Universal DNA methylation age across mammalian tissues

Aging, often considered a result of random cellular damage, can be accurately estimated using DNA methylation profiles, the foundation of pan-tissue epigenetic clocks. Here, we demonstrate the development of universal pan-mammalian clocks, using 11,754 methylation arrays from our Mammalian Methylation Consortium, which encompass 59 tissue types across 185 mammalian species. These predictive models estimate mammalian tissue age with high accuracy (r > 0.96). Age deviations correlate with human mortality risk, mouse somatotropic axis mutations and caloric restriction. We identified specific cytosines with methylation levels that change with age across numerous species. These sites, highly enriched in polycomb repressive complex 2-binding locations, are near genes implicated in mammalian development, cancer, obesity and longevity. Our findings offer new evidence suggesting that aging is evolutionarily conserved and intertwined with developmental processes across all mammals.

Prolonged baleen hormone cycles suggest atypical reproductive endocrinology of female bowhead whales

Serial measurements of hormone concentrations along baleen plates allow for reconstructions of mysticete whale reproductive histories. We assessed gestation and calving interval in bowhead whales (Balaena mysticetus) by measuring progesterone, oestradiol, corticosterone and nitrogen stable isotope ratios (δ¹⁵N) along baleen of 10 females from the eastern Canada-west Greenland population. Three immature females (body size < 14.32 m) had uniformly low progesterone concentrations across their baleen, while seven mature females (body size ≥ 14.35 m) had repeated, sustained elevations of progesterone indicative of pregnancies. The mean duration of progesterone elevations (23.6 ± 1.50 months) was considerably longer than the approximately 14 month gestation previously estimated for this species. We consider several possible explanations for this observation, including delayed implantation or sequential ovulations prior to gestation, strategies that would allow females to maximize their fitness in variable Arctic conditions, as well as suggest modified criteria defining gestation as a shorter component of the entire progesterone peak. Calving intervals varied within and among individuals (mean = 3.7 years; range = range 2.8-5.7 years), providing population-specific reproductive estimates for growth models used in bowhead whale management and conservation.

Trends of persistent organic pollutants in ringed seals (Phoca hispida) from the Canadian Arctic

Ringed seals (Phoca hispida) have been used as bioindicator species of environmental contamination in Canada since the 1970s. In the present study, seals were harvested during subsistence hunts in four regions of the Canadian Arctic: Beaufort Sea, Arctic Archipelago, Hudson Bay, and coastal Labrador. An extensive suite of persistent organic pollutants (POPs) was determined in seal blubber collected for multiple years between 1972 and 2016. Results from this long-term study indicate geographical differences in the contaminant concentrations in seals and the significant general decrease of most POPs, including polychlorinated biphenyls (PCBs), dichlorodiphenyltrichloroethane (DDT) and related compounds, chlordanes (CHL), and hexachlorocyclohexanes (HCH) over time in ringed seals. The highest decrease rates (up to -9.1%/year for α-HCH) were found in seals from the Hudson Bay region where all chemicals investigated have significantly decreased since 1986. Significant increases in concentrations of hexachlorobenzene (HCB) in seals from Labrador and β-HCH in Sachs Harbour, NT and Arctic Archipelago were observed. Site-specific and contaminant-specific associations between climate pattern (i.e., Arctic Oscillation, North Atlantic Oscillation, and Pacific/North American pattern) and mean ice-coverage (total, first-year ice, and old-ice) were found at sites with the longest time trend data (i.e., Arviat, Sachs Harbour/Ulukhaktok and Resolute Bay). Overall, results suggest that North American and international regulations have led to the long-term reduction of most POPs in Canadian Arctic ringed seals by reducing emissions from primary sources. However, other sources of legacy compounds (e.g., environmental reservoirs) as well changes in food web composition and structure in relation to climate changes could also be influencing the very slow rates of decline, or stable levels, of contaminants found in seals at some sites. Further work is warranted to discern between co-variation of climate changes and contaminant concentrations and cause-and-effect relationships.

Spatial and temporal trends of alternative flame retardants and polybrominated diphenyl ethers in ringed seals (Phoca hispida) across the Canadian Arctic

Concentrations of alternative flame retardants and polybrominated diphenyl ethers (PBDEs) were analyzed in ringed seal (Phoca hispida) blubber collected across the Canadian Arctic during subsistence hunts between 1998 and 2013. More than 80% of sampled animals were females and juvenile males. The highest mean ΣPBDE concentrations (sum of 13 congeners) were found in seals from Nain (Nunatsiavut) as well as Inukjuaq and Arviat (Hudson Bay) and the lowest mean levels were found in seals from Lancaster Sound. BDE-47 and -99 were the predominant PBDE congeners quantified in ringed seals. The most frequently detected non-PBDE flame retardants were polybrominated biphenyl 101 (BB-101, 57% of samples analyzed for this chemical), hexabromocyclododecane (HBCDD; 38%), hexabromobenzene (HBB, 30%), and 2-ethylhexyl-2,3,4,5-tetrabromobenzoate (EHTeBB, 23%). The relative trophic position of seals, estimated using stable isotopes, did not vary over time and did not influence flame retardant blubber concentrations. The relative carbon source increased over time at Arviat and Resolute Bay and weak relationships were observed with ΣPBDEs in blubber of seals. ΣPBDEs increased significantly from 1998 to 2008 in ringed seals from East Baffin and subsequently decreased in recent years. PBDE levels at other sites fluctuated slightly over time. HBCDD concentrations increased at several sites over the past decade. The presence of flame retardants in ringed seals suggests their persistence and their continuous inputs in the Canadian Arctic environment. Monitoring and research on the effects of these contaminants in seals are warranted given the importance of this species in Arctic marine food webs and for local communities.

Seasons of the ringed seal: pelagic open-water hyperphagy, benthic feeding over winter and spring fasting during molt

Context The ringed seal (Phoca hispida), a small phocid seal with a circumpolar Arctic distribution and a strong association with sea ice, occurs at the southern limit of its range in Hudson and James Bays: an area that experiences complete ice cover in winter and complete open water in summer. Because of the high seasonal variability in environmental conditions, it is expected that ringed seals experience seasonal changes in diet and foraging habitat, which will be reflected in body condition and biomarkers of stable isotopes and fatty acids. Aims The purpose of the present study was to investigate intra-annual variation in the feeding habits and body condition of the ringed seal. Methods Tissue samples and morphological measurements from south-eastern Hudson Bay ringed seals were obtained every month during the Inuit subsistence hunt from November 2009 to May 2011 (n = 192). Muscle samples were used for δ15N and δ13C stable isotope analysis, blubber was used for analysis of fatty acid composition, bodyweight and sculp weight were used to estimate percentage blubber, and lower right canines were used to determine age. Key results Fatty acid composition, δ15N, and δ13C varied significantly by season, suggesting seasonal changes in foraging habitat and diet. Variation in percentage blubber indicated that poorest body condition occurs following the molting and fasting period, followed by a gradual increase from late summer through fall, with the highest body condition occurring in time for freeze-up in December. Key conclusions Patterns of δ13C indicate pelagic feeding during the open-water season (August–December) when fat and energy stores are replenished, increased benthic foraging during the period of ice cover (January–May), followed by a period of fasting during the spring molt (June–July). Fatty acid composition suggested seasonal changes in diet that could include increased importance of pelagic fish in the fall during the period of positive energy balance. Implications The first continuous collection of ringed seal tissue samples provided a comprehensive seasonal pattern of biomarker composition, which is baseline data that have important applications for short-term management and ecology studies as well as long-term conservation and monitoring programs.

Mercury trends in ringed seals (Phoca hispida) from the western Canadian Arctic since 1973: associations with length of ice-free season

We examined a unique time series of ringed seal (Phoca hispida) samples collected from a single location in the western Canadian Arctic between 1973 and 2007 to test for changes in total mercury (THg) in muscle tissue associated with (1) year and (2) length of ice-free season. We found no temporal trend with muscle THg whereas a curvilinear relationship existed with the length of ice-free season: seals attaimed higher THg in short (2 months) and long (5 months) ice-free seasons. delta 15N and delta13C in muscle tissue did not illustrate significant trends with ice-free days. We estimated that the turnover time of THg in muscle was about twice as long as stable isotope turnover in muscle, possibly explaining the lack of trend with stable isotopes in association with ice-free duration. Our discussion explains how summer environmental conditions may influence the composition of prey (mercury exposure) available to ringed seals. Results offer insight into how marine mammals may respond to directional changes in the Arctic ice-free season.

Size and biomagnification: How Habitat selection explains beluga mercury levels

Mercury (Hg) levels in the Beaufort Sea beluga (Delphinapterus leucas) population increased during the 1990s; levels have since declined but remain higher than the 1980s. The diet of this beluga population is not well-known, thus it is difficult to assess dietary Hg sources. During the summer, the Beaufort Sea belugas segregate by length, sex, and reproductive status corresponding to habitat use that may result in feeding differences and ultimately Hg uptake. To test this hypothesis, we examine beluga dietary variation using fatty acid profiles and determine which biological variables best predict diet Relationships between biological variables and fatty acids were further evaluated with stable isotopes and Hg concentrations in liver and muscle. Hg concentrations in muscle were better related to liver delta15N than muscle delta15N. Stable isotopes and fatty acids are compared in their ability to describe dietary Hg processes in beluga. Fatty acids provided support for influences of whale behavior on dietary Hg uptake, whereas stable isotopes inferred tissue Hg metabolic rates. Here, we show beluga length drives diet variability leading to differences in Hg uptake and biomagnification processes dominate beluga Hg levels over Hg bioaccumulation over time.

Enhancements of the edges of temporal masking functions by complex patterns of overshoot and undershoot

The purpose of this report is to present new data that provide a novel perspective on temporal masking, different from that found in the classical auditory literature on this topic. Specifically, measurement conditions are presented that minimize rather than maximize temporal spread of masking for a gated (200-ms) narrow-band (405-Hz-wide) noise masker logarithmically centered at 2500 Hz. Masked detection thresholds were measured for brief sinusoids in a two-interval, forced-choice (21FC) task. Detection was measured at each of 43 temporal positions within the signal observation interval for the sinusoidal signal presented either preceding, during, or following the gating of the masker, which was centered temporally within each 500-ms observation interval. Results are presented for three listeners; first, for detection of a 1900-Hz signal across a range of masker component levels (0-70 dB SPL) and, second, for masked detection as a function of signal frequency (fs = 500-5000 Hz) for a fixed masker component level (40 dB SPL). For signals presented off-frequency from the masker, and at low-to-moderate masker levels, the resulting temporal masking functions are characterized by sharp temporal edges. The sharpness of the edges is accentuated by complex patterns of temporal overshoot and undershoot, corresponding with diminished and enhanced detection, respectively, at both masker onset and offset. This information about the onset and offset timing of the gated masker is faithfully represented in the temporal masking functions over the full decade range of signal frequencies (except for fs=2500 Hz presented at the center frequency of the masker). The precise representation of the timing information is remarkable considering that the temporal envelope characteristics of the gated masker are evident in the remote masking response at least two octaves below the frequencies of the masker at a cochlear place where little or no masker activity would be expected. This general enhancement of the temporal edges of the masking response is reminiscent of spectral edge enhancement by lateral suppression/inhibition.

Differential habitat use and sexual segregation in the Central Arctic caribou herd

Distribution of the Central Arctic caribou herd is characterized by segregation of the sexes and different habitat preferences by male and female caribou over most of the annual cycle. During all periods except late winter and postcalving, females showed a more northern distribution than did males. Females used riparian habitats less than availability and were generally farther from major river valleys than expected during all seasons except late winter. In contrast, males preferred riparian habitats from late winter to calving and were generally found closer to river valleys than were females from late winter to August dispersal. During the spring and calving periods near the coast females preferred sedge meadow and used riparian habitat less than availability whereas males preferred riparian and tussock tundra and used sedge meadow less than availability. It is theorized that sexual segregation and differential habitat use reflect predator avoidance strategies of females with calves and optimal foraging by adult males.

Distribution and habitat use of the Bluenose caribou herd in mid-winter

The mid-winter distribution and densities of the Bluenose caribou herd were compared with previous surveys over six years and were similar in all years except 1981 when exceptionally mild weather prevailed. Differences in group size, distribution and habitat use between sexes were noted in 1983. Caribou were distributed disproportionately to availability of vegetation types and used lakes significantly more than expected based on their occurrence. Male groups used conifer cover more than did female-calf groups which used open areas (lakes, fens, bogs) more than males. Cow-calf groups chose areas with a higher small lake density compared to lake density generally available. Generally caribou preferred habitat between 200 and 300 m in elevation with high densities of lakes less than 1 km2 in size. Snow depths and hardness were greater in most unoccupied habitats than in occupied habitats. Wolves were associated with high densities of cow/calf groups.