Correctness of the van 't Hoff analysis for homogeneous or heterogeneous retention

It is already known that the physical meaning of the numerical values of the calculated enthalpy (ΔH) and entropy (ΔS) change in chromatography via the van 't Hoff plot analysis is rather questionable. In the former work of these authors, it has been demonstrated that by serially coupling two reversed-phase columns of the same inner diameter but of different retention mechanism, the obtained thermodynamic values are not related to the numerical results obtained on the individual columns respectively. Since surface heterogeneity of the stationary phase is intrinsically present in chiral chromatography (enantioselective and non-selective sites), the calculation of ΔH and ΔS should be revisited in that field. In this study, more details of the pressure dependence were investigated. Using special POPLC columns, the effect of the column length on the calculated thermodynamic values was investigated. The calculated values differ by 30-400% when the column length is increased from 4 cm to 12 cm. The dependence of the calculated results on the applied flow rate was already highlighted earlier, and here the emphasis was put on the instrument on which the separation was performed. It turns out that there is a difference when using a Shimadzu HPLC system compared to using a Waters Acquity UPLC system. Because the Eyring method serves as an alternative route to calculate the thermodynamic values from chromatographic data, the differences obtained by the two methods were also investigated.

High Rates of Quinone-Alkyne Cycloaddition Reactions are Dictated by Entropic Factors

Reaction rates of strained cycloalkynes and cycloalkenes with 1,2-quinone were quantified by stopped flow UV-Vis spectroscopy and computational analysis. We found that the strained alkyne BCN-OH 3 (k2 1824 M-1s-1) reacts >150 times faster than the strained alkene TCO-OH 5 (k2 11.56 M-1s-1). Also, the 8-membered strained alkyne BCN-OH 3 reacts 16 times faster than the more strained 7-membered THS 2 (k2 110.6 M-1s-1). Using the linearized Eyring equation we determined the thermodynamic activation parameters of these two strained alkynes, revealing that the SPOCQ reaction of quinone 1 with THS 2 is associated with ΔH‡ of 0.80 kcal/mol, ΔS‡ = -46.8 cal/K·mol, and ΔG‡ = 14.8 kcal/mol (at 25 °C), whereas the same reaction with BCN-OH 3 is associated with, ΔH‡ = 2.25 kcal/mol, ΔS‡ = -36.3 cal/K·mol, and ΔG‡ = 13.1 kcal/mol (at 25 °C). Computational analysis supported the values obtained by the stopped-flow measurements, with calculated ΔG‡ of 15.6 kcal/mol (in H2O) for the SPOCQ reaction with THS 2, and with ΔG‡ of 14.7 kcal/mol (in H2O) for the SPOCQ reaction with BCN-OH 3. With these empirically determined thermodynamic parameters, we set an important step towards a more fundamental understanding of this set of rapid biogenic click reactions.

Kinetic study on the molecular mechanism of light-driven inward proton transport by schizorhodopsins

Schizorhodopsins (SzRs) are light-driven inward proton pumping membrane proteins. A H⁺ is released to the cytoplasmic solvent from the chromophore, retinal Schiff base (RSB), after light absorption, and then another H⁺ is bound to the RSB at the end of photocyclic reaction. However, the mechanistic detail of H⁺ transfers in SzR is almost unknown. Here we studied the deuterium isotope effect and the temperature dependence of the reaction rate constants of elementary steps in the photocycles of SzRs. The former indicated that deprotonation and reprotonation of RSB is mainly accomplished by H⁺ hopping between heavy atoms with similar H⁺ affinity. Furthermore, the temperature dependence of the rate constants revealed that most of H⁺ transfer events have a high entropy barrier. In contrast, the activation enthalpy and entropy of extremely thermostable SzR (MsSzR) are significantly higher than other types of SzRs (SzR1 and MtSzR) suggesting that its highly thermostable structure is optimized with at the cost of slower reaction rates at ambient temperatures.

Kinetics and Energetics of Thermal Cis-Trans Isomerization of a Resonance-Activated Azobenzene in BMIM-Based Ionic Liquids for PF₆-/Tf₂N- Comparison

BMIM PF₆ (1-butyl-3-methylimidazolium hexafluorophosphate) and BMIM Tf₂N (1-butyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide) are two conventional room-temperature ionic liquids widely employed and investigated as reaction media. Despite the presence of the same imidazolium ring in their structure they are different in many chemical and physical properties due to the nature of the anions. The thermal cis-trans isomerization of an electronically activated azobenzene have been used as reaction model to compare the behavior of PF₆- and Tf₂N-. Rotation is the mechanism by which the investigated azobenzene is converted into the trans isomer spontaneously in the dark both in BMIM PF₆ and in BMIM Tf₂N. The kinetic rate constants of the process have been determined at different temperatures and the activation energies of the reaction have been calculated according to the Arrhenius and Eyring equations. The results presented herein highlight different solute-solvent interactions involving the PF₆- and Tf₂N- anions during the cis-trans isomerization.