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Li M, Tang J, Yuan M, Huang B, Liu Y, Wei L, Han Y, Zhang X, Wang X, Yu G, Sang X, Fan N, Cai S, Zheng Y, Zhang M, Wang X. Outer fold is sole effective tissue among three mantle folds with regard to oyster shell colour. Int J Biol Macromol 2023; 241:124655. [PMID: 37121412 DOI: 10.1016/j.ijbiomac.2023.124655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Revised: 04/21/2023] [Accepted: 04/24/2023] [Indexed: 05/02/2023]
Abstract
Molluscs constitute the second largest phylum of animals in the world, and shell colour is one of their most important phenotypic characteristics. In this study, we found among three folds on the mantle edge of oyster, only the outer fold had the same colour as the shell. Transcriptome and mantle cutting experiment indicated that the outer fold may be mainly reflected in chitin framework formation and biomineralisation. There were obvious differences in SEM structure and protein composition between the black and white shell periostraca. The black shell periostraca had more proteins related to melanin biosynthesis and chitin binding. Additionally, we identified an uncharacterized protein gene (named as CgCBP) ultra-highly expressed only in the black outer fold and confirmed its function of chitin-binding and CaCO3 precipitation promoting. RNAi also indicated that CgCBP knockdown could change the structure of shell periostracum and reduce shell pigmentation. All these results suggest that the mantle outer fold plays multiple key roles in shell periostraca bioprocessing, and shell periostracum structure affected by chitin-binding protein is functionally correlated with shell pigmentation. The investigation of oyster shell periostracum structure and shell colour will provide a better understanding in pigmentation during biological mineralisation in molluscs.
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Affiliation(s)
- Mai Li
- School of Agriculture, Ludong University, Yantai, China
| | - Juyan Tang
- School of Agriculture, Ludong University, Yantai, China
| | | | - Baoyu Huang
- School of Agriculture, Ludong University, Yantai, China
| | - Yaqiong Liu
- School of Agriculture, Ludong University, Yantai, China
| | - Lei Wei
- School of Agriculture, Ludong University, Yantai, China
| | - Yijing Han
- School of Agriculture, Ludong University, Yantai, China
| | - Xuekai Zhang
- School of Agriculture, Ludong University, Yantai, China
| | - Xiaona Wang
- School of Agriculture, Ludong University, Yantai, China
| | - Guoxu Yu
- Changdao National Marine Park Management Center, Yantai, China
| | - Xiuxiu Sang
- School of Agriculture, Ludong University, Yantai, China
| | - Nini Fan
- Changdao Enhancement and Experiment Station, Chinese Academy of Fishery Sciences, Yantai, China
| | - Shuai Cai
- Changdao Enhancement and Experiment Station, Chinese Academy of Fishery Sciences, Yantai, China
| | - Yanxin Zheng
- Changdao Enhancement and Experiment Station, Chinese Academy of Fishery Sciences, Yantai, China
| | - Meiwei Zhang
- School of Agriculture, Ludong University, Yantai, China.
| | - Xiaotong Wang
- School of Agriculture, Ludong University, Yantai, China.
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2
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Chen YL, Kumar R, Liu CH, Wang HC. In Litopenaeus vannamei, the cuticular chitin-binding proteins LvDD9A and LvDD9B retard AHPND pathogenesis but facilitate WSSV infection. Dev Comp Immunol 2021; 120:103999. [PMID: 33444644 DOI: 10.1016/j.dci.2021.103999] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Revised: 01/04/2021] [Accepted: 01/07/2021] [Indexed: 06/12/2023]
Abstract
Acute hepatopancreatic necrosis disease (AHPND) is a serious bacterial disease caused by V. parahaemolyticus strains which contain a virulent plasmid that encodes a binary pore-forming Pir toxin. Typically, these AHPND-causing bacteria first colonize in the shrimp stomach and then later cross to the hepatopancreas. To do this, they must pass through structural barriers which include the pliant cuticular lining of the stomach lumen. A previous transcriptomic study of shrimp challenged with the virulent 5HP strain of V. parahaemolyticus found significant upregulation of a contig associated with the cuticular proteins LvDD9A and LvDD9B. Here, we confirmed that the mRNA levels of these two genes were significantly upregulated not only in 5HP-infected shrimp, but also in the stomach of shrimp challenged with the white spot syndrome virus (WSSV). Using dsRNA-mediated gene silencing, we found that AHPND-causing bacteria migrated to the hepatopancreas within 3 h of AHPND infection in LvDD9A/B-silenced shrimp. Shrimp shell hardness of LvDD9A/B-silenced shrimp was also significantly decreased. Conversely, we found that silencing of LvDD9A/B significantly inhibited both WSSV gene expression and genome replication. Taken together, our data suggests that LvDD9A and LvDD9B are involved in both AHPND and WSSV infection. However, in AHPND, these cuticular proteins help to prevent bacterial migration from the stomach to the hepatopancreas, whereas in WSSV infection, they facilitate viral gene expression and genome replication.
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Affiliation(s)
- Yi-Lun Chen
- Department of Biotechnology and Bioindustry Sciences, College of Biosciences and Biotechnology, National Cheng Kung University, Tainan, 701, Taiwan
| | - Ramya Kumar
- Department of Biotechnology and Bioindustry Sciences, College of Biosciences and Biotechnology, National Cheng Kung University, Tainan, 701, Taiwan; International Center for the Scientific Development of Shrimp Aquaculture, National Cheng Kung University, Tainan, 701, Taiwan
| | - Chun-Hung Liu
- Department of Aquaculture, National Pingtung University of Science and Technology, Pingtung, Taiwan
| | - Han-Ching Wang
- Department of Biotechnology and Bioindustry Sciences, College of Biosciences and Biotechnology, National Cheng Kung University, Tainan, 701, Taiwan; International Center for the Scientific Development of Shrimp Aquaculture, National Cheng Kung University, Tainan, 701, Taiwan.
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3
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Xu S, Jing M, Kong DM, Wang YR, Zhou Q, Liu WY, Jiao F, Li YJ, Xie SY. Chitin binding protein from the kuruma shrimp Marsupenaeus japonicus facilitates the clearance of Vibrio anguillarum. Dev Comp Immunol 2021; 117:103981. [PMID: 33340592 DOI: 10.1016/j.dci.2020.103981] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2020] [Revised: 12/13/2020] [Accepted: 12/15/2020] [Indexed: 06/12/2023]
Abstract
Peritrophic membrane (PM) refers to a vital physical barrier enabling shrimp to resist pathogen invasion. It primarily consists of chitin and proteins, mostly chitin-binding protein (CBP). CBPs have been identified from microorganisms to higher organisms. In the present study, a CBP, designated MjCBP, was reported from Marsupenaeus japonicus. The open reading frame of MjCBP was 1854 bp, encoding a protein with 618 amino acids (MH544098). To be specific, the theoretical pI and molecular mass of mature MjCBP reached 5.43 and 66064.00 Da, respectively. MjCBP consisted of seven type Ⅱ chitin-binding domains (ChtB D2), which was up-regulated after being challenged with Vibrio anguillarum and then agglutinating several bacteria. In addition, MjCBP and the first chitin-binding domain (CBD1) could bind to several Gram-positive and Gram-negative bacteria via the binding process to lipopolysaccharides and peptidoglycans, whereas CBD1 was not capable of agglutinating bacteria. Moreover, the anterior and posterior segments of CBD1 were synthesized in vitro, and the posterior segment could bind to lipopolysaccharides. However, both segments fail to agglutinate bacteria. Furthermore, MjCBP and CBD1 facilitated the clearance of V. anguillarum in vivo, and the silencing of MjCBP via RNA interference reduced the ability of bacterial clearance. As revealed from the mentioned results, MjCBP acts as an opsonin or pattern recognition receptor to achieve antibacterial immune response in shrimp.
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Affiliation(s)
- Sen Xu
- Key Laboratory of Tumor Molecular Biology, Department of Clinical Medicine, Binzhou Medical University, Yantai, 264003, China.
| | - Ming Jing
- Key Laboratory of Tumor Molecular Biology, Department of Clinical Medicine, Binzhou Medical University, Yantai, 264003, China
| | - De-Min Kong
- Key Laboratory of Tumor Molecular Biology, Department of Clinical Medicine, Binzhou Medical University, Yantai, 264003, China
| | - Ya-Ru Wang
- Key Laboratory of Tumor Molecular Biology, Department of Clinical Medicine, Binzhou Medical University, Yantai, 264003, China
| | - Quan Zhou
- Key Laboratory of Tumor Molecular Biology, Department of Clinical Medicine, Binzhou Medical University, Yantai, 264003, China
| | - Wen-Ying Liu
- Key Laboratory of Tumor Molecular Biology, Department of Clinical Medicine, Binzhou Medical University, Yantai, 264003, China
| | - Fei Jiao
- Key Laboratory of Tumor Molecular Biology, Department of Clinical Medicine, Binzhou Medical University, Yantai, 264003, China
| | - You-Jie Li
- Key Laboratory of Tumor Molecular Biology, Department of Clinical Medicine, Binzhou Medical University, Yantai, 264003, China
| | - Shu-Yang Xie
- Key Laboratory of Tumor Molecular Biology, Department of Clinical Medicine, Binzhou Medical University, Yantai, 264003, China.
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Lopes TDP, Souza PFN, da Costa HPS, Pereira ML, da Silva Neto JX, de Paula PC, Brilhante RSN, Oliveira JTA, Vasconcelos IM, Sousa DOB. Mo-CBP 4, a purified chitin-binding protein from Moringa oleifera seeds, is a potent antidermatophytic protein: In vitro mechanisms of action, in vivo effect against infection, and clinical application as a hydrogel for skin infection. Int J Biol Macromol 2020; 149:432-442. [PMID: 32004601 DOI: 10.1016/j.ijbiomac.2020.01.257] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Revised: 01/09/2020] [Accepted: 01/25/2020] [Indexed: 12/29/2022]
Abstract
Dermatophytes belonging to Trichophyton ssp. are important anthropophilic and zoophilic pathogens, which developed resistance to griseofulvin, the common antifungal drug used to treat dermatophytosis. In this context, Moringa oleifera seed proteins have been described as antifungal agents with potential applications. Thus, this work aimed to evaluate the antidermatophytic in vitro, focusing on mechanisms, and in vivo potential of Mo-CBP4, purified from M. oleifera seeds. Mo-CBP4was purified after protein extraction with 50 mM Tris-HCl buffer, pH 8.0, and chromatography on chitin and CM Sepharose™ columns and antidermatophytic potential of Mo-CBP4 evaluated in vitro and in vivo. In vitro, Mo-CBP4 reduced in 50% the germination of microconidia of Trichophyton mentagrophytes at 45 μM; but did not show inhibition of mycelial growth. Mo-CBP4 (45 μM) presents the inhibitory activity even when incubated with N-acetyl-d-glucosamine (NAG). Analysis of the mechanisms of Mo-CBP4 revealed an increase in membrane permeability, ROS overproduction and damage to cell wall leading to microconidia death. Furthermore, using in vivo models, Mo-CBP4 (5, 10 and 20 mg g-1) reduced the severity and time of dermatophytosis. Altogether, these findings indicate that Mo-CBP4 has great potential for the development of novel antifungal drugs for the clinical treatment of dermatophytosis.
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Affiliation(s)
| | - Pedro Filho Noronha Souza
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | | | - Mirella Leite Pereira
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | - João Xavier da Silva Neto
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | - Paulo Carvalho de Paula
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | | | - Jose Tadeu Abreu Oliveira
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | - Ilka Maria Vasconcelos
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
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5
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Kawabata SI, Shibata T. Purification and Assays of Tachycitin. Methods Mol Biol 2020; 2132:317-323. [PMID: 32306339 DOI: 10.1007/978-1-0716-0430-4_31] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
An antimicrobial peptide tachycitin (73 amino acids) is purified by steps of chromatography, including Sephadex G-50 and S Sepharose FF, from the acid extract of hemocyte debris of horseshoe crabs. Tachycitin is present in monomer form in solution, revealed by ultracentrifugation analysis. Tachycitin exhibits bacterial agglutination activity and inhibits the growth of both Gram-negative bacteria, Gram-positive bacteria, and fungus Candida albicans. Interestingly, tachycitin shows synergistic antimicrobial activity in corporation with another antimicrobial peptide, big defensin. Tachycitin shows a specific binding activity to chitin but not to cellulose, mannan, xylan, and laminarin. Tachycitin is composed of the N-terminal three-stranded β-sheet and the C-terminal two-stranded β-sheet following a short helical turn, and the C-terminal structural motif shares a significant structural similarity with the chitin-binding domain derived from a plant chitin-binding protein, hevein.
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Affiliation(s)
| | - Toshio Shibata
- Department of Biology, Faculty of Science, Kyushu University, Fukuoka, Japan
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6
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Ali M, Gai WX, Khattak AM, Khan A, Haq SU, Ma X, Wei AM, Muhammad I, Jan I, Gong ZH. Knockdown of the chitin-binding protein family gene CaChiIV1 increased sensitivity to Phytophthora capsici and drought stress in pepper plants. Mol Genet Genomics 2019. [PMID: 31175439 DOI: 10.1007/s00438-019-01583-1587] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/27/2023]
Abstract
Phytophthora capsici has been the most destructive pathogen of pepper plants (Capsicum annuum L.), possessing the ability to quickly overcome the host defense system. In this context, the chitin-binding protein (CBP) family member CaChiIV1 regulates the response to P. capsici and abiotic stresses. The relevance of functional characterization and regulation of CaChiIV1 has not been explored in horticultural crops, especially pepper plants. The target gene (CaChiIV1) was isolated from pepper plants and cloned; the encoded protein carries a chitin-binding domain (CBD) that is rich in cysteine residues and has a hinge region with an abundance of proline and glycine residues. Additionally, the conserved regions in the promoter have a remarkable motif, "TTGACC". The expression of CaChiIV1 was markedly regulated by methyl-jasmonate (MeJA), hydrogen peroxide (H2O2), melatonin, mannitol and P. capsici (PC and HX-9) infection. Knockdown of CaChiIV1 in pepper plants increased sensitivity to P. capsici (PC strain). Higher malondialdehyde (MDA) content and relative electrolyte leakage (REL) but lower antioxidant enzyme activities, chlorophyll content, root activity, and proline content were observed in CaChiIV1-silenced plants than in control plants. In conclusion, CaChiIV1-silenced pepper plants displayed increased susceptibility to P. capsici infection due to changes in expression of defense-related genes, thus showing its coregulation affect in particular conditions. Furthermore, antioxidant enzymes and proline content were largely diminished in CaChiIV1-silenced plants. Therefore, this evidence suggests that the CaChiIV1 gene plays a prominent role in the defense mechanism of pepper plants against P. capsici infection. In the future, the potential role of the CaChiIV1 gene in defense regulatory pathways and its coregulation with other pathogen-related genes should be identified.
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Affiliation(s)
- Muhammad Ali
- College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Wen-Xian Gai
- College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Abdul Mateen Khattak
- Department of Horticulture, The University of Agriculture, Peshawar, Khyber Pakhtunkhwa, Pakistan
- College of Information and Electrical Engineering, China Agricultural University, Beijing, People's Republic of China
| | - Abid Khan
- College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Saeed Ul Haq
- College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Xiao Ma
- College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Ai-Min Wei
- Tianjin Vegetable Research Center, Tianjin, 300192, People's Republic of China
| | - Izhar Muhammad
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Ibadullah Jan
- Department of Agriculture, University of Swabi, Khyber Pakhtunkhwa, Pakistan
| | - Zhen-Hui Gong
- College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
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7
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Ali M, Gai WX, Khattak AM, Khan A, Haq SU, Ma X, Wei AM, Muhammad I, Jan I, Gong ZH. Knockdown of the chitin-binding protein family gene CaChiIV1 increased sensitivity to Phytophthora capsici and drought stress in pepper plants. Mol Genet Genomics 2019; 294:1311-26. [PMID: 31175439 DOI: 10.1007/s00438-019-01583-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Accepted: 05/29/2019] [Indexed: 12/31/2022]
Abstract
Phytophthora capsici has been the most destructive pathogen of pepper plants (Capsicum annuum L.), possessing the ability to quickly overcome the host defense system. In this context, the chitin-binding protein (CBP) family member CaChiIV1 regulates the response to P. capsici and abiotic stresses. The relevance of functional characterization and regulation of CaChiIV1 has not been explored in horticultural crops, especially pepper plants. The target gene (CaChiIV1) was isolated from pepper plants and cloned; the encoded protein carries a chitin-binding domain (CBD) that is rich in cysteine residues and has a hinge region with an abundance of proline and glycine residues. Additionally, the conserved regions in the promoter have a remarkable motif, "TTGACC". The expression of CaChiIV1 was markedly regulated by methyl-jasmonate (MeJA), hydrogen peroxide (H2O2), melatonin, mannitol and P. capsici (PC and HX-9) infection. Knockdown of CaChiIV1 in pepper plants increased sensitivity to P. capsici (PC strain). Higher malondialdehyde (MDA) content and relative electrolyte leakage (REL) but lower antioxidant enzyme activities, chlorophyll content, root activity, and proline content were observed in CaChiIV1-silenced plants than in control plants. In conclusion, CaChiIV1-silenced pepper plants displayed increased susceptibility to P. capsici infection due to changes in expression of defense-related genes, thus showing its coregulation affect in particular conditions. Furthermore, antioxidant enzymes and proline content were largely diminished in CaChiIV1-silenced plants. Therefore, this evidence suggests that the CaChiIV1 gene plays a prominent role in the defense mechanism of pepper plants against P. capsici infection. In the future, the potential role of the CaChiIV1 gene in defense regulatory pathways and its coregulation with other pathogen-related genes should be identified.
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8
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Jin C, Zhao J, Pu J, Liu X, Li J. Hichin, a chitin binding protein is essential for the self-assembly of organic frameworks and calcium carbonate during shell formation. Int J Biol Macromol 2019; 135:745-51. [PMID: 31152837 DOI: 10.1016/j.ijbiomac.2019.05.205] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 05/25/2019] [Accepted: 05/28/2019] [Indexed: 12/13/2022]
Abstract
Shell biomineralization is a process where inorganic minerals accumulate upon a chitinous scaffold under the control of multifunctional matrix proteins. In this study, we cloned a novel matrix protein gene from the mantle of Hyriopsis cumingii. The predicted protein, hichin, contains a chitin-binding domain and exhibited the highest expressional level in mantle tissue, with positive signals mainly detected in dorsal epithelial cells of the pallial mantle according to in situ hybridization, indicating its possible involvement in shell nacreous layer biomineralization. RNA interference showed that hichin suppression induced disordered self-assembly of the insoluble framework in the nacreous layer, and that the newly formed calcium carbonate crystals could not bind to organic frameworks. Furthermore, hichin was primarily responsible for building the framework during initial nacre deposition in pearl formation. Moreover, the chitin-binding domain of hichin also provided crystal morphology regulation in vitro crystallization assay. These results indicated that hichin is involved in the self-assembly of organic frameworks and morphological regulation in shell nacreous layer.
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Kumar M, Brar A, Vivekanand V, Pareek N. Bioconversion of Chitin to Bioactive Chitooligosaccharides: Amelioration and Coastal Pollution Reduction by Microbial Resources. Mar Biotechnol (NY) 2018; 20:269-281. [PMID: 29637379 DOI: 10.1007/s10126-018-9812-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2016] [Accepted: 11/29/2017] [Indexed: 06/08/2023]
Abstract
Chitin-metabolizing products are of high industrial relevance in current scenario due to their wide biological applications, relatively lower cost, greater abundance, and sustainable supply. Chitooligosaccharides have remarkably wide spectrum of applications in therapeutics such as antitumor agents, immunomodulators, drug delivery, gene therapy, wound dressings, as chitinase inhibitors to prevent malaria. Hypocholesterolemic and antimicrobial activities of chitooligosaccharides make them a molecule of choice for food industry, and their functional profile depends on the physicochemical characteristics. Recently, chitin-based nanomaterials are also gaining tremendous importance in biomedical and agricultural applications. Crystallinity and insolubility of chitin imposes a major hurdle in the way of polymer utilization. Chemical production processes are known to produce chitooligosaccharides with variable degree of polymerization and properties along with ecological concerns. Biological production routes mainly involve chitinases, chitosanases, and chitin-binding proteins. Development of bio-catalytic production routes for chitin will not only enhance the production of commercially viable chitooligosaccharides with defined molecular properties but will also provide a means to combat marine pollution with value addition.
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Affiliation(s)
- Manish Kumar
- Department of Microbiology, School of Life Sciences, Central University of Rajasthan Bandarsindri, Kishangarh, Ajmer, Rajasthan, 305801, India
| | - Amandeep Brar
- Department of Microbiology, School of Life Sciences, Central University of Rajasthan Bandarsindri, Kishangarh, Ajmer, Rajasthan, 305801, India
| | - V Vivekanand
- Centre for Energy and Environment, Malaviya National Institute of Technology, Jaipur, Rajasthan, 302017, India
| | - Nidhi Pareek
- Department of Microbiology, School of Life Sciences, Central University of Rajasthan Bandarsindri, Kishangarh, Ajmer, Rajasthan, 305801, India.
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10
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Tetreau G, Dittmer NT, Cao X, Agrawal S, Chen YR, Muthukrishnan S, Haobo J, Blissard GW, Kanost MR, Wang P. Analysis of chitin-binding proteins from Manduca sexta provides new insights into evolution of peritrophin A-type chitin-binding domains in insects. Insect Biochem Mol Biol 2015; 62:127-41. [PMID: 25524298 PMCID: PMC9346963 DOI: 10.1016/j.ibmb.2014.12.002] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2014] [Revised: 11/22/2014] [Accepted: 12/03/2014] [Indexed: 05/06/2023]
Abstract
In insects, chitin is a major structural component of the cuticle and the peritrophic membrane (PM). In nature, chitin is always associated with proteins among which chitin-binding proteins (CBPs) are the most important for forming, maintaining and regulating the functions of these extracellular structures. In this study, a genome-wide search for genes encoding proteins with ChtBD2-type (peritrophin A-type) chitin-binding domains (CBDs) was conducted. A total of 53 genes encoding 56 CBPs were identified, including 15 CPAP1s (cuticular proteins analogous to peritrophins with 1 CBD), 11 CPAP3s (CPAPs with 3 CBDs) and 17 PMPs (PM proteins) with a variable number of CBDs, which are structural components of cuticle or of the PM. CBDs were also identified in enzymes of chitin metabolism including 6 chitinases and 7 chitin deacetylases encoded by 6 and 5 genes, respectively. RNA-seq analysis confirmed that PMP and CPAP genes have differential spatial expression patterns. The expression of PMP genes is midgut-specific, while CPAP genes are widely expressed in different cuticle forming tissues. Phylogenetic analysis of CBDs of proteins in insects belonging to different orders revealed that CPAP1s from different species constitute a separate family with 16 different groups, including 6 new groups identified in this study. The CPAP3s are clustered into a separate family of 7 groups present in all insect orders. Altogether, they reveal that duplication events of CBDs in CPAP1s and CPAP3s occurred prior to the evolutionary radiation of insect species. In contrast to the CPAPs, all CBDs from individual PMPs are generally clustered and distinct from other PMPs in the same species in phylogenetic analyses, indicating that the duplication of CBDs in each of these PMPs occurred after divergence of insect species. Phylogenetic analysis of these three CBP families showed that the CBDs in CPAP1s form a clearly separate family, while those found in PMPs and CPAP3s were clustered together in the phylogenetic tree. For chitinases and chitin deacetylases, most of phylogenetic analysis performed with the CBD sequences resulted in similar clustering to the one obtained by using catalytic domain sequences alone, suggesting that CBDs were incorporated into these enzymes and evolved in tandem with the catalytic domains before the diversification of different insect orders. Based on these results, the evolution of CBDs in insect CBPs is discussed to provide a new insight into the CBD sequence structure and diversity, and their evolution and expression in insects.
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Affiliation(s)
- Guillaume Tetreau
- Department of Entomology, Cornell University, New York State Agricultural Experiment Station, Geneva, NY 14456, USA
| | - Neal T Dittmer
- Department of Biochemistry & Molecular Biophysics, Kansas State University, 141 Chalmers Hall, Manhattan, KS 66506, USA
| | - Xiaolong Cao
- Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA
| | - Sinu Agrawal
- Department of Biochemistry & Molecular Biophysics, Kansas State University, 141 Chalmers Hall, Manhattan, KS 66506, USA
| | - Yun-Ru Chen
- Boyce Thompson Institute, Cornell University, Ithaca, NY 14853-1801, USA
| | - Subbaratnam Muthukrishnan
- Department of Biochemistry & Molecular Biophysics, Kansas State University, 141 Chalmers Hall, Manhattan, KS 66506, USA
| | - Jiang Haobo
- Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078, USA
| | - Gary W Blissard
- Boyce Thompson Institute, Cornell University, Ithaca, NY 14853-1801, USA
| | - Michael R Kanost
- Department of Biochemistry & Molecular Biophysics, Kansas State University, 141 Chalmers Hall, Manhattan, KS 66506, USA
| | - Ping Wang
- Department of Entomology, Cornell University, New York State Agricultural Experiment Station, Geneva, NY 14456, USA.
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11
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Pinto CEM, Farias DF, Carvalho AFU, Oliveira JTA, Pereira ML, Grangeiro TB, Freire JEC, Viana DA, Vasconcelos IM. Food safety assessment of an antifungal protein from Moringa oleifera seeds in an agricultural biotechnology perspective. Food Chem Toxicol 2015; 83:1-9. [PMID: 26032632 DOI: 10.1016/j.fct.2015.05.012] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2014] [Revised: 05/15/2015] [Accepted: 05/21/2015] [Indexed: 10/23/2022]
Abstract
Mo-CBP3 is an antifungal protein produced by Moringa oleifera which has been investigated as potential candidate for developing transgenic crops. Before the use of novel proteins, food safety tests must be conducted. This work represents an early food safety assessment of Mo-CBP3, using the two-tiered approach proposed by ILSI. The history of safe use, mode of action and results for amino acid sequence homology using the full-length and short contiguous amino acids sequences indicate low risk associated to this protein. Mo-CBP3 isoforms presented a reasonable number of alignments (>35% identity) with allergens in a window of 80 amino acids. This protein was resistant to pepsin degradation up to 2 h, but it was susceptible to digestion using pancreatin. Many positive attributes were presented for Mo-CBP3. However, this protein showed high sequence homology with allergens and resistance to pepsin digestion that indicates that further hypothesis-based testing on its potential allergenicity must be done. Additionally, animal toxicity evaluations (e.g. acute and repeated dose oral exposure assays) must be performed to meet the mandatory requirements of several regulatory agencies. Finally, the approach adopted here exemplified the importance of performing an early risk assessment of candidate proteins for use in plant transformation programs.
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Affiliation(s)
- Clidia E M Pinto
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Campus do Pici, 60440-900, Fortaleza, CE, Brazil
| | - Davi F Farias
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Campus do Pici, 60440-900, Fortaleza, CE, Brazil.
| | - Ana F U Carvalho
- Department of Biology, Federal University of Ceará, Campus do Pici, 60440-900, Fortaleza, CE, Brazil
| | - José T A Oliveira
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Campus do Pici, 60440-900, Fortaleza, CE, Brazil
| | - Mirella L Pereira
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Campus do Pici, 60440-900, Fortaleza, CE, Brazil
| | - Thalles B Grangeiro
- Department of Biology, Federal University of Ceará, Campus do Pici, 60440-900, Fortaleza, CE, Brazil
| | - José E C Freire
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Campus do Pici, 60440-900, Fortaleza, CE, Brazil
| | - Daniel A Viana
- State University of Ceará, Campus do Itaperi, 60740-903, Fortaleza, CE, Brazil
| | - Ilka M Vasconcelos
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Campus do Pici, 60440-900, Fortaleza, CE, Brazil.
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