The prohibition of recreational hunting of wild ungulates in Spanish National Parks: Challenges and opportunities

A new regulation has led to the prohibition of recreational hunting on estates located within Spanish National Parks (NPs). Before the ban, eleven NPs in Spain had already reported negative ecological consequences associated with high densities of wild ungulates. The new situation that has occurred after the ban signifies that policies with which to control populations of wild ungulates in NPs, most of which do not have a sufficient natural capacity to regulate populations, depend exclusively on the parks' authorities. The banning of recreational hunting implies a series of social, ecological, economic and logistic challenges. The control of wild ungulate populations in NPs requires: i) the legal basis for culling; ii) social acceptance as regards removing animals and the extractive procedures employed in NPs; iii) the long-term monitoring of wild ungulates and the damages that they cause, and iv) sufficient financial and human resources. A more integrated management and policy plan is, therefore, required, which should be supported by two pillars: i) the sustainability of natural resources and the conservation of functional environments, and ii) providing society with explanations regarding the need to manage wild ungulates. In order to bridge the potential gap between these key pillars, it is important to involve stakeholders in the decision-making processes concerning wild ungulate management. The forthcoming changes in Spanish NPs provide a promising opportunity to make a substantial improvement to wild ungulate management in these protected areas. This management approach could, moreover, serve as an example and be transferred to other protected spaces.

Searching for common patterns in parasite ecology: species and host contributions to beta-diversity in helminths of South African ungulates and fleas of South American rodents

We searched for common patterns in parasite ecology by investigating species and host contributions to the beta-diversity of infracommunities (=assemblages of parasites harboured by a host individual) in helminths of three species of South African ungulates and fleas of 11 species of South American rodents, assuming that a comparison of patterns in distinctly different parasites and hosts would allow us to judge the generality or, at least, commonness of these patterns. We used data on species' composition and numbers of parasites and asked whether (i) parasite species' attributes (life cycle, transmission mode, and host specificity in helminths; possession of sclerotized combs, microhabitat preference, and host specificity in fleas) or their population structure (mean abundance and/or prevalence) and (ii) host characteristics (sex and age) affect parasite and host species' contributions to parasite beta-diversity (SCBD and HCBD, respectively). We found that parasite species' morphological and ecological attributes were mostly not associated with their SCBD. In contrast, parasite SCBD, in both ungulates and rodents, significantly increased with either parasite mean abundance or prevalence or both. The effect of host characteristics on HCBD was detected in a few hosts only. In general, parasite infracommunities' beta-diversity appeared to be driven by variation in parasite species rather than the uniqueness of the assemblages harboured by individual hosts. We conclude that some ecological patterns (such as the relationships between SCBD and parasite abundance/prevalence) appear to be common and do not differ between different host-parasite associations in different geographic regions, whereas other patterns (the relationships between SCBD and parasite species' attributes) are contingent and depend on parasite and host identities.

Direct and Indirect Linkages Between Trace Element Status and Health Indicators - a Multi-tissue Case-Study of Two Deer Species in Denmark

Measuring trace element concentrations in tissue can be a valuable approach to monitor animal health status. Temporal variation in the absorption, transport, and storage of elements between different tissues can, however, complicate the assessment of element-health relationships. Here, we measured concentrations of selected essential (copper (Cu), zinc (Zn), selenium (Se)) and non-essential (arsenic (As), cadmium (Cd), lead (Pb)) trace elements within blood, liver, kidney, and hair of fallow deer (Dama dama; N=20) and red deer (Cervus elaphus; N=21). Using multivariate regression and structural equation models, we estimated direct and indirect linkages between tissue-specific trace element profiles and long- (body condition) and short-term (serum protein biomarkers for acute inflammation, infection, and malnutrition) health indicators. Trace element concentrations varied markedly and were weakly correlated among tissues, with the exception of Se. After accounting for sex- and site-differences in trace element concentrations, body condition of red deer was directly, and positively, associated to trace element status in liver and hair, but not in kidney. For both deer species, trace element status in blood was directly linked to serum protein status with an indirect positive association to deer body condition. For fallow deer, no direct association between trace element status and body condition was detected in any of the tissues, possibly because of elemental homeostasis, and because all individuals were in good clinical health. This study shows that hair can serve as an effective, non-invasive, biomarker in deer health assessments, yet, to fully uncover trace element-health relationships a variety of sample matrices is preferred.

Molecular characterization of Blastocystis and Entamoeba of muskoxen and sheep in Greenland

Molecular characterisation of endobionts that are shared among human and non-human hosts can help shed light on the epidemiology and inform studies that aim to unravel the role of these organisms in health and disease. Two of the most common of shared endobionts include the single-celled intestinal protists Blastocystis and Entamoeba. Here, we present the first known data on genetic diversity and host specificity of these two genera in Greenland. Faecal DNA samples from 243 muskoxen and 44 sheep were submitted to metabarcoding of nuclear small subunit ribosomal DNA. Entamoeba- and Blastocystis-specific sequences were clustered, and consensus sequences were subjected to taxonomic query. Using MinION-based sequencing, near-complete nuclear small subunit ribosomal DNA sequences were obtained from four faecal samples. Of the 243 muskox samples, 180 (74%) and 19 (8%) were positive for Blastocystis and Entamoeba, respectively. Forty (91%) and six (14%) of the 44 sheep samples were positive for Blastocystis and Entamoeba, respectively. Blastocystis subtypes (ST) 10, 14, 21, 24-26, and a novel subtype (ST40) were identified. Colonisation by more than one subtype was common. ST40 was common in muskoxen but limited to Northeast Greenland. Entamoeba bovis and the E. bovis-associated ribosomal lineages (RL) 1 and 8 were found, and three conditional lineages (CL) 3, 4, and 10 were confirmed; CL10 was promoted to RL12. Several novel lineages were identified, all of which were linked to the E. bovis complex. In conclusion, Blastocystis was far more common than Entamoeba and found in approximately three of every four animals; both can be considered common colonisers of large herbivorous mammals in Greenland. Multiple subtypes/lineages of both genera were commonly observed, some of which were novel, but most of which are seen in many other parts of the world.

Anthropogenically driven spatial niche partitioning in a large herbivore assemblage

Understanding how human activity can influence species distributions and spatial niche partitioning between sympatric species is a key area of contemporary ecology. Extirpations of large mammalian populations, the result of a 15-year civil war, within the Gorongosa National Park in Mozambique, have been followed by an extended period of restoration. The species-specific recovery of these populations has provided an ideal system to identify how niche partitioning between coexisting species is altered as a consequence of extreme disturbance events. Here, we aimed to understand how distribution patterns of grazing herbivores, as well as spatial niche overlap between them, changed between the pre- and post-war scenarios. We focused on the following four grazer species: buffalo (Syncerus caffer); sable (Hippotragus niger); waterbuck (Kobus ellipsiprymnus); and zebra (Equus quagga). Using long-term aerial survey data, we quantified range size for each species, as well as spatial niche overlap between each species pair, for pre- and post-war periods. Range size of buffalo and zebra decreased drastically from the pre-war period; with both species inhabiting subsets of their historical distribution in the park. Sable and waterbuck have both colonised historically avoided habitat, with waterbuck doubling their pre-war range size. Spatial overlap between all four grazers pre-war was significantly high, indicating niche similarity; however, this decreased in the post-war period, with some species pairs displaying spatial niche dissimilarity. Our findings highlight how population responses to anthropogenic disturbance can result in significant alterations to species' distributions, with consequences for patterns of niche similarity.

More than an anthropogenic phenomenon: Antimicrobial resistance in ungulates from natural and agricultural environments

Widely considered an anthropogenic phenomenon, antimicrobial resistance (AMR) is a naturally occurring mechanism that microorganisms use to gain competitive advantage. AMR represents a significant threat to public health and has generated criticism towards the overuse of antimicrobial drugs. Livestock have been proposed as important reservoirs for AMR accumulation. Here, we show that assemblages of AMR genes in cattle and ungulates from natural environments (Yellowstone and Rocky Mountain National Parks) are all dominated by genes conferring resistance to tetracyclines. However, cattle feces contained higher proportions of erm(A-X) genes conferring resistance to macrolide antibiotics. Medically important AMR genes differed between cattle and natural ungulates, but cumulatively were more predominant in natural soils. Our findings suggest that the commonly described predominance of tetracycline resistance in cattle feces is a natural phenomenon among multiple ungulate species and not solely a result of antimicrobial drug exposure. Yet, the virtual absence of macrolide resistance genes in natural ungulates suggests that macrolide usage in agriculture may enrich these genes in cattle. Our results show that antimicrobial use in agriculture may be promoting a potential reservoir for specific types of AMR (i.e., macrolide resistance) but that a significant proportion of the ungulate resistome appears to have natural origins.

Faecal metabarcoding provides improved detection and taxonomic resolution for non-invasive monitoring of gastrointestinal nematode parasites in wild moose populations

BACKGROUND

Although wild ungulate populations are heavily monitored throughout Europe, we understand little of how parasites affect population dynamics, and there is no systematic, long-term monitoring of parasite diversity and parasite loads. Such monitoring is in part hampered by a lack of time- and cost-effective assay methodologies with high sensitivity and good taxonomic resolution. DNA metabarcoding has been successfully used to characterize the parasitic nemabiome with high taxonomic resolution in a variety of wild and domestic hosts. However, in order to implement this technique in large-scale, potentially non-invasive monitoring of gastrointestinal parasitic nematodes (GIN), protocol optimization is required to maximize biodiversity detection, whilst maintaining time- and cost-effectiveness.

METHODS

Faecal samples were collected from a wild moose population and GIN communities were characterized and quantified using both parasitological techniques (egg and larva counting) and DNA metabarcoding of the ITS2 region of rDNA. Three different isolation methods were compared that differed in the volume of starting material and cell lysis method.

RESULTS

Similar nematode faunas were recovered from all samples using both parasitological and metabarcoding methods, and the approaches were largely congruent. However, metabarcoding assays showed better taxonomic resolution and slightly higher sensitivity than egg and larvae counts. The metabarcoding was not strictly quantitative, but the proportion of target nematode sequences recovered was correlated with the parasitologically determined parasite load. Species detection rates in the metabarcoding assays were maximized using a DNA isolation method that included mechanical cell disruption and maximized the starting material volume.

CONCLUSIONS

DNA metabarcoding is a promising technique for the non-invasive, large-scale monitoring of parasitic GINs in wild ungulate populations, owing to its high taxonomic resolution, increased assay sensitivity, and time- and cost-effectiveness. Although metabarcoding is not a strictly quantitative method, it may nonetheless be possible to create a management- and conservation-relevant index for the host parasite load from this data. To optimize the detection rates and time- and cost-effectiveness of metabarcoding assays, we recommend choosing a DNA isolation method that involves mechanical cell disruption and maximizes the starting material volume.

Parasitic strongyle nemabiome communities in wild ruminants in Sweden

Background

Wildlife hosts may serve as reservoirs for strongyles, which can be transmitted to domestic livestock. Therefore, studies evaluating nemabiome compositions in wildlife ruminants are of great use in assessing the possibility of transmission of important nematode pathogens to domestic sheep in Sweden.

Methods

First, fecal samples were collected from roe deer (n = 125), fallow deer (n = 106), red deer (n = 18) and mouflon (n = 13) in south central Sweden during the hunting season in 2019. Second, after fecal examination samples were cultured and the larvae were harvested, followed by DNA extractions. Third, all samples were barcoded and processed for sequence analysis on the PacBio platform. Finally, bioinformatic sequence analysis was conducted with DADA2, while species diversity and richness, as well as interactions between the different hosts, were calculated and analyzed in R.

Results

Nematode ITS2 sequences were found in 225 of 262 (86%) samples. In total, 31 taxa were identified, among which 26 (86%) to the species level. These were found in different combinations, among which 24 (77%) occurred in roe deer, 19 (61%) in fallow deer, 20 (65%) in red deer and 10 (32%) in mouflon. Five of the species found are known to be associated with livestock (Chabertia ovina, Haemonchus contortus, Oesophagostomum venulosum, Teladorsagia circumcincta and Trichostrongylus axei). However, in the present study the relative abundance and prevalence of most of these species were low. The most striking exception was T. axei, which was relatively abundant in all wildlife hosts. Mostly a wide range of wildlife specific nematodes such as Ostertagia leptospicularis and Spiculopteragia spp. were identified including the invasive nematode Spiculopteragia houdemeri, which was found for the first time in red deer, fallow deer, and mouflon in Sweden. The difference in the number of shared species between mouflon and all cervids (n = 6) was less than among all three cervids (n = 8).

Conclusion

In this study, we investigated the community structure of parasitic intestinal nematodes in four wildlife hosts, and we found that the majority of the parasite species identified were wildlife specific. We also found a new, potentially invasive species not reported before. After comparing the nemabiome of the wildlife hosts in this study with a previous study in sheep from the same geographical region, we conclude that the horizontal transmission potential appears to be relatively low. Still, cross-infections of nematodes between game and sheep cannot be completely ignored.

Graphical Abstract

A high-risk carbapenem-resistant Pseudomonas aeruginosa clone detected in red deer (Cervus elaphus) from Portugal

Pseudomonas aeruginosa is a ubiquitous bacterium, successfully exploiting a variety of environmental niches due to its remarkable metabolic versatility. The World Health Organization classifies P. aeruginosa as a "priority pathogen" due to its a great ability to overcome the action of antimicrobials, including carbapenems. Hitherto, most studies have focused on clinical settings from humans, but much less on animal and environmental settings, particularly on wildlife. In this work, we report the isolation of a carbapenem-resistant Pseudomonas aeruginosa strain recovered from the faeces of a red deer adult female sampled in a humanized area. This isolate was obtained during a nationwide survey on antimicrobial resistance in wildlife aimed to determine the occurrence of carbapenem-resistant bacteria among 181 widely distributed wild ungulates. This P. aeruginosa isolate was found to be a high-risk clone, belonging to the sequence type (ST) 274. The genomic analysis of P. aeruginosa isolate UP4, classified this isolate as belonging to serogroup O3, which was also found to harbour the genes bla_PAO, bla_PDC-24, bla_OXA-486 (encoding resistance to beta-lactams), aph(3')-IIb (aminoglycosides resistance), fosA (fosfomycin resistance) and catB7 (chloramphenicol resistance). Antimicrobial susceptibility screening, according to EUCAST, showed resistance to imipenem and intermediate resistance to meropenem and doripenem. To our knowledge, this is the first description of carbapenem-resistant P. aeruginosa in deer in Europe. Our results highlight the importance of wild ungulates either as victims of human activity or amplifiers of AMR, either way with potential impacts on animal, human and ecosystem health, since excretion of AMR bacteria might directly or indirectly contaminate other animals and the surrounding environment, perpetuating the spill-over and chain dissemination of AMR determinants.

FMD virus spillover from domestic livestock caused outbreak in captive wild ungulates: First report from Pakistan

The potential spillover of foot and mouth disease (FMD) virus at the wildlife-livestock interface is mainly responsible for the outbreaks in captive wild ungulates. The current study was planned to investigate an FMD outbreak in the wild ungulate species in the Jallo Wildlife Park and breeding facility, Lahore, Pakistan from Mar 2021- Jun 2021. The disease was confirmed based on ELISA through the detection of antibodies against the non-structural protein of FMD virus and typical clinical signs of oral and feet lesions, and even partial or complete hoof shedding in severe cases. To investigate the possible cause of FMD spillover and its pattern, a series of interviews were conducted with wildlife practitioners, animal handlers, and the local veterinarians in villages adjacent to the park. The data revealed neither vaccination nor any FMD outbreak in the last 10 years. The epidemic curve and time-series analysis showed a mixed outbreak characterized by the introduction of disease and then propagative spread from infected to susceptible animals. After the first reports of clinical signs in Blackbuck, Urial and Mouflon sheep were infected while in the end, the cases were reported from the enclosures of Sambar deer and Spotted deer. The morbidity rate among all the wild ungulate species was 92% and the mean mortality rate was 27%. The study concluded that possible sources for primary disease incidence might be animal handlers having FMD infected animals in their houses and transport vehicles coming from adjacent disease-affected villages. For the disease spread between enclosures, another possibility of wind-borne FMD virus spread could also be considered. This is the first report regarding the FMD outbreak and its spillover pattern in captive wild ungulates in Pakistan. These findings will be helpful in understanding the importance of wildlife livestock interface in FMD transmission and to design effective strategies to control the disease.

Landscape REE anomalies and the cause of geophagy in wild animals at kudurs (mineral salt licks) in the Sikhote-Alin (Primorsky Krai, Russia)

To test the "rare earth" hypothesis of geophagy, geological and hydrogeochemical studies unparalleled anywhere in the world were carried out at kudurs (salt licks) in two districts in the Primorsky Krai, Russia. The mineral and chemical compositions of geophagic earth consumed by animals, the chemical composition of surface waters and vegetation, and the chemical composition of biological tissues of red deer (Cervus elaphus) were studied in this research. It was found that ultra-fresh surface and fontinal waters in the studied areas contain anomalously high concentrations of rare earth elements (REE), the sums of which exceeded the average values in the Primorsky Krai and worldwide by tenfold, and more. The presence of landscape REE anomalies is confirmed by elevated concentrations of these elements in vegetation. Using electron microscopy, it was determined that the sources of REE in landscape components are rocks containing secondary, readily soluble, REE minerals (hydrophosphates and fluorocarbonates). The study of the chemical composition of animal tissues showed the presence of significant concentrations of heavy REE (HREE) in the blood and brain, which indirectly indicates a high probability of animals developing stress reactions against the background REE-elementosis. Eaten earthy substances in both areas are represented by mixtures of smectite clays and zeolites with high ion-exchange properties. In the digestive tract of animals, such sorbents actively interact with the biological electrolyte, saturating it with sodium ions and absorbing HREE. The main meaning of geophagy is regulation of the concentration and proportion of REE in the body. Sometimes it manifests itself in intake of significant amounts of Na.

Leveraging homologies for cross-species plasma proteomics in ungulates using data-independent acquisition

The collection of blood plasma is minimally invasive, and the fluid is a rich source of proteins for biomarker studies in both humans and animals. Plasma protein analysis by mass spectrometry (MS) can be challenging, though modern data acquisition strategies, such as sequential window acquisition of all theoretical fragment ion spectra (SWATH), enable reproducible quantitation of hundreds of proteins in non-depleted plasma from humans and laboratory model animals. Although there is strong potential to enhance veterinary and translational research, SWATH-based plasma proteomics in non-laboratory animals is virtually non-existent. One limitation to date is the lack of comprehensively annotated genomes to aid protein identification. The current study established plasma peptide spectral repositories for sheep and cattle that enabled quantification of over 200 proteins in non-depleted plasma using SWATH approach. Moreover, bioinformatics pipeline was developed to leverage inter-species homologies to enhance the depth of baseline libraries and plasma protein quantification in bovids. Finally, the practical utility of using bovid libraries for SWATH data extraction in taxonomically related non-domestic ungulate species (giraffe) has been demonstrated. SIGNIFICANCE: Ability to quickly generate comprehensive spectral libraries is limiting the applicability of data-independent acquisition, such as SWATH, to study proteomes of non-laboratory animals. We describe an approach to obtain relatively shallow foundational plasma repositories from domestic ruminants and employ homology searches to increase the depth of data, which we subsequently extend to unsequenced ungulates using SWATH method. When applied to cross-species proteomics, the number of proteins quantified by our approach far exceeds what is traditionally used in plasma protein tests.

Roads constrain movement across behavioural processes in a partially migratory ungulate

BACKGROUND

Human disturbance alters animal movement globally and infrastructure, such as roads, can act as physical barriers that impact behaviour across multiple spatial scales. In ungulates, roads can particularly hamper key ecological processes such as dispersal and migration, which ensure functional connectivity among populations, and may be particularly important for population performance in highly human-dominated landscapes. The impact of roads on some aspects of ungulate behaviour has already been studied. However, potential differences in response to roads during migration, dispersal and home range movements have never been evaluated. Addressing these issues is particularly important to assess the resistance of European landscapes to the range of wildlife movement processes, and to evaluate how animals adjust to anthropogenic constraints.

METHODS

We analysed 95 GPS trajectories from 6 populations of European roe deer (Capreolus capreolus) across the Alps and central Europe. We investigated how roe deer movements were affected by landscape characteristics, including roads, and we evaluated potential differences in road avoidance among resident, migratory and dispersing animals (hereafter, movement modes). First, using Net Squared Displacement and a spatio-temporal clustering algorithm, we classified individuals as residents, migrants or dispersers. We then identified the start and end dates of the migration and dispersal trajectories, and retained only the GPS locations that fell between those dates (i.e., during transience). Finally, we used the resulting trajectories to perform an integrated step selection analysis.

RESULTS

We found that roe deer moved through more forested areas during the day and visited less forested areas at night. They also minimised elevation gains and losses along their movement trajectories. Road crossings were strongly avoided at all times of day, but when they occurred, they were more likely to occur during longer steps and in more forested areas. Road avoidance did not vary among movement modes and, during dispersal and migration, it remained high and consistent with that expressed during home range movements.

CONCLUSIONS

Roads can represent a major constraint to movement across modes and populations, potentially limiting functional connectivity at multiple ecological scales. In particular, they can affect migrating individuals that track seasonal resources, and dispersing animals searching for novel ranges.

COVID-19 related travel restrictions prevented numerous wildlife deaths on roads: A comparative analysis of results from 11 countries

Millions of wild animals are killed annually on roads worldwide. During spring 2020, the volume of road traffic was reduced globally as a consequence of the COVID-19 pandemic. We gathered data on wildlife-vehicle collisions (WVC) from Czechia, Estonia, Finland, Hungary, Israel, Norway, Slovenia, Spain, Sweden, and for Scotland and England within the United Kingdom. In all studied countries WVC statistics tend to be dominated by large mammals (various deer species and wild boar), while information on smaller mammals as well as birds are less well recorded. The expected number of WVC for 2020 was predicted on the basis of 2015-2019 WVC time series representing expected WVC numbers under normal traffic conditions. Then, the forecasted and reported WVC data were compared. The results indicate varying levels of WVC decrease between countries during the COVID-19 related traffic flow reduction (CRTR). While no significant change was determined in Sweden, where the state-wide response to COVID-19 was the least intensive, a decrease as marked as 37.4% was identified in Estonia. The greatest WVC decrease, more than 40%, was determined during the first weeks of CRTR for Estonia, Spain, Israel, and Czechia. Measures taken during spring 2020 allowed the survival of large numbers of wild animals which would have been killed under normal traffic conditions. The significant effects of even just a few weeks of reduced traffic, help to highlight the negative impacts of roads on wildlife mortality and the need to boost global efforts of wildlife conservation, including systematic gathering of roadkill data.

Neophobia in 10 ungulate species-a comparative approach

ABSTRACT

Neophobia (the fearful reaction to novel stimuli or situations) has a crucial effect on individual fitness and can vary within and across species. However, the factors predicting this variation are still unclear. In this study, we assessed whether individual characteristics (rank, social integration, sex) and species socio-ecological characteristics (dietary breadth, group size, domestication) predicted variation in neophobia. For this purpose, we conducted behavioral observations and experimental tests on 78 captive individuals belonging to 10 different ungulate species-an ideal taxon to study inter-specific variation in neophobia given their variety in socio-ecological characteristics. Individuals were tested in their social groups by providing them with familiar food, half of which had been positioned close to a novel object. We monitored the individual latency to approach and eat food and the proportion of time spent in its proximity. Using a phylogenetic approach and social network analyses, we showed that across ungulate species neophobia was higher in socially more integrated individuals, as compared to less integrated ones. In contrast, rank and sex did not predict inter-individual differences in neophobia. Moreover, species differed in their levels of neophobia, with Barbary sheep being on average less neophobic than all the other study species. As group size in Barbary sheep was larger than in all the other study species, these results support the hypothesis that larger group size predicts lower levels of neophobia, and confirm ungulates as a highly promising taxon to study animal behavior and cognition with a comparative perspective.

SIGNIFICANCE STATEMENT

In several species, individuals may respond fearfully to novel stimuli, therefore reducing the risks they may face. However, it is yet unclear if certain individuals or species respond more fearfully to novelty. Here, we provided food to 78 individual ungulates with different characteristics (e.g., sex, rank, social integration, group size, domestication, dietary breadth) in different controlled conditions (e.g., when food was close to novel or to familiar objects). Across species, we found that socially integrated individuals responded more fearfully in all species. Moreover, being in larger groups decreased the probability of fearfully responding to novelty.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s00265-021-03041-0.

Response of reindeer mating time to climatic variability

Background

The breeding time of many species has changed over the past 2–3 decades in response to climate change. Yet it is a key reproductive trait that affects individual's parturition time and reproductive success, and thereby population dynamics. In order to predict how climate change will affect species’ viability, it is crucial to understand how species base their reproductive efforts on environmental cues.

Results

By using long-term datasets of mating behaviours and copulation dates recorded since 1996 on a semi-domesticated reindeer population, we showed that mating time occurred earlier in response to weather conditions at different key periods in their annual breeding cycle. The mating time occurred earlier following a reducing snow cover in early spring, colder minimum temperatures in the last 2 weeks of July and less precipitation in August-September.

Conclusions

The mediated effect of a reduced snow cover in early spring on improving individuals’ pre-rut body weight through a better availability of late winter food and reduced costs of locomotion on snow would explain that mating time has occurred earlier overtime. A lower level of insect harassment caused by colder maximum temperatures in July might have caused an advance in mating time. Less precipitation in August-September also caused the mating time to occur earlier, although the direct effects of the last two weather variables were not mediated through the pre-rut body weight of individuals. As such, the causal effects of weather conditions on seasonal timing of animals are still unclear and other mechanisms than just body weight might be involved (e.g. socio-biological factors). The plastic response of reindeer mating time to climatic variability, despite supplemental feeding occurring in late April, demonstrated that environmental factors may have a greater influence on reproductive outputs than previously thought in reindeer.

Quality and use of habitat patches by wild boar (Sus scrofa) along an urban gradient

Expansion and urbanization process of wild boar (Sus scrofa) populations lead to serious human-wildlife conflicts in many cities, e.g. in Budapest, Hungary. In this study we evaluated the penetration potential of the species into the inner urban areas by identifying the occurrence of wild boar and the quality of the habitat patches for them along an urban gradient from the periphery towards the centre. Wild boar rooting intensity, shrub cover and the availability of woody species giving favourable food to wild boar were measured in four different habitat patches. The availability of hiding shrub patches was much higher in the outer areas than in the inner ones. Similarly, the proportion of shrub and tree species providing favourable food for wild boar decreased towards the centre. Accordingly, we found rooting only in two areas nearer to the city boundary. Based on our results at the peripheral areas permanent presence of wild boar in near-natural habitats should be expected, but not in the inner green zones. We recommend to monitor the urban wild boar presence and evaluate the quality of urban green patches to mitigate problems related to the wild boars.

Wild boar as a reservoir of antimicrobial resistance

Antimicrobial resistance (AMR) has been recognized as an emerging and growing problem worldwide. Knowledge concerning AMR bacteria circulating in wildlife is currently limited, although it could provide important insights into AMR emergence and persistence. Across Europe, wild boar (Sus scrofa) populations have dramatically increased their distribution and number over the last decades. In the context of AMR dynamics, wild boar is a perfect model species to unveil the emergence, spread and persistence of AMR at the human-livestock-wildlife interface. Here, we summarize the current knowledge on the importance of wild boar as a reservoir of antimicrobial resistant bacteria, and its possible use as sentinel species for surveillance. Analyses of available data showed a rising interest on this topic in the last years, highlighting the growing concern on wild boar potential role as AMR facilitator and it is foreseen that the importance of antimicrobial resistance research in wild boar will continue to increase in years to come. Available studieshave been focused on specific bacterial species, particularlyE. coli, Salmonellaspp. andEnterococcusspp., bioindicators of AMR, and have been mainly conducted in three countries: Spain, Portugal and Germany.Strikingly, AMR surveillance in wild boar is uneven and still poorly allocated as many wild boar high-density countries do not yet have publications on the topic.Overall, accumulated data showed thatwild boar are carriers of antimicrobial resistant bacteria, withvariation in the prevalence of bacterial species and thepercentage of resistance to different antibiotics. Thelack of harmonized sampling and testing protocols makes it difficult to compare AMR in wild boar.The need for the establishment of standardised protocols keen to provide quantitative comparable data is highlighted. We finally suggest the long-term monitoring of wild boar as a sentinel species for AMR surveillance in order to inform public policies on this topic.

Investigating the effects of management practice on mammalian co-occurrence along the West Coast of South Africa

The subtle and cascading effects (e.g., altered interspecific interactions) that anthropogenic stressors have on local ecological assemblages often go unnoticed but are concerning given their importance in ecosystem function. For example, elimination of buffalo from the Serengeti National Park is suggested to have driven increased abundance of smaller antelope as a result of release from competition. The perceived low abundance of small antelope in the contractual Postberg section of the West Coast National Park (the park) has been an ongoing management concern which has been anecdotally attributed to predation by a mesopredator (the caracal, Caracal caracal). However, we hypothesized that the historical overstocking, and consequent overgrazing by larger-bodied managed ungulates would influence small antelope abundance. Using camera traps, we investigated species co-occurrence and temporal activity between small antelope, managed ungulates and caracals in Postberg as well as another part of the park (Langebaan) and a farm outside of the park. Results suggest that small antelope and managed ungulates have a high degree of temporal overlap (Δ = 0.74, 0.79 and 0.86 for the farm, Langebaan and Postberg respectively), while temporal partitioning between small antelope and caracal is apparent (Δ = 0.59). Further, small antelope and managed ungulates appear to occur independently of one another (SIF = 0.91-1 across areas). Managed ungulates were detected almost three times more frequently on fallow lands when compared to the more vegetated sites within the park suggesting that segregated food/cover resources allow for independent occurrence. Small antelope had a much higher probability of occurrence outside of the protected area (e.g., ψ = 0.192 and 0.486 for steenbok at Postberg, Langebaan compared to 0.841 on the farm), likely due to less variable (more intact) habitat outside of the protected area. There is not sufficient evidence to currently warrant management intervention for predators. The small size of the protected area provides limited scope for spatial replication thus reducing possibilities to infer the cause and effect for complex interactions (which would historically have taken place over much larger areas) with negative implications for adaptive management. We recommend continued monitoring over multiple seasons and a wider area to determine the spatial information requirements to inform management of small protected areas.

The olfactory secretome varies according to season in female sheep and goat

Background

Small ungulates (sheep and goat) display a seasonal breeding, characterised by two successive periods, sexual activity (SA) and sexual rest (SR). Odours emitted by a sexually active male can reactivate the ovulatory cycle of anoestrus females. The plasticity of the olfactory system under these hormonal changes has never been explored at the peripheral level of odours reception. As it was shown in pig that the olfactory secretome (proteins secreted in the nasal mucus) could be modified under hormonal control, we monitored its composition in females of both species through several reproductive seasons, thanks to a non-invasive sampling of olfactory mucus. For this purpose, two-dimensional gel electrophoresis (2D-E), western-blot with specific antibodies, MALDI-TOF and high-resolution (nano-LC-MS/MS) mass spectrometry, RACE-PCR and molecular modelling were used.

Results

In both species the olfactory secretome is composed of isoforms of OBP-like proteins, generated by post-translational modifications, as phosphorylation, N-glycosylation and O-GlcNAcylation. Important changes were observed in the olfactory secretome between the sexual rest and the sexual activity periods, characterised in ewe by the specific expression of SAL-like proteins and the emergence of OBPs O-GlcNAcylation. In goat, the differences between SA and SR did not come from new proteins expression, but from different post-translational modifications, the main difference between the SA and SR secretome being the number of isoforms of each protein. Proteomics data are available via ProteomeXchange with identifier PXD014833.

Conclusion

Despite common behaviour, seasonal breeding, and genetic resources, the two species seem to adapt their olfactory equipment in SA by different modalities: the variation of olfactory secretome in ewe could correspond to a specialization to detect male odours only in SA, whereas in goat the stability of the olfactory secretome could indicate a constant capacity of odours detection suggesting that the hallmark of SA in goat might be the emission of specific odours by the sexually active male. In both species, the olfactory secretome is a phenotype reflecting the physiological status of females, and could be used by breeders to monitor their receptivity to the male effect.

Goats distinguish between positive and negative emotion-linked vocalisations

Background

Evidence from humans suggests that the expression of emotions can regulate social interactions and promote coordination within a group. Despite its evolutionary importance, social communication of emotions in non-human animals is still not well understood. Here, we combine behavioural and physiological measures, to determine if animals can distinguish between vocalisations linked to different emotional valences (positive and negative). Using a playback paradigm, goats were habituated to listen to a conspecific call associated with positive or negative valence (habituation phase) and were subsequently exposed to a variant of the same call type (contact call) associated with the opposite valence (dishabituation phase), followed by a final call randomly selected from the habituation phase as control (rehabituation phase). The effects of the calls on the occurrence of looking and cardiac responses in these phases were recorded and compared.

Results

We found that when the valence of the call variant changed, goats were more likely to look at the source of the sound, indicating that they could distinguish calls based on their valence. Heart rate was not affected by the valence of the calls played, whereas heart-rate variability tended to be higher in the habituation and rehabituation phases, when positive calls were played compared to negative ones. Together, the behavioural and physiological measures provide evidence suggesting, first, that goats are able to distinguish call variants based on their valence, and second, that goat behaviour and cardiac responses are affected by call valence.

Conclusion

This study indicates that auditory modalities are a potent means to communicate emotions in non-human animals. These findings can contribute to our understanding of the evolution of emotion perception in non-human animals.

The effect of sex, age, and location on carnivory in Utah black bears (Ursus americanus)

Ungulates are important to the diet of bears because they are high in protein, and the level of dietary protein strongly influences bear size. The size a bear obtains as an adult influences important life history characteristics, such as age of reproduction and reproductive success; therefore, it is important to know what foods are available to bears and how they are utilizing them. We tested hypotheses concerning the effect of age, sex, and location on black bear carnivory. We collected hair and vestigial premolar teeth from 49 Utah black bears, Ursus americanus according to the Utah Division of Wildlife Resources hunt unit. Hunt units differed in habitat quality and local ungulate density. We analyzed a vestigial premolar for the age of the bears and used analysis of the δ¹³C and δ¹⁵N values of the hairs of each bear to infer the degree of carnivory. δ¹⁵N of black bear hairs was positively correlated with increased availability of ungulates. There was a positive relationship between the δ¹⁵N of bear hairs and age in hunt units with the highest ungulate densities only. The δ¹⁵N and δ¹³C of black bear hairs were positively correlated, suggesting that bears are more carnivorous at higher altitudes. This study demonstrates the value of stable isotope analysis in understanding the feeding ecology of bears over broad geographic ranges. It demonstrates that ungulate availability is important to the feeding ecology of black bears in the Intermountain West.

Human altered disturbance patterns and forest succession: impacts of competition and ungulate herbivory

Human activities are altering patterns of ungulate herbivory and wildfire regimes globally with large potential impacts on plant community succession and ecosystem resilience. Aspen (Populus tremuloides) is a keystone species which co-exists with conifer species across temperate forests in North America. Aspen sucker regeneration which is the foundation of aspen-conifer forests succession is often a targeted food source by multiple ungulate species. Using a region-wide exclosure network across a broad gradient of aspen-conifer overstory abundance, we empirically tested the effects of ungulate herbivory and conifer competition (that increases with fire suppression), on the regeneration and recruitment of aspen forests over a 4-year period. The study results indicate that ungulate herbivory and increasing abundance of overstory conifers dramatically reduced aspen regeneration and recruitment success. The average height of aspen suckers exposed to ungulate herbivory was 72% shorter than aspen suckers in fenced plots and resulted in 24% less recruitment. There was a 9% decrease in aspen recruitment and 12% decrease in average aspen height with every 20% increase in overstory conifer density. Aspen suckers were most vulnerable to herbivory at 70 cm height, with the probability of herbivory decreasing under 50 cm or above 90 cm. Steep slope angles and higher winter precipitation increased aspen regeneration and recruitment success. Reduction in aspen recruitment in response to ungulate herbivory and competition by conifers may result in loss of biodiversity, altered forest function and loss of key ecosystem services because of the important role that aspen plays in facilitating forest succession and biodiversity.

The Importance of Reproduction for the Conservation of Slow-Growing Animal Populations

Both survival and reproduction are important fitness components, and thus critical to the viability of wildlife populations. Preventing one death (survival) or contributing one newborn (reproduction), has arguably the same effect on population dynamics-in each instance the population grows or is maintained by one additional member. However, for the conservation of slow-growing animal populations, the importance of reproduction is sometimes overlooked when evaluating wildlife management options. This has to do with the use of demographic sensitivity analyses, which quantify the relative contribution of vital rates to population growth. For slow-growing populations, the results of such analyses typically show that growth rates are more sensitive to changes in survival than to equal proportional changes in reproduction. Consequently, for slow-growing taxa, survival has been labelled a better fitness surrogate than reproduction. However, such a generalization, derived from conventional sensitivity analyses, is based on flawed approaches, such as omitting appropriate scaling of vital rates, and sometimes misinterpretations. In this chapter, I make the case that for the conservation of slow-growing species the role of reproduction is considerably greater than conventional sensitivity analyses would suggest. This is illustrated by case studies on wildlife populations that underscore the importance of reproduction for the conservation of slow-growing birds, ungulates, carnivores, and cetaceans.

The social network structure of a semi-free roaming European bison herd (Bison bonasus)

The use of social network analysis to better understand animal behaviour has led to an increase in the number of studies on this topic, particularly for species management and conservation as well as the welfare of captive animals. The current knowledge of social organization in the European bison (Bison bonasus) is still largely based on descriptions of group compositions, most of which were obtained during opportunistic field observations. However, the numerous conservation programs for this species can only implement effective management decisions after the analysis of its social structures. For instance, the removal of a key individual can disturb the social stability of a group and thus indirectly affect the fitness of group members. This is the first study that uses social network analysis to examine the social structure of a semi-free ranging bison herd (N = 14). Closest neighbour associations are used to calculate the eigenvector centrality and individual social strength of each animal. These two indices are combined after a principal component analysis (PCA) to form the Sociability variable, which was then tested for correlations with age, dominance rank, number of matrilines and reproductive status (lactating vs non-lactating). Results reveal strong group cohesion, with a close association of individuals belonging to the same matriline within the herd. The cumulative distribution of the eigenvector centralities follows a linear function, meaning that no individual has a highly central position compared to its congeners. Finally, a high Sociability value was not correlated to age, dominance rank or number of matrilines, but was dependent on the reproductive status of females. These results indicate the necessity to consider the social welfare of animals, for instance by taking matrilineal relationships into account when making bison groups management decisions.

Temporal patterns of ungulate herbivory and phenology of aspen regeneration and defense

Ungulate herbivory can create strong top-down effects on forest recruitment, especially after fire. Defense strategies of tree species against ungulate herbivory include escape through vertical growth and resistance through the production of defense compounds. Using a four-way fence design and camera traps we characterized the differential impacts of ungulate herbivores (deer, elk, cattle) on aspen forest recruitment and plant defense responses and how they vary depending on the timing of herbivory. Aspen height growth was greatest between June and August and ungulate use of aspen was highest in July and August. Three years after fire, height of aspen differed among fence treatments with full ungulate exclusion > deer-only plots > native ungulate plots > fenceless plots: 108 ± 4 cm, 94 ± 4 cm, 89 ± 4 cm, and 65 ± 4 cm, respectively. Fenceless plots had the highest rates of removal of apical meristems by the end of 2014 and 2015 (61% and 53%, respectively). Native ungulate plots, and deer-only plots both had similar removal of apical meristems in 2014 (37% and 39%, respectively). The highest phenolic glycoside concentrations were associated with an 80% reduction in meristem removal and four-fold greater aspen height by the end of summer. Low nitrogen was associated with an 86% reduction in apical meristem removal and threefold greater aspen height. In conclusion, our study suggests that high ungulate abundance can have detrimental impacts on forest recruitment and that high aspen defense chemistry and lower leaf N deters ungulate herbivory, especially in the late summer.

Protected areas' effectiveness under climate change: a latitudinal distribution projection of an endangered mountain ungulate along the Andes Range

BACKGROUND

Climate change is one of the greatest threats to biodiversity, pushing species to shift their distribution ranges and making existing protected areas inadequate. Estimating species distribution and potential modifications under climate change are then necessary for adjusting conservation and management plans; this is especially true for endangered species. An example of this issue is the huemul (Hippocamelus bisulcus), an endemic endangered deer from the southern Andes Range, with less than 2,000 individuals. It is distributed in fragmented populations along a 2,000 km latitudinal gradient, in Chile and Argentina. Several threats have reduced its distribution to <50% of its former range.

METHODS

To estimate its potential distribution and protected areas effectiveness, we constructed a species distribution model using 2,813 huemul presence points throughout its whole distribution range, together with 19 bioclimatic layers and altitude information from Worldclim. Its current distribution was projected for years 2050 and 2070 using five different Global Climate Models estimated for scenarios representing two carbon Representative Concentration Routes (RCP)-RCP4.5 and RCP6.0.

RESULTS

Based on current huemul habitat variables, we estimated 91,617 km2 of suitable habitat. In future scenarios of climate change, there was a loss of suitable habitat due to altitudinal and latitudinal variation. Future projections showed a decrease of 59.86-60.26% for the year 2050 and 58.57-64.34% for the year 2070 according to RCP4.5 and RCP6.0, respectively. Protected areas only covered only 36.18% of the present distribution, 38.57-34.94% for the year 2050 and 30.79-31.94% for 2070 under climate change scenarios.

DISCUSSION

Modeling current and future huemul distributions should allow the establishment of priority conservation areas in which to focus efforts and funds, especially areas without official protection. In this way, we can improve management in areas heavily affected by climate change to help ensure the persistence of this deer and other species under similar circumstances worldwide.

Between-population differences in the genetic and maternal components of body mass in roe deer

Background

Understanding the genetic and environmental mechanisms governing variation in morphology or phenology in wild populations is currently an important challenge. While there is a general consensus that selection is stronger under stressful conditions, it remains unclear whether the evolutionary potential of traits should increase or decrease with increasingly stressful conditions. Here, we investigate how contrasting environmental conditions during growth may affect the maternal and genetic components of body mass in roe deer, the most abundant and widespread wild ungulate in Western Europe. Body mass is a key life history trait that strongly influences both survival and reproductive performance in large herbivores. We used pedigrees and animal models to determine the variance components of juvenile and adult winter body mass in two populations experiencing contrasting early-life conditions.

Results

Our analyses showed that roe deer at Chizé, where habitat was poor and unpredictable, exhibited very low genetic variance in juvenile body mass. Instead, variance in mass was mainly driven by among-cohort differences in early-life conditions and maternal environment. In contrast, roe deer at Bogesund, where resource availability during the critical period of fawn rearing was higher, displayed a substantial level of genetic variance in body mass. We discuss the potential role of past demography and viability selection on fawn body mass on the erosion of genetic variance in the poor habitat.

Conclusions

Our study highlights the importance of accounting for both spatial (i.e. between-population variation) and temporal (i.e. cohort variation) heterogeneity in environmental conditions, especially in early life, to understand the potential for adaptive responses of wild populations to selection.

Electronic supplementary material

The online version of this article (10.1186/s12862-018-1154-9) contains supplementary material, which is available to authorized users.

Understanding climate's influence on the extinction of Oreopithecus (late Miocene, Tusco-Sardinian paleobioprovince, Italy)

Despite its long history of scientific study, the causes underlying the extinction of the insular hominoid Oreopithecus bambolii are still a matter of ongoing debate. While some authors consider intense tectonism and invading species the cause of its extinction ca. 6.7 Ma, others propose climatic change as the main contributing factor. We rely on long-term patterns of tooth wear and hypsodonty of the Baccinello and Fiume Santo herbivore-faunas to reconstruct changes in habitat prior to, during and after the extinction. While a mosaic of habitats was represented in Baccinello V1 (as shown by a record of browsers, mixed feeders and species engaged in grazing), more closed forests (higher proportion of browsers, shortage of mixed feeders and lack of grazers) characterised Baccinello V2. Finally, there was a partial loss of canopy cover and development of open-patches and low-abrasive grasses in Baccinello V3 (as denoted by new records of taxa involved in grazing)-although still dominated by a forested habitat (since browse was a component in all diets). Our results provide evidence for two perceptible shifts in climate, one between 8.1 and 7.1 Ma and other ca. 6.7 Ma, though this latter was not drastic enough to lead to intensive forest loss, substantially alter the local vegetation or affect Oreopithecus lifestyle-especially if considering the growing evidence of its versatile diet. Although the disappearance of Oreopithecus is complex, our data reject the hypothesis of environmental change as the main factor in the extinction of Oreopithecus and Maremma fauna. When our results are analysed together with other evidence, faunal interaction and predation by invading species from mainland Europe seems to be the most parsimonious explanation for this extinction event. This contrasts with European hominoid extinctions that were associated with major climatic shifts that led to environmental uniformity and restriction of the preferred habitats of Miocene apes.

Pre-implantation Development of Domestic Animals

During the first days following fertilization, cells of mammalian embryo gradually lose totipotency, acquiring distinct identity. The first three lineages specified in the mammalian embryo are pluripotent epiblast, which later gives rise to the embryo proper, and two extraembryonic lineages, hypoblast (also known as primitive endoderm) and trophectoderm, which form tissues supporting development of the fetus in utero. Most of our knowledge regarding the mechanisms of early lineage specification in mammals comes from studies in the mouse. However, the growing body of evidence points to both similarities and species-specific differences. Understanding molecular and cellular mechanisms of early embryonic development in nonrodent mammals expands our understanding of basic mechanisms of differentiation and is essential for the development of effective protocols for assisted reproduction in agriculture, veterinary medicine, and for biomedical research. This review summarizes the current state of knowledge on key events in epiblast, hypoblast, and trophoblast differentiation in domestic mammals.

Browse silage as potential feed for captive wild ungulates in southern Africa: A review

The objective of the review was to assess the potential of indigenous browse trees as sustainable feed supplement in the form of silage for captive wild ungulates. Several attempts to use silage as feed in zoos in temperate regions have been conducted with success. Information on silage from the indigenous browse trees preferred by wild ungulates in southern Africa is scanty. The use of silage from the browse trees is of interest as it has potential to reduce or replace expensive feed sources (pellets, fruits and farm produce) currently offered in southern African zoos, game farms and reserves, especially during the cold-dry season. Considerable leaf biomass from the indigenous browse trees can be produced for silage making. High nutrient content and minerals from indigenous browsable trees are highly recognised. Indigenous browse trees have low water-soluble carbohydrates (WSC) that render them undesirable for fermentation. Techniques such as wilting browse leaves, mixing cereal crops with browse leaves, and use of additives such as urea and enzymes have been studied extensively to increase WSC of silage from the indigenous browse trees. Anti-nutritional factors from the indigenous browse preferred by the wild ungulates have also been studied extensively. Indigenous browse silages are a potential feed resource for the captive wild ungulates. If the browse trees are used to make silage, they are likely to improve performance of wild ungulates in captivity, especially during the cold-dry season when browse is scarce. Research is needed to assess the feasibility of sustainable production and the effective use of silage from indigenous browse trees in southern Africa. Improving intake and nutrient utilisation and reducing the concentrations of anti-nutritional compounds in silage from the indigenous browse trees of southern Africa should be the focus for animal nutrition research that need further investigation.

Temporal variation in the operational sex ratio and male mating behaviours in reindeer (Rangifer tarandus)

In polygynous species, sexual selection is mostly driven by male ability to monopolize access to females in oestrous. In ungulates, the operational sex ratio (OSR), i.e. the proportion of males to individuals ready to mate, varies throughout the peak rut, resulting from the temporal variation in the number of females in oestrous. But the way males adjust their mating tactics to maximise their access to females in oestrous (i.e. as OSR varies) is yet to be investigated. Using 15 years of behavioural observations in reindeer (Rangifer tarandus), we compared the relative importance of time within the rutting season (days to the peak-rut) and the OSR to explain the variation in the propensity (i.e. the frequency after controlling for the potential number of encounters) of young and adult dominant males to engage in four mating tactics: herding females, chasing other males, investigating female reproductive status, and courting females. Male-male agonistic behaviour was the most frequent mating behaviour, followed by herding. As predicted, dominant male mating tactics changed over the rutting season: first herding, then chasing other males, and finally investigating and courting females. In contrast to our prediction, we did not find support for the OSR theory. We noted some discrepancies in how young and adult dominant males adjusted their tactics during the mating season, adults being more efficient in timing and in performing their behaviour to maximise access to females in oestrous. The reported sequence of mating tactics may be more efficient than a static mating tactic to monopolize females in oestrous, regardless of the population composition.

Cadmium and other elements in tissues from four ungulate species from the Mackenzie Mountain region of the Northwest Territories, Canada

Tissue samples from four ungulate species from the south Mackenzie Mountain region of the Northwest Territories (NT), Canada, were analysed for stable and radioactive elements and (15)N and (13)C stable isotopes. Elevated Cd concentrations in moose (Alces americanus) kidney have been observed in the region and are a health care concern for consumers of traditional foods. This study examined the factors associated with, and potential renal effects from, the accumulation of cadmium, and interactions with other elements in four sympatric ungulate species. Mean renal Cd concentration was highest in moose (48.3mg/kg ww), followed by mountain caribou (Rangifer tarandus caribou) (13.9mg/kg ww) and mountain goat (Oreamnos americanus) (5.78mg/kg ww). No local sources of Cd were evident and the elevated levels in moose are considered to be natural in origin. Conversely, total Hg concentration was significantly higher in mountain caribou kidney (0.21mg/kg ww) than in moose (0.011mg/kg ww). (134)Cs (t½=2.1 y) in mountain goat and Dall's sheep (Ovis dalli) muscle is evidence of deposition from the Fukushima reactor accident in 2011. (137)Cs (t½=30.2 y) in all four ungulates is primarily a remnant of the nuclear weapons tests of the 1960s. The levels of both nuclides are low and the risk to the animals and people consuming them is negligible. Stable isotope δ(15)N and δ(13)C signatures in muscle showed a separation between the mountain caribou, with a lichen-dominated diet, and moose, which browse shrubs and forbs. Isotope signatures for mountain goat and Dall's sheep showed generalist feeding patterns. Differences in elemental and radionuclide levels between species were attributed to relative levels of metal accumulation in the different food items in the diets of the respective species. Kidneys from each species showed minor histological changes in the proximal tubule and glomerulus, although glomerular changes were rare and all changes were rare in mountain goat kidney. Kidney function was not expected to be affected in any species. Provisional Monthly Intake recommendations from the WHO indicate that Cd in moose organs will continue to be a public health care concern. However, traditional foods continue to be an important nutritional component of northern diets, particularly in consideration of the shift towards store-bought food.

Anaplasmataceae in wild ungulates and carnivores in northern Spain

Wild vertebrates are essential hosts for tick-borne diseases but data on the prevalence and diversity of Anaplasma spp. in wildlife are scarce. In this study, we used real-time PCR to investigate the distribution of Anaplasma species in spleen samples collected from 625 wild animals (137 cervids, 227 wild boar, and 261 carnivores) in two regions in northern Spain. A first generic real-time PCR assay was used to screen for the presence of Anaplasma spp. followed by a second species-specific multiplex real-time PCR or partial sequencing of the 16S rRNA gene for species identification. Anaplasma phagocytophilum was highly prevalent in cervids (64.2%), but it was absent from wild boar and carnivores. Interestingly, Anaplasma marginale and Anaplasma ovis were not detected in cervids, but Anaplasma centrale was identified in 1 roe deer and 1 red deer, A. bovis in 4 roe deer, and a novel Ehrlichia sp. in one badger. These findings were highly associated with the tick burden identified in the different hosts. Thus, Ixodes ricinus, the recognized vector of A. phagocytophilum in Europe, was the main tick species parasitizing cervids (93.5%, 1674/1791), whereas Dermacentor reticulatus was the most abundant in wild boar (76.1%, 35/46) and Ixodes hexagonus in carnivores (58.4%, 265/454). More investigations are needed to assess the impact of the different Anaplasma species in wildlife and the risk of transmission to domestic animals.

History and development of research on wildlife parasites in southern Africa, with emphasis on terrestrial mammals, especially ungulates

The history of wildlife parasitology in South Africa, and to some extent southern Africa, is reviewed, giving a brief overview of the early years and following its development from the founding of the Onderstepoort Veterinary Institute in 1908 until the turn of the century. An emphasis is placed on game species. The main findings on protozoan parasites, including those of carnivores, are presented, starting in the 1890s and leading up to the first decade of the 21st century. Important developments with regard to the studies of arthropod and helminth parasites took place during a period of three decades, starting from the 1970s. Because of the sheer volume of work done by parasitologists during this time, this particular part of the overview concentrates on South African authors or authors working in South Africa at the time, and is limited to hosts that are members of the order Perissodactyla and the superorder Cetartiodactyla.

Cross-species comparison of mammalian saliva using an LC-MALDI based proteomic approach

Despite the importance of saliva in the regulation of oral cavity homeostasis, few studies have been conducted to quantitatively compare the saliva of different mammal species. Aiming to define a proteome signature of mammals' saliva, an in-depth SDS-PAGE-LC coupled to MS/MS (GeLC-MS/MS) approach was used to characterize the saliva from primates (human), carnivores (dog), glires (rat and rabbit), and ungulates (sheep, cattle, horse). Despite the high variability in the number of distinct proteins identified per species, most protein families were shared by the mammals studied with the exception of cattle and horse. Alpha-amylase is an example that seems to reflect the natural selection related to digestion efficacy and food recognition. Casein protein family was identified in all species but human, suggesting an alternative to statherin in the protection of hard tissues. Overall, data suggest that different proteins might assure a similar role in the regulation of oral cavity homeostasis, potentially explaining the specific mammals' salivary proteome signature. Moreover, some protein families were identified for the first time in the saliva of some species, the presence of proline-rich proteins in rabbit's saliva being a good example.

Effect of human disturbance on the prey of tiger in the Chitwan National Park--implications for park management

Chitwan National Park is surrounded by large settlements of people who exploit the areas where tigers and their prey occur. In this study, we measured the associations between the abundance of the prey of tiger with habitat, topographic, predator and human disturbance variables, using canonical correspondence analysis. We show that the abundance of hog deer is closely associated with areas of tall grassland and floodplains, while that of other ungulate species is associated with that of forests and short grasslands. Primates were mainly abundant in riverine and mixed forests. Abundances of most species, except hog deer and wild pig, were more closely associated with areas of forests than with open areas, because the latter were mainly occupied by humans and livestock. The presence of the species studied was closely associated with habitat and disturbance variables. Proximity of water holes was more closely associated with the presence of ungulates than primates. There were close associations between human disturbance and abundances of primates and muntjac, possibly because these species are more tolerant and adapted to human disturbance. However, the major prey species of tiger were negatively associated with human disturbance. As a consequence, human disturbance has resulted in a decline in the abundance of tigers and the lack of prey could result in their extinction in the Chitwan NP. Therefore, in terms of the conservation and management of the park, minimizing human disturbance of wildlife habitats and restoration of a buffer zone forest should be the prime objectives.

Demographic characterization and social patterns of the Neotropical pampas deer

The most endangered subspecies of pampas deer Ozotoceros bezoarticus uruguayensis is an endemic cervidae of the Uruguayan temperate grasslands. The aim of our study was to assess the demographic trends, grouping structure and dynamic of this small and isolated population. We surveyed the population during seven years and detected an average of 117 (+ 72.7 SD) individuals (44 censuses). The average population structure observed was 55% adult females, 34% adult males, 10% juveniles, and 1% fawns, with a low recruitment rate of 0.11. The pampas deer is a gregarious cervidae with 62% of individuals being observed within groups of at least three animals. Nevertheless we observed substantial differences on group size and composition based on sex, reproductive status, season and trophic resources availability. The population dynamics showed significant changes around the year in the sexual aggregation-segregation pattern, corresponding with reproductive and physiological status. The mean density on this population (11 deer/ km²) is the highest reported for the species. Comparable data, from other populations, showed a significant correlation between density and sex ratio, with a reduction in the proportion of males with higher deer densities. An action plan for this endangered population should include initiatives involving private landowners, and guidelines to improve the deer habitat.

Ungulate stimulation of nitrogen cycling and retention in Yellowstone Park grasslands

We studied how ungulates and a large variation in site conditions influenced grassland nitrogen (N) dynamics in Yellowstone National Park. In contrast to most grassland N studies that have examined one or two soil N processes, we investigated four rates, net N mineralization, nitrification, denitrification, and inorganic N leaching, at seven paired sites inside and outside long-term (33+ year) exclosures. Our focus was how N fluxes were related to one another among highly variable grasslands and how grazers influenced those relationships. In addition, we examined variation in soil δ¹⁵N among grasslands and the relationships between soil ¹⁵N abundance and N processes. Previously, ungulates were reported to facilitate net N mineralization across variable Yellowstone grasslands and denitrification at mesic sites. In this study, we found that herbivores also promoted nitrification among diverse grasslands. Furthermore, net N mineralization, nitrification, and denitrification (kg N ha^-1 year^-1, each variable) were postively and linearly related to one another among all grasslands (grazed and fenced), and grazers reduced the nitrification/net N mineralization and denitrification/net N mineralization ratios, indicating that ungulates inhibited the proportion of available NH₄⁺ that was nitrified and denitrified. There was no relationship between net N mineralization or nitrification with leaching (indexed by inorganic N adsorbed to resin buried at the bottom of rooting zones) and leaching was unaffected by grazers. Soil δ¹⁵N was positively and linearly related to in situ net N mineralization and nitrification in ungrazed grasslands; however, there was no relationship between isotopic composition of N and those rates among grazed grasslands. The results suggested that grazers simultaneously increased N availability (stimulated net N mineralization and nitrification per unit area) and N conservation (reduced N loss from the soil per unit net N mineralization) in Yellowstone grasslands. Grazers promoted N retention by stimulating microbial productivity, probably caused by herbivores promoting labile soil C. Process-level evidence for N retention by grazers was supported by soil δ¹⁵N data. Grazed grassland with high rates of N cycling had substantially lower soil δ¹⁵N relative to values expected for ungrazed grassland with comparable net N mineralization and nitrification rates. These soil ¹⁵N results suggest that ungulates inhibited N loss at those sites. Such documented evidence for consumer control of N availability to plants, microbial productivity, and N retention in Yellowstone Park is further testimony for the widespread regulation of grassland processes by large herbivores.

The functional relationship between feeding type and jaw and cranial morphology in ungulates

The relationship between jaw and skull morphology and feeding type (grazer, mixed feeder, browser, frugivorous, omnivorous) was analysed in 94 species of extant ungulates. A total of 21 morphological traits of the jaw and skull (17 and 4, respectively) were analysed using analysis of covariance, with body mass as covariate. To take into account the phylogenetic effect, simulations were generated under the Brownian motion model of character evolution. Analysis of covariance was applied to these simulations and the simulated F-ratios were used to assess the signification of the F-ratios for the real values of the traits. The feeding types had a weak effect on ungulate cranial and jaw morphology in comparison with the phylogenetic effect, since, before phylogeny correction, the analysis of covariance showed statistically significant differences associated with feeding type in 15 out of the 21 traits analysed. After controlling for phylogeny, only 2 significant traits remained, the length of the coronoid process and the occipital height. Omnivorous species had shorter coronoid processes than grazers or mixed feeders, and the occipital height was greater in the omnivorous species than in the grazers, mixed feeders or browsers. The coronoid process is involved in the generation of bite force, being the effective moment arm of the temporalis muscle, and occipital height is positively related to the force exerted by the temporalis muscle. This result matches the hypothesis that species with a toughness diet should show higher bite force ("toughness" describes the resistance of a material to being mechanically broken down). When the omnivorous species were excluded from the analysis, no differences in jaw and skull morphology were detected between the rest of the feeding types.

Increasing Himalayan tahr and decreasing chamois densities in the eastern Southern Alps, New Zealand: evidence for interspecific competition

There is anecdotal evidence that increasing densities of Himalayan tahr (Hemitragus jemlahicus) are associated with declining densities of chamois (Rupicapra rupicapra) in the Southern Alps, New Zealand. To examine this phenomenon, densities of tahr and chamois were measured at 53 sites within their sympatric range in the eastern Southern Alps during 1978-1979. In sites where only one species was present, tahr density was significantly higher than chamois density (P=0.032), probably reflecting species differences in sociality. Chamois density was higher in catchments without tahr than in those with tahr (P=0.012). Similarly, tahr density was significantly higher at sites without chamois than at those with chamois (P=0.033). Sites with both species present (termed sympatric) were significantly larger than those with only chamois or tahr (P<0.001). Following the prohibition of aerial hunting of tahr in 1983, 16 of the 17 sites where tahr and chamois were sympatric during 1978-1979 were recounted during 1991-1996. There was a 6-fold increase in the mean density of tahr between the two counts (P=0.001), whereas chamois density had declined significantly (P=0.006). Chamois persisted at only three sites, two of which had the highest chamois densities in 1978-1979. This is evidence that increasing densities of tahr exclude chamois from all but the `best' habitats. We conclude that intensive aerial hunting of tahr during 1967-1983 reduced tahr densities such that chamois could co-exist with tahr.