Far-field effects of the Nile damming on the silica cycle in the Southeastern Mediterranean Sea

Silica plays a key role in the growth of silicifying primary producers (e.g., diatoms) and hence the ocean carbon pump. The Mediterranean Sea's eastern Levantine Basin (ELB) is a low silica (and low N and P) ultra-oligotrophic basin. Before 1965, Nile autumn floods were a major source of dissolved silica (DSi) and other nutrients to primary producers of the ELB continental shelf, also known as the Nilotic cell. The construction of the Aswan High Dam (AHD) in the mid-1960s, blocked these floods, drastically diminishing the autumn-diatom blooms offshore the Nile delta. However, the far-reaching and long-lasting effects of the Nile damming on the Si cycle in the ELB remain unclear. Here, we studied the changes in DSi in the surface water offshore Israel and the distribution of biogenic silica in deep-sea short sediment cores, collected hundreds of kilometers from the Nile outlet, at depths range of 1100-1900 m, offshore the ELB Israeli coast. We show post dam reduction and termination in flood related seasonality of DSi and a concurrent decrease (of up to 79 %) in biogenic silica (BSi) accumulation rates in surficial sediments relative to underlying sediments. These changes reflect the effects of Si (dissolved and particulate) retention by the AHD on diatoms production, export and burial in the ELB. This far-field effect was demonstrated in deep-sea areas subjected to intense lateral transport of resuspended sediments from the shelf via intermediate nepheloid layers and to coastal water intrusions, along the path of the pre-dam, flood plumes. Our core records show that the AHD worsened nutrient-diminished, exceptionally unfavorable conditions for diatoms that persisted in the deep ELB at least during the last four millennia.

Nile waterscapes facilitated the construction of the Giza pyramids during the 3rd millennium BCE

The pyramids of Giza originally overlooked a now defunct arm of the Nile. This fluvial channel, the Khufu branch, enabled navigation to the Pyramid Harbor complex but its precise environmental history is unclear. To fill this knowledge gap, we use pollen-derived vegetation patterns to reconstruct 8,000 y of fluvial variations on the Giza floodplain. After a high-stand level concomitant with the African Humid Period, our results show that Giza's waterscapes responded to a gradual insolation-driven aridification of East Africa, with the lowest Nile levels recorded at the end of the Dynastic Period. The Khufu branch remained at a high-water level (∼40% of its Holocene maximum) during the reigns of Khufu, Khafre, and Menkaure, facilitating the transportation of construction materials to the Giza Pyramid Complex.

Demographic and clinical characteristics of children seeking psychiatric services in the Nile Delta region: an observational retrospective study

Background

Epidemiological studies, describing both community and clinical samples of youth in need for psychiatric help, are rare in the middle east. To our knowledge, this is the first study that aims to investigate the demographic and clinical characteristics of a sample of children suffering from emotional and behavioral problems seeking psychiatric services in the Nile Delta region and the largest clinical sample to date in Egypt.

Methods

The files of all new cases who presented for care in the outpatient service for children and adolescents between August 2016 and July 2018 were reviewed. Ninety-six files were excluded due to missing data while another 18 files were found to be for adults (ages > 18 years old), so the sample included 886 cases.

Results

The ages of our sample (n = 886) ranged from 18 months to 18 years with an average of 7.5 (± 3.8) years. Most of our cases were male, school aged children, living within low-income households and predominantly coming from rural areas. The most common diagnoses were attention deficit hyperactivity disorder (ADHD) (22.6%), intellectual disability (ID) (13.7%), depressive disorders (13.3%), and disruptive behavior disorders (DBD) (12.3%). Strong protective effects were found for family integrity and stability. Corporal punishment and physical and sexual abuse were noted to be significant risk factors for internalizing and externalizing disorders in children and adolescents.

Conclusions

Except for males being a majority in our sample of children seeking psychiatric consultation, demographic patterns and prevalence of psychiatric disorders are comparable to other tertiary clinical samples in other parts of the world.

The Nile River Microbiome Reveals a Remarkably Stable Community Between Wet and Dry Seasons, and Sampling Sites, in a Large Urban Metropolis (Cairo, Egypt)

World freshwater supplies are in need of microbiome diversity analyses as a first step to future ecological studies, and to monitor water safety and quality. The Nile is a major north-flowing river in Africa that displays both spatial and temporal variations in its water quality. Here, we present the first microbiome analysis of the Nile River water in two seasons: (1) summer representing the wet season, and (2) winter representing the dry season, as sampled around Cairo, the capital of Egypt. Surface river water samples were collected from selected locations along the path of river, and the microbial composition was analyzed by next-generation sequencing of the 16S rRNA gene. We found a striking stability in the Nile microbiome community structure along the examined geographical urban sites and between the wet and dry seasons as evidenced by the high proportion of shared operational taxonomic unit values among all samples. The community was dominated by the Cyanobacteria (mainly Synechococcus), Actinobacteria candidate family (ACK-M1), and Proteobacteria (mainly family Comamonadaceae). Among these dominant taxa, Synechococcus exhibited seasonal driven variation in relative abundance. Other taxa were predominantly rare across all seasons and locations, including genera members of which have been implicated as pathogens such as Acinetobacter, Aeromonas, and Legionella. In addition, comparisons with data on freshwater microbiome in other world regions suggest that surface water communities in large rivers exhibit limited variation. Our results offer the first insights on microbial composition in one of the most notable rivers near a large metropolis.

Exploring Cooperative Transboundary River Management Strategies for the Eastern Nile Basin

A water resource modeling process is demonstrated to support multistakeholder negotiations over transboundary management of the Nile River. This process addresses the challenge of identifying management options of new hydraulic infrastructure that potentially affects downstream coriparian nations and how the management of existing infrastructure can be adapted. The method includes an exploration of potential management decisions using a multiobjective evolutionary algorithm, intertwined with an iterative process of formulating cooperative strategies to overcome technical and political barriers faced in a transboundary negotiation. The case study is the addition of the Grand Ethiopian Renaissance Dam (GERD) and considers how its operation may be coordinated with adaptations to the operations of Egypt's High Aswan Dam. The results demonstrate that a lack of coordination is likely to be harmful to downstream riparians and suggest that adaptations to infrastructure in Sudan and Egypt can reduce risks to water supplies and energy generation. Although risks can be substantially reduced by agreed releases from the GERD and basic adaptations to the High Aswan Dam, these measures are still insufficient to assure that no additional risk is assumed by Egypt. The method then demonstrates how improvements to water security for both downstream riparians can be achieved through dynamic adaptation of the operation of the GERD during drought conditions. Finally, the paper demonstrates how the robustness of potential management arrangements can be evaluated considering potential effects of climate change, including increased interannual variability and highly uncertain changes such as increases in the future persistence of droughts.

Environmental radioactivity of soils and sediments: Egyptian sector of the Nile valley

The activity concentrations of natural ⁴⁰K, ²³²Th, and ²³⁸U in 89 soil and 84 sediment samples collected over the entire Egyptian Nile River basin including the Nile delta are reported based on the results of epithermal neutron activation analysis. The average activity concentrations of ⁴⁰K, ²³²Th, and ²³⁸U equal to 15.3 ± 6.6, 15.6 ± 11.1 and 220 ± 31 Bq/kg, respectively, are significantly lower than those reported for the Upper Continental Crust, World Average Sediments as well as World Average Soils, suggesting the presence of a considerable portion of mafic material, most probably originating from the Ethiopian High Plateau. Their average activity concentrations are statistically the same in soil and sediments, indicating that the Nile sediments and soil material are of the same origin. The main goal of this study was not only to estimate the radiological hazards but also to show the influence of sedimentary material transportable by the Blue Nile from the Ethiopian High Plateau. The different hazard indices like the radium equivalent, gamma index, external hazard as well as the internal hazard show a low radiological exposure either on direct contact or if local mud bricks are used in the construction of dwellings.

Integrated effect of nutrients from a recirculation aquaponic system and foliar nutrition on the yield of tomatoes Solanum lycopersicum L. and Solanum pimpinellifolium

The objective of this study was to evaluate the potential of tomato plants to efficiently use the nitrogen (N) of a recirculation aquaponic system (RAS) and to evaluate the effects of foliar fertilization as a complement to the water nutrition on the growth of the two tomato cultivars. The significant effect of six macro- and seven micronutrients was evaluated on the plant growth and on the fruit yield. Two experiments were performed in a nutrient film aquaponic unit. The first experiment was designed to study the effects of foliar fertilization on the seedlings of two tomato cultivars Costoluto Genovese (CG) (Solanum lycopersicum L.) and Currant tomato (Ct) (Solanum pimpinellifolium) with 8% of weekly water exchange (WE8%-RAS). The foliar fertilizer was formulated with N restriction in the last 11 weeks (TF1). In the second experiment, two other foliar fertilization treatments (TF2 and TF3) were applied with a concentration of nutrients twice and triple that in TF1, but with a lower proportion of NPK ratio. These treatments were tested on the cultivar CG in a RAS with zero water exchange (WE0%-RAS). The data from the 1st experiment showed a positive effect of the foliar fertilization on the yield of both cultivars. The fertilization markedly influenced the dry matter weight of the CG; however, this effect was not observed in the Ct. The root length of both cultivars was positively influenced by the P content, whereas the plant height was affected by the excess of Co and S. According to the results from the 2nd experiment, the TF2 plants had the highest number of fruits with a high mean weight. The system was efficient in utilizing N from fish tank; the water K favored the yield of the CG fruit and the foliar K favored the growth of the TF2 plants. With a decrease in the foliar N, the CG plants were able to absorb 27.5% of the NO₃^- and 7.06% of total ammonia nitrogen from water. The absolute and relative growth rate of Nile tilapia was not affected by the rate of water exchange. Fulton's condition factor of the total length and weight curve indicated that fish from WE8%-RAS had wider bodies than the fish from WE0%-RAS at the same length range. Nitrate and P in the final effluent were lower than the maximum reference values allowed for the discharged water.

Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis

Objective

Globally, more than 200 million people live at risk of the neglected tropical disease schistosomiasis (or snail fever). Larval schistosomes require the presence of specific snail species that act as intermediate hosts, supporting their multiplication and transformation into forms that can infect humans. This project was designed to generate a transcriptome from the central nervous system (CNS) of Biomphalaria alexandrina, the major intermediate host for Schistosoma mansoni in Egypt.

Results

A transcriptome was generated from five pooled central nervous systems dissected from uninfected specimens of B. alexandrina. Raw Illumina RNA-seq data (~ 20.3 million paired end reads of 150 base pairs length each) generated a transcriptome consisting of 144,213 transcript elements with an N50 contig size of 716 base pairs. Orthologs of 15,246 transcripts and homologs for an additional 16,810 transcripts were identified in the UniProtKB/Swiss-Prot database. The B. alexandrina CNS transcriptome provides a resource for future research exploring parasite-host interactions in a simpler nervous system. Moreover, increased understanding of the neural signaling mechanisms involved in the response of B. alexandrina to infection by S. mansoni larvae could lead to novel and highly specific strategies for the control of snail populations.

Electronic supplementary material

The online version of this article (10.1186/s13104-017-3018-6) contains supplementary material, which is available to authorized users.

Spatio-temporal variability of dissolved organic nitrogen (DON), carbon (DOC), and nutrients in the Nile River, Egypt

Increases in human activity have resulted in enhanced anthropogenic inputs of nitrogen (N) and carbon (C) into the Nile River. The Damietta Branch of the Nile is subject to inputs from industrial, agricultural, and domestic wastewater. This study investigated the distribution and seasonality of dissolved organic nitrogen (DON), dissolved organic carbon (DOC), and nutrients in the Nile Damietta Branch. Water samples were collected from 24 sites between May 2009 and February 2010. Dissolved organic nitrogen concentrations averaged 251 ± 115 μg/l, with a range of 90.2-671 μg/l, and contributed 40.8 ± 17.7 % to the total dissolved nitrogen (TDN) pool. Relative to autumn and winter, DON was a larger fraction of the TDN pool during spring and summer indicating the influence of bacterioplankton on the nitrogen cycle. Concentrations of DOC ranged from 2.23 to 11.3 mg/l with an average of 5.15 ± 2.36 mg/l, reflecting a high organic matter load from anthropogenic sources within the study area, and were highest during autumn. Higher values of biochemical oxygen demand (BOD), chemical oxygen demand (COD), DON, nitrate, and phosphate occurred downstream of the Damietta Branch and were probably due to anthropogenic inputs to the Nile from the Damietta district. A bacterial incubation experiment indicated that 52.1-95.0 % of DON was utilized by bacteria within 21 days. The decrease in DON concentration was accompanied by an increase in nitrate concentration of 54.8-87.3 %, presumably through DON mineralization. Based on these results, we recommend that water quality assessments consider DON and DOC, as their omission may result in an underestimation of the total organic matter load and impact.

Purpura fulminans associated with acute West Nile virus encephalitis

Purpura fulminans is a progressive thrombotic disorder that presents with widespread purpura due to deficiency or dysfunction of protein C or protein S. Lesions present as well-demarcated erythematous macules that progress to irregular areas of hemorrhagic necrosis.West Nile virus is a member of the Flaviviridae family transmitted to humans through the bite of various mosquito species. It manifests as West Nile fever in 25% of those infected and less commonly as neuroinvasive disease. An African American man in his fortiespresented with altered mental status and was noted to have evidence of disseminated intravascular coagulation according to his lab data. He then developed dusky skin discoloration and systemic flaccid bullae with desquamation. Biopsy was consistent with purpura fulminans and the patient eventually developed symmetric peripheral gangrene, requiring amputations of all four extremities. Infectious work up revealed positive testing for IgM and IgG antibodies in serum and cerebrospinal fluid leading to the diagnosis of acute West Nile Virus encephalitis. We present this case to describe the rarely reported association of purpura fulminans with West Nile Virus infection.

Regional view of a Trans-African Drainage System

Despite the arid to hyperarid climate of the Great Sahara of North Africa, pluvial climates dominated the region. Radar data shed some light on the postulated Trans-African Drainage System and its relationship to active and inactive tributaries of the Nile basin. Interpretations of recent elevation data confirm a source of the river water from the Red Sea highlands did not connect the Atlantic Ocean across Tushka basin, highlands of Uwinate and Darfur, and Chad basin, but northward to the ancestral Nile Delta. Elements of topography and climate were considered. They show that the former segments of the Nile closely mirror present-day tributaries of the Nile basin in drainage geometry, landscape, and climate. A rainfall data interpolation scenario revealed that this basin received concurrent runoff from both flanks such as Gabgaba-Allaqi to the east and Tushka basin to the west, similar to present-day Sobat and White Nile tributaries, respectively. Overall the western tributaries such as those of Tushka basin and Howar lead to the Nile, which was (and still is) the biggest river system in Africa.

israelensis in the tilapia (Oreochromis niloticus) collected from the Nile River, Egypt

The present study was carried out as part of an ongoing general survey for myxosporean parasites infecting tilapias in the River Nile, Egypt. In the present study, 77 Nile tilapia (Oreochromis niloticus) were collected from boat landing sites at Beni-Suef governorate, Egypt and examined for the myxosporean infection. The infection was encountered as a huge number of free spores in the kidney and the spleen. The infection showed a prevalence of 51.9% (40/77) for Myxobolus brachysporus while it was 25.9% (20/77) for Myxobolus israelensis. Mature spores of M. brachysporus were ellipsoidal and measured 8.6 × 13.2 μm. The polar capsules were subcircular with 5–6 filament turns and measured 4.7 × 3.6 μm. Spores of M. israelensis were ellipsoidal in the frontal view and fusiform in the lateral view. Spore measurements were 13.4 μm long and 8.7 μm wide. The polar capsules were elongated with 6–7 filament coils and measured 8.6 × 3.1 μm. The findings presented here proved that tilapia fishes in the Nile River are still suffering from infections with Myxobolus species. Therefore, further studies should be carried out to survey the Myxobolus infection among tilapias under culture conditions to clarify the pathological impacts of this parasite in tilapias aquaculture.