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Al Sadi K, Balachandran W. Leveraging a 7-Layer Long Short-Term Memory Model for Early Detection and Prevention of Diabetes in Oman: An Innovative Approach. Bioengineering (Basel) 2024; 11:379. [PMID: 38671800 PMCID: PMC11048439 DOI: 10.3390/bioengineering11040379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 03/28/2024] [Accepted: 04/12/2024] [Indexed: 04/28/2024] Open
Abstract
This study develops a 7-layer Long Short-Term Memory (LSTM) model to enhance early diabetes detection in Oman, aligning with the theme of 'Artificial Intelligence in Healthcare'. The model focuses on addressing the increasing prevalence of Type 2 diabetes, projected to impact 23.8% of Oman's population by 2050. It employs LSTM neural networks to manage factors contributing to this rise, including obesity and genetic predispositions, and aims to bridge the gap in public health awareness and prevention. The model's performance is evaluated through various metrics. It achieves an accuracy of 99.40%, specificity and sensitivity of 100% for positive cases, a recall of 99.34% for negative cases, an F1 score of 96.24%, and an AUC score of 94.51%. These metrics indicate the model's capability in diabetes detection. The implementation of this LSTM model in Oman's healthcare system is proposed to enhance early detection and prevention of diabetes. This approach reflects an application of AI in addressing a significant health concern, with potential implications for similar healthcare challenges relating to globally diagnostic capabilities, representing a significant leap forward in healthcare technology in Oman.
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Affiliation(s)
- Khoula Al Sadi
- Department of Electronic and Electrical Engineering Research, Brunel University London, Uxbridge UB8 3PH, UK;
- Information Technology Department, University of Technology and Applied Sciences-Al-Mussanha, P.O. Box 13, Muladdah 314, Oman
| | - Wamadeva Balachandran
- Department of Electronic and Electrical Engineering Research, Brunel University London, Uxbridge UB8 3PH, UK;
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Cretu I, Tindale A, Abbod M, Balachandran W, Khir AW, Meng H. A comparison of different methods to maximise signal extraction when using central venous pressure to optimise atrioventricular delay after cardiac surgery. Int J Cardiol Heart Vasc 2024; 51:101382. [PMID: 38496260 PMCID: PMC10944103 DOI: 10.1016/j.ijcha.2024.101382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2023] [Revised: 03/02/2024] [Accepted: 03/05/2024] [Indexed: 03/19/2024]
Abstract
Objective Our group has shown that central venous pressure (CVP) can optimise atrioventricular (AV) delay in temporary pacing (TP) after cardiac surgery. However, the signal-to-noise ratio (SNR) is influenced both by the methods used to mitigate the pressure effects of respiration and the number of heartbeats analysed. This paper systematically studies the effect of different analysis methods on SNR to maximise the accuracy of this technique. Methods We optimised AV delay in 16 patients with TP after cardiac surgery. Transitioning rapidly and repeatedly from a reference AV delay to different tested AV delays, we measured pressure differences before and after each transition. We analysed the resultant signals in different ways with the aim of maximising the SNR: (1) adjusting averaging window location (around versus after transition), (2) modifying window length (heartbeats analysed), and (3) applying different signal filtering methods to correct respiratory artefact. Results (1) The SNR was 27 % higher for averaging windows around the transition versus post-transition windows. (2) The optimal window length for CVP analysis was two respiratory cycle lengths versus one respiratory cycle length for optimising SNR for arterial blood pressure (ABP) signals. (3) Filtering with discrete wavelet transform improved SNR by 62 % for CVP measurements. When applying the optimal window length and filtering techniques, the correlation between ABP and CVP peak optima exceeded that of a single cycle length (R = 0.71 vs. R = 0.50, p < 0.001). Conclusion We demonstrated that utilising a specific set of techniques maximises the signal-to-noise ratio and hence the utility of this technique.
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Affiliation(s)
| | - Alexander Tindale
- Royal Brompton and Harefield Hospitals, Guy’s and St Thomas’ NHS Foundation Trust, London, UK
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Al Sadi K, Balachandran W. Revolutionizing Early Disease Detection: A High-Accuracy 4D CNN Model for Type 2 Diabetes Screening in Oman. Bioengineering (Basel) 2023; 10:1420. [PMID: 38136011 PMCID: PMC10740649 DOI: 10.3390/bioengineering10121420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 11/25/2023] [Accepted: 12/11/2023] [Indexed: 12/24/2023] Open
Abstract
The surge of diabetes poses a significant global health challenge, particularly in Oman and the Middle East. Early detection of diabetes is crucial for proactive intervention and improved patient outcomes. This research leverages the power of machine learning, specifically Convolutional Neural Networks (CNNs), to develop an innovative 4D CNN model dedicated to early diabetes prediction. A region-specific dataset from Oman is utilized to enhance health outcomes for individuals at risk of developing diabetes. The proposed model showcases remarkable accuracy, achieving an average accuracy of 98.49% to 99.17% across various epochs. Additionally, it demonstrates excellent F1 scores, recall, and sensitivity, highlighting its ability to identify true positive cases. The findings contribute to the ongoing effort to combat diabetes and pave the way for future research in using deep learning for early disease detection and proactive healthcare.
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Affiliation(s)
- Khoula Al Sadi
- Department of Electronic and Electrical Engineering Research, Brunel University London, Uxbridge UB8 3PH, UK;
- Information Technology Department, University of Technology and Applied Sciences-Al-Mussanha, P.O. Box 13, Muladdah 314, Sultanate of Oman
| | - Wamadeva Balachandran
- Department of Electronic and Electrical Engineering Research, Brunel University London, Uxbridge UB8 3PH, UK;
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Ahmad H, Rasekh M, Manivannan N, Balachandran W. Liquid resistivity of pharmaceutical propellants using novel resistivity cell. Sci Rep 2023; 13:19122. [PMID: 37926726 PMCID: PMC10625955 DOI: 10.1038/s41598-023-45253-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 10/17/2023] [Indexed: 11/07/2023] Open
Abstract
Metered-dose inhalers employ propellants to produce pharmaceutical aerosols for treating respiratory conditions like asthma. In the liquid phase, the DC volume resistivity of pharmaceutical propellants, including R134a, R152a, and R227ea, was studied at saturation pressures and room temperature (not vapour phase). These measurements are essential for industries like refrigerants. Aerosols from metered dose inhalers (MDIs) with these propellants become electrically charged, affecting medicament deposition in lung. The resistivity was measured using a novel concentric cylinder-type capacitance cell designed in-house. The resistivity for the propellants (R134a, R152a, and R227ea) was found to be 3.02 × 1010 Ωm, 2.37 × 109 Ωm and 1.31 × 1010 Ωm, respectively. The electrical resistivity data obtained was found to be at least two orders of magnitude higher than the limited data available in the literature. Challenges in the resistivity cell's development and performance are discussed, with a focus on various propellants and their mixtures with ethanol and moisture concentrations. The resistivity of propellant mixtures containing moisture concentrations ranging from 5 to 500 ppm and ethanol concentrations ranging between 1000 and 125,000 ppm was determined. The resistivity was tested across 10-min and 1-h periods and was performed in accordance with the contemporary IEC 60247 standard.
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Affiliation(s)
- Hussein Ahmad
- College of Engineering, Design and Physical Sciences, Brunel University London, Uxbridge, UB8 3PH, UK
| | - Manoochehr Rasekh
- College of Engineering, Design and Physical Sciences, Brunel University London, Uxbridge, UB8 3PH, UK.
| | - Nadarajah Manivannan
- College of Engineering, Design and Physical Sciences, Brunel University London, Uxbridge, UB8 3PH, UK
| | - Wamadeva Balachandran
- College of Engineering, Design and Physical Sciences, Brunel University London, Uxbridge, UB8 3PH, UK.
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5
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Poirier AC, Riaño Moreno RD, Takaindisa L, Carpenter J, Mehat JW, Haddon A, Rohaim MA, Williams C, Burkhart P, Conlon C, Wilson M, McClumpha M, Stedman A, Cordoni G, Branavan M, Tharmakulasingam M, Chaudhry NS, Locker N, Fernando A, Balachandran W, Bullen M, Collins N, Rimer D, Horton DL, Munir M, La Ragione RM. Corrigendum: VIDIIA Hunter: a low-cost, smartphone connected, artificial intelligence-assisted COVID-19 rapid diagnostic platform approved for medical use in the UK. Front Mol Biosci 2023; 10:1325104. [PMID: 38028554 PMCID: PMC10646178 DOI: 10.3389/fmolb.2023.1325104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Accepted: 10/24/2023] [Indexed: 12/01/2023] Open
Abstract
[This corrects the article DOI: 10.3389/fmolb.2023.1144001.].
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Affiliation(s)
- Aurore C. Poirier
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
| | | | - Leona Takaindisa
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
| | - Jessie Carpenter
- VIDIIA Ltd., Surrey Technology Centre, Guildford, United Kingdom
| | - Jai W. Mehat
- Department of Microbial Sciences, School of Biosciences, University of Surrey, Guildford, United Kingdom
| | - Abi Haddon
- Berkshire and Surrey Pathology Services, Molecular Diagnostics, Royal Surrey County Hospital, Guildford, United Kingdom
| | - Mohammed A. Rohaim
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster, United Kingdom
| | - Craig Williams
- The Royal Lancaster Infirmary, University Hospitals of Morecambe Bay NHS Foundation Trust, Kendal, United Kingdom
| | - Peter Burkhart
- The Royal Lancaster Infirmary, University Hospitals of Morecambe Bay NHS Foundation Trust, Kendal, United Kingdom
| | - Chris Conlon
- GB Electronics (UK) Ltd., Worthing, United Kingdom
| | | | | | - Anna Stedman
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
| | - Guido Cordoni
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
| | - Manoharanehru Branavan
- College of Engineering, Design and Physical Sciences, Brunel University London, Uxbridge, United Kingdom
| | | | - Nouman S. Chaudhry
- Centre for Vision, Speech and Signal Processing, University of Surrey, Guildford, United Kingdom
| | - Nicolas Locker
- Department of Microbial Sciences, School of Biosciences, University of Surrey, Guildford, United Kingdom
| | - Anil Fernando
- Centre for Vision, Speech and Signal Processing, University of Surrey, Guildford, United Kingdom
| | - Wamadeva Balachandran
- College of Engineering, Design and Physical Sciences, Brunel University London, Uxbridge, United Kingdom
| | - Mark Bullen
- GB Electronics (UK) Ltd., Worthing, United Kingdom
| | - Nadine Collins
- Berkshire and Surrey Pathology Services, Molecular Diagnostics, Royal Surrey County Hospital, Guildford, United Kingdom
| | - David Rimer
- VIDIIA Ltd., Surrey Technology Centre, Guildford, United Kingdom
| | - Daniel L. Horton
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
| | - Muhammad Munir
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster, United Kingdom
| | - Roberto M. La Ragione
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
- Department of Microbial Sciences, School of Biosciences, University of Surrey, Guildford, United Kingdom
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Poirier AC, Riaño Moreno RD, Takaindisa L, Carpenter J, Mehat JW, Haddon A, Rohaim MA, Williams C, Burkhart P, Conlon C, Wilson M, McClumpha M, Stedman A, Cordoni G, Branavan M, Tharmakulasingam M, Chaudhry NS, Locker N, Fernando A, Balachandran W, Bullen M, Collins N, Rimer D, Horton DL, Munir M, La Ragione RM. VIDIIA Hunter diagnostic platform: a low-cost, smartphone connected, artificial intelligence-assisted COVID-19 rapid diagnostics approved for medical use in the UK. Front Mol Biosci 2023; 10:1144001. [PMID: 37842636 PMCID: PMC10572354 DOI: 10.3389/fmolb.2023.1144001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 09/12/2023] [Indexed: 10/17/2023] Open
Abstract
Introduction: Accurate and rapid diagnostics paired with effective tracking and tracing systems are key to halting the spread of infectious diseases, limiting the emergence of new variants and to monitor vaccine efficacy. The current gold standard test (RT-qPCR) for COVID-19 is highly accurate and sensitive, but is time-consuming, and requires expensive specialised, lab-based equipment. Methods: Herein, we report on the development of a SARS-CoV-2 (COVID-19) rapid and inexpensive diagnostic platform that relies on a reverse-transcription loop-mediated isothermal amplification (RT-LAMP) assay and a portable smart diagnostic device. Automated image acquisition and an Artificial Intelligence (AI) deep learning model embedded in the Virus Hunter 6 (VH6) device allow to remove any subjectivity in the interpretation of results. The VH6 device is also linked to a smartphone companion application that registers patients for swab collection and manages the entire process, thus ensuring tests are traced and data securely stored. Results: Our designed AI-implemented diagnostic platform recognises the nucleocapsid protein gene of SARS-CoV-2 with high analytical sensitivity and specificity. A total of 752 NHS patient samples, 367 confirmed positives for coronavirus disease (COVID-19) and 385 negatives, were used for the development and validation of the test and the AI-assisted platform. The smart diagnostic platform was then used to test 150 positive clinical samples covering a dynamic range of clinically meaningful viral loads and 250 negative samples. When compared to RT-qPCR, our AI-assisted diagnostics platform was shown to be reliable, highly specific (100%) and sensitive (98-100% depending on viral load) with a limit of detection of 1.4 copies of RNA per µL in 30 min. Using this data, our CE-IVD and MHRA approved test and associated diagnostic platform has been approved for medical use in the United Kingdom under the UK Health Security Agency's Medical Devices (Coronavirus Test Device Approvals, CTDA) Regulations 2022. Laboratory and in-silico data presented here also indicates that the VIDIIA diagnostic platform is able to detect the main variants of concern in the United Kingdom (September 2023). Discussion: This system could provide an efficient, time and cost-effective platform to diagnose SARS-CoV-2 and other infectious diseases in resource-limited settings.
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Affiliation(s)
- Aurore C. Poirier
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
| | | | - Leona Takaindisa
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
| | - Jessie Carpenter
- VIDIIA Ltd., Surrey Technology Centre, Guildford, United Kingdom
| | - Jai W. Mehat
- Department of Microbial Sciences, School of Biosciences, University of Surrey, Guildford, United Kingdom
| | - Abi Haddon
- Berkshire and Surrey Pathology Services, Molecular Diagnostics, Royal Surrey County Hospital, Guildford, United Kingdom
| | - Mohammed A. Rohaim
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster, United Kingdom
| | - Craig Williams
- The Royal Lancaster Infirmary, University Hospitals of Morecambe Bay NHS Foundation Trust, Kendal, United Kingdom
| | - Peter Burkhart
- The Royal Lancaster Infirmary, University Hospitals of Morecambe Bay NHS Foundation Trust, Kendal, United Kingdom
| | - Chris Conlon
- GB Electronics (UK) Ltd, Worthing, United Kingdom
| | | | | | - Anna Stedman
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
| | - Guido Cordoni
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
| | - Manoharanehru Branavan
- College of Engineering, Design and Physical Sciences, Brunel University London, Uxbridge, United Kingdom
| | | | - Nouman S. Chaudhry
- Centre for Vision, Speech and Signal Processing, University of Surrey, Guildford, United Kingdom
| | - Nicolas Locker
- Department of Microbial Sciences, School of Biosciences, University of Surrey, Guildford, United Kingdom
| | - Anil Fernando
- Centre for Vision, Speech and Signal Processing, University of Surrey, Guildford, United Kingdom
| | - Wamadeva Balachandran
- College of Engineering, Design and Physical Sciences, Brunel University London, Uxbridge, United Kingdom
| | - Mark Bullen
- GB Electronics (UK) Ltd, Worthing, United Kingdom
| | - Nadine Collins
- Berkshire and Surrey Pathology Services, Molecular Diagnostics, Royal Surrey County Hospital, Guildford, United Kingdom
| | - David Rimer
- VIDIIA Ltd., Surrey Technology Centre, Guildford, United Kingdom
| | - Daniel L. Horton
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
| | - Muhammad Munir
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster, United Kingdom
| | - Roberto M. La Ragione
- Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford, United Kingdom
- Department of Microbial Sciences, School of Biosciences, University of Surrey, Guildford, United Kingdom
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7
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Teyeb A, Salimi M, El Masri E, Balachandran W, Gan TH. Analytical Simulation of the Microbubble Collapsing in a Welding Fusion Pool. Materials (Basel) 2023; 16:410. [PMID: 36614749 PMCID: PMC9822500 DOI: 10.3390/ma16010410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 12/27/2022] [Accepted: 12/28/2022] [Indexed: 06/17/2023]
Abstract
This paper explains the use of remote ultrasound vibration at the optimum position and frequencies to vibrate plates under welding, with the aim of initiating cavitation in the molten pool area. It has been shown in the literature that ultrasound cavitation changes microstructure morphology and refines the grain of the weld. In practice, the plates are excited through narrow-band high-power ultrasound transducers (HPUTs). Therefore, a theoretical investigation is carried out to identify the plate-mode shapes due to the ultrasound vibration aligned with the frequency bandwidth of HPUTs available in the marketplace. The effect of exciting the plate at different locations and frequencies is studied to find the optimum position and frequencies to achieve the maximum pressure at the area of the fusion zone. It was shown that applying the excitation from the side of the plate produces an order of 103 higher vibration displacement amplitude, compared with excitation from the corner. The forced vibration of cavitation and bursting time are studied to identify vibration amplitude and the time required to generate and implode cavities, hence specifying the vibration-assisted welding time. Thus, the proposed computational platform enables efficient multiparametric analysis of cavitation, initiated by remote ultrasound excitation, in the molten pool under welding.
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Affiliation(s)
- Ahmed Teyeb
- Brunel Innovation Centre, Brunel University London, Uxbridge UB8 3PH, UK
| | - Mohamad Salimi
- Brunel Innovation Centre, Brunel University London, Uxbridge UB8 3PH, UK
| | - Evelyne El Masri
- Brunel Innovation Centre, Brunel University London, Uxbridge UB8 3PH, UK
| | - Wamadeva Balachandran
- Department of Electronic and Electrical Engineering, Brunel University London, Uxbridge UB8 3PH, UK
| | - Tat-Hean Gan
- Brunel Innovation Centre, Brunel University London, Uxbridge UB8 3PH, UK
- TWI Ltd., Granta Park, Great Abignton, Cambridge CB 21 6AL, UK
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8
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Cretu I, Tindale A, Abbod M, Khir AW, Mason MJ, Balachandran W, Meng H. Techniques to aid prediction of pacing dependence at 30 days in patients requiring pacemaker implantation after cardiac surgery. Annu Int Conf IEEE Eng Med Biol Soc 2022; 2022:2647-2650. [PMID: 36085840 DOI: 10.1109/embc48229.2022.9871616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Permanent pacemaker (PPM) implantation occurs in up to 5 % of patients after cardiac surgery but there is little consensus on how long to wait between surgery and PPM insertion. Predicting the likelihood of a patient being pacing dependent 30 days after implant can aid with this timing decision and avoid unnecessary observation time waiting for intrinsic conduction to recover. In this paper, we introduce a new approach for the prediction of PPM dependency at 30 days after implant in patients who have undergone recent cardiac surgery. The aim is to create an automatic detection model able to support clinicians in the decision-making process. We first applied Synthetic Minority Oversampling Technique (SMOTE) and Bayesian Networks (BN) to the dataset, to balance the inherently imbalanced data and create additional synthetic data respectively. The six resultant datasets were then used to train four different classifiers to predict pacing dependence at 30 days, all using the same testing set. The Bagged Trees classifier achieved the best results, reaching an area under the receiver operating curve (AUC) of 90 % in the train phase, and 83 % in the test phase. The overall classification performance was clearly enhanced when using SMOTE and synthetic data created with BN to create a combined and balanced dataset. This technique could be of great use in answering clinical questions where the original dataset is imbalanced.
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9
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Rohaim MA, Clayton E, Sahin I, Vilela J, Khalifa ME, Al-Natour MQ, Bayoumi M, Poirier AC, Branavan M, Tharmakulasingam M, Chaudhry NS, Sodi R, Brown A, Burkhart P, Hacking W, Botham J, Boyce J, Wilkinson H, Williams C, Whittingham-Dowd J, Shaw E, Hodges M, Butler L, Bates MD, La Ragione R, Balachandran W, Fernando A, Munir M. Artificial Intelligence-Assisted Loop Mediated Isothermal Amplification (AI-LAMP) for Rapid Detection of SARS-CoV-2. Viruses 2020; 12:v12090972. [PMID: 32883050 PMCID: PMC7552048 DOI: 10.3390/v12090972] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 08/22/2020] [Accepted: 08/24/2020] [Indexed: 01/13/2023] Open
Abstract
Until vaccines and effective therapeutics become available, the practical solution to transit safely out of the current coronavirus disease 19 (CoVID-19) lockdown may include the implementation of an effective testing, tracing and tracking system. However, this requires a reliable and clinically validated diagnostic platform for the sensitive and specific identification of SARS-CoV-2. Here, we report on the development of a de novo, high-resolution and comparative genomics guided reverse-transcribed loop-mediated isothermal amplification (LAMP) assay. To further enhance the assay performance and to remove any subjectivity associated with operator interpretation of results, we engineered a novel hand-held smart diagnostic device. The robust diagnostic device was further furnished with automated image acquisition and processing algorithms and the collated data was processed through artificial intelligence (AI) pipelines to further reduce the assay run time and the subjectivity of the colorimetric LAMP detection. This advanced AI algorithm-implemented LAMP (ai-LAMP) assay, targeting the RNA-dependent RNA polymerase gene, showed high analytical sensitivity and specificity for SARS-CoV-2. A total of ~200 coronavirus disease (CoVID-19)-suspected NHS patient samples were tested using the platform and it was shown to be reliable, highly specific and significantly more sensitive than the current gold standard qRT-PCR. Therefore, this system could provide an efficient and cost-effective platform to detect SARS-CoV-2 in resource-limited laboratories.
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Affiliation(s)
- Mohammed A. Rohaim
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Emily Clayton
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Irem Sahin
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Julianne Vilela
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Manar E. Khalifa
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Mohammad Q. Al-Natour
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Mahmoud Bayoumi
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Aurore C. Poirier
- Department of Pathology and Infectious Diseases, School of Veterinary Medicine, University of Surrey, Guildford GU2 7AL, UK; (A.C.P.); (R.L.R.)
| | - Manoharanehru Branavan
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK; (M.B.); (W.B.)
| | - Mukunthan Tharmakulasingam
- Centre for Vision, Speech and Signal Processing, University of Surrey, Guildford GU2 7XH, UK; (M.T.); (N.S.C.); (A.F.)
| | - Nouman S. Chaudhry
- Centre for Vision, Speech and Signal Processing, University of Surrey, Guildford GU2 7XH, UK; (M.T.); (N.S.C.); (A.F.)
| | - Ravinder Sodi
- Department of Biochemistry, Poole & Bournemouth Hospitals NHS Trust, Longfleet Road, Poole BH15 2JB, UK;
| | - Amy Brown
- The Royal Lancaster Infirmary, University Hospitals of Morecambe Bay NHS, Foundation Trust, Kendal LA9 7RG, UK; (A.B.); (P.B.); (W.H.); (J.B.); (J.B.); (H.W.); (C.W.)
| | - Peter Burkhart
- The Royal Lancaster Infirmary, University Hospitals of Morecambe Bay NHS, Foundation Trust, Kendal LA9 7RG, UK; (A.B.); (P.B.); (W.H.); (J.B.); (J.B.); (H.W.); (C.W.)
| | - Wendy Hacking
- The Royal Lancaster Infirmary, University Hospitals of Morecambe Bay NHS, Foundation Trust, Kendal LA9 7RG, UK; (A.B.); (P.B.); (W.H.); (J.B.); (J.B.); (H.W.); (C.W.)
| | - Judy Botham
- The Royal Lancaster Infirmary, University Hospitals of Morecambe Bay NHS, Foundation Trust, Kendal LA9 7RG, UK; (A.B.); (P.B.); (W.H.); (J.B.); (J.B.); (H.W.); (C.W.)
| | - Joe Boyce
- The Royal Lancaster Infirmary, University Hospitals of Morecambe Bay NHS, Foundation Trust, Kendal LA9 7RG, UK; (A.B.); (P.B.); (W.H.); (J.B.); (J.B.); (H.W.); (C.W.)
| | - Hayley Wilkinson
- The Royal Lancaster Infirmary, University Hospitals of Morecambe Bay NHS, Foundation Trust, Kendal LA9 7RG, UK; (A.B.); (P.B.); (W.H.); (J.B.); (J.B.); (H.W.); (C.W.)
| | - Craig Williams
- The Royal Lancaster Infirmary, University Hospitals of Morecambe Bay NHS, Foundation Trust, Kendal LA9 7RG, UK; (A.B.); (P.B.); (W.H.); (J.B.); (J.B.); (H.W.); (C.W.)
| | - Jayde Whittingham-Dowd
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Elisabeth Shaw
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Matt Hodges
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Lisa Butler
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Michelle D. Bates
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
| | - Roberto La Ragione
- Department of Pathology and Infectious Diseases, School of Veterinary Medicine, University of Surrey, Guildford GU2 7AL, UK; (A.C.P.); (R.L.R.)
| | - Wamadeva Balachandran
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK; (M.B.); (W.B.)
| | - Anil Fernando
- Centre for Vision, Speech and Signal Processing, University of Surrey, Guildford GU2 7XH, UK; (M.T.); (N.S.C.); (A.F.)
| | - Muhammad Munir
- Division of Biomedical and Life Sciences, Faculty of Health and Medicine, The Lancaster University, Lancaster LA1 4YW, UK; (M.A.R.); (E.C.); (I.S.); (J.V.); (M.E.K.); (M.Q.A.-N.); (M.B.); (J.W.-D.); (E.S.); (M.H.); (L.B.); (M.D.B.)
- Correspondence:
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10
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Dhutti A, Tumin SA, Balachandran W, Kanfoud J, Gan TH. Development of Ultrasonic Guided Wave Transducer for Monitoring of High Temperature Pipelines. Sensors (Basel) 2019; 19:s19245443. [PMID: 31835544 PMCID: PMC6960565 DOI: 10.3390/s19245443] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2019] [Revised: 12/05/2019] [Accepted: 12/08/2019] [Indexed: 11/16/2022]
Abstract
High-temperature (HT) ultrasonic transducers are of increasing interest for structural health monitoring (SHM) of structures operating in harsh environments. This article focuses on the development of an HT piezoelectric wafer active sensor (HT-PWAS) for SHM of HT pipelines using ultrasonic guided waves. The PWAS was fabricated using Y-cut gallium phosphate (GaPO4) to produce a torsional guided wave mode on pipes operating at temperatures up to 600 °C. A number of confidence-building tests on the PWAS were carried out. HT electromechanical impedance (EMI) spectroscopy was performed to characterise piezoelectric properties at elevated temperatures and over long periods of time (>1000 h). Laser Doppler vibrometry (LDV) was used to verify the modes of vibration. A finite element model of GaPO4 PWAS was developed to model the electromechanical behaviour of the PWAS and the effect of increasing temperatures, and it was validated using EMI and LDV experimental data. This study demonstrates the application of GaPO4 for guided-wave SHM of pipelines and presents a model that can be used to evaluate different transducer designs for HT applications.
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Affiliation(s)
- Anurag Dhutti
- Brunel University London, Kingston Ln, Uxbridge, Middlesex UB8 3PH, UK
- Correspondence: (A.D.); (T.-H.G.); Tel.: +44-7938-16-3560 (A.D.); +44-12-2389-9000 (T.-H.G.)
| | | | | | - Jamil Kanfoud
- Brunel University London, Kingston Ln, Uxbridge, Middlesex UB8 3PH, UK
| | - Tat-Hean Gan
- Brunel University London, Kingston Ln, Uxbridge, Middlesex UB8 3PH, UK
- TWI Lt, Granta Park, Cambridge CB21 6AL, UK
- Correspondence: (A.D.); (T.-H.G.); Tel.: +44-7938-16-3560 (A.D.); +44-12-2389-9000 (T.-H.G.)
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11
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Ereku LT, Mackay RE, Craw P, Naveenathayalan A, Stead T, Branavan M, Balachandran W. RPA using a multiplexed cartridge for low cost point of care diagnostics in the field. Anal Biochem 2018; 547:84-88. [PMID: 29447855 PMCID: PMC5884738 DOI: 10.1016/j.ab.2018.02.010] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2017] [Revised: 01/12/2018] [Accepted: 02/09/2018] [Indexed: 10/26/2022]
Abstract
A point of care device utilising Lab-on-a-Chip technologies that is applicable for biological pathogens was designed, fabricated and tested showing sample in to answer out capabilities. The purpose of the design was to develop a cartridge with the capability to perform nucleic acid extraction and purification from a sample using a chitosan membrane at an acidic pH. Waste was stored within the cartridge with the use of sodium polyacrylate to solidify or gelate the sample in a single chamber. Nucleic acid elution was conducted using the RPA amplification reagents (alkaline pH). Passive valves were used to regulate the fluid flow and a multiplexer was designed to distribute the fluid into six microchambers for amplification reactions. Cartridges were produced using soft lithography of silicone from 3D printed moulds, bonded to glass substrates. The isothermal technique, RPA is employed for amplification. This paper shows the results from two separate experiments: the first using the RPA control nucleic acid, the second showing successful amplification from Chlamydia Trachomatis. Endpoint analysis conducted for the RPA analysis was gel electrophoresis that showed 143 base pair DNA was amplified successfully for positive samples whilst negative samples did not show amplification. End point analysis for Chlamydia Trachomatis samples was fluorescence detection that showed successful detection of 1 copy/μL and 10 copies/μL spiked in a MES buffer.
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Affiliation(s)
- Luck Tosan Ereku
- Centre for Electronic Systems Research, Electronic and Computer Engineering, CEDPS, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK
| | - Ruth E Mackay
- Mechanical, Aerospace and Civil Engineering, CEDPS, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK.
| | - Pascal Craw
- Oceans and Atmosphere Flagship, Commonwealth Science and Industrial Research Organisation (CSIRO), Hobart, Tasmania 7001, Australia
| | - Angel Naveenathayalan
- Mechanical, Aerospace and Civil Engineering, CEDPS, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK
| | - Thomas Stead
- Centre for Electronic Systems Research, Electronic and Computer Engineering, CEDPS, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK
| | - Manorharanehru Branavan
- Centre for Electronic Systems Research, Electronic and Computer Engineering, CEDPS, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK
| | - Wamadeva Balachandran
- Centre for Electronic Systems Research, Electronic and Computer Engineering, CEDPS, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK
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12
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Garaj V, Jirawimut R, Ptasinski P, Cecelja F, Balachandran W. A system for remote sighted guidance of visually impaired pedestrians. British Journal of Visual Impairment 2016. [DOI: 10.1177/026461960302100204] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Sighted guidance is arguably the most efficient method for aiding visually impaired pedestrians in mobility. A sighted guide's verbal instructions compensate comprehensively for the insufficiency of visual input in navigation. Moreover, the companionship entails sharing of responsibilities and thus increases the blind traveller's sense of security during a journey. The disadvantages of the sighted guidance are that a sighted guide may not always be available or their presence may not be desirable because it restricts personal independence. This paper presents a novel system for navigation of visually impaired pedestrians, whereby advanced technologies were combined to allow a visually impaired user to remotely access the sighted guidance service. The user can choose when and for how long to use the system. The remote sighted guidance system is enabled by the integration of a remote vision facility with the Global Positioning System, the Geographic Information System and the third generation telecommunication network. A user trial is also reported in which the contribution of the system to the mobility of a visually impaired pedestrian was assessed. The results obtained lead to the conclusion that the remote sighted guidance is potentially a highly usable mobility aid.
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13
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Branavan M, Mackay RE, Craw P, Naveenathayalan A, Ahern JC, Sivanesan T, Hudson C, Stead T, Kremer J, Garg N, Baker M, Sadiq ST, Balachandran W. Modular development of a prototype point of care molecular diagnostic platform for sexually transmitted infections. Med Eng Phys 2016; 38:741-8. [PMID: 27238759 PMCID: PMC4942561 DOI: 10.1016/j.medengphy.2016.04.022] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2015] [Revised: 04/15/2016] [Accepted: 04/24/2016] [Indexed: 02/04/2023]
Abstract
A low cost, optical, POC molecular diagnostic platform. Sample preparation using a paper membrane. Isothermal amplification using HDA and RPA.
This paper presents the design of a modular point of care test platform that integrates a proprietary sample collection device directly with a microfluidic cartridge. Cell lysis, within the cartridge, is conducted using a chemical method and nucleic acid purification is done on an activated cellulose membrane. The microfluidic device incorporates passive mixing of the lysis-binding buffers and sample using a serpentine channel. Results have shown extraction efficiencies for this new membrane of 69% and 57% compared to the commercial Qiagen extraction method of 85% and 59.4% for 0.1 ng/µL and 100 ng/µL salmon sperm DNA respectively spiked in phosphate buffered solution. Extraction experiments using the serpentine passive mixer cartridges incorporating lysis and nucleic acid purification showed extraction efficiency around 80% of the commercial Qiagen kit. Isothermal amplification was conducted using thermophillic helicase dependant amplification and recombinase polymerase amplification. A low cost benchtop real-time isothermal amplification platform has been developed capable of running six amplifications simultaneously. Results show that the platform is capable of detecting 1.32×106 of sample DNA through thermophillic helicase dependant amplification and 1×105 copy numbers Chlamydia trachomatis genomic DNA within 10 min through recombinase polymerase nucleic acid amplification tests.
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Affiliation(s)
- Manoharanehru Branavan
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK
| | - Ruth E Mackay
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK.
| | - Pascal Craw
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK; Oceans and Atmosphere Flagship, Commonwealth Science and Industrial Research Organisation (CSIRO), Hobart, Tasmania 7001, Australia
| | - Angel Naveenathayalan
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK
| | - Jeremy C Ahern
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK
| | - Tulasi Sivanesan
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK
| | - Chris Hudson
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK
| | - Thomas Stead
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK
| | - Jessica Kremer
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK
| | - Neha Garg
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK
| | - Mark Baker
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK
| | - Syed T Sadiq
- Institute for Infection and Immunity, St George's University of London, Cranmer Terrace, London SW17 0RE, UK
| | - Wamadeva Balachandran
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge, UK
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14
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Kogia M, Gan TH, Balachandran W, Livadas M, Kappatos V, Szabo I, Mohimi A, Round A. High Temperature Shear Horizontal Electromagnetic Acoustic Transducer for Guided Wave Inspection. Sensors (Basel) 2016; 16:s16040582. [PMID: 27110792 PMCID: PMC4851096 DOI: 10.3390/s16040582] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/28/2016] [Revised: 04/18/2016] [Accepted: 04/19/2016] [Indexed: 11/16/2022]
Abstract
Guided Wave Testing (GWT) using novel Electromagnetic Acoustic Transducers (EMATs) is proposed for the inspection of large structures operating at high temperatures. To date, high temperature EMATs have been developed only for thickness measurements and they are not suitable for GWT. A pair of water-cooled EMATs capable of exciting and receiving Shear Horizontal (SH0) waves for GWT with optimal high temperature properties (up to 500 °C) has been developed. Thermal and Computational Fluid Dynamic (CFD) simulations of the EMAT design have been performed and experimentally validated. The optimal thermal EMAT design, material selection and operating conditions were calculated. The EMAT was successfully tested regarding its thermal and GWT performance from ambient temperature to 500 °C.
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Affiliation(s)
- Maria Kogia
- Brunel Innovation Centre (BIC), Brunel University, Cambridge CB21 6AL, UK.
| | - Tat-Hean Gan
- Brunel Innovation Centre (BIC), Brunel University, Cambridge CB21 6AL, UK.
- TWI Ltd., Granta Park, Great Abington, Cambridge CB21 6AL, UK.
| | | | - Makis Livadas
- Brunel Innovation Centre (BIC), Brunel University, Cambridge CB21 6AL, UK.
| | - Vassilios Kappatos
- Brunel Innovation Centre (BIC), Brunel University, Cambridge CB21 6AL, UK.
| | - Istvan Szabo
- Brunel Innovation Centre (BIC), Brunel University, Cambridge CB21 6AL, UK.
| | - Abbas Mohimi
- Brunel Innovation Centre (BIC), Brunel University, Cambridge CB21 6AL, UK.
- TWI Ltd., Granta Park, Great Abington, Cambridge CB21 6AL, UK.
| | - Andrew Round
- Brunel Innovation Centre (BIC), Brunel University, Cambridge CB21 6AL, UK.
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15
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Craw P, Mackay RE, Naveenathayalan A, Hudson C, Branavan M, Sadiq ST, Balachandran W. A Simple, Low-Cost Platform for Real-Time Isothermal Nucleic Acid Amplification. Sensors (Basel) 2015; 15:23418-30. [PMID: 26389913 PMCID: PMC4610544 DOI: 10.3390/s150923418] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Revised: 08/28/2015] [Accepted: 09/01/2015] [Indexed: 11/17/2022]
Abstract
Advances in microfluidics and the introduction of isothermal nucleic acid amplification assays have resulted in a range of solutions for nucleic acid amplification tests suited for point of care and field use. However, miniaturisation of instrumentation for such assays has not seen such rapid advances and fluorescence based assays still depend on complex, bulky and expensive optics such as fluorescence microscopes, photomultiplier tubes and sensitive lens assemblies. In this work we demonstrate a robust, low cost platform for isothermal nucleic acid amplification on a microfluidic device. Using easily obtainable materials and commercial off-the-shelf components, we show real time fluorescence detection using a low cost photodiode and operational amplifier without need for lenses. Temperature regulation on the device is achieved using a heater fabricated with standard printed circuit board fabrication methods. These facile construction methods allow fabrications at a cost compatible with widespread deployment to resource poor settings.
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Affiliation(s)
- Pascal Craw
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK.
- Oceans and Atmosphere flagship, Commonwealth Science and Industrial Research Organisation (CSIRO), Hobart, Tasmania 7001, Australia.
| | - Ruth E Mackay
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK.
| | - Angel Naveenathayalan
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK.
| | - Chris Hudson
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK.
| | - Manoharanehru Branavan
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK.
| | - S Tariq Sadiq
- Institute for Infection and Immunity, St George's University of London, Cranmer Terrace, London SW17 0RE, UK.
| | - Wamadeva Balachandran
- College of Engineering, Design and Physical Sciences, Brunel University London, Kingston Lane, Uxbridge UB8 3PH, UK.
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16
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Mackay RE, Branavan M, Craw P, Naveenathayalan A, Sadiq ST, Balachandran W. P07.06 A low cost, hand-held point of care molecular diagnostic device for sexually transmitted infections. Br J Vener Dis 2015. [DOI: 10.1136/sextrans-2015-052270.322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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17
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Mackay R, Craw P, Branavan M, Sadiq T, Balachandran W. P193 Development of a handheld point of care molecular diagnostic device for sexually transmitted infections. Br J Vener Dis 2015. [DOI: 10.1136/sextrans-2015-052126.237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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18
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Fateri S, Boulgouris NV, Wilkinson A, Balachandran W, Gan TH. Frequency-sweep examination for wave mode identification in multimodal ultrasonic guided wave signal. IEEE Trans Ultrason Ferroelectr Freq Control 2014; 61:1515-1524. [PMID: 25167151 DOI: 10.1109/tuffc.2014.3065] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Ultrasonic guided waves can be used to assess and monitor long elements of a structure from a single position. The greatest challenges for any guided wave system are the plethora of wave modes arising from the geometry of the structural element which propagate with a range of frequency-dependent velocities and the interpretation of these combined signals reflected by discontinuities in the structural element. In this paper, a novel signal processing technique is presented using a combination of frequency-sweep measurement, sampling rate conversion, and Fourier transform. The technique is applied to synthesized and experimental data to identify different modes in complex ultrasonic guided wave signals. It is demonstrated throughout the paper that the technique also has the capability to derive the time of flight and group velocity dispersion curve of different wave modes in field inspections.
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19
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Abstract
In the era of the diffusion of e-commerce and its services offered to the consumers over the Internet, the Internet is commonly used by both consumers and businesses to buy and sell their goods and services worldwide. This study focuses on the factors influencing customers' decisions and attitudes toward adopting online shopping in Jordan. The study found that online shopping in Jordan is still not very common, due to challenges and barriers that affect the diffusion of online shopping: delivery barriers, such as the lack of prepared transportation and mapping infrastructure, lack of reliable delivery system for delivering bought goods to the customers caused by the lack of postcode system; and lack of knowledge and awareness about the benefits of e-commerce among retailers and consumers. A structured questionnaire was distributed among 50 participants (university students, employees/professionals etc.), and then the collected data were analyzed using the Statistical Package for Social Sciences Version 18.02 (SPSS). The results show that attitudes toward online shopping and intention to shop online were affected by lack of human resources, such as low level of experience in using the Internet and shopping websites for shopping, lack of developed IT infrastructure, trust in e-retailers, and online payment and delivery service concerns. However, Jordanian consumers are willing to adopt and recommend online shopping for others as an alternative way for shopping.
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Affiliation(s)
- Ahmad Nabot
- College of Engineering, Design and Physical Sciences, Brunel University, Uxbridge, UK
| | - Vanja Garaj
- College of Engineering, Design and Physical Sciences, Brunel University, Uxbridge, UK
| | - Wamadeva Balachandran
- College of Engineering, Design and Physical Sciences, Brunel University, Uxbridge, UK
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20
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D'Addio L, Carotenuto C, Balachandran W, Lancia A, Di Natale F. Experimental analysis on the capture of submicron particles (PM0.5) by wet electrostatic scrubbing. Chem Eng Sci 2014. [DOI: 10.1016/j.ces.2013.11.044] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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21
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Manivannan N, Balachandran W, Beleca R, Abbod M. Non-Thermal Plasma Technology for the Abatement of NOx and SOx from the Exhaust of Marine Diesel Engine. ACTA ACUST UNITED AC 2014. [DOI: 10.7763/jocet.2014.v2.130] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
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22
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Manivannan N, Neil MAA, Balachandran W. Optical alignment of pixelated 4f optical system using multiplexed filter. Appl Opt 2013; 52:7812-7820. [PMID: 24216742 DOI: 10.1364/ao.52.007812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2013] [Accepted: 10/10/2013] [Indexed: 06/02/2023]
Abstract
Novel optical alignment techniques to perform precise alignment of a typical pixelated 4f optical system are presented in this paper. These techniques use optical multiplexed matched filters, which were designed using a simple, efficient iterative optimization algorithm, known as direct binary search. Three alignment challenges are identified: positioning, focusing, and magnification. The first two alignments were performed using the optical multiplexed matched filtering technique, and the last one was performed using a new optical arrangement. Experimental results of the new alignment techniques and a simple optical pattern recognition problem to demonstrate the benefits of the new alignment techniques are also presented. Two pixelated, electrically addressed spatial light modulators (128 × 128 pixels and one pixel width is 80 μm) were used to represent the input and filter planes. The results clearly show that the new alignment techniques allow the 4f system to be aligned to a precision of 80 μm in the x-y direction and 0.716 mm in the z direction.
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23
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D’Addio L, Di Natale F, Carotenuto C, Balachandran W, Lancia A. A lab-scale system to study submicron particles removal in wet electrostatic scrubbers. Chem Eng Sci 2013. [DOI: 10.1016/j.ces.2013.04.006] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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24
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Al-nawayseh MK, Alnabhan MM, Al-Debei MM, Balachandran W. An Adaptive Decision Support System for Last Mile Logistics in E-Commerce. International Journal of Decision Support System Technology 2013. [DOI: 10.4018/jdsst.2013010103] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Last mile logistics represent one of the most important challenging issues in online grocery shopping. Online customers are expecting high logistical services, demanding convenience, high reliable and on-time delivery services. As such, online retailers have to respond to these expectations by providing convenient logistical services while keeping this process cost efficient as much as possible. This research aims to design an e-commerce logistical decision support system for online grocery shopping in Jordan as a case study from the developing countries. Online grocery retailers are supposed to use this model in order to select the most suitable delivery operating system in the future. To implement and evaluate this model, one of the available routing and scheduling online solutions (i.e. “My Route Online”) is used to identify, analyse, and compare the cost efficiencies of the available alternative delivery solutions. The system is tested using real data over three different delivery alternatives (i.e. home delivery, delivery point and pickup point) in order to evaluate and compare their cost efficiencies. The findings from the experiments show that there are significant differences amongst the three delivery alternatives on the basis of three KPIs: cost, distance and time. The findings also indicate that the time indicator has more powerful change effect on cost than distance for all delivery alternatives. According to the level of investments online grocery retailers are willing to offer, customer preferences, and the experimental results, it is concluded that pickup point solution is the best logistical strategy for online grocery retailers to start with.
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25
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Abstract
Nucleic Acid Testing (NAT) promises rapid, sensitive and specific diagnosis of infectious, inherited and genetic disease. The next generation of diagnostic devices will interrogate the genetic determinants of such conditions at the point-of-care, affording clinicians prompt reliable diagnosis from which to guide more effective treatment. The complex biochemical nature of clinical samples, the low abundance of nucleic acid targets in the majority of clinical samples and existing biosensor technology indicate that some form of nucleic acid amplification will be required to obtain clinically relevant sensitivities from the small samples used in point-of-care testing (POCT). This publication provides an overview and thorough review of existing technologies for nucleic acid amplification. The different methods are compared and their suitability for POCT adaptation are discussed. Current commercial products employing isothermal amplification strategies are also investigated. In conclusion we identify the factors impeding the integration of the methods discussed in fully automated, sample-to-answer POCT devices.
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Affiliation(s)
- Pascal Craw
- Department of Electronic & Computer Engineering, School of Engineering & Design, Brunel University, London, UK.
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Voula G, Balachandran W, Lowndes C, Howell-Jones R, Aicken CR, Mercer CH, Sutcliffe L, Sonnenberg P, Jackson M, Estcourt CS, Sadiq ST, Hone K. P111 A user centred approach to the design of point-of-care and self-test mobile phone diagnostics for sexually transmitted infections (STIs). Br J Vener Dis 2012. [DOI: 10.1136/sextrans-2012-050601c.111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Abstract
Spray drying is a widely used process to produce pharmaceutical powders. In traditional spray drying, the particle size distribution is wide and not well controlled. Using EHD atomization for spray drying offers a possibility to tailor the particle size and morphology. In conventional EHD spray drying, the generated particles are charged and need to be discharged to avoid Rayleigh breakup. Discharging adds complexity to the process and eliminates the possibility to collect the powder using an electric field. The present work describes a novel EHD spray drying setup based on a low-voltage nozzle. The low-voltage nozzle imparts moderate charge to the droplets, which makes discharging unnecessary. The charged particles can be controlled and collected by using an auxiliary electric field. The EHD spray dryer has been characterized in terms of particle size, particle morphology, process output, and yield. The size distribution of the generated particles is very narrow. Both porous and completely spherical particles can be produced. The yield of small-scale bench-top equipment was 20%, which is similar to the yield of a small-scale conventional spray dryer. The effective output with five nozzles was 75 mg/hr of dry powder. Because of the repelling forces associated with the unipolarly charged droplets, the number of nozzles can be increased without risking coalescence.
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Bahmanyar M, Balachandran W. Beat to beat classification of long electrocardiograms using entropies and hierarchical clustering. Conf Proc IEEE Eng Med Biol Soc 2007; 2005:5579-81. [PMID: 17281519 DOI: 10.1109/iembs.2005.1615749] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
This paper introduces an entropy based method for beat to beat classification of long electrocardiograms (ECGs). A state vector is reconstructed using Taken's delay coordinates method and Shannon entropies are calculated for each beat to form feature vectors. Hierarchical clustering is applied to these vectors to classify the beats. The algorithm was used for detection of atrial premature beats and ventricular premature beats in long electrocardiograms.
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Affiliation(s)
- M Bahmanyar
- School of Engineering and Design, Brunel University, Uxbridge, Middlesex, UB8 3PH, UK (phone:(44) 1895 265407; fax:(44) 1895 258728; e-mail: )
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Hunaiti Z, Garaj V, Balachandran W. An assessment of the video image quality required in a remote vision guidance system for visually impaired pedestrians. J Telemed Telecare 2007; 12:400-3. [PMID: 17227605 DOI: 10.1258/135763306779378672] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
A study was carried out to determine the most acceptable quality of video images for use in remote guidance of visually impaired pedestrians. A video image clip of 20 s duration was captured using a digital camera, while walking a sample route. The video image clip was encoded at bit rates of 30 and 48 kbit/s, and frame rates of 10, 7.5, 5 and 2.7 fps. Two standard resolutions were used: Quarter Common Intermediate Format (QCIF) (176 x 144 pixels) and Common Intermediate Format (CIF) (352 x 288 pixels). Twelve participants gave their judgment on the picture update rate (smoothness of movement), the bit rate and the static resolution. The mean scores for total quality (five-point scale) ranged from 3.3 to 4.8, but there was no significant difference between them. The mean scores for smoothness (five-point scale) ranged from 3.0 to 4.7, but there was no significant difference between them. The mean score for the resolution of the QCIF video clips was 2.9 (SD = 0.9) and for the CIF recordings were 4.1 (SD = 0.7), but there was no significant difference between them. The majority of the participants were most comfortable with video which was transmitted at 48 kbit/s and 7.5 fps. Therefore, this quality can be considered satisfactory for remote guidance.
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Affiliation(s)
- Z Hunaiti
- School of Engineering and Design, Brunel University, Uxbridge, UK.
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Abstract
Current trends observed in air pollution control technology are closely related to the development of new, more efficient hybrid systems, i.e., those, which simultaneously utilize two or more physical mechanisms for dust or gaseous contaminants removal. These systems can operate more economically than conventional devices, especially in the removal of PM2.5 particles. The electrostatic scrubber (electroscrubber), discussed in this paper, is one of such types of devices, which combines advantages of electrostatic precipitators and inertial wet scrubbers, and removes many shortcomings inherent to both of these systems operating independently. The electroscrubber is a device in which Coulomb attraction or repulsion forces between electrically charged scrubbing droplets (collector) and dust particles are utilized for the removal of particles from a gas. Unlike wet electrostatic precipitators in which particles are precipitated only on the collection electrode, in electroscrubbers, the collection of dust particles takes place in the entire precipitator chamber. Compared to inertial scrubbers, the electroscrubbers can operate at lower droplet velocities, but the collection efficiency for a single droplet can be larger than 1. The paper reviews the state-of-the-art of wet electrostatic scrubbing (electroscrubbing) technique used for gas cleaning from dust or smoke particles. Three groups of problems are discussed: (1) The fundamental problems concerning the charged dust particle deposition on a charged collector, usually a drop, with a focus on different models describing the process. (2) The experimental works of fundamental importance to our knowledge referring to the scrubbing process, which can be used for validating the theory. (3) The laboratory demonstrations and industrial tests of different constructions of electroscrubbers designed for effective gas cleaning. The electroscrubber is not designed to replace wet or dry electrostatic precipitators but can be used as a complementary device following the last stage of conventional electrostatic precipitator, which helps to remove submicron particles. It was shown in the paper that a higher collection efficiency of an electroscrubber could be obtained for higher values of Coulomb number (i.e., higher electric charges on the collector and particle), and for a Stokes number lower than5 (i.e., low particle-collector relative velocity).
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Affiliation(s)
- Anatol Jaworek
- Institute of Fluid Flow Machinery, Polish Academy of Sciences, 80-952 Gdañsk, Fiszera 14, Poland.
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Ahern JC, Balachandran W. Experimental Electrohydrodynamic Nanospray Production Using Drawn Glass Capillaries. Particulate Science and Technology 2006. [DOI: 10.1080/02726350600840506] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Yang HT, Viswanathan S, Balachandran W, Ray MB. Modeling and measurement of electrostatic spray behavior in a rectangular throat of Pease-Anthony venturi scrubber. Environ Sci Technol 2003; 37:2547-2555. [PMID: 12831042 DOI: 10.1021/es0261067] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
This paper presents the simulation and experimental results of the distribution of droplets produced by electrostatic nozzles inside a venturi scrubber. The simulation model takes into account initial liquid momentum, hydrodynamic, gravitational and electric forces, and eddy diffusion. The velocity and concentration profile of charged droplets injected from an electrostatic nozzle in the scrubber under the combined influence of hydrodynamic and electric fields were simulated. The effects of operating parameters, such as gas velocity, diameter of the scrubbing droplets, charge-to-mass ratio, and liquid-to-gas ratio on the distribution of the water droplets within the scrubber, were also investigated. The flux distribution of scrubbing liquid in the presence of electric field is improved considerably over a conventional venturi scrubber, and the effect increases with the increase in charge-to-mass ratio. Improved flux distribution using charged droplets increases the calculated overall collection efficiency of the submicron particles. However, the effect of an electric field on the droplet distribution pattern for small drop sizes in strong hydrodynamic field conditions is negligible. Simulated results are in good agreement with the experimental data obtained in the laboratory.
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Affiliation(s)
- H T Yang
- Department of Chemical and Environmental Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117576
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Abstract
The authors present a method for separation of two latex spheres populations using dielectrophoresis (DEP) and the fluid drag force. Microelectrodes of a suitable layout are used to trap one population of spheres, while the other one is dragged away from the electrodes by the generated fluid flow. The finite difference method is implemented in C++ to calculate the potential distribution by solving Laplace's equation. From the potential distribution, the DEP force on particles is calculated. The drag force on particles due to the liquid motion is calculated from the observed fluid velocity. The experimental results are shown to be in good agreement with the numerical solution.
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Banks DJ, Balachandran W, Richards PR, Ewins D. Instrumentation to evaluate neural signal recording properties of micromachined microelectrodes inserted in invertebrate nerve. Physiol Meas 2002; 23:437-48. [PMID: 12051313 DOI: 10.1088/0967-3334/23/2/317] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The design and characterization of instrumentation for application in evaluating the neural signal recording properties of probe-type microelectrodes, micromachined from silicon, are reported. Key aspects include the close matching of gain and frequency response between channels (better than 1%), flexibility in signal conditioning options, the ability to operate with a wide range of (microelectrode) recording site dimensions (4 microm x 4 micrm to 50 microm x 50 microm), and hence impedances, and the facility to monitor and store instrumentation settings on computer along with the recorded signals. Noise levels ranged from 3.7 microV rms for a 50 microm site, to 11.7 microV rms for a microm site, measured in saline. Close matching between channels was required to enable comparisons between different sites and different probes to be made with confidence; however, the instrumentation could be readily applied to less demanding applications.
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Affiliation(s)
- D J Banks
- Centre for Biomedical Engineering, School of Engineering, University of Surrey, Guildford, UK
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Ensell G, Banks DJ, Richards PR, Balachandran W, Ewins DJ. Silicon-based microelectrodes for neurophysiology, micromachined from silicon-on-insulator wafers. Med Biol Eng Comput 2000; 38:175-9. [PMID: 10829410 DOI: 10.1007/bf02344773] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A process is described for the fabrication of silicon-based microelectrodes for neurophysiology using bonded and etched-back silicon-on-insulator (BESOI) wafers. The probe shapes are defined without high levels of boron doping in the silicon; this is considered as a step towards producing probes with active electronics integrated directly beneath the electrodes. Gold electrodes, of 4 microns by 4 microns to 50 microns by 50 microns are fabricated on shanks (cantilever beams) 6 microns thick and which taper to an area approximately 100 microns wide and 200 microns long, which are inserted into the tissue under investigation. The passive probes fabricated have been successfully employed to make acute recordings from locust peripheral nerve.
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Affiliation(s)
- G Ensell
- Department of Electronics and Computer Science, University of Southampton, UK
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Wood DE, Ewins DJ, Balachandran W. Comparative analysis of power-line interference between two- or three-electrode biopotential amplifiers. Med Biol Eng Comput 1995; 33:63-8. [PMID: 7616784 DOI: 10.1007/bf02522948] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Differential input amplifiers are commonly used in the measurement of biopotential signals. This is because of their ability to reject common-mode signals, for example power-line interference. Rejection is further enhanced by referencing the subject to the instrumentation system. One such referencing technique uses a third subject electrode connected either to circuit common or to ground. However, these techniques are rarely explained or quantified in the literature. Four recording configurations are examined, isolated and non-isolated amplifiers with two and with three electrodes, and existing models are extended. From a brief assessment of power-line interference sources, it is concluded that only displacement currents induced into the leads and the body need be considered. The effect of these on the four configurations is analysed using SPICE. Results show that interference from displacement currents induced into the leads and into the body is dependent upon the recording configuration used and is significantly lower in three-electrode than in two-electrode amplifiers. Isolation also reduces levels of interference. It is concluded that the choice of referencing may affect interference levels on the biopotential signal significantly. Experimental and further analytical work is planned to confirm this.
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Affiliation(s)
- D E Wood
- Department of Mechanical Engineering, University of Surrey, Guildford, UK
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