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Mengist MF, Bostan H, De Paola D, Teresi SJ, Platts AE, Cremona G, Qi X, Mackey T, Bassil NV, Ashrafi H, Giongo L, Jibran R, Chagné D, Bianco L, Lila MA, Rowland LJ, Iovene M, Edger PP, Iorizzo M. Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum). New Phytol 2023; 237:1024-1039. [PMID: 35962608 PMCID: PMC10087351 DOI: 10.1111/nph.18428] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 08/01/2022] [Indexed: 06/02/2023]
Abstract
Understanding chromosome recombination behavior in polyploidy species is key to advancing genetic discoveries. In blueberry, a tetraploid species, the line of evidences about its genetic behavior still remain poorly understood, owing to the inter-specific, and inter-ploidy admixture of its genome and lack of in depth genome-wide inheritance and comparative structural studies. Here we describe a new high-quality, phased, chromosome-scale genome of a diploid blueberry, clone W85. The genome was integrated with cytogenetics and high-density, genetic maps representing six tetraploid blueberry cultivars, harboring different levels of wild genome admixture, to uncover recombination behavior and structural genome divergence across tetraploid and wild diploid species. Analysis of chromosome inheritance and pairing demonstrated that tetraploid blueberry behaves as an autotetraploid with tetrasomic inheritance. Comparative analysis demonstrated the presence of a reciprocal, heterozygous, translocation spanning one homolog of chr-6 and one of chr-10 in the cultivar Draper. The translocation affects pairing and recombination of chromosomes 6 and 10. Besides the translocation detected in Draper, no other structural genomic divergences were detected across tetraploid cultivars and highly inter-crossable wild diploid species. These findings and resources will facilitate new genetic and comparative genomic studies in Vaccinium and the development of genomic assisted selection strategy for this crop.
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Affiliation(s)
- Molla F. Mengist
- Plants for Human Health InstituteNorth Carolina State UniversityKannapolisNC28081USA
| | - Hamed Bostan
- Plants for Human Health InstituteNorth Carolina State UniversityKannapolisNC28081USA
| | - Domenico De Paola
- Institute of Biosciences and BioresourcesNational Research Council of ItalyBari70126Italy
| | - Scott J. Teresi
- Department of HorticultureMichigan State UniversityEast LansingMI48824USA
| | - Adrian E. Platts
- Department of HorticultureMichigan State UniversityEast LansingMI48824USA
| | - Gaetana Cremona
- Institute of Biosciences and BioresourcesNational Research Council of ItalyPorticiNA80055Italy
| | - Xinpeng Qi
- Genetic Improvement for Fruits and Vegetables LaboratoryBeltsville Agricultural Research Center‐West, US Department of Agriculture, Agricultural Research ServiceBeltsvilleMD20705USA
| | - Ted Mackey
- Horticultural Crops Research UnitUS Department of Agriculture, Agricultural Research ServiceCorvallisOR97330USA
| | - Nahla V. Bassil
- National Clonal Germplasm RepositoryUS Department of Agriculture, Agricultural Research ServiceCorvallisOR97333USA
| | - Hamid Ashrafi
- Department of Horticultural ScienceNorth Carolina State UniversityRaleighNC27695USA
| | - Lara Giongo
- Foundation of Edmund MachSan Michele all'AdigeTN38098Italy
| | - Rubina Jibran
- Plant & Food ResearchFitzherbertPalmerston North4474New Zealand
| | - David Chagné
- Plant & Food ResearchFitzherbertPalmerston North4474New Zealand
| | - Luca Bianco
- Foundation of Edmund MachSan Michele all'AdigeTN38098Italy
| | - Mary A. Lila
- Plants for Human Health InstituteNorth Carolina State UniversityKannapolisNC28081USA
| | - Lisa J. Rowland
- Genetic Improvement for Fruits and Vegetables LaboratoryBeltsville Agricultural Research Center‐West, US Department of Agriculture, Agricultural Research ServiceBeltsvilleMD20705USA
| | - Marina Iovene
- Institute of Biosciences and BioresourcesNational Research Council of ItalyPorticiNA80055Italy
| | - Patrick P. Edger
- Department of HorticultureMichigan State UniversityEast LansingMI48824USA
| | - Massimo Iorizzo
- Plants for Human Health InstituteNorth Carolina State UniversityKannapolisNC28081USA
- Department of Horticultural ScienceNorth Carolina State UniversityRaleighNC27695USA
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Mengist MF, Grace MH, Mackey T, Munoz B, Pucker B, Bassil N, Luby C, Ferruzzi M, Lila MA, Iorizzo M. Dissecting the genetic basis of bioactive metabolites and fruit quality traits in blueberries ( Vaccinium corymbosum L.). Front Plant Sci 2022; 13:964656. [PMID: 36119607 PMCID: PMC9478557 DOI: 10.3389/fpls.2022.964656] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Accepted: 07/26/2022] [Indexed: 06/01/2023]
Abstract
Blueberry is well-recognized as a healthy fruit with functionality derived largely from anthocyanin and chlorogenic acid. Despite their importance, no study to date has evaluated the genetic basis of these bioactives in blueberries and their relationship with fruit quality traits. Hence, to fill this gap, a mapping population including 196 F1 individuals was phenotyped for anthocyanin and chlorogenic acid concentration and fruit quality traits (titratable acidity, pH, and total soluble solids) over 3 years and data were used for QTL mapping and correlation analysis. Total soluble solids and chlorogenic acid were positively correlated with glycosylated anthocyanin and total anthocyanin, respectively, indicating that parallel selection for these traits is possible. Across all the traits, a total of 188 QTLs were identified on chromosomes 1, 2, 4, 8, 9, 11 and 12. Notably, four major regions with overlapping major-effect QTLs were identified on chromosomes 1, 2, 4 and 8, and were responsible for acylation and glycosylation of anthocyanins in a substrate and sugar donor specific manner. Through comparative transcriptome analysis, multiple candidate genes were identified for these QTLs, including glucosyltransferases and acyltransferases. Overall, the study provides the first insights into the genetic basis controlling anthocyanins accumulation and composition, chlorogenic acid and fruit quality traits, and establishes a framework to advance genetic studies and molecular breeding for anthocyanins in blueberry.
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Affiliation(s)
- Molla Fentie Mengist
- Plants for Human Health Institute, North Carolina State University, Kannapolis, NC, United States
| | - Mary H. Grace
- Plants for Human Health Institute, North Carolina State University, Kannapolis, NC, United States
- Department of Food, Bioprocessing and Nutrition Sciences, North Carolina State University, Raleigh, NC, United States
| | - Ted Mackey
- Horticultural Crops Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Corvallis, OR, United States
| | - Bryan Munoz
- Plants for Human Health Institute, North Carolina State University, Kannapolis, NC, United States
| | - Boas Pucker
- Institute of Plant Biology, TU Braunschweig, Braunschweig, Germany
- BRICS, TU Braunschweig, Braunschweig, Germany
| | - Nahla Bassil
- National Clonal Germplasm Repository, USDA-ARS, Corvallis, OR, United States
| | - Claire Luby
- Horticultural Crops Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Corvallis, OR, United States
| | - Mario Ferruzzi
- Plants for Human Health Institute, North Carolina State University, Kannapolis, NC, United States
- Department of Food, Bioprocessing and Nutrition Sciences, North Carolina State University, Raleigh, NC, United States
| | - Mary Ann Lila
- Plants for Human Health Institute, North Carolina State University, Kannapolis, NC, United States
- Department of Food, Bioprocessing and Nutrition Sciences, North Carolina State University, Raleigh, NC, United States
| | - Massimo Iorizzo
- Plants for Human Health Institute, North Carolina State University, Kannapolis, NC, United States
- Department of Horticultural Science, North Carolina State University, Raleigh, NC, United States
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Merrill TC, Mackey T, Luc R, Lung D, Naseem A, Abduo J. Effect of Chairside CAD/CAM Restoration Type on Marginal Fit Accuracy: A Comparison of Crown, Inlay and Onlay Restorations. Eur J Prosthodont Restor Dent 2021; 29:119-127. [PMID: 33393741 DOI: 10.1922/ejprd_2121abduo09] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 04/09/2023]
Abstract
Chairside CAD/CAM is a convenient approach for fabricating dental restorations. However, the effect of CAD/CAM restoration type on marginal fit accuracy has not been fully investigated. This study evaluated of the marginal fit accuracy of 3 chairside CAD/ CAM restoration types (crown, inlay and onlay) using CEREC Bluecam (BC) and CEREC Omnicam (OC) scanners. Three artificial maxillary first molars received crown, inlay and onlay preparations. A total of 10 CAD/CAM ceramic restorations were produced for each tooth by each intraoral scanner. The marginal gap was measured along the preparation margin. For the BC, all the restorations had similar marginal gaps (crowns = 113.9 μm; inlays = 120.9 μm; onlays = 132.5 μm) (p = 0.20), while for the OC, the crowns (72.2 μm) and the inlays (74.9 μm) exhibited better marginal fit than the onlays (96.4 μm) (p = 0.003). For every restoration type, the OC provided a superior outcome compared with the BC. Therefore, the restoration type influenced the marginal gap, where the crowns tended to have the least marginal gap while the onlays had the greatest marginal gap. The newer scanner (OC) of the same manufacturer was more accurate than the older scanner (BC).
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Affiliation(s)
- T C Merrill
- Restorative Section, Melbourne Dental School, Melbourne University, 720 Swanston Street, Melbourne, Victoria 3010, Australia
| | - T Mackey
- Restorative Section, Melbourne Dental School, Melbourne University, 720 Swanston Street, Melbourne, Victoria 3010, Australia
| | - R Luc
- Restorative Section, Melbourne Dental School, Melbourne University, 720 Swanston Street, Melbourne, Victoria 3010, Australia
| | - D Lung
- Restorative Section, Melbourne Dental School, Melbourne University, 720 Swanston Street, Melbourne, Victoria 3010, Australia
| | - A Naseem
- Restorative Section, Melbourne Dental School, Melbourne University, 720 Swanston Street, Melbourne, Victoria 3010, Australia
| | - J Abduo
- Restorative Section, Melbourne Dental School, Melbourne University, 720 Swanston Street, Melbourne, Victoria 3010, Australia
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Finn C, Mackey T. GROWTH, YIELD, AND FRUIT QUALITY OF 10 LINGONBERRY (VACCINIUM VITIS-IDAEA) CULTIVARS AND SELECTIONS IN THE PACIFIC NORTHWEST, USA. ACTA ACUST UNITED AC 2006. [DOI: 10.17660/actahortic.2006.715.42] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Calabro KS, Bright KA, Cole FL, Mackey T, Lindenberg J, Grimm A. Child care work. Organizational culture and health and safety. AAOHN J 2000; 48:480-6. [PMID: 11760258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/23/2023]
Abstract
A nonrandom sample of child care workers was surveyed to assess whether child care work represented an "at risk" health and safety culture and to measure the organizational dimensions contributing to the health and safety culture. The child care workers in Houston, Texas, were surveyed by mail, using an instrument developed by the research team. The sample population represented 34 child care centers (n = 240 respondents). The analysis yielded five factors related to determinants of health and safety culture. The participants had a favorable perception of the five health and safety determinants. The participants also reported high levels of injury and illness in their environments, suggesting a less than favorable situation. A culture, work, and health model was useful in examining the relationship between health and safety and organizational culture.
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Affiliation(s)
- K S Calabro
- University of Texas-Houston Health Science Center, Houston, TX, USA
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Vincent D, Mackey T. Cost analysis: a tool for measuring the value of nurse practitioner practice. Nurse Pract Forum 2000; 11:149-53. [PMID: 11220056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
Abstract
The survival of nurse-managed centers and their ability to provide practice opportunities for advanced practice nurses depends on combining sound business practices and active financial management with clinical excellence. Using cost analysis methodologies, this study examined the operational costs of 2 academic-based nursing centers and analyzed the practices that resulted in profitability for 1 and questionable survival for the other.
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Affiliation(s)
- D Vincent
- University of Colorado School of Nursing, 4200 East Ninth Ave, Box C288, Denver, CO 80262, USA
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Cole FL, Mackey T, Lindenberg J. Quality improvement: psychometric evaluation of patient satisfaction with nurse practitioner care instrument. J Am Acad Nurse Pract 1999; 11:471-5. [PMID: 11000761 DOI: 10.1111/j.1745-7599.1999.tb01043.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- F L Cole
- University of Texas Health Services, School of Nursing, Houston 77030, USA.
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Vincent D, Mackey T, Pohl J, Hirth R, Oakley D. A tale of two nursing centers: a cautionary study of profitability. Nurs Econ 1999; 17:257-62. [PMID: 10711174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/15/2023]
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Abstract
Academic nursing centers, or nurse-managed clinics, are relatively new health care delivery systems. Little information exists as to the demographic characteristics of individuals who use academic nursing centers for health care. Moreover, little is found in the literature about the types of conditions diagnosed and the procedures and tests performed at academic nursing centers. Based on one academic nursing center, this project showed that 3,263 persons received care during an 8-month period. The types of conditions diagnosed and the demographic characteristics of individuals cared for are described. The procedures and diagnostic tests performed are identified. These data have important implications for marketing, predicting resources, and meeting the educational component of the academic nursing center.
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Affiliation(s)
- F L Cole
- University of Texas-Houston Health Services 77030, USA
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Adams J, Mackey T, Lindenberg J, Baden T. Primary care at the worksite: the use of health risk appraisal in a nursing center. AAOHN J 1995; 43:17-22. [PMID: 7695803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
1. The worksite is an emerging and appropriate setting for nurse practitioner provided primary care services. 2. Health risk appraisal has been identified in the literature and in employment settings as a valuable component of a worksite health program. 3. Nurse practitioners can use health risk appraisal, in combination with physical assessment, to target needs of those at high risk for certain health problems and to determine appropriate wellness oriented education and counseling. 4. Further research is needed to determine motivating factors for employees to make changes in high risk behaviors once they are identified through health risk appraisal.
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Mackey T, Adams J. The use of health risk appraisal in a nursing center: costs and benefits. NLN Publ 1994:253-65. [PMID: 7596802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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Abstract
The responsiveness of cultured major pelvic ganglion (MPG) neurons, isolated from adult rats, to nerve growth factor (NGF), basic fibroblastic growth factor (bFGF) and ciliary neuronotrophic factor (CNTF) was tested using in vitro survival assay. MPG neurons respond to NGF with increased survival (+35 +/- 13.3%, mean +/- S.E.), a response completely blocked by antibodies specific to NGF. bFGF (+85 +/- 9.6%) and CNTF (+10.5 +/- 0.5%) also augment survival of MPG neurons in vitro. The effect of bFGF was partially blocked by bFGF antibody. Anti-NGF antibody reduced neuronal survival by 25 +/- 4.1% in conditioned medium from cultures of bladder smooth muscle, suggesting bladder produces NGF. Combining antibodies against NGF and bFGF reduced survival by 19 +/- 0.5% in medium supplemented with bladder extracts, suggesting the extracts contain neurotrophic activity in addition to NGF. These results support the hypothesis that neurons regulating bladder function respond to NGF and other growth factors. Therefore, previously documented changes in bladder neurotrophic factors following hypertrophy, inflammation and injury may elicit growth or change in the autonomic nervous system.
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Affiliation(s)
- J B Tuttle
- Department of Urology, University of Virginia Health Sciences Center, Charlottesville 22908
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Abstract
By using cell morphology, arginine dihydrolase, and gas production in de Man, Sharp, Rogosa broth, 122 isolates of vancomycin-resistant lactic bacteria from humans were assigned to five profiles, allowing us to distinguish Pediococcus, homofermentative and heterofermentative Lactobacillus, and Leuconostoc species. The absence of L-(+)-lactic acid, as detected spectrophotometrically, was confirmatory for Leuconostoc species. API 50 CHL panels were useful for the identification of Lactobacillus species.
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Affiliation(s)
- T Mackey
- Microbiology Unit, UCL 5490, University of Louvain, Brussels, Belgium
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Delmée M, Mackey T, Hamitou A. Evaluation of a new commercial Clostridium difficile toxin A enzyme immunoassay using diarrhoeal stools. Eur J Clin Microbiol Infect Dis 1992; 11:246-9. [PMID: 1597202 DOI: 10.1007/bf02098089] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
A new, commercially available enzyme immunoassay for the detection of toxin A in stool specimens, the Premier Clostridium difficile Toxin A test (Meridian Diagnostics), was evaluated using 228 diarrhoeal stool specimens. Using a cytotoxin assay on HeLa cells as the reference method, this new test resulted in a sensitivity of 88% and a specificity of 95%. Using the presence or absence of a toxigenic strain in the stools as the reference method, the sensitivity was similar to that of the cytotoxin assay (71.7+ versus 70.5%) and the overall correlation was even better (89.4% versus 82%). The Premier Clostridium difficile Toxin A assay is rapid and easy to perform and is an excellent alternative to the usual toxin B assay.
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Affiliation(s)
- M Delmée
- University of Louvain, Microbiology Unit, Brussels, Belgium
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Abstract
Of 63 sexual assault victims who were a mean 7.9 years postevent, almost two thirds (60%, n = 38) demonstrated some degree of depression. Over half (56%, n = 35) the sample also reported a history of childhood sexual abuse. Three factors had a significant positive association with higher levels of depression: nondisclosure of the assault to significant others due to concerns about stigma; the presence of children living with the victim; and a civil lawsuit pending. One factor, currently being sexually active, had a significant negative association with depression. Results are discussed from the perspective of depression, a common pathway by which unresolved sexual trauma is expressed.
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Affiliation(s)
- T Mackey
- Department of Psychiatric-Mental Health Nursing, University of Michigan, Ann Arbor 48109-0482
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Blake RL, Roberts C, Mackey T, Hosokawa M. Social support and utilization of medical care. J Fam Pract 1980; 11:810-812. [PMID: 7430983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
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