaquim
- Departamento de Física and CFTP, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001 Lisboa, Portugal
| | - R Srivastava
- Department of Physics, Indian Institute of Science Education and Research-Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462066, India
| | - J W F Valle
- AHEP Group, Institut de Física Corpuscular-CSIC/Universitat de València, Parc Científic de Paterna. C/ Catedrático José Beltrán, 2 E-46980 Paterna (Valencia), Spain
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Srivastava R, Panda SK, Sen Gupta PS, Chaudhary A, Naaz F, Yadav AK, Ram NK, Rana MK, Singh RK, Srivastava R. In silico evaluation of S-adenosyl-L-homocysteine analogs as inhibitors of nsp14-viral cap N7 methyltranferase and PLpro of SARS-CoV-2: synthesis, molecular docking, physicochemical data, ADMET and molecular dynamics simulations studies. J Biomol Struct Dyn 2023:1-18. [PMID: 38147408 DOI: 10.1080/07391102.2023.2297005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 12/13/2023] [Indexed: 12/28/2023]
Abstract
A series of S-adenosyl-L-homosysteine (SAH) analogs, with modification in the base and sugar moiety, have been designed, synthesized and screened as nsp14 and PLpro inhibitors of severe acute respiratory syndrome corona virus (SARS-CoV-2). The outcomes of ADMET (Adsorption, Distribution, Metabolism, Excretion, and Toxicity) studies demonstrated that the physicochemical properties of all analogs were permissible for development of these SAH analogs as antiviral agents. All molecules were screened against different SARS-CoV-2 targets using molecular docking. The docking results revealed that the SAH analogs interacted well in the active site of nsp14 protein having H-bond interactions with the amino acid residues Arg289, Val290, Asn388, Arg400, Phe401 and π-alkyl interactions with Arg289, Val290 and Phe426 of Nsp14-MTase site. These analogs also formed stable H-bonds with Leu163, Asp165, Arg167, Ser246, Gln270, Tyr274 and Asp303 residues of PLpro proteins and found to be quite stable complexes therefore behaved as probable nsp14 and PLpro inhibitors. Interestingly, analog 3 showed significant in silico activity against the nsp14 N7 methyltransferase of SARS-CoV-2. The molecular dynamics (MD) and post-MD results of analog 3 unambiguously established the higher stability of the nsp14 (N7 MTase):3 complex and also indicated its behavior as probable nsp14 inhibitor like the reference sinefungin. The docking and MD simulations studies also suggested that sinefungin did act as SARS-CoV-2 PLpro inhibitor as well. This study's findings not only underscore the efficacy of the designed SAH analogs as potent inhibitors against crucial SARS-CoV-2 proteins but also pinpoint analog 3 as a particularly promising candidate. All the study provides valuable insights, paving the way for potential advancements in antiviral drug development against SARS-CoV-2.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Ritika Srivastava
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha, India
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, India
| | - Saroj Kumar Panda
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha, India
| | - Parth Sarthi Sen Gupta
- School of Biosciences and Bioengineering, D Y Patil International University, Akurdi, India
| | - Anvita Chaudhary
- Department of Applied Chemistry, Delhi Technological University, Delhi, India
| | - Farha Naaz
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, India
| | - Aditya K Yadav
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, India
| | - Nand Kumar Ram
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, India
| | - Malay Kumar Rana
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha, India
| | - Ramendra K Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, India
| | - Richa Srivastava
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, India
- Department of Applied Chemistry, Delhi Technological University, Delhi, India
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Srivastava R, Gupta SK, Naaz F, Sen Gupta PS, Yadav M, Singh VK, Panda SK, Biswal S, Rana MK, Gupta SK, Schols D, Singh RK. Exploring antiviral potency of N-1 substituted pyrimidines against HIV-1 and other DNA/RNA viruses: Design, synthesis, characterization, ADMET analysis, docking, molecular dynamics and biological activity. Comput Biol Chem 2023; 106:107910. [PMID: 37422940 DOI: 10.1016/j.compbiolchem.2023.107910] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 06/16/2023] [Accepted: 06/25/2023] [Indexed: 07/11/2023]
Abstract
A novel series of pyrimidine derivatives, bearing modified benzimidazoles at N-1 position, has been designed, synthesized and screened as NNRTIs against HIV and as broad-spectrum antiviral agents. The molecules were screened against different HIV targets using molecular docking experiment. The docking results indicated that the molecules interacted well with the residues Lys101, Tyr181, Tyr188, Trp229, Phe227 and Tyr318 present in NNIBP of HIV-RT protein, formed quite stable complexes and, thus, behaved as probable NNRTIs. Among these compounds, 2b and 4b showed anti-HIV activity with IC50 values as 6.65 µg/mL (SI = 15.50) and 15.82 µg/mL (SI = 14.26), respectively. Similarly, compound 1a showed inhibitory property against coxsackie virus B4 and compound 3b against different viruses. Molecular dynamics simulation results unequivocally demonstrated the higher stability of the complex HIV-RT:2b than the HIV-RT:nevirapine complex. The MM/PBSA-based binding free energy (-) 114.92 kJ/mol of HIV-RT:2b complex in comparison to that of HIV-RT:nevirapine complex (-) 88.33 kJ/mol, further demonstrated the higher binding strength of 2b and thus, established the potential of compound 2b as a lead molecule as an HIV-RT inhibitor.
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Affiliation(s)
- Ritika Srivastava
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad 211002, India; Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha 760010, India
| | - Sunil K Gupta
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad 211002, India
| | - Farha Naaz
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad 211002, India
| | - Parth Sarthi Sen Gupta
- School of Biosciences and Bioengineering, D Y Patil International University, Akurdi, Pune, India
| | - Madhu Yadav
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad 211002, India
| | - Vishal Kumar Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad 211002, India
| | - Saroj Kumar Panda
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha 760010, India
| | - Satyaranjan Biswal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha 760010, India
| | - Malay Kumar Rana
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha 760010, India
| | | | | | - Ramendra K Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad 211002, India.
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Yadav M, Srivastava R, Naaz F, Sen Gupta PS, Panda SK, Rana MK, Singh RK. Hydroxyalkynyl uracil derivatives as NNRTIs against HIV-1: in silico predictions, synthesis, docking and molecular dynamics simulation studies. J Biomol Struct Dyn 2023; 41:8068-8080. [PMID: 36229234 DOI: 10.1080/07391102.2022.2130980] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Accepted: 09/24/2022] [Indexed: 10/17/2022]
Abstract
To improve rationally the efficacy of the non-nucleoside human immunodeficiency virus (HIV-1) inhibitors, it is important to have a precise and detailed understanding of the HIV-1 reverse transcriptase (RT) and inhibitor interactions. For the 1-[(2-hydroxyethoxy) methyl]-6-(phenylthio) thymine (HEPT) type of nucleoside reverse transcriptase inhibitors (NNRTIs), the H-bond between the N-3H of the inhibitor and the backbone carbonyl group of K101 represents the major hydrophilic interaction. This H-bond contributes to the NNRTI binding affinity. The descriptor analyses of different uracil derivatives proved their good cell internalization. The bioactivity score reflected higher drug likeness score and the ligands showed interesting docking results. All molecules were deeply buried and stabilized into the allosteric site of HIV-1 RT. For majority of molecules, residues Lys101, Lys103, Tyr181 and Tyr188 were identified as key protein residues responsible for generation of H-bond and major interactions were similar to all known NNRTIs while very few molecules interacted with residues Phe227 and Tyr318. The TOPKAT protocol available in Discovery Studio 3.0 was used to predict the pharmacokinetics of the designed uracil derivatives in the human body. The molecular dynamics (MD) and post-MD analyses results reflected that the complex HIVRT:5 appeared to be more stable than the complex HIVRT:HEPT, where HEPT was used as reference. Different uracil derivatives have been synthesized by using uracil as starting material and commercially available propargyl bromide. The N-1 derivative of uracil was further reacted with sodamide and different aldehydes/ketones bearing alkyl and phenyl ring to obtain hydroxyalkynyl uracil derivatives as NNRTIs.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Madhu Yadav
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj, India
| | - Ritika Srivastava
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha, India
| | - Farha Naaz
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj, India
| | - Parth Sarthi Sen Gupta
- School of Biosciences and Bioengineering, D Y Patil International University, Akurdi, Pune, India
| | - Saroj Kumar Panda
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha, India
| | - Malay Kumar Rana
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha, India
| | - Ramendra K Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj, India
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Singh VK, Chaurasia H, Kumari P, Som A, Mishra R, Srivastava R, Naaz F, Singh A, Singh RK. Design, synthesis, and molecular dynamics simulation studies of quinoline derivatives as protease inhibitors against SARS-CoV-2. J Biomol Struct Dyn 2022; 40:10519-10542. [PMID: 34253149 DOI: 10.1080/07391102.2021.1946716] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A new series of quinoline derivatives has been designed and synthesized as probable protease inhibitors (PIs) against severe acute respiratory syndrome coronavirus 2. In silico studies using DS v20.1.0.19295 software have shown that these compounds behaved as PIs while interacting at the allosteric site of target Mpro enzyme (6LU7). The designed compounds have shown promising docking results, which revealed that all compounds formed hydrogen bonds with His41, His164, Glu166, Tyr54, Asp187, and showed π-interaction with His41, the highly conserved amino acids in the target protein. Toxicity Prediction by Komputer Assisted Technology results confirmed that the compounds were found to be less toxic than the reference drug. Further, molecular dynamics simulations were performed on compound 5 and remdesivir with protease enzyme. Analysis of conformational stability, residue flexibility, compactness, hydrogen bonding, solvent accessible surface area (SASA), and binding free energy revealed comparable stability of protease:5 complex to the protease: remdesivir complex. The result of hydrogen bonding showed a large number of intermolecular hydrogen bonds formed between protein residues (Glu166 and Gln189) and ligand 5, indicating strong interaction, which validated the docking result. Further, compactness analysis, SASA and interactions like hydrogen-bonding demonstrated inhibitory properties of compound 5 similar to the existing reference drug. Thus, the designed compound 5 might act as a potential inhibitor against the protease enzyme.Communicated by Ramaswamy H. SarmaHighlightsQuinoline derivatives have been designed as protease inhibitors against SARS-CoV-2.The compounds were docked at the allosteric site of SARS-CoV-2-Mpro enzyme (PDB ID: 6LU7) to study the stability of protein-ligand complex.Docking studies indicated the stable ligand-protein complexes for all designed compounds.The Toxicity Prediction by Komputer Assisted Technology protocol in DS v20.1.0.19295 software was used to evaluate the toxicity of the designed quinoline derivatives.Molecular dynamics studies indicated the formation of stable ligand-Mpro complexes.
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Affiliation(s)
- Vishal K Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj, India
| | - Himani Chaurasia
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj, India
| | - Priyanka Kumari
- Centre of Bioinformatics, University of Allahabad, Prayagraj, India
| | - Anup Som
- Centre of Bioinformatics, University of Allahabad, Prayagraj, India
| | - Richa Mishra
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj, India
| | - Ritika Srivastava
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj, India
| | - Farha Naaz
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj, India
| | - Anuradha Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj, India
| | - Ramendra K Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj, India
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Wazir SS, Srivastava R. Pentoxifylline - A Novel Adjunct in the Management of Patients with Oral Submucous Fibrosis in Terai Population of Nepal: A Prospective Case Control Study. Mymensingh Med J 2022; 31:1170-1178. [PMID: 36189568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Oral submucous fibrosis is a premalignant condition largely seen in the South-Asian countries mainly due to the consumption of areca nut. Pentoxifylline is a methylxanthine derivative, with vasodilating, anti-inflammatory and immune modulatory properties and is believed to increase the vascularity of the mucosal layer. The study was conducted to clinically assess the effectiveness of orally given pentoxifylline with dexamethasone (4mg/ml) given intralesionally and hyaluronidase 1500 IU with 0.5ml of 2.0% lignocaine plus multivitamins in the management of Oral submucous fibrosis patients pertaining to the Terai belt of Nepal. This study was conducted as an experimental study consisting of 70 oral submucous fibrosis patients who were divided blindly into two groups i.e. control or standard drug group (n=35) and experimental drug group (n=35). Standard drug group were given biweekly intralesional injections of dexamethasone (4mg/ml) and hyaluronidase 1500IU with 0.5ml of 2.0% lignocaine plus one capsule of multivitamins daily for a period of 12 weeks whereas experimental drug group were given pentoxifylline tablets 400mg 3 times daily for 12 weeks in addition to the drugs given to the standard drug group. Variables considered in the study were burning sensation, mouth opening, tongue protrusion and cheek flexibility using visual analog scale, vernier caliper, cheek retractor and a metric scale. On comparing, statistically significant results were seen in experimental drug group as far as reduction in burning sensation (p<0.001) and increase in mouth opening (p<0.001) was concerned. As far as improvement in tongue protrusion and cheek flexibility were concerned, the results were appreciating but statistically not significant (p=0.231) and (p=0.251) respectively. This study showed the effectiveness of pentoxifylline as an adjunct in the routine management of oral submucous fibrosis.
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Affiliation(s)
- S S Wazir
- Dr Sartaj Singh Wazir, Associate Professor, Department of Oral Medicine and Radiology, M B Kedia Dental College Pvt. Ltd. Birgunj, Nepal; E-mail:
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Srivastava R, Mailo J, Dunbar M. Perinatal Stroke in Fetuses, Preterm and Term Infants. Semin Pediatr Neurol 2022; 43:100988. [PMID: 36344024 DOI: 10.1016/j.spen.2022.100988] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Revised: 07/06/2022] [Accepted: 07/29/2022] [Indexed: 12/14/2022]
Abstract
Perinatal stroke is a well-defined heterogenous group of disorders involving a focal disruption of cerebral blood flow between 20 weeks gestation and 28 days of postnatal life. The most focused lifetime risk for stroke occurs during the first week after birth. The morbidity of perinatal stroke is high, as it is the most common cause of hemiparetic cerebral palsy which results in lifelong disability that becomes more apparent throughout childhood. Perinatal strokes can be classified by the timing of diagnosis (acute or retrospective), vessel involved (arterial or venous), and underlying cause (hemorrhagic or ischemic). Perinatal stroke has primarily been reported as a disorder of term infants; however, the preterm brain possesses different vulnerabilities that predispose an infant to stroke injury both in utero and after birth. Accurate diagnosis of perinatal stroke syndromes has important implications for investigations, management, and prognosis. The classification of perinatal stroke by age at presentation (fetal, preterm neonatal, term neonatal, and infancy/childhood) is summarized in this review, and includes detailed descriptions of risk factors, diagnosis, treatment, outcomes, controversies, and resources for family support.
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Affiliation(s)
- R Srivastava
- Division of Pediatric Neurology, Department of Pediatrics, University of Albertam, AB, Canada
| | - J Mailo
- Division of Pediatric Neurology, Department of Pediatrics, University of Albertam, AB, Canada
| | - M Dunbar
- Department of Pediatrics, University of Calgary, Calgary, AB, Canada; Department of Community Health Sciences, University of Calgary, AB, Canada; Alberta Children's Hospital Research Institute (ACHRI), Calgary, AB, Canada; Hotchkiss Brain Institute, Calgary, AB, Canada.
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Chadha VK, Praseeja P, Srivastava R, Shivashankar BA, Hemanth Kumar NK, Padmesha R, Suganthi P, Umadevi G, Narayana L, Magesh V, Nagendra N, Puttaswamy G, Jaiswal R, Somashekar N. Pre-treatment delay and out of pocket expenses by notified new tuberculosis patients in an Indian mega city. Indian J Tuberc 2022; 69:446-452. [PMID: 36460374 DOI: 10.1016/j.ijtb.2021.07.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 04/21/2021] [Accepted: 07/01/2021] [Indexed: 06/17/2023]
Abstract
BACKGROUND Study was carried out to find out delay from onset of symptoms and out of pocket expenditure (OOPE) until initiation of anti-TB treatment (ATT) by new Tuberculosis (TB) patients registered in public health facilities in Bengaluru. METHODS Notified patients (N = 228) selected purposively were interviewed at initiation of ATT regarding number and type of facilities visited and delay in initiating ATT. OOPE was elicited separately for in- and out-patient visits, towards consultation, purchase of medicines, diagnostic tests, transportation, hospitalization and food. Dissaving or money borrowed was ascertained. RESULTS Two-thirds of participants were 15-44 years of age and 56% were males, mean annual household income was $4357. About 75% first visited a private health facility; 68% and 87% respectively were diagnosed and started on ATT in public sector after visiting an average of three facilities and after a mean delay of 68 days; the median delay was 44 days. Of mean OOPE of $402, 54% was direct medical expenditure, 5% non-medical direct and 41% indirect. OOPE was higher for Extra-pulmonary TB compared to PTB and when number of health facilities visited before initiating treatment was >3 compared to those who visited ≤3 and when the time interval between onset of symptoms and treatment initiation (total delay) was >28 days compared to when this interval was ≤28 days. About 20% suffered catastrophic expenditure; 34% borrowed money and 37% sold assets. CONCLUSION Concerted efforts are needed to reduce delay and OOPE in pre-treatment period and social protection to account for indirect expenditure.
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Affiliation(s)
- V K Chadha
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India.
| | - P Praseeja
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India; Data Processing Center, National Statistical Office, Ministry of Statistics and Program Implementation, Bengaluru, India
| | - R Srivastava
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India
| | - B A Shivashankar
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India
| | - N K Hemanth Kumar
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India
| | - R Padmesha
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India
| | - P Suganthi
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India
| | - G Umadevi
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India
| | - Lakshmi Narayana
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India
| | - V Magesh
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India
| | - N Nagendra
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India
| | - G Puttaswamy
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India
| | - R Jaiswal
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India; National Pharmaceutical Pricing Authority, Ministry of Chemical and Fertilizers, New Delhi, India
| | - N Somashekar
- National Tuberculosis Institute, Ministry of Health and Family Welfare, Bengaluru, India
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Srivastava R, Khan J, Muzaffar S, Guroji P, Athar M. LB1034 Chromatin remodeling by warfare arsenicals in porcine skin. J Invest Dermatol 2022. [DOI: 10.1016/j.jid.2022.05.1072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Singh VK, Chaurasia H, Mishra R, Srivastava R, Yadav AK, Dwivedi J, Singh P, Singh RK. COVID-19: Pathophysiology, transmission, and drug development for therapeutic treatment and vaccination strategies. Curr Pharm Des 2022; 28:2211-2233. [PMID: 35909276 DOI: 10.2174/1381612828666220729093340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 04/04/2022] [Indexed: 11/22/2022]
Abstract
COVID-19, a dreaded and highly contagious pandemic, is flagrantly known for its rapid prevalence across the world. Till date, none of the treatments are distinctly accessible for this life-threatening disease. Under the prevailing conditions of medical emergency, one creative strategy for the identification of novel and potential antiviral agents gaining momentum in research institutions and progressively being leveraged by pharmaceutical companies is target-based drug repositioning/repurposing. A continuous monitoring and recording of results offer an anticipation that this strategy may help to reveal new medications for viral infections. This review recapitulates the neoteric illation of COVID-19, its genomic dispensation, molecular evolution via phylogenetic assessment, drug targets, the most frequently worldwide used repurposed drugs and their therapeutic applications, and a recent update on vaccine management strategies. The available data from solidarity trials exposed that the treatment with several known drugs, viz. lopinavir-ritonavir, chloroquine, hydroxychloroquine, etc had displayed various antagonistic effects along with no impactful result in diminution of mortality rate. The drugs like remdesivir, favipiravir, and ribavirin proved to be quite safer therapeutic options for treatment against COVID-19. Similarly, dexamethasone, convalescent plasma therapy and oral administration of 2DG are expected to reduce the mortality rate of COVID-19 patients.
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Affiliation(s)
- Vishal Kumar Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj- 211002, India
| | - Himani Chaurasia
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj- 211002, India
| | - Richa Mishra
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj- 211002, India
| | - Ritika Srivastava
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj- 211002, India
| | - Aditya K Yadav
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj- 211002, India
| | - Jayati Dwivedi
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj- 211002, India
| | - Prashant Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj- 211002, India
| | - Ramendra K Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj- 211002, India
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Singh VK, Chaurasia H, Mishra R, Srivastava R, Naaz F, Kumar P, Singh RK. Docking, ADMET prediction, DFT analysis, synthesis, cytotoxicity, antibacterial screening and QSAR analysis of diarylpyrimidine derivatives. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131400] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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Sigley A, Ng H, Chouhan H, Suhardja T, Srivastava R, Wagner I. Impact of a comprehensive geriatric assessment on post-operative outcomes for older adults presenting for colorectal cancer surgery: A retrospective cross-sectional cohort study. J Geriatr Oncol 2021. [DOI: 10.1016/s1879-4068(21)00428-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Yadav M, Srivastava R, Naaz F, Verma R, Singh RK. Significant role of chemistry in drug development: a systematic journey from traditional to modern approaches with anti-HIV/AIDS drugs as examples. Curr Pharm Des 2021; 28:232-247. [PMID: 34727852 DOI: 10.2174/1381612827666211102101617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 09/28/2021] [Indexed: 11/22/2022]
Abstract
BACKGROUND Traditionally, various plant extracts having interesting biological properties were the main source of new drugs. In the last 30 years, the role of chemistry in combination with new technologies, like various computational techniques in chemistry, has witnessed a major upsurge in drug discovery and targeted drug delivery. OBJECTIVE This article provides a succinct overview of recent techniques of chemistry that have a great impact on the drug development process in general and also against HIV/AIDS. It focuses on new methods employed for drug development with an emphasis on in silico studies, including identifying drug targets, especially the proteins associated with specific diseases. METHODS The rational drug development process starts with the identification of a drug target as the first phase, which helps in the computer-assisted design of new drug molecules. Synthetic chemistry has a major impact on the drug development process because it provides new molecules for future study. Natural products based semisynthesis or microwave assisted synthesis is also involved in developing newly designed drug molecules. Further, the role of analytical chemistry involves extraction, fractionation, isolation and characterization of newly synthesized molecules. RESULTS Chemistry plays a key role in drug discovery and delivery by natural process or with the help of synthetic nanoparticles or nanomedicines. So, nanochemistry is also deeply involved in the development of new drugs and their applications. CONCLUSION The previous era of drug discovery was dominated only by chemistry, but the modern approaches involve a comprehensive knowledge of synthetic chemistry, medicinal chemistry, computational chemistry and the concerned biological phenomenon.
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Affiliation(s)
- Madhu Yadav
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj - 211002. India
| | - Ritika Srivastava
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj - 211002. India
| | - Farha Naaz
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj - 211002. India
| | - Rajesh Verma
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj - 211002. India
| | - Ramendra K Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Prayagraj - 211002. India
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Abstract
COVID-19 infection, affecting every one of us from the last year. Emerging reports have indicated thromboembolism in serious cases of COVID-19. The aspirin is useful to reduce mortality of serious patients with acute respiratory distress syndrome without COVID-19. Thus, we have conducted a metanalysis to find out the role of aspirin in the mortality of COVID-19 patients using RevMan 5. A total of 10 studies containing 56 696 COVID-19 patients were found appropriate for quantitative analysis. The quality of articles was assessed using Newcastle-Ottawa scale. The fixed-effect model was used to calculate the odds ratio with 95% confidence interval (CI). The odd ratio was found to be 0.70 [0.63, 0.77] which indicates a lesser likelihood of having death in COVID-19 patients in aspirin group as compared with non-aspirin group. However, no effect 0.00 [-0.04, 0.04] was observed after the exclusion of outliers. Thus, further clinical evidence is required to make valid conclusion.
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Affiliation(s)
- Ritika Srivastava
- Department of Pharmacology and Clinical ResearchDelhi Institute of Pharmaceutical Sciences and Research (DIPSAR), Delhi Pharmaceutical Sciences and Research University (DPSRU), New Delhi, India
| | - Anoop Kumar
- Department of Pharmacology and Clinical ResearchDelhi Institute of Pharmaceutical Sciences and Research (DIPSAR), Delhi Pharmaceutical Sciences and Research University (DPSRU), New Delhi, India
- Department of PharmacologySchool of Pharmaceutical Sciences, Delhi Pharmaceutical Sciences & Research University (DPSRU), New Delhi, India
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Holden P, Wilson G, Daniel M, Srivastava R. 1251 Risk Stratification in the Management of Post-Tonsillectomy Haemorrhage. Br J Surg 2021. [DOI: 10.1093/bjs/znab259.563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
Aim
Tonsillectomy represents 17% of the elective workload in ENT and post-tonsillectomy haemorrhage is the most significant complication of this procedure. Accordingly, the GIRFT (Getting It Right First Time) report for ENT surgery focusses on the prevention of post-tonsillectomy bleeding. However, there is little guidance on the management of post-tonsillectomy haemorrhage. A local guideline for the management of post-tonsillectomy haemorrhage was introduced in 2020 based on expert consensus. This audit examines the management of patients readmitted with post-tonsillectomy haemorrhage in 2019 and compares this to the management suggested in the new guideline.
Method
Patients readmitted with post-tonsillectomy haemorrhage within 30 days of a tonsillectomy performed in 2019 were identified. These were retrospectively stratified into risk categories according to both patient and clinical factors. Management was audited against the new guideline including both the initial patient assessment and the treatment suggested for their respective risk category.
Results
Fifteen patients were identified and stratified into low, medium and high-risk categories. All patients in the “low risk” category were successfully treated conservatively. One patient from the “medium risk” category had a further bleed as an inpatient during the proposed period of observation in the new guideline and was thereafter treated as “high risk”. Within the “high risk” category two patients required return to theatre for arrest of post-tonsillectomy haemorrhage.
Conclusions
These results show that the risk stratification proposed in these guidelines may be useful in the management of post-tonsillectomy haemorrhage. Amendments to the guideline and a re-audit are in progress.
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Affiliation(s)
- P Holden
- Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom
| | - G Wilson
- Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom
| | - M Daniel
- Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom
| | - R Srivastava
- Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom
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Chan WH, Srivastava R, Damaraju N, Do H, Burnett G, MacFarlane J, Xie SM, Chen JK, Honari G, Sarin KY. Automated detection of skin reactions in epicutaneous patch testing using machine learning. Br J Dermatol 2021; 185:456-458. [PMID: 33829497 DOI: 10.1111/bjd.20141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2020] [Revised: 04/04/2021] [Accepted: 04/06/2021] [Indexed: 11/29/2022]
Affiliation(s)
- W H Chan
- Dermatology, Stanford University School of Medicine, Stanford, CA, USA.,Department of Medicine, Baylor College of Medicine, Houston, TX, USA
| | - R Srivastava
- Dermatology, Stanford University School of Medicine, Stanford, CA, USA
| | - N Damaraju
- Biomedical Informatics, Stanford University School of Medicine, Stanford, CA, USA
| | - H Do
- Dermatology, Stanford University School of Medicine, Stanford, CA, USA
| | - G Burnett
- Biomedical Informatics, Stanford University School of Medicine, Stanford, CA, USA
| | - J MacFarlane
- Biomedical Informatics, Stanford University School of Medicine, Stanford, CA, USA
| | - S M Xie
- Computer Science, Stanford University School of Medicine, Stanford, CA, USA
| | - J K Chen
- Dermatology, Stanford University School of Medicine, Stanford, CA, USA
| | - G Honari
- Dermatology, Stanford University School of Medicine, Stanford, CA, USA
| | - K Y Sarin
- Dermatology, Stanford University School of Medicine, Stanford, CA, USA
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Balaramnavar VM, Srivastava R, Varshney S, Kumar S, Rawat AK, Chandasana H, Chhonker YS, Bhatta RS, Srivastava AK, Gaikwad AN, Lakshmi V, Saxena AK. Synthesis, biological evaluation, and molecular docking study of some new rohitukine analogs as protein tyrosine phosphatase 1B inhibitors. Bioorg Chem 2021; 110:104829. [PMID: 33773222 DOI: 10.1016/j.bioorg.2021.104829] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Revised: 03/09/2021] [Accepted: 03/11/2021] [Indexed: 02/06/2023]
Abstract
Rohitukine (RH) was extracted from the stem bark of Dysoxylum binectariferum Hook. It was derivatized to different arylsulphanmides by treating with the corresponding aryl sulphonyl chlorides. These derivatives were tested in-vitro on protein tyrosine phosphatase 1B (PTP1B) inhibition. Among these the active compounds K2, K3, K5, and K8 significantly inhibited the PTP1B by 51.3%, 65.6%, 71.9%, and 55.9% respectively at 10 µg/ml, the results were also supported by in-silico docking experiments. The most potent compound K5 was analyzed for antidiabetic and antidyslipidemic activity in vivo. It showed a marked reduction in blood glucose level (random and fasting) and serum insulin level in db/db mice. It improved glucose intolerance as ascertained by the oral glucose tolerance test (OGTT). These NCEs (New Chemical Entities) also lowered cholesterol and triglyceride profiles while improved high-density lipoprotein cholesterol in db/db mice. The K5 was further evaluated for antiadipogenic activity on MDI (Methylisobutylxanthine, dexamethasone, and insulin)-induced adipogenesis. where it significantly inhibited MDI-induced adipogenesis in 3 T3-L1 preadipocytes, at 10 µM and 20 µM concentration. These results were compared with the parent compound RH which inhibited 35% and 45% lipid accumulation while the RH analog K5 inhibited the lipid accumulation by 41% and 51% at 10 and 20 µM concentration, respectively. These results well corroborated with in-silico studies.
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Affiliation(s)
- V M Balaramnavar
- Medicinal and Process Chemistry Division, CSIR-Central Drug Research Institute, Jankipuram, Extention Sector 10, Sitapur Road, Lucknow 226031, UP, India; Global Institute of Pharmaceutical Education and Research, Jaspur Road, Kashipur, Uttarakhand, India
| | - R Srivastava
- Department of Biochemistry, CSIR-Central Drug Research Institute, Jankipuram Extention, Sector 10, Sitapur Road, Lucknow 226031, UP, India
| | - S Varshney
- Department of Pharmacology, CSIR-Central Drug Research Institute, Jankipuram Extention Sector 10, Sitapur Road, Lucknow 226031, UP, India
| | - S Kumar
- Medicinal and Process Chemistry Division, CSIR-Central Drug Research Institute, Jankipuram, Extention Sector 10, Sitapur Road, Lucknow 226031, UP, India
| | - A K Rawat
- Department of Biochemistry, CSIR-Central Drug Research Institute, Jankipuram Extention, Sector 10, Sitapur Road, Lucknow 226031, UP, India
| | - H Chandasana
- Pharmacokinetics and Metabolism Division, CSIR-Central Drug Research Institute, Lucknow, India
| | - Y S Chhonker
- Pharmacokinetics and Metabolism Division, CSIR-Central Drug Research Institute, Lucknow, India
| | - R S Bhatta
- Pharmacokinetics and Metabolism Division, CSIR-Central Drug Research Institute, Lucknow, India
| | - A K Srivastava
- Department of Biochemistry, CSIR-Central Drug Research Institute, Jankipuram Extention, Sector 10, Sitapur Road, Lucknow 226031, UP, India
| | - A N Gaikwad
- Department of Pharmacology, CSIR-Central Drug Research Institute, Jankipuram Extention Sector 10, Sitapur Road, Lucknow 226031, UP, India
| | - V Lakshmi
- Department of Biochemistry, King George's Medical University, Lucknow 226003, UP, India
| | - A K Saxena
- Medicinal and Process Chemistry Division, CSIR-Central Drug Research Institute, Jankipuram, Extention Sector 10, Sitapur Road, Lucknow 226031, UP, India.
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Khadye VS, Sawant S, Shaikh K, Srivastava R, Chandrayan S, Odaneth AA. Optimal secretion of thermostable Beta-glucosidase in Bacillus subtilis by signal peptide optimization. Protein Expr Purif 2021; 182:105843. [PMID: 33631310 DOI: 10.1016/j.pep.2021.105843] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Revised: 01/29/2021] [Accepted: 02/09/2021] [Indexed: 10/22/2022]
Abstract
Commercial applications of β-glucosidase (BGL) demands its purity and availability on a large scale. In the present study, we aim to optimize the expression and secretion of a thermostable BGL from Pyrococcus furiosus (PfuBGL) in B. subtilis strain RIK1285. Initial studies with base strain BV002 harboring aprE signal peptide (aprESP) showed PfuBGL yield of 0.743 ± 0.19 pNP U/ml only. A library of 173 different homologous SPs from B. subtilis 168 genome was fused with target PfuBGL gene (PF0073) in pBE-S vector and extracellularly expressed in RIK1285 strain to identify optimal SP for PfuBGL secretion. High-throughput screening of the resulting SP library for BGL activity with a synthetic substrate followed by systematic scaling of the clones yielded a gene construct with CitHSP reporting a sixteen fold enhancement of PfuBGL secretion in comparison to base strain. Batch fermentation (7.5 L scale) PfuBGL yield of the BV003 strain with CitHSP-PF0073 fusion was observed to be 12.08 ± 0.21 pNP U/ml with specific activity of 35.52 ± 0.53 U/mg. Thus, the study represents report on the secretory expression of thermostable PfuBGL using B. subtilis as a host organism and demonstrating its high potential for industrial production of any protein/enzyme.
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Affiliation(s)
- Vishwanath S Khadye
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology (formerly UDCT), Nathalal Parekh Marg, Matunga, Mumbai, 400019, India.
| | - Sneha Sawant
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology (formerly UDCT), Nathalal Parekh Marg, Matunga, Mumbai, 400019, India.
| | - Kurshedaktar Shaikh
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology (formerly UDCT), Nathalal Parekh Marg, Matunga, Mumbai, 400019, India.
| | - Ritika Srivastava
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology (formerly UDCT), Nathalal Parekh Marg, Matunga, Mumbai, 400019, India.
| | - Sanjeev Chandrayan
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology (formerly UDCT), Nathalal Parekh Marg, Matunga, Mumbai, 400019, India.
| | - Annamma A Odaneth
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology (formerly UDCT), Nathalal Parekh Marg, Matunga, Mumbai, 400019, India.
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19
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Srivastava R, Gupta SK, Naaz F, Sen Gupta PS, Yadav M, Singh VK, Singh A, Rana MK, Gupta SK, Schols D, Singh RK. Alkylated benzimidazoles: Design, synthesis, docking, DFT analysis, ADMET property, molecular dynamics and activity against HIV and YFV. Comput Biol Chem 2020; 89:107400. [PMID: 33068917 PMCID: PMC7537607 DOI: 10.1016/j.compbiolchem.2020.107400] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Revised: 09/22/2020] [Accepted: 10/02/2020] [Indexed: 12/12/2022]
Abstract
New benzimidazole analogs synthesized as antivirals against HIV-1 and yellow fever virus. Molecular dynamics simulation studies indicated a stable ligand-protein complex of compound 3a within NNIBP of HIV-RT. DFT analysis confirmed the stability of hydrogen bonding interaction between the TRP 229 residue of HIV-RT and compound 3a. Molecules were tested for their anti-HIV and broad spectrum antiviral properties against different DNA and RNA viruses. Antiviral properties and cytotoxicity determined using MTT assay. Compound 3a showed anti-HIV activity and compound 2b showed excellent inhibition property against yellow fever virus.
A series of alkylated benzimidazole derivatives was synthesized and screened for their anti-HIV, anti-YFV, and broad-spectrum antiviral properties. The physicochemical parameters and drug-like properties of the compounds were assessed first, and then docking studies and MD simulations on HIV-RT allosteric sites were conducted to find the possible mode of their action. DFT analysis was also performed to confirm the nature of the hydrogen bonding interaction of active compounds. The in silico studies indicated that the molecules behaved like possible NNRTIs. The nature – polar or non-polar and position of the substituent present at fifth, sixth, and N-1 positions of the benzimidazole moiety played an important role in determining the antiviral properties of the compounds. Among the various compounds, 2-(5,6-dibromo-2-chloro-1H-benzimidazol-1-yl)ethan-1-ol (3a) showed anti-HIV activity with an appreciably low IC50 value as 0.386 × 10−5μM. Similarly, compound 2b, 3-(2-chloro-5-nitro-1H-benzimidazol-1-yl) propan-1-ol, showed excellent inhibitory property against the yellow fever virus (YFV) with EC50 value as 0.7824 × 10−2μM.
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Affiliation(s)
- Ritika Srivastava
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India
| | - Sunil K Gupta
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India
| | - Farha Naaz
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India
| | - Parth Sarthi Sen Gupta
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha 760010, India
| | - Madhu Yadav
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India
| | - Vishal Kumar Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India
| | - Anuradha Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India
| | - Malay Kumar Rana
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha 760010, India
| | | | | | - Ramendra K Singh
- Bioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India.
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Poojari R, Mohanty B, Kadwad V, Suryawanshi D, Chaudhari P, Khade B, Srivastava R, Gupta S, Panda D. A comprehensive analysis of cetuximab combinatorial polymeric nanocomplexes with potent radionuclide uptake to combat metastatic liver cancer. Eur J Cancer 2020. [DOI: 10.1016/s0959-8049(20)31173-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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21
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Nichols L, Knighton A, Brunisholz K, Elbel R, Smith G, Choberka A, Belnap T, Allen T, Moore M, Srivastava R. Adapting a Complex, Integrated Health and Social Services Intervention in Two Communities. Health Serv Res 2020. [DOI: 10.1111/1475-6773.13489] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Affiliation(s)
- L. Nichols
- Intermountain Healthcare Salt Lake City UT United States
| | - A. Knighton
- Intermountain Healthcare Murray UT United States
| | | | - R. Elbel
- SelectHealth Murray UT United States
| | - G. Smith
- Intermountain Healthcare Salt Lake City UT United States
| | - A. Choberka
- Intermountain Healthcare Ogden UT United States
| | - T. Belnap
- Intermountain Healthcare Murray UT United States
| | - T. Allen
- Intermountain Healthcare Salt Lake City UT United States
| | - M. Moore
- Intermountain Healthcare Salt Lake City UT United States
| | - R. Srivastava
- Intermountain Healthcare Salt Lake City UT United States
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Rawat SS, Kumar A, Srivastava R, Suman CK. Efficiency Enhancement in Organic Solar Cells by Use of Cobalt Phthalocyanine (CoPc) Thin Films. J Nanosci Nanotechnol 2020; 20:3703-3709. [PMID: 31748067 DOI: 10.1166/jnn.2020.17517] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Cobalt phthalocyanine (CoPc) nano thin films have been introduced as a hole buffer layer in organic solar cells with active layer of Poly(3-hexylthiophene) (P3HT) and [6,6]-phenyl-C61-butyric acid methyl ester (PCBM). The surface morphology and opto-electrical properties of the CoPc thin films have made it an applicable materials for organic solar cells. The nano-thin films of CoPc are continuously distributed over the studied area and the roughness are around 5 to 7 nm for all thickness. The dominant optical absorptions are in the visible range of wavelengths 500 to 800 nm. The CoPc buffer layer is suitable for energy level matching in energy level diagram and enhances the absorption spectrum as well, which facilitate the charge carrier generation, increases charge transport, decreases charge recombination, hence enhance the all device parameters short circuit current density (Jsc), open circuit voltage (Voc) and fill factor (FF). The solar cells efficiency increases by ˜70% and the fill factor increases by ˜45% in comparison to the standard cells. The increase in efficiency and the fill factors of the solar cells may also be attributed to the increasing of shunt and lowering the series resistance of the cells. The cole-cole plots of the devices may be modeled in electrical circuit as a single parallel resistance Rb and capacitance Cb network with a series resistance Rc.
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Affiliation(s)
- S S Rawat
- Council of Scientific and Industrial Research-National Physical Laboratory, Dr. K. S. Krishnan Road, New Delhi 110012, India
| | - Ashish Kumar
- Council of Scientific and Industrial Research-National Physical Laboratory, Dr. K. S. Krishnan Road, New Delhi 110012, India
| | - R Srivastava
- Council of Scientific and Industrial Research-National Physical Laboratory, Dr. K. S. Krishnan Road, New Delhi 110012, India
| | - C K Suman
- Council of Scientific and Industrial Research-National Physical Laboratory, Dr. K. S. Krishnan Road, New Delhi 110012, India
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Singh VK, Srivastava R, Gupta PSS, Naaz F, Chaurasia H, Mishra R, Rana MK, Singh RK. Anti-HIV potential of diarylpyrimidine derivatives as non-nucleoside reverse transcriptase inhibitors: design, synthesis, docking, TOPKAT analysis and molecular dynamics simulations. J Biomol Struct Dyn 2020; 39:2430-2446. [DOI: 10.1080/07391102.2020.1748111] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Vishal K. Singh
- Department of Chemistry, Bioorganic Research Laboratory, University of Allahabad, Prayagraj, India
| | - Ritika Srivastava
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha, India
| | - Parth Sarthi Sen Gupta
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha, India
| | - Farha Naaz
- Department of Chemistry, Bioorganic Research Laboratory, University of Allahabad, Prayagraj, India
| | - Himani Chaurasia
- Department of Chemistry, Bioorganic Research Laboratory, University of Allahabad, Prayagraj, India
| | - Richa Mishra
- Department of Chemistry, Bioorganic Research Laboratory, University of Allahabad, Prayagraj, India
| | - Malay Kumar Rana
- Department of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha, India
| | - Ramendra K. Singh
- Department of Chemistry, Bioorganic Research Laboratory, University of Allahabad, Prayagraj, India
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24
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Rawat SS, Rana A, Swami SK, Srivastava R, Suman CK. Investigation of negative magneto-conductance properties of cobalt phthalocyanine thin films. SN Appl Sci 2020. [DOI: 10.1007/s42452-020-2405-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
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25
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Sonika U, Sahu B, Dahale AS, Srivastava R, Saran RK, Sachdeva S. Gastrointestinal: Radiation proctitis: Or is it something else? J Gastroenterol Hepatol 2019; 34:1131. [PMID: 30693563 DOI: 10.1111/jgh.14592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Revised: 11/16/2018] [Accepted: 12/28/2018] [Indexed: 12/09/2022]
Affiliation(s)
- U Sonika
- Department of Gastroenterology, GB Pant Institute of Post Graduate Medical Education and Research, New Delhi, India
| | - B Sahu
- Department of Gastroenterology, GB Pant Institute of Post Graduate Medical Education and Research, New Delhi, India
| | - A S Dahale
- Department of Gastroenterology, GB Pant Institute of Post Graduate Medical Education and Research, New Delhi, India
| | - R Srivastava
- Department of Pathology, GB Pant Institute of Post Graduate Medical Education and Research, New Delhi, India
| | - R K Saran
- Department of Pathology, GB Pant Institute of Post Graduate Medical Education and Research, New Delhi, India
| | - S Sachdeva
- Department of Gastroenterology, GB Pant Institute of Post Graduate Medical Education and Research, New Delhi, India
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Ramarajan N, Srivastava R, Begum F, Gupta S, Pramesh C, Badwe R. Abstract P3-16-01: Responding at patient's time of need: Scaling rapid access to evidence-based treatment plans. Cancer Res 2019. [DOI: 10.1158/1538-7445.sabcs18-p3-16-01] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Background: Cancer patients worldwide feel intense anxiety, often racing to start treatments at non expert centers. Further, imbalanced oncologist to patient ratios (˜1600: 1.8 M in India, ˜23,000: 15M in USA), impedes access to expertise. We study the impact of rapid evidence based expert treatment plans in relieving patient anxiety. Navya, a health services technology, generates personalized treatment plans that maps within NCCN Resource Stratified Guidelines [SABCS 2017]. This is vetted on mobile by oncologists at tertiary centers like TMC NCG to provide expert opinion reports to patients. Since 2015, ˜19,457 patients from 57 countries have reached out for an online opinion. On the ground, 78% of patients received evidence based treatments recommended by Navya [ASCO 2017].
Methods: To assess impact of timeliness, a prospective series of patients (from Sep '17 to April '18) were asked: “Were you relieved to receive expert opinion report in [x] days?” “Does it matter to you to receive expert opinion report in 1 day?” To assess time savings, preliminary reports with treatment options from NCCN and TMC NCG guidelines were shared with patients who matched all guidelines criteria. Subsequently, expert opinion reports were shared as usual.
Results: 543/701 patients responded to phone follow-up. 97% [± 3.2] were relieved to receive expert opinion reports in 1-2 days (103/106) vs 83% [± 3.8 ] for 3+ days (365/437). Of those not relieved by 3+ day turnaround, 83% stated that it would matter to receive expert opinion reports in 1 day (60/72). The first 300 preliminary reports shared in median time of 3.37 hours, resulted in 90% time savings vs expert opinion reports. On 10% of the preliminary reports, experts added information such as de-/escalating therapy (18/31), and additional diagnostic tests (6/31).
Conclusions: Navya relieves patient anxieties by responding at the time of need with evidence based treatment plans. Scaling such health services technologies to patients worldwide is feasible.
Citation Format: Ramarajan N, Srivastava R, Begum F, Gupta S, Pramesh C, Badwe R. Responding at patient's time of need: Scaling rapid access to evidence-based treatment plans [abstract]. In: Proceedings of the 2018 San Antonio Breast Cancer Symposium; 2018 Dec 4-8; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2019;79(4 Suppl):Abstract nr P3-16-01.
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Affiliation(s)
- N Ramarajan
- Navya Network, Cambridge, MA; Breast Disease Management Group, Tata Memorial Centre, Mumbai, India; Tata Memorial Centre, Mumbai, India
| | - R Srivastava
- Navya Network, Cambridge, MA; Breast Disease Management Group, Tata Memorial Centre, Mumbai, India; Tata Memorial Centre, Mumbai, India
| | - F Begum
- Navya Network, Cambridge, MA; Breast Disease Management Group, Tata Memorial Centre, Mumbai, India; Tata Memorial Centre, Mumbai, India
| | - S Gupta
- Navya Network, Cambridge, MA; Breast Disease Management Group, Tata Memorial Centre, Mumbai, India; Tata Memorial Centre, Mumbai, India
| | - C Pramesh
- Navya Network, Cambridge, MA; Breast Disease Management Group, Tata Memorial Centre, Mumbai, India; Tata Memorial Centre, Mumbai, India
| | - R Badwe
- Navya Network, Cambridge, MA; Breast Disease Management Group, Tata Memorial Centre, Mumbai, India; Tata Memorial Centre, Mumbai, India
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Round WH, Ng KH, Rodriguez L, Thayalan K, Tang F, Srivastava R, Fukuda S, Krisanachinda A, Deng X, Han Y. AFOMP policy number 6: code of ethics for medical physicists in AFOMP Countries. Australas Phys Eng Sci Med 2018; 41:809-810. [PMID: 30406922 DOI: 10.1007/s13246-018-0708-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 10/31/2018] [Indexed: 10/27/2022]
Abstract
This policy statement, which is the sixth of a series of documents prepared by the Asia-Oceania Federation of Organizations for Medical Physics (AFOMP) Professional Development Committee, gives guidance on how medical physicists in AFOMP countries should conduct themselves in an ethical manner in their professional practice (Ng et al. in Australas Phys Eng Sci Med 32:175-179, 2009; Round et al. in Australas Phys Eng Sci Med 33:7-10, 2010; Round et al. in Australas Phys Eng Sci Med 34:303-307, 2011; Round et al. in Australas Phys Eng Sci Med 35:393-398, 2012; Round et al. in Australas Phys Eng Sci Med 38:217-221, 2015). It was developed after the ethics policies and codes of conducts of several medical physics societies and other professional organisations were studied. The policy was adopted at the Annual General Meeting of AFOMP held in Jaipur, India, in November 2017.
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Affiliation(s)
- W H Round
- , 100 Te Awa Road, R D 3, 3283, Hamilton, New Zealand.
| | - K H Ng
- Department of Biomedical Imaging, University of Malaya, Kuala Lumpur, Malaysia
| | - L Rodriguez
- Jose R. Reyes Memorial Medical Center, Manila, Philippines
| | - K Thayalan
- Medical Physics Division, Dr Kamashi Memorial Hospital, Chennai, India
| | - F Tang
- Department of Clinical Oncology, Queen Mary Hospital, Hong Kong, Hong Kong
| | - R Srivastava
- Department of Radiation Oncology, Ghent University Hospital, C. Heymanslaan 10, Radiotherapiepark, 9000, Ghent, Belgium
| | - S Fukuda
- Radiation Quality Control Section, Clinical Research Cluster, National Institute of Radiological Sciences (NIRS), National Institutes for Quantum and Radiological Science and Technology (QST), Chiba, Japan
| | - A Krisanachinda
- Department of Radiology, Chulalongkorn University, Bangkok, Thailand
| | - X Deng
- Department of Radiation Oncology, Sun Yat-sen University Cancer Center, Guangzhou, People's Republic of China
| | - Y Han
- Department of Radiation Oncology, Samsung Medical Center, Sungkyunkwan University, Seoul, Republic of Korea
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Lavanya SN, Udayashankar AC, Raj SN, Mohan CD, Gupta VK, Tarasatyavati C, Srivastava R, Nayaka SC. Lipopolysaccharide-induced priming enhances NO-mediated activation of defense responses in pearl millet challenged with Sclerospora graminicola. 3 Biotech 2018; 8:475. [PMID: 30456009 PMCID: PMC6226417 DOI: 10.1007/s13205-018-1501-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Accepted: 11/01/2018] [Indexed: 01/13/2023] Open
Abstract
Lipopolysaccharide (LPS) elicitors isolated from Pseudomonas fluorescens UOM SAR 14 effectively induced systemic and durable resistance against pearl millet downy mildew disease caused by the oomycete Sclerospora graminicola. Rapid and increased callose deposition and H2O2 accumulation were evidenced in downy mildew susceptible seeds pre-treated with LPS (SLPS) in comparison with the control seedlings, which also correlated with expression of various other defense responses. Biochemical analysis of enzymes and quantitative real-time polymerase chain reaction data suggested that LPS protects pearl millet against downy mildew through the activation of plant defense mechanisms such as generation of nitric oxide (NO), increased expression, and activities of defense enzymes and proteins. Elevation of NO concentrations was shown to be essential for LPS-mediated defense manifestation in pearl millet and had an impact on the other downstream defense responses like enhanced activation of enzymes and pathogen-related (PR) proteins. Temporal expression analysis of defense enzymes and PR-proteins in SLPS seedlings challenged with the downy mildew pathogen revealed that the activity and expression of peroxidase, phenylalanine ammonia lyase, and the PR-proteins (PR-1 and PR-5) were significantly enhanced compared to untreated control. Higher gene expression and protein activities of hydroxyproline-rich glycoproteins (HRGPs) were observed in SLPS seedlings which were similar to that of the resistant check. Collectively, our results suggest that, in pearl millet-downy mildew interaction, LPS pre-treatment affects defense signaling through the central regulator NO which triggers the activities of PAL, POX, PR-1, PR-5, and HRGPs.
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Affiliation(s)
- S. N. Lavanya
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysore, 570006 India
| | - A. C. Udayashankar
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysore, 570006 India
| | - S. Niranjan Raj
- Department of Studies in Microbiology, Karnataka State Open University, Mukthagangotri, Mysore, 570006 India
| | | | - V. K. Gupta
- ERA Chair of Green Chemistry, Department of Chemistry and Biotechnology, School of Science, Tallinn University of Technology, Tallinn, Estonia
| | - C. Tarasatyavati
- All India Coordinated Research Project on Pearl Millet, Indian Council of Agricultural Research, Mandor, Jodhpur, Rajasthan 342304 India
| | - R. Srivastava
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Telangana 502324 India
| | - S. Chandra Nayaka
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysore, 570006 India
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Tan C, Yeo Chen Long D, Cao T, Tan Wei Ding V, Srivastava R, Yow A, Tan W, Wong Wing Kee D, Xu C, Tey H. Drug-free microneedles in the treatment of keloids: a single-blinded intraindividual controlled clinical trial. Br J Dermatol 2018; 179:1418-1419. [DOI: 10.1111/bjd.17078] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- C. Tan
- National Skin Centre; 1 Mandalay Rd Singapore 308205
| | - D. Yeo Chen Long
- School of Chemical and Biomedical Engineering; Nanyang Technological University; 62 Nanyang Drive Singapore 637459
| | - T. Cao
- National Skin Centre; 1 Mandalay Rd Singapore 308205
| | | | - R. Srivastava
- Institute of Infocomm, Agency of Science and Technology; Singapore
| | - A.P. Yow
- Institute of Infocomm, Agency of Science and Technology; Singapore
| | - W.P. Tan
- National Skin Centre; 1 Mandalay Rd Singapore 308205
| | - D. Wong Wing Kee
- Institute of Infocomm, Agency of Science and Technology; Singapore
| | - C. Xu
- School of Chemical and Biomedical Engineering; Nanyang Technological University; 62 Nanyang Drive Singapore 637459
- NTU-Northwestern Institute for Nanomedicine; Nanyang Technological University; 50 Nanyang Avenue Singapore 639798
| | - H.L. Tey
- National Skin Centre; 1 Mandalay Rd Singapore 308205
- Lee Kong Chian School of Medicine; Nanyang Technological University; Singapore
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Srivastava R, Gupta SK, Naaz F, Singh A, Singh VK, Verma R, Singh N, Singh RK. Synthesis, antibacterial activity, synergistic effect, cytotoxicity, docking and molecular dynamics of benzimidazole analogues. Comput Biol Chem 2018; 76:1-16. [DOI: 10.1016/j.compbiolchem.2018.05.021] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2018] [Revised: 05/18/2018] [Accepted: 05/24/2018] [Indexed: 11/25/2022]
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Naaz F, Srivastava R, Singh A, Singh N, Verma R, Singh VK, Singh RK. Molecular modeling, synthesis, antibacterial and cytotoxicity evaluation of sulfonamide derivatives of benzimidazole, indazole, benzothiazole and thiazole. Bioorg Med Chem 2018; 26:3414-3428. [DOI: 10.1016/j.bmc.2018.05.015] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Revised: 05/01/2018] [Accepted: 05/10/2018] [Indexed: 11/27/2022]
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33
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Wilson M, Kore R, Ritchie A, Fraser R, Beaumont S, Srivastava R, Badyal J. Palladium–poly(ionic liquid) membranes for permselective sonochemical flow catalysis. Colloids Surf A Physicochem Eng Asp 2018. [DOI: 10.1016/j.colsurfa.2018.02.044] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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34
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Ranawat R, Srivastava R. Risk of cardiovascular diseases and gastrointestinal tract disorders in relation to the impact of shift work among male workers of textile mills in Pali district of Rajasthan, India. ACTA ACUST UNITED AC 2017. [DOI: 10.31018/jans.v9i3.1362] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
he present study was conducted in textile mill of Pali city with the objective to study the risk of cardiac and gastric problems in relation to shift work among male workers. The results showed significant difference between Body Mass Index (χ2=14.2, p=0.0008) and waist hip ratio (χ2=5.2, p=0.0226) of shift and non shift workers. Results on food intake showed comparatively more deficient daily intake of nutrients like fiber (7.21 g), β carotene (1842.89 μg), and folic acid (99.03 μg) in shift workers with respect to recommended dietary allowances and an overconsumption of fats (37.72 g). Alcoholism (χ2=17.3, p=0.0001) and smoking habit (χ2=14, p=0.0029) was found to be significantly higher among shift workers. Comparatively higher segment of shift workers suffered from hypertension (56.0%), disturbed appetite (87.50%), stomach upsets (90.0%), nausea (88.50%), heartburn (85.0%) and breathlessness (34.0%). Shift workers also had higher mean levels of lipid profile fractions and relatively more subjects fell into the category of high risk (20.50%) of CVD. Longer duration of involvement in shift work also influenced the occurrence of gastric and cardiac problems like disturbed appetite (χ2=9.96, p=0.0411), stomach upsets (χ2=9.73, p=0.0452), stomach ache (χ2=10.1, p=0.0389), constipation (χ2=9.88, p=0.0424), dizziness (47.37%), breathlessness (50.0%) and swollen feet (44.74%). The study concludes that shift work affects food intake, BMI, WHR, BP, alcohol intake, smoking habits and lipid profile of the subjects, thus increasing the risk of health problems like cardiovascular and gastric diseases.
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Lalwani R, Srivastava R, Athavale S, Kotgirwar S. Anterior cruciate ligament: Morphology and morphometry of its footprints and fibre bundles. J ANAT SOC INDIA 2017. [DOI: 10.1016/j.jasi.2017.08.166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Arunkumar P, Indulekha S, Vijayalakshmi S, Srivastava R. In vitro comparative studies of Zein nanoparticles and composite Chitosan thermogels based injectable formulation of Doxorubicin. J Drug Deliv Sci Technol 2017. [DOI: 10.1016/j.jddst.2017.05.015] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Srivastava R, Bousquières J, Cepeda-Vázquez M, Roux S, Bonazzi C, Rega B. Kinetic study of furan and furfural generation during baking of cake models. Food Chem 2017; 267:329-336. [PMID: 29934175 DOI: 10.1016/j.foodchem.2017.06.126] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Revised: 05/25/2017] [Accepted: 06/20/2017] [Indexed: 01/20/2023]
Abstract
This study describes the kinetics of furan and furfural generation in a cake model, for the first time. These process-induced compounds impact safety and sensory aspects of baked products. Understanding their generation with regards to process dynamics will serve food quality design. However, the complexity of real products makes this task challenging. This work provides a novel approach to understand and model chemical reactivity by implementing an inert cake model (starch, water and cellulose), specifically designed for mimicking a sponge cake structure. The addition of reaction precursors (glucose and leucine) to follow Maillard and caramelization reactions, resulted in browning and generated considerable levels of furanic compounds (up to 17.61ng/g for furan and 38.99μg/g for furfural, dry basis). Multiresponse data modeling resulted in a kinetic model which adequately describes experimental concentrations and makes it possible to estimate the degradation of precursors and the behavior of two hypothetic intermediates.
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Affiliation(s)
- R Srivastava
- UMR Ingénierie Procédés Aliments, AgroParisTech, Inra, Université Paris-Saclay, 91300 Massy, France
| | - J Bousquières
- UMR Ingénierie Procédés Aliments, AgroParisTech, Inra, Université Paris-Saclay, 91300 Massy, France
| | - M Cepeda-Vázquez
- UMR Ingénierie Procédés Aliments, AgroParisTech, Inra, Université Paris-Saclay, 91300 Massy, France
| | - S Roux
- UMR Ingénierie Procédés Aliments, AgroParisTech, Inra, Université Paris-Saclay, 91300 Massy, France
| | - C Bonazzi
- UMR Ingénierie Procédés Aliments, AgroParisTech, Inra, Université Paris-Saclay, 91300 Massy, France
| | - B Rega
- UMR Ingénierie Procédés Aliments, AgroParisTech, Inra, Université Paris-Saclay, 91300 Massy, France.
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Srivastava R, Kommu A, Sinha N, Singh JK. Removal of arsenic ions using hexagonal boron nitride and graphene nanosheets: a molecular dynamics study. Molecular Simulation 2017. [DOI: 10.1080/08927022.2017.1321754] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- R. Srivastava
- Department of Chemical Engineering, Indian Institute of Technology Kanpur, Kanpur, India
| | - A. Kommu
- Department of Chemical Engineering, Indian Institute of Technology Kanpur, Kanpur, India
| | - N. Sinha
- Department of Mechnical Engineering, Indian Institute of Technology Kanpur, Kanpur, India
| | - J. K. Singh
- Department of Chemical Engineering, Indian Institute of Technology Kanpur, Kanpur, India
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Agrawal S, Srivastava R, Rahmatpanah F, Madiraju C, BenMohamed L, Agrawal A. Airway epithelial cells enhance the immunogenicity of human myeloid dendritic cells under steady state. Clin Exp Immunol 2017; 189:279-289. [PMID: 28470729 DOI: 10.1111/cei.12983] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/25/2017] [Indexed: 12/16/2022] Open
Abstract
Dendritic cells (DCs) and airway epithelial cells (AECs) are in close proximity, and AECs secrete factors such as retinoic acid which induce tolerance in DCs at homeostasis. However, the question remains as to how DCs in the lung are able to respond to pathogens in the immunosuppressive environment. Using an in vitro human myeloid DC (mDC)-AEC co-culture system, we demonstrate that AECs induced several gene changes in the mDCs cultured with AECs compared to the mDCs not cultured with AECs. Analysis revealed that several chemokine genes were altered. These chemokine genes could serve to attract neutrophils, natural killer (NK) T as well as T helper type 1 (Th1)/Th2 cells to the airways. Genes priming lipid and major histocompatibility complex (MHC) class II antigen presentation were also up-regulated, along with certain anti-microbial protein genes. In addition, the expression and function of pathogen-sensing Toll-like receptors (TLRs) as well as Nod-like receptors (NLRs) and their downstream signalling molecules were up-regulated in mDCs cultured with AECs. Moreover, murine mucosal DCs from the lung expressed significantly higher levels of TLRs and NLRs compared to peripheral DCs from the spleen. These results indicate that AECs prime mDCs to enhance their immunogenicity, which could be one of the mechanisms that compensates for the immunosuppressive mucosal environment.
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Affiliation(s)
- S Agrawal
- Division of Basic and Clinical Immunology, Department of Medicine, Irvine, CA, USA
| | - R Srivastava
- Laboratory of Cellular and Molecular Immunology, Gavin Herbert Eye Institute, Irvine, CA, USA
| | - F Rahmatpanah
- Department of pathology, University of California, Irvine, Irvine, CA, USA
| | - C Madiraju
- Division of Basic and Clinical Immunology, Department of Medicine, Irvine, CA, USA
| | - L BenMohamed
- Laboratory of Cellular and Molecular Immunology, Gavin Herbert Eye Institute, Irvine, CA, USA
| | - A Agrawal
- Division of Basic and Clinical Immunology, Department of Medicine, Irvine, CA, USA
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Wilson M, Kore R, Fraser R, Beaumont S, Srivastava R, Badyal J. Recyclable palladium catalyst cloths for carbon-carbon coupling reactions. Colloids Surf A Physicochem Eng Asp 2017. [DOI: 10.1016/j.colsurfa.2017.01.050] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Indulekha S, Arunkumar P, Bahadur D, Srivastava R. Dual responsive magnetic composite nanogels for thermo-chemotherapy. Colloids Surf B Biointerfaces 2017; 155:304-313. [PMID: 28448900 DOI: 10.1016/j.colsurfb.2017.04.035] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Revised: 04/13/2017] [Accepted: 04/17/2017] [Indexed: 01/01/2023]
Abstract
With the onset of hyperthermia and their advantage in increasing vascular perfusion and permeability in the cancer milieu, thermo-responsive polymers have become an attractive candidate for designing therapeutic nano-vehicles for targeted on-demand delivery of bioactive agents. For this purpose, we developed a dual (thermo- and pH-) responsive nanotherapeutic composite system rendering a combinational therapy of hyperthermia mediated drug delivery. This composite system comprises of magnetic chitosan-g-PNVCL (MCP) polymeric nanogels loaded with anticancer drug, Doxorubicin (DOX). The size distribution and the stability of the MCP nanogels have been characterized using DLS and Zeta-potential studies. XRD and TG-DTA confirms the presence of magnetic nanoparticles loaded onto MCP nanogel. ICP-AES analysis was done to determine the amount of iron content in the MCP nanogels. The magnetic property of the MCP nanogels was estimated to be ∼37 emu/g using Vibrating Sample Magnetometer (VSM). The heating ability of MCP nanogels was calculated to be ∼204W/g for the concentration of 2mg/mL using time-dependent Specific Absorption Rate (SAR) method. Magnetic field induced thermo-responsive and pH responsive drug release studies were carried out and it was found that MCP nanogels have a good on-demand drug release properties. The DOX-MCP nanogels were evaluated for its in vitro killing efficacy of breast cancer cells MCF 7 and MDAMB 231 cells with synergistic effects of both hyperthermia and chemotherapy in presence of magnetic field at the concentration of 2mg/mL. Thus, MCP nanogels can be a potential dual modal on-demand hyperthermia mediated drug delivery platform for the breast cancer treatment.
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Affiliation(s)
- S Indulekha
- Department of Biosciences & Bioengineering, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - P Arunkumar
- Centre for Research in Nanotechnology and Science, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - D Bahadur
- Department of Metallurgical Engineering and Materials Science, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - R Srivastava
- Department of Biosciences & Bioengineering, Indian Institute of Technology Bombay, Mumbai 400076, India.
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Gollapalli K, Ghantasala S, Kumar S, Srivastava R, Rapole S, Sridhar E, Srivastava S, Moiyadi A. P08.43 Understanding the aggressive nature of glioblastoma tumors associated with the subventricular zone. Neuro Oncol 2017. [DOI: 10.1093/neuonc/nox036.232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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44
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Garg R, Srivastava R, Brahma V, Verma L, Karthikeyan S, Sahni G. Biochemical and structural characterization of a novel halotolerant cellulase from soil metagenome. Sci Rep 2016; 6:39634. [PMID: 28008971 PMCID: PMC5180356 DOI: 10.1038/srep39634] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Accepted: 11/25/2016] [Indexed: 12/20/2022] Open
Abstract
Cellulase catalyzes the hydrolysis of β-1,4-linkages of cellulose to produce industrially relevant monomeric subunits. Cellulases find their applications in pulp and paper, laundry, food and feed, textile, brewing industry and in biofuel production. These industries always have great demand for cellulases that can work efficiently even in harsh conditions such as high salt, heat, and acidic environments. While, cellulases with high thermal and acidic stability are already in use, existence of a high halotolerant cellulase is still elusive. Here, we report a novel cellulase Cel5R, obtained from soil metagenome that shows high halotolerance and thermal stability. The biochemical and functional characterization of Cel5R revealed its endoglucanase activity and high halostability. In addition, the crystal structure of Cel5R determined at 2.2 Å resolution reveals a large number of acidic residues on the surface of the protein that contribute to the halophilic nature of this enzyme. Moreover, we demonstrate that the four free and non-conserved cysteine residues (C65, C90, C231 and C273) contributes to the thermal stability of Cel5R by alanine scanning experiments. Thus, the newly identified endoglucanase Cel5R is a promising candidate for various industrial applications.
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Affiliation(s)
- Roma Garg
- CSIR-Institute Of Microbial Technology, Council Of Scientific and Industrial Research (CSIR), Sector 39 A, Chandigarh 160036, India
| | - Ritika Srivastava
- CSIR-Institute Of Microbial Technology, Council Of Scientific and Industrial Research (CSIR), Sector 39 A, Chandigarh 160036, India
| | - Vijaya Brahma
- CSIR-Institute Of Microbial Technology, Council Of Scientific and Industrial Research (CSIR), Sector 39 A, Chandigarh 160036, India
| | - Lata Verma
- CSIR-Institute Of Microbial Technology, Council Of Scientific and Industrial Research (CSIR), Sector 39 A, Chandigarh 160036, India
| | - Subramanian Karthikeyan
- CSIR-Institute Of Microbial Technology, Council Of Scientific and Industrial Research (CSIR), Sector 39 A, Chandigarh 160036, India
| | - Girish Sahni
- CSIR-Institute Of Microbial Technology, Council Of Scientific and Industrial Research (CSIR), Sector 39 A, Chandigarh 160036, India
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Kaur A, Gautam R, Srivastava R, Chandel A, Kumar A, Karthikeyan S, Bachhawat AK. ChaC2, an Enzyme for Slow Turnover of Cytosolic Glutathione. J Biol Chem 2016; 292:638-651. [PMID: 27913623 DOI: 10.1074/jbc.m116.727479] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2016] [Revised: 11/30/2016] [Indexed: 11/06/2022] Open
Abstract
Glutathione degradation plays an important role in glutathione and redox homeostasis, and thus it is imperative to understand the enzymes and the mechanisms involved in glutathione degradation in detail. We describe here ChaC2, a member of the ChaC family of γ-glutamylcyclotransferases, as an enzyme that degrades glutathione in the cytosol of mammalian cells. ChaC2 is distinct from the previously described ChaC1, to which ChaC2 shows ∼50% sequence identity. Human and mouse ChaC2 proteins purified in vitro show 10-20-fold lower catalytic efficiency than ChaC1, although they showed comparable Km values (Km of 3.7 ± 0.4 mm and kcat of 15.9 ± 1.0 min-1 toward glutathione for human ChaC2; Km of 2.2 ± 0.4 mm and kcat of 225.2 ± 15 min-1 toward glutathione for human ChaC1). The ChaC1 and ChaC2 proteins also shared the same specificity for reduced glutathione, with no activity against either γ-glutamyl amino acids or oxidized glutathione. The ChaC2 proteins were found to be expressed constitutively in cells, unlike the tightly regulated ChaC1. Moreover, lower eukaryotes have a single member of the ChaC family that appears to be orthologous to ChaC2. In addition, we determined the crystal structure of yeast ChaC2 homologue, GCG1, at 1.34 Å resolution, which represents the first structure of the ChaC family of proteins. The catalytic site is defined by a fortuitous benzoic acid molecule bound to the crystal structure. The mechanism for binding and catalytic activity of this new enzyme of glutathione degradation, which is involved in continuous but basal turnover of cytosolic glutathione, is proposed.
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Affiliation(s)
- Amandeep Kaur
- From the Department of Biological Sciences, Indian Institute of Science Education and Research, Mohali, S.A.S. Nagar, Punjab 140306, India and
| | - Ruchi Gautam
- the CSIR-Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Sector 39A, Chandigarh 160036, India
| | - Ritika Srivastava
- the CSIR-Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Sector 39A, Chandigarh 160036, India
| | - Avinash Chandel
- From the Department of Biological Sciences, Indian Institute of Science Education and Research, Mohali, S.A.S. Nagar, Punjab 140306, India and
| | - Akhilesh Kumar
- From the Department of Biological Sciences, Indian Institute of Science Education and Research, Mohali, S.A.S. Nagar, Punjab 140306, India and
| | - Subramanian Karthikeyan
- the CSIR-Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR), Sector 39A, Chandigarh 160036, India
| | - Anand Kumar Bachhawat
- From the Department of Biological Sciences, Indian Institute of Science Education and Research, Mohali, S.A.S. Nagar, Punjab 140306, India and
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46
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Neogi SB, Khanna R, Chauhan M, Sharma J, Gupta G, Srivastava R, Prabhakar PK, Khera A, Kumar R, Zodpey S, Paul VK. Inpatient care of small and sick newborns in healthcare facilities. J Perinatol 2016; 36:S18-S23. [PMID: 27924106 PMCID: PMC5144116 DOI: 10.1038/jp.2016.186] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Neonatal units in teaching and non-teaching hospitals both in public and private hospitals have been increasing in number in the country since the sixties. In 1994, a District Newborn Care Programme was introduced as a part of the Child Survival and Safe Motherhood Programme (CSSM) in 26 districts. Inpatient care of small and sick newborns in the public health system got a boost under National Rural Health Mission with the launch of the national programme on facility-based newborn care (FBNC). This has led to a nationwide creation of Newborn Care Corners (NBCC) at every point of child birth, newborn stabilization units (NBSUs) at First Referral Units (FRUs) and special newborn care units (SNCUs) at district hospitals. Guidelines and toolkits for standardized infrastructure, human resources and services at each level have been developed and a system of reporting data on FBNC created. Till March 2015, there were 565 SNCUs, 1904 NBSUs and 14 163 NBCCs operating in the country. There has been considerable progress in operationalizing SNCUs at the district hospitals; however establishing a network of SNCUs, NBSUs and NBCCs as a composite functional unit of newborn care continuum at the district level has lagged behind. NBSUs, the first point of referral for the sick newborn, have not received the desired attention and have remained a weak link in most districts. Other challenges include shortage of physicians, and hospital beds and absence of mechanisms for timely repair of equipment. With admission protocols not being adequately followed and a weak NBSU system, SNCUs are faced with the problem of admission overload and poor quality of care. Applying best practices of care at SNCUs, creating more NBSU linkages and strengthening NBCCs are important steps toward improving quality of FBNC. This can be further improved with regular monitoring and mentoring from experienced pediatricians, and nurses drawn from medical colleges and the private sector. In addition there is a need to further increase such units to address the unmet need of facility-based care.
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Affiliation(s)
- S B Neogi
- Indian Institute of Public Health (Delhi), Public Health Foundation of India, Delhi, India
| | - R Khanna
- Saving Newborn Lives, Save the Children, India
| | - M Chauhan
- Indian Institute of Public Health (Delhi), Public Health Foundation of India, Delhi, India
| | - J Sharma
- Indian Institute of Public Health (Delhi), Public Health Foundation of India, Delhi, India
| | - G Gupta
- UNICEF, Country Office, New Delhi, India
| | - R Srivastava
- Ministry of Health and Family Welfare, Government of India, New Delhi, India
| | - P K Prabhakar
- Ministry of Health and Family Welfare, Government of India, New Delhi, India
| | - A Khera
- Ministry of Health and Family Welfare, Government of India, New Delhi, India
| | - R Kumar
- Ministry of Health and Family Welfare, Government of India, New Delhi, India,Ministry of Health and Family Welfare, Govt of India, Nirman Bhawan, New Delhi 110011, India. E-mail:
| | - S Zodpey
- Indian Institute of Public Health (Delhi), Public Health Foundation of India, Delhi, India
| | - V K Paul
- Department of Pediatrics, All India Institute of Medical Sciences, New Delhi, India
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47
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Abstract
About 0.75 million neonates die every year in India, the highest for any country in the world. The neonatal mortality rate (NMR) declined from 52 per 1000 live births in 1990 to 28 per 1000 live births in 2013, but the rate of decline has been slow and lags behind that of infant and under-five child mortality rates. The slower decline has led to increasing contribution of neonatal mortality to infant and under-five mortality. Among neonatal deaths, the rate of decline in early neonatal mortality rate (ENMR) is much lower than that of late NMR. The high level and slow decline in early NMR are also reflected in a high and stagnant perinatal mortality rate. The rate of decline in NMR, and to an extent ENMR, has accelerated with the introduction of National Rural Health Mission in mid-2005. Almost all states have witnessed this phenomenon, but there is still a huge disparity in NMR between and even within the states. The disparity is further compounded by rural-urban, poor-rich and gender differentials. There is an interplay of different demographic, educational, socioeconomic, biological and care-seeking factors, which are responsible for the differentials and the high burden of neonatal mortality. Addressing inequity in India is an important cross-cutting action that will reduce newborn mortality.
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Affiliation(s)
- M J Sankar
- Department of Pediatrics, All India Institute of Medical Sciences, New Delhi, India
| | - S B Neogi
- Indian Institute of Public Health (Delhi), Public Health Foundation of India, Delhi, India
| | - J Sharma
- Indian Institute of Public Health (Delhi), Public Health Foundation of India, Delhi, India
| | - M Chauhan
- Indian Institute of Public Health (Delhi), Public Health Foundation of India, Delhi, India
| | - R Srivastava
- Ministry of Health and Family Welfare, Government of India, New Delhi, India
| | - P K Prabhakar
- Ministry of Health and Family Welfare, Government of India, New Delhi, India
| | - A Khera
- Ministry of Health and Family Welfare, Government of India, New Delhi, India
| | - R Kumar
- Ministry of Health and Family Welfare, Government of India, New Delhi, India
| | - S Zodpey
- Indian Institute of Public Health (Delhi), Public Health Foundation of India, Delhi, India
| | - V K Paul
- Department of Pediatrics, All India Institute of Medical Sciences, New Delhi, India
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48
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Sylvester D, Srivastava R, Lamplugh A, Allgar V, Snowden C, Bhandari S, England J. Effect on mortality of elective parathyroid surgery in one hundred and three patients with chronic kidney disease: our experience. Clin Otolaryngol 2016; 42:1025-1029. [PMID: 27727518 DOI: 10.1111/coa.12768] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/05/2016] [Indexed: 11/30/2022]
Affiliation(s)
- D Sylvester
- Department of Otolaryngology, Castle Hill Hospital, Cottingham, UK
| | - R Srivastava
- Department of Otolaryngology, Castle Hill Hospital, Cottingham, UK
| | - A Lamplugh
- Department of Renal Medicine, Hull Royal Infirmary, Hull, UK
| | - V Allgar
- Department of Health Sciences, The University of York, Heslington, York, UK
| | - C Snowden
- Department of Anaesthesia, Castle Hill Hospital, Cottingham, UK
| | - S Bhandari
- Department of Renal Medicine, Hull Royal Infirmary, Hull, UK
| | - J England
- Department of Otolaryngology, Castle Hill Hospital, Cottingham, UK
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49
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Ramar M, S. Rawat S, Srivastava R, K. Dhawan S, K. Suman C. Impact Of Cross Linking Chain Of N,N’-bis(napthalen-|-y|)-N,N’-bis(phenyl)-benzidine On Temperature dependent Transport Properties. ACTA ACUST UNITED AC 2016. [DOI: 10.5185/amlett.2016.6305] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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50
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Brightwell R, Amobi A, Wooten K, Srivastava R, Odunsi K, Shrikant P. Developing combinatorial approaches for durable cancer treatment. Gynecol Oncol 2016. [DOI: 10.1016/j.ygyno.2016.04.509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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