Bacterial indicator taxa in soils under different long-term agricultural management

AIMS

In this study, the species indicator test was used to identify key bacterial taxa affected by changes in the soil environment as a result of conservation agriculture or conventional practices.

METHODS AND RESULTS

Soils cultivated with wheat (Triticum spp. L.) and maize (Zea mays L.) under different raised bed planting systems for 20 years, that is, varying crop residue and fertilizer management, were used. Taxonomic- and divergence-based 16S-metagenomics, and IndVal analysis were used to study the bacterial communities and identify indicator taxa (genus and OTU97 ) affected by agricultural practices. Although, some phyla were affected significantly by different treatments, the taxonomic assemblages at phylum level were similar. Bacterial taxa related to different processes of the N-cycle were indicators of different fertilization rates, for example, Azorhizobium, Nostoc and Nitrosomonas. A large number of OTU97 were indicators for conventionally tilled beds and their distribution was defined by soil organic carbon. IndVal analysis identified different taxa in each of the residue management systems. This suggests that although the same organic material remains in the field, crop residue management affects specific taxa. The taxa indicator of the burned residues belonged mainly to the order SBR1031 (Anaerolineae, Chloroflexi), and the genera Bacillus and Alicyclobacillus.

CONCLUSIONS

N-fertilizer application rates affected N-cycling taxa. Tillage affected Actinobacteria members and organic matter decomposers. Although the same crop residue was retained in the field, organic material management was important for specific taxa.

SIGNIFICANCE AND IMPACT OF THE STUDY

In this study, we report that agricultural practice affected soil bacterial communities. We also identified distinctive taxa and related their distribution to changes in the soil environment resulting from different agricultural practices.

Microbial communities to mitigate contamination of PAHs in soil--possibilities and challenges: a review

BACKGROUND, AIM, AND SCOPE

Although highly diverse and specialized prokaryotic and eukaryotic microbial communities in soil degrade polycyclic aromatic hydrocarbons (PAHs), most of these are removed slowly. This review will discuss the biotechnological possibilities to increase the microbial dissipation of PAHs from soil as well as the main biological and biotechnological challenges.

DISCUSSION AND CONCLUSIONS

Microorganism provides effective and economically feasible solutions for soil cleanup and restoration. However, when the PAHs contamination is greater than the microbial ability to dissipate them, then applying genetically modified microorganisms might help to remove the contaminant. Nevertheless, it is necessary to have a more holistic review of the different individual reactions that are simultaneously taking place in a microbial cell and of the interactions microorganism-microorganism, microorganism-plant, microorganism-soil, and microorganisms-PAHs.

PERSPECTIVES

Elucidating the function of genes from the PAHs-polluted soil and the study in pure cultures of isolated PAHs-degrading organisms as well as the generation of microorganisms in the laboratory that will accelerate the dissipation of PAHs and their safe application in situ have not been studied extensively. There is a latent environmental risk when genetically engineered microorganisms are used to remedy PAHs-contaminated soil.

The bacterial community in 'taberna' a traditional beverage of Southern Mexico

AIMS

To characterize the bacterial community of taberna, an alcoholic traditional beverage from the Southern part of Mexico produced by the fermentation of the coyol palm sap (Acrocomia aculeate).

METHODS AND RESULTS

Bacterial 16S rDNA libraries were constructed from metagenomic DNA extracted during the fermentation process at 0, 60 and 108 h. A total of 154 clones were sequenced, and 13, 10 and nine unique sequences were found at each sampling time. At the onset of the fermentation, Zymomonas mobilis, Fructobacillus spp., Pantoea agglomerans and other Gammaproteobacteria were detected. After 60 h, lactic acid bacteria were found and 30% of clones in the library were related to Lactobacillus nagelii, L. sucicola and L. sp. By the end of the experiment, i.e. after 108 h, the bacterial community included Z. mobilis, Lact. nagelii and Acetobacter pasteurianus.

CONCLUSIONS

Our results suggest that Z. mobilis population represented an important proportion of the bacterial community (60-80%), as well as the lactobacilli during the fermentation process. The bacterial diversity was low and decreased as the fermentation progressed.

SIGNIFICANCE AND IMPACT OF THE STUDY

This culture-independent study suggests that Z. mobilis and lactobacilli play an important role in the alcoholic fermentation of the taberna beverage.

Remediation of PAHs in a saline-alkaline soil amended with wastewater sludge and the effect on dynamics of C and N

Contamination of soil with hydrocarbons occurs frequently and organic material, such as sludge, is often applied to accelerate their dissipation. Little is known, however, how sludge characteristics affect removal of polycyclic aromatic hydrocarbons (PAHs) from alkaline-saline soil. Soil of the former lake Texcoco with pH 9 and electrolytic conductivity 7 dS m(-1) was contaminated with phenanthrene and anthracene and amended with sludge, sterilized sludge, sludge adjusted to maintain pH in contaminated soil or glucose plus an inorganic N and P source while emission of CO2 and concentrations of NH4+, NO3-, NO2-, extractable P, phenanthrene and anthracene were monitored in an aerobic incubation experiment of 112 days. An agricultural soil from Acolman treated in the same way served as control. Contaminating the Texcoco soil increased emission of CO2 significantly, but not in the Acolman soil. After 112 days, the largest concentration of anthracene and phenanthrene was found in the Acolman soil added with glucose and the lowest in the sludge-amended soil. The largest concentration of anthracene in the Texcoco soil was found in soil added with sterile sludge and the lowest in the sludge-amended soil. The largest concentration of phenanthrene in the Texcoco soil was found in the glucose-amended soil and the lowest in the sludge-amended soil. It was found that addition of sludge removed more phenanthrene, but not anthracene from soil compared to the unamended contaminated soil, glucose inhibited dissipation of PAHs while microorganisms in the sludge contributed to their removal, and adjustment of soil pH had no effect. Organic material can be used to accelerate removal of hydrocarbons from soil, but the effect is controlled by soil type, contaminant and organic material characteristics.

Impact of moisture dynamic and sun light on anthracene removal from soil

In a previous study, remediation of anthracene from soil was faster in the top 0-2 cm layer than in the lower soil layers. It was not clear whether this faster decrease was due to biotic or abiotic processes. Anthracene-contaminated soil columns were covered with black or transparent perforated polyethylene so that aeration occurred but that fluctuations in water content were minimal and light could reach (LIGHT treatment) or not reach the soil surface (DARK treatment), or left uncovered so that soil water content fluctuate and light reached the soil surface (OPEN treatment). The amount of anthracene, microbial biomass C, and microbial activity as reflected by the amount of CO(2) produced within 3 days were determined in the 0-2 cm, 2-8 cm, and 8-15 cm layer after 0, 3, 7, 14, and 28 days. In the 0-2 cm layer of the OPEN treatment, 17% anthracene remained, 48% in the LIGHT treatment and 61% in the DARK treatment after 28 days. In the 2-8 cm and 8-15 cm layer, treatment had no significant effect on the dissipation of anthracene from soil after 14 and 28 days. It was found that light and fluctuations in water content stimulated the removal of anthracene from the top 0-2 cm soil layer, but not from the lower soil layers. It can be speculated that covering contaminated soil or piling it up will inhibit the dissipation of the contaminant.

Influence of catclaw Mimosa monancistra on the dissipation of soil PAHs

Phytoremediation is a cost-effective biotechnology for decontamination of polycyclic aromatic hydrocarbons (PAHs)-polluted soils. A greenhouse experiment was conducted to determine the growth of Mimosa monancistra, a N2-fixing leguminous plants, and its capacity to remove phenanthrene, anthracene, and benzo(a)pyrene (BaP)from soil. The PAHs decreased shoot and root dry biomass of M. monancistra 2.7- and 3.9-fold, respectively, compared to uncontaminated soil and inhibited nodule formation. The removal of phenanthrene and anthracene was similar in vegetated and unvegetated soil, but the dissipation of BaP was significantly faster in vegetated soil as compared to unvegetated soil after 14, 56, 70, and 90 d. After 90 d, dissipation of BaP was 96% in vegetated soil and 87% in unvegetated soil. Nitrification and ammonification were not affected by the addition of PAHs as concentrations of NH4+, NO2-, and NO3- were similar in contaminated and uncontaminated vegetated soil. Growth of M. monancistra was inhibited by contamination with hydrocarbons, but removal of BaP was accelerated in the rhizosphere.

The endocannabinoid system controls key epileptogenic circuits in the hippocampus

Balanced control of neuronal activity is central in maintaining function and viability of neuronal circuits. The endocannabinoid system tightly controls neuronal excitability. Here, we show that endocannabinoids directly target hippocampal glutamatergic neurons to provide protection against acute epileptiform seizures in mice. Functional CB1 cannabinoid receptors are present on glutamatergic terminals of the hippocampal formation, colocalizing with vesicular glutamate transporter 1 (VGluT1). Conditional deletion of the CB1 gene either in cortical glutamatergic neurons or in forebrain GABAergic neurons, as well as virally induced deletion of the CB1 gene in the hippocampus, demonstrate that the presence of CB1 receptors in glutamatergic hippocampal neurons is both necessary and sufficient to provide substantial endogenous protection against kainic acid (KA)-induced seizures. The direct endocannabinoid-mediated control of hippocampal glutamatergic neurotransmission may constitute a promising therapeutic target for the treatment of disorders associated with excessive excitatory neuronal activity.